Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26115.t1 | XP_024629356.1 | 90.4 | 736 | 48 | 2 | 1 | 713 | 1 | 736 | 0.00E+00 | 1332 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26115.t1 | Q9SZL8 | 31.0 | 577 | 360 | 10 | 7 | 551 | 70 | 640 | 3.7e-78 | 294.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26115.t1 | A0A396JHA3 | 89.7 | 593 | 38 | 2 | 1 | 570 | 1 | 593 | 7.2e-309 | 1068.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26115.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26115.t1 | MTR_5g039760 | 59.709 | 206 | 55 | 3 | 1 | 202 | 1 | 182 | 2.20e-73 | 236 |
| MS.gene26115.t1 | MTR_7g074790 | 57.865 | 178 | 54 | 2 | 1 | 175 | 1 | 160 | 8.54e-60 | 201 |
| MS.gene26115.t1 | MTR_7g061980 | 73.109 | 119 | 29 | 1 | 1 | 116 | 1 | 119 | 2.42e-48 | 166 |
| MS.gene26115.t1 | MTR_3g058090 | 48.413 | 126 | 41 | 2 | 520 | 645 | 5 | 106 | 1.36e-28 | 110 |
| MS.gene26115.t1 | MTR_6g051425 | 29.749 | 279 | 161 | 6 | 9 | 254 | 13 | 289 | 7.17e-28 | 115 |
| MS.gene26115.t1 | MTR_0402s0040 | 41.436 | 181 | 98 | 5 | 10 | 184 | 26 | 204 | 1.68e-27 | 117 |
| MS.gene26115.t1 | MTR_0558s0020 | 28.958 | 259 | 154 | 5 | 3 | 236 | 32 | 285 | 2.59e-26 | 110 |
| MS.gene26115.t1 | MTR_8g446020 | 31.928 | 166 | 111 | 1 | 73 | 236 | 80 | 245 | 1.32e-23 | 101 |
| MS.gene26115.t1 | MTR_6g090505 | 30.508 | 177 | 121 | 1 | 96 | 272 | 80 | 254 | 5.84e-22 | 98.6 |
| MS.gene26115.t1 | MTR_4g102720 | 32.164 | 171 | 79 | 3 | 5 | 172 | 2 | 138 | 5.21e-19 | 87.0 |
| MS.gene26115.t1 | MTR_1g083640 | 24.898 | 245 | 154 | 5 | 3 | 222 | 47 | 286 | 2.68e-17 | 83.6 |
| MS.gene26115.t1 | MTR_7g446510 | 29.412 | 170 | 120 | 0 | 66 | 235 | 140 | 309 | 3.58e-16 | 80.9 |
| MS.gene26115.t1 | MTR_1g070355 | 24.891 | 229 | 160 | 5 | 16 | 236 | 80 | 304 | 1.37e-15 | 80.9 |
| MS.gene26115.t1 | MTR_6g022070 | 29.143 | 175 | 117 | 4 | 281 | 454 | 1 | 169 | 7.15e-15 | 77.0 |
| MS.gene26115.t1 | MTR_7g446480 | 30.921 | 152 | 105 | 0 | 84 | 235 | 143 | 294 | 1.53e-14 | 75.9 |
| MS.gene26115.t1 | MTR_5g045210 | 32.203 | 118 | 73 | 2 | 522 | 633 | 20 | 136 | 1.38e-13 | 70.5 |
| MS.gene26115.t1 | MTR_0337s0040 | 27.778 | 144 | 102 | 1 | 73 | 214 | 81 | 224 | 3.88e-13 | 69.7 |
| MS.gene26115.t1 | MTR_4g069880 | 54.412 | 68 | 28 | 1 | 1 | 65 | 1 | 68 | 4.04e-13 | 65.1 |
| MS.gene26115.t1 | MTR_1g019850 | 31.429 | 140 | 86 | 4 | 3 | 138 | 63 | 196 | 4.29e-13 | 70.1 |
| MS.gene26115.t1 | MTR_7g446520 | 26.577 | 222 | 149 | 3 | 16 | 236 | 94 | 302 | 8.24e-13 | 70.9 |
| MS.gene26115.t1 | MTR_5g076070 | 23.377 | 231 | 165 | 5 | 13 | 235 | 56 | 282 | 1.50e-12 | 69.3 |
| MS.gene26115.t1 | MTR_1g086270 | 28.906 | 128 | 72 | 2 | 281 | 408 | 1 | 109 | 1.94e-12 | 64.7 |
| MS.gene26115.t1 | MTR_1g013060 | 25.346 | 217 | 152 | 4 | 1 | 208 | 15 | 230 | 3.21e-12 | 67.4 |
| MS.gene26115.t1 | MTR_7g113010 | 36.290 | 124 | 66 | 3 | 10 | 131 | 457 | 569 | 5.07e-12 | 69.7 |
| MS.gene26115.t1 | MTR_4g117620 | 81.818 | 33 | 6 | 0 | 669 | 701 | 35 | 67 | 6.62e-12 | 62.0 |
| MS.gene26115.t1 | MTR_4g035820 | 26.971 | 241 | 162 | 7 | 10 | 239 | 75 | 312 | 7.22e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26115.t1 | AT4G38180 | 30.189 | 583 | 357 | 10 | 7 | 551 | 70 | 640 | 1.83e-88 | 294 |
| MS.gene26115.t1 | AT4G15090 | 27.435 | 616 | 405 | 8 | 3 | 588 | 44 | 647 | 5.05e-84 | 283 |
| MS.gene26115.t1 | AT4G15090 | 27.435 | 616 | 405 | 8 | 3 | 588 | 44 | 647 | 5.05e-84 | 283 |
| MS.gene26115.t1 | AT4G15090 | 27.435 | 616 | 405 | 8 | 3 | 588 | 44 | 647 | 5.05e-84 | 283 |
| MS.gene26115.t1 | AT4G15090 | 27.435 | 616 | 405 | 8 | 3 | 588 | 44 | 647 | 5.05e-84 | 283 |
| MS.gene26115.t1 | AT4G15090 | 27.435 | 616 | 405 | 8 | 3 | 588 | 44 | 647 | 5.05e-84 | 283 |
| MS.gene26115.t1 | AT1G76320 | 29.623 | 557 | 354 | 10 | 14 | 545 | 1 | 544 | 6.16e-75 | 255 |
| MS.gene26115.t1 | AT1G76320 | 29.623 | 557 | 354 | 10 | 14 | 545 | 1 | 544 | 1.10e-74 | 256 |
| MS.gene26115.t1 | AT1G76320 | 29.623 | 557 | 354 | 10 | 14 | 545 | 1 | 544 | 1.39e-74 | 256 |
| MS.gene26115.t1 | AT1G76320 | 29.623 | 557 | 354 | 10 | 14 | 545 | 1 | 544 | 1.39e-74 | 256 |
| MS.gene26115.t1 | AT3G22170 | 27.885 | 624 | 369 | 13 | 9 | 588 | 69 | 655 | 5.20e-71 | 248 |
| MS.gene26115.t1 | AT3G22170 | 27.885 | 624 | 369 | 13 | 9 | 588 | 69 | 655 | 5.20e-71 | 248 |
| MS.gene26115.t1 | AT3G06250 | 25.458 | 601 | 381 | 11 | 9 | 586 | 189 | 745 | 1.78e-62 | 223 |
| MS.gene26115.t1 | AT3G06250 | 25.458 | 601 | 381 | 11 | 9 | 586 | 189 | 745 | 1.78e-62 | 223 |
| MS.gene26115.t1 | AT3G06250 | 25.458 | 601 | 381 | 11 | 9 | 586 | 189 | 745 | 1.78e-62 | 223 |
| MS.gene26115.t1 | AT5G18960 | 25.539 | 603 | 381 | 13 | 9 | 586 | 210 | 769 | 9.16e-59 | 213 |
| MS.gene26115.t1 | AT5G18960 | 25.539 | 603 | 381 | 13 | 9 | 586 | 210 | 769 | 9.16e-59 | 213 |
| MS.gene26115.t1 | AT2G27110 | 26.146 | 589 | 383 | 12 | 9 | 573 | 48 | 608 | 3.15e-55 | 203 |
| MS.gene26115.t1 | AT2G27110 | 26.146 | 589 | 383 | 12 | 9 | 573 | 48 | 608 | 3.15e-55 | 203 |
| MS.gene26115.t1 | AT4G19990 | 25.507 | 592 | 354 | 10 | 13 | 559 | 24 | 573 | 1.68e-53 | 197 |
| MS.gene26115.t1 | AT4G19990 | 25.507 | 592 | 354 | 10 | 13 | 559 | 24 | 573 | 1.68e-53 | 197 |
| MS.gene26115.t1 | AT4G19990 | 25.507 | 592 | 354 | 10 | 13 | 559 | 24 | 573 | 2.30e-53 | 197 |
| MS.gene26115.t1 | AT4G19990 | 25.507 | 592 | 354 | 10 | 13 | 559 | 38 | 587 | 2.48e-53 | 197 |
| MS.gene26115.t1 | AT4G19990 | 25.338 | 592 | 355 | 10 | 13 | 559 | 24 | 573 | 3.14e-53 | 197 |
| MS.gene26115.t1 | AT4G19990 | 25.338 | 592 | 355 | 10 | 13 | 559 | 24 | 573 | 3.14e-53 | 197 |
| MS.gene26115.t1 | AT4G38170 | 27.494 | 451 | 276 | 10 | 187 | 604 | 24 | 456 | 2.85e-52 | 190 |
| MS.gene26115.t1 | AT4G19990 | 26.459 | 514 | 317 | 7 | 70 | 559 | 40 | 516 | 6.16e-52 | 192 |
| MS.gene26115.t1 | AT2G32250 | 24.689 | 644 | 389 | 14 | 13 | 623 | 41 | 621 | 3.66e-51 | 191 |
| MS.gene26115.t1 | AT2G32250 | 24.845 | 644 | 388 | 14 | 13 | 623 | 41 | 621 | 3.82e-51 | 191 |
| MS.gene26115.t1 | AT2G32250 | 24.845 | 644 | 388 | 14 | 13 | 623 | 41 | 621 | 3.82e-51 | 191 |
| MS.gene26115.t1 | AT2G32250 | 24.689 | 644 | 389 | 14 | 13 | 623 | 41 | 621 | 3.88e-51 | 191 |
| MS.gene26115.t1 | AT2G32250 | 24.689 | 644 | 389 | 14 | 13 | 623 | 41 | 621 | 3.88e-51 | 191 |
| MS.gene26115.t1 | AT2G32250 | 24.689 | 644 | 389 | 14 | 13 | 623 | 41 | 621 | 3.88e-51 | 191 |
| MS.gene26115.t1 | AT2G32250 | 24.728 | 643 | 388 | 14 | 14 | 623 | 1 | 580 | 2.50e-50 | 188 |
| MS.gene26115.t1 | AT2G32250 | 24.728 | 643 | 388 | 14 | 14 | 623 | 1 | 580 | 2.80e-50 | 188 |
| MS.gene26115.t1 | AT2G27110 | 28.155 | 412 | 271 | 6 | 184 | 573 | 55 | 463 | 5.07e-50 | 187 |
| MS.gene26115.t1 | AT1G52520 | 25.044 | 567 | 381 | 13 | 10 | 545 | 85 | 638 | 3.24e-48 | 181 |
| MS.gene26115.t1 | AT1G10240 | 24.912 | 570 | 378 | 14 | 10 | 542 | 48 | 604 | 1.08e-42 | 165 |
| MS.gene26115.t1 | AT1G10240 | 24.912 | 570 | 378 | 14 | 10 | 542 | 48 | 604 | 1.08e-42 | 165 |
| MS.gene26115.t1 | AT1G80010 | 24.080 | 598 | 387 | 12 | 10 | 558 | 95 | 674 | 1.33e-41 | 162 |
| MS.gene26115.t1 | AT5G28530 | 22.241 | 607 | 401 | 14 | 5 | 560 | 50 | 636 | 1.54e-38 | 152 |
| MS.gene26115.t1 | AT5G28530 | 22.405 | 607 | 396 | 15 | 5 | 560 | 50 | 632 | 1.40e-37 | 150 |
| MS.gene26115.t1 | AT5G28530 | 22.405 | 607 | 396 | 15 | 5 | 560 | 50 | 632 | 1.40e-37 | 150 |
| MS.gene26115.t1 | AT5G28530 | 21.777 | 574 | 381 | 14 | 5 | 560 | 50 | 573 | 8.63e-33 | 134 |
| MS.gene26115.t1 | AT5G28530 | 21.951 | 574 | 376 | 15 | 5 | 560 | 50 | 569 | 6.17e-32 | 132 |
Find 121 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGAGGTTCAGTCATATT+TGG | 0.138638 | 5.4:-56822933 | MS.gene26115:intron |
| TGGAAGAGGCTAGTAAATTT+TGG | 0.221773 | 5.4:-56823642 | MS.gene26115:CDS |
| CAAAATGGTTGAAGAATTCT+AGG | 0.231129 | 5.4:+56822433 | None:intergenic |
| TCAAATCCCATTCCAATCTT+TGG | 0.252212 | 5.4:+56823670 | None:intergenic |
| CCTCAACAACTATTTCAAAA+TGG | 0.253372 | 5.4:+56822418 | None:intergenic |
| GTGTGATGCACAGATGATTT+TGG | 0.260666 | 5.4:-56823053 | MS.gene26115:CDS |
| TGTAGAAAGTTTGATACTTT+TGG | 0.266948 | 5.4:-56822120 | MS.gene26115:CDS |
| CCCTTGCCATTGCTTGATCT+TGG | 0.267996 | 5.4:+56822808 | None:intergenic |
| ACATCCGAACTCACAATTTC+TGG | 0.277637 | 5.4:+56821772 | None:intergenic |
| GTTGTTTGATACATTCTTAC+AGG | 0.280157 | 5.4:-56822868 | MS.gene26115:CDS |
| TTAATATTCATGACAAATCT+TGG | 0.288875 | 5.4:-56822596 | MS.gene26115:CDS |
| ATAGAGGTTCAGTCATATTT+GGG | 0.289957 | 5.4:-56822932 | MS.gene26115:intron |
| TTATGCAAGCAAAGGGGTTC+AGG | 0.309393 | 5.4:-56821750 | MS.gene26115:CDS |
| TTGTTATTAATGTAGGCAAT+AGG | 0.319287 | 5.4:-56821216 | MS.gene26115:intron |
| ACATGGCATTTGTTACAAAA+TGG | 0.322826 | 5.4:-56822744 | MS.gene26115:CDS |
| TGGCTAATGACTCTGGATTA+AGG | 0.326845 | 5.4:-56823303 | MS.gene26115:CDS |
| TGGAATGGGATTTGATTCTA+TGG | 0.332757 | 5.4:-56823662 | MS.gene26115:CDS |
| TGCATTCATTCCATTCAAAT+AGG | 0.333189 | 5.4:+56821185 | None:intergenic |
| AACATATTACAAATGTGTTT+TGG | 0.337041 | 5.4:-56823075 | MS.gene26115:CDS |
| TCGCTTAATTCTCTTTGAAC+CGG | 0.337380 | 5.4:+56821720 | None:intergenic |
| TGTTATTAATGTAGGCAATA+GGG | 0.344986 | 5.4:-56821215 | MS.gene26115:intron |
| TGGCTCAAGTTTCTTGATAA+TGG | 0.349009 | 5.4:-56821871 | MS.gene26115:CDS |
| ATTCGATTTCTAGACAAGTT+AGG | 0.350154 | 5.4:+56821955 | None:intergenic |
| CAAAATGGAGTTAAACATCT+TGG | 0.359049 | 5.4:-56822729 | MS.gene26115:CDS |
| CTTGATCTTCATGAACTTGT+GGG | 0.365690 | 5.4:+56821332 | None:intergenic |
| TGTCATGAATATTAAATTTG+TGG | 0.368037 | 5.4:+56822604 | None:intergenic |
| TGGTCAGTGAAGATTGTCTT+TGG | 0.368243 | 5.4:+56822828 | None:intergenic |
| GAGTCAGATTCATGTCTAAT+TGG | 0.376263 | 5.4:+56822231 | None:intergenic |
| AACTTGAGCCATTCTTCCTT+GGG | 0.383639 | 5.4:+56821883 | None:intergenic |
| AAACTTGAGCCATTCTTCCT+TGG | 0.386061 | 5.4:+56821882 | None:intergenic |
| TTTAGGGGAAGGGAGGTTGA+AGG | 0.387913 | 5.4:-56821982 | MS.gene26115:CDS |
| TCTCTGAAATTTGTAGATCA+TGG | 0.390016 | 5.4:+56823386 | None:intergenic |
| TGACATGTTCAAGAAAATAA+TGG | 0.392454 | 5.4:-56821842 | MS.gene26115:CDS |
| ATCTTGCACAACGCCATAAC+GGG | 0.394237 | 5.4:+56822005 | None:intergenic |
| ATGTCGATTGGTTTGTTGTA+AGG | 0.397901 | 5.4:-56823543 | MS.gene26115:CDS |
| GCAAGCATATGAGATTGATT+TGG | 0.403796 | 5.4:-56823323 | MS.gene26115:CDS |
| TATAGTTTCCGTATGGGCTT+CGG | 0.405685 | 5.4:-56823613 | MS.gene26115:CDS |
| ATGGACAATAACGGTGATAA+TGG | 0.410451 | 5.4:-56821802 | MS.gene26115:CDS |
| CTTCTTTCATGCATATCAAA+TGG | 0.417529 | 5.4:-56823107 | MS.gene26115:CDS |
| ATTACACTTTCTCGTAAGAA+TGG | 0.418220 | 5.4:-56823445 | MS.gene26115:CDS |
| TGCACCAATACTGATCCAAA+TGG | 0.418231 | 5.4:-56822325 | MS.gene26115:CDS |
| ATTGATTTGGCTAATGACTC+TGG | 0.429637 | 5.4:-56823310 | MS.gene26115:CDS |
| GTTTGAATTGAATGATGTTA+AGG | 0.437617 | 5.4:-56822070 | MS.gene26115:CDS |
| AAAATGGAGTTAAACATCTT+GGG | 0.438747 | 5.4:-56822728 | MS.gene26115:CDS |
| TTTCCCATTTGGATCAGTAT+TGG | 0.438801 | 5.4:+56822321 | None:intergenic |
| AGTATGGCGTATGGCGAGAT+TGG | 0.439808 | 5.4:-56823175 | MS.gene26115:CDS |
| TGGCATCTTCAGATGATGAT+TGG | 0.443033 | 5.4:-56823696 | MS.gene26115:CDS |
| GATGATTGGAAACCAAAGAT+TGG | 0.443445 | 5.4:-56823682 | MS.gene26115:CDS |
| TGGAAACCAAAGATTGGAAT+GGG | 0.444346 | 5.4:-56823676 | MS.gene26115:CDS |
| CTCTAACTCCGAAGCCCATA+CGG | 0.445217 | 5.4:+56823605 | None:intergenic |
| GCTTGCTTATAGTTTCCGTA+TGG | 0.448607 | 5.4:-56823620 | MS.gene26115:CDS |
| CGCTTAATTCTCTTTGAACC+GGG | 0.451079 | 5.4:+56821721 | None:intergenic |
| AGGCAAAACATGAAGGATCT+TGG | 0.451476 | 5.4:-56822185 | MS.gene26115:CDS |
| TAAGCGACACAAAAGTTGTC+TGG | 0.459328 | 5.4:-56821704 | MS.gene26115:CDS |
| ATTGGTTTGTTGTAAGGAAG+AGG | 0.463930 | 5.4:-56823537 | MS.gene26115:CDS |
| TTCATTCCATTCAAATAGGC+TGG | 0.465343 | 5.4:+56821189 | None:intergenic |
| AGACAAGTGAGTCATTTAGA+TGG | 0.469670 | 5.4:-56822890 | MS.gene26115:CDS |
| GGAACTTCGCGCACAAGCTA+TGG | 0.471111 | 5.4:-56821821 | MS.gene26115:CDS |
| GTTTGTTGTAAGGAAGAGGA+AGG | 0.474996 | 5.4:-56823533 | MS.gene26115:CDS |
| TTCTCGTAAGAATGGAAAGT+TGG | 0.483302 | 5.4:-56823437 | MS.gene26115:CDS |
| CAGAGACAACACACATGCTT+CGG | 0.486204 | 5.4:-56823369 | MS.gene26115:CDS |
| TTGAATGGAATGAATGCATA+GGG | 0.487076 | 5.4:-56821180 | None:intergenic |
| CAATTACACAGCCATGCTAA+TGG | 0.488206 | 5.4:-56821308 | MS.gene26115:intron |
| TCGTCCAGAAATTGTGAGTT+CGG | 0.488854 | 5.4:-56821776 | MS.gene26115:CDS |
| GGGATTTGATTCTATGGAAG+AGG | 0.495105 | 5.4:-56823656 | MS.gene26115:CDS |
| ATGGGCTGCATGTTATATGA+AGG | 0.495383 | 5.4:-56822544 | MS.gene26115:CDS |
| ACTTGATCTTCATGAACTTG+TGG | 0.496550 | 5.4:+56821331 | None:intergenic |
| TGGACAAGAGAAGCCCGTTA+TGG | 0.496786 | 5.4:-56822018 | MS.gene26115:CDS |
| TCGGATGTTATGCAAGCAAA+GGG | 0.497034 | 5.4:-56821757 | MS.gene26115:CDS |
| AATCTTGCACAACGCCATAA+CGG | 0.497648 | 5.4:+56822004 | None:intergenic |
| GAGAAAAGATATGCATATGA+AGG | 0.500242 | 5.4:-56823511 | MS.gene26115:CDS |
| GTTATTAATGTAGGCAATAG+GGG | 0.504103 | 5.4:-56821214 | MS.gene26115:intron |
| AAGCATCACCCAAGGAAGAA+TGG | 0.505676 | 5.4:-56821891 | MS.gene26115:CDS |
| TATGTTTGTCTTCAAAGTCA+TGG | 0.512296 | 5.4:+56823410 | None:intergenic |
| CTTGCTTATAGTTTCCGTAT+GGG | 0.515014 | 5.4:-56823619 | MS.gene26115:CDS |
| AATTCTAGGATATTCACATT+CGG | 0.515042 | 5.4:+56822447 | None:intergenic |
| CTTTCTACAACTACAAGTGA+TGG | 0.518377 | 5.4:+56822134 | None:intergenic |
| CATAAACCATGATGAGTCTC+GGG | 0.518603 | 5.4:+56822768 | None:intergenic |
| GCGAGATTGGATGTCTTTCA+CGG | 0.526117 | 5.4:-56823162 | MS.gene26115:CDS |
| CAACTTATGAGCACACAAGC+AGG | 0.527478 | 5.4:-56823265 | MS.gene26115:CDS |
| CTCATCATGGTTTATGCACA+TGG | 0.528564 | 5.4:-56822761 | MS.gene26115:CDS |
| GCACCAATACTGATCCAAAT+GGG | 0.530972 | 5.4:-56822324 | MS.gene26115:CDS |
| TATGCAAGCAAAGGGGTTCA+GGG | 0.531086 | 5.4:-56821749 | MS.gene26115:CDS |
| TTGGAAACCAAAGATTGGAA+TGG | 0.532585 | 5.4:-56823677 | MS.gene26115:CDS |
| TTGATCTTCATGAACTTGTG+GGG | 0.536334 | 5.4:+56821333 | None:intergenic |
| GCATAAACCATGATGAGTCT+CGG | 0.547827 | 5.4:+56822767 | None:intergenic |
| AATCCTCACATAAGCTTGCA+AGG | 0.553450 | 5.4:-56822362 | MS.gene26115:CDS |
| TAGTGTATCGTCATGTCGAT+TGG | 0.553968 | 5.4:-56823555 | MS.gene26115:CDS |
| ACCAAGATCAAGCAATGGCA+AGG | 0.557252 | 5.4:-56822809 | MS.gene26115:CDS |
| GAGAAAGTGTAATTCTTGCA+AGG | 0.558104 | 5.4:+56823455 | None:intergenic |
| TTTGAATGGAATGAATGCAT+AGG | 0.559346 | 5.4:-56821181 | None:intergenic |
| TGATCTTCATGAACTTGTGG+GGG | 0.560264 | 5.4:+56821334 | None:intergenic |
| TTCGGATGTTATGCAAGCAA+AGG | 0.563515 | 5.4:-56821758 | MS.gene26115:CDS |
| CATTTGATATGCATGAAAGA+AGG | 0.564005 | 5.4:+56823108 | None:intergenic |
| TGTCTCTAAGTTCATTAAAG+CGG | 0.564647 | 5.4:-56821920 | MS.gene26115:CDS |
| TTATTAATGTAGGCAATAGG+GGG | 0.573008 | 5.4:-56821213 | MS.gene26115:intron |
| ATCACTGAGGCAAAACATGA+AGG | 0.573756 | 5.4:-56822192 | MS.gene26115:CDS |
| GCAGGGCATAGAGCTAATGT+TGG | 0.587433 | 5.4:-56823247 | MS.gene26115:CDS |
| TGATATGCATGAAAGAAGGA+TGG | 0.587442 | 5.4:+56823112 | None:intergenic |
| ATGAAGGGAGTGTTAACACT+TGG | 0.588039 | 5.4:-56822528 | MS.gene26115:CDS |
| CATCTTGGGAACTTGATGAC+GGG | 0.592368 | 5.4:-56822714 | MS.gene26115:CDS |
| ACATCTTGGGAACTTGATGA+CGG | 0.592717 | 5.4:-56822715 | MS.gene26115:CDS |
| AAGGCAATTTGTTCTAACAT+CGG | 0.596957 | 5.4:+56823474 | None:intergenic |
| AACTTATGAGCACACAAGCA+GGG | 0.601558 | 5.4:-56823264 | MS.gene26115:CDS |
| TGGGCTGCATGTTATATGAA+GGG | 0.616662 | 5.4:-56822543 | MS.gene26115:CDS |
| GTGATGCCCGAGACTCATCA+TGG | 0.618218 | 5.4:-56822774 | MS.gene26115:CDS |
| GCACAAGCTATGGACAATAA+CGG | 0.625593 | 5.4:-56821811 | MS.gene26115:CDS |
| CACTGACCAAGATCAAGCAA+TGG | 0.631892 | 5.4:-56822814 | MS.gene26115:CDS |
| GGCAACTGAAGCATCACCCA+AGG | 0.632035 | 5.4:-56821899 | MS.gene26115:CDS |
| AAGGGGTTCAGGGTACGACC+CGG | 0.640993 | 5.4:-56821739 | MS.gene26115:CDS |
| AGCTAATGTTGGATTTACAG+AGG | 0.647899 | 5.4:-56823236 | MS.gene26115:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.649097 | 5.4:+56822359 | None:intergenic |
| CTTGGGAACTTGATGACGGG+AGG | 0.649703 | 5.4:-56822711 | MS.gene26115:CDS |
| CCAAGATCAAGCAATGGCAA+GGG | 0.649905 | 5.4:-56822808 | MS.gene26115:CDS |
| TAGAGGTTCAGTCATATTTG+GGG | 0.661113 | 5.4:-56822931 | MS.gene26115:CDS |
| TAATGTTGGATTTACAGAGG+TGG | 0.664199 | 5.4:-56823233 | MS.gene26115:CDS |
| TATTAATGTAGGCAATAGGG+GGG | 0.692237 | 5.4:-56821212 | MS.gene26115:intron |
| CGGATGTTATGCAAGCAAAG+GGG | 0.705294 | 5.4:-56821756 | MS.gene26115:CDS |
| AAGTGATGGAATTTGAAACA+CGG | 0.715996 | 5.4:+56822148 | None:intergenic |
| TGAATGGAATGAATGCATAG+GGG | 0.716012 | 5.4:-56821179 | None:intergenic |
| TTGTGAATATGTCATCACTG+AGG | 0.762460 | 5.4:-56822205 | MS.gene26115:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAAAAACAAATTCATA+AGG | - | chr5.4:56823596-56823615 | MS.gene26115:CDS | 15.0% |
| !! | TTATGAGCTTAAAAAAAAAT+GGG | - | chr5.4:56822317-56822336 | MS.gene26115:CDS | 15.0% |
| !!! | ATAACTATATTTTAAAAAGG+TGG | - | chr5.4:56822841-56822860 | MS.gene26115:CDS | 15.0% |
| !!! | CTGATAACTATATTTTAAAA+AGG | - | chr5.4:56822838-56822857 | MS.gene26115:CDS | 15.0% |
| !!! | CTTTTTAAAATATAGTTATC+AGG | + | chr5.4:56822840-56822859 | None:intergenic | 15.0% |
| !!! | TAATTTGACATAATCATTTT+AGG | - | chr5.4:56823484-56823503 | MS.gene26115:CDS | 15.0% |
| !!! | TGTTTTAATTTTACTTGTTT+TGG | - | chr5.4:56823283-56823302 | MS.gene26115:CDS | 15.0% |
| !!! | TTTTAAGTTGTTATTAATGT+AGG | - | chr5.4:56823656-56823675 | MS.gene26115:CDS | 15.0% |
| !! | CTTATGAGCTTAAAAAAAAA+TGG | - | chr5.4:56822316-56822335 | MS.gene26115:CDS | 20.0% |
| !! | TGTCATGAATATTAAATTTG+TGG | + | chr5.4:56822278-56822297 | None:intergenic | 20.0% |
| !! | TTAATATTCATGACAAATCT+TGG | - | chr5.4:56822283-56822302 | MS.gene26115:CDS | 20.0% |
| !! | TTTCGTAAACAAAAAAAAGA+TGG | - | chr5.4:56821301-56821320 | MS.gene26115:intron | 20.0% |
| !!! | AACATATTACAAATGTGTTT+TGG | - | chr5.4:56821804-56821823 | MS.gene26115:CDS | 20.0% |
| ! | AAAATGGAGTTAAACATCTT+GGG | - | chr5.4:56822151-56822170 | MS.gene26115:CDS | 25.0% |
| ! | CTAAGATACATGTAAAATCA+TGG | + | chr5.4:56823459-56823478 | None:intergenic | 25.0% |
| ! | GTTTGAATTGAATGATGTTA+AGG | - | chr5.4:56822809-56822828 | MS.gene26115:CDS | 25.0% |
| ! | TGACATGTTCAAGAAAATAA+TGG | - | chr5.4:56823037-56823056 | MS.gene26115:CDS | 25.0% |
| ! | TGTTATTAATGTAGGCAATA+GGG | - | chr5.4:56823664-56823683 | MS.gene26115:CDS | 25.0% |
| !! | TGTAGAAAGTTTGATACTTT+TGG | - | chr5.4:56822759-56822778 | MS.gene26115:CDS | 25.0% |
| !! | TTGTTATTAATGTAGGCAAT+AGG | - | chr5.4:56823663-56823682 | MS.gene26115:CDS | 25.0% |
| !!! | AATTCTAGGATATTCACATT+CGG | + | chr5.4:56822435-56822454 | None:intergenic | 25.0% |
| !!! | ACATAATCATTTTAGGTTGA+TGG | - | chr5.4:56823491-56823510 | MS.gene26115:CDS | 25.0% |
| !!! | TTTTGAAATTACCATTAGCA+TGG | + | chr5.4:56823585-56823604 | None:intergenic | 25.0% |
| ACCAGAAAAAAAAAAGCAAG+TGG | + | chr5.4:56821917-56821936 | None:intergenic | 30.0% | |
| ACCTAAAGAAAAAAGTTCAC+AGG | - | chr5.4:56823235-56823254 | MS.gene26115:CDS | 30.0% | |
| ATAGAGGTTCAGTCATATTT+GGG | - | chr5.4:56821947-56821966 | MS.gene26115:CDS | 30.0% | |
| ATATGACTGAACCTCTATAA+TGG | + | chr5.4:56821945-56821964 | None:intergenic | 30.0% | |
| ATTACACTTTCTCGTAAGAA+TGG | - | chr5.4:56821434-56821453 | MS.gene26115:intron | 30.0% | |
| CAAAATGGAGTTAAACATCT+TGG | - | chr5.4:56822150-56822169 | MS.gene26115:CDS | 30.0% | |
| CAAAATGGTTGAAGAATTCT+AGG | + | chr5.4:56822449-56822468 | None:intergenic | 30.0% | |
| CATTTGATATGCATGAAAGA+AGG | + | chr5.4:56821774-56821793 | None:intergenic | 30.0% | |
| CCTCAACAACTATTTCAAAA+TGG | + | chr5.4:56822464-56822483 | None:intergenic | 30.0% | |
| CTTCTTTCATGCATATCAAA+TGG | - | chr5.4:56821772-56821791 | MS.gene26115:CDS | 30.0% | |
| GAGAAAAGATATGCATATGA+AGG | - | chr5.4:56821368-56821387 | MS.gene26115:CDS | 30.0% | |
| GTTATTAATGTAGGCAATAG+GGG | - | chr5.4:56823665-56823684 | MS.gene26115:CDS | 30.0% | |
| GTTGTTTGATACATTCTTAC+AGG | - | chr5.4:56822011-56822030 | MS.gene26115:CDS | 30.0% | |
| TATAGAGGTTCAGTCATATT+TGG | - | chr5.4:56821946-56821965 | MS.gene26115:CDS | 30.0% | |
| TATGTTTGTCTTCAAAGTCA+TGG | + | chr5.4:56821472-56821491 | None:intergenic | 30.0% | |
| TGAGAGAAGAAAAAGAAGTA+TGG | - | chr5.4:56821688-56821707 | MS.gene26115:CDS | 30.0% | |
| TGCATTCATTCCATTCAAAT+AGG | + | chr5.4:56823697-56823716 | None:intergenic | 30.0% | |
| TGTCTCTAAGTTCATTAAAG+CGG | - | chr5.4:56822959-56822978 | MS.gene26115:intron | 30.0% | |
| TTATTAATGTAGGCAATAGG+GGG | - | chr5.4:56823666-56823685 | MS.gene26115:CDS | 30.0% | |
| ! | AAGGCAATTTGTTCTAACAT+CGG | + | chr5.4:56821408-56821427 | None:intergenic | 30.0% |
| ! | AAGTGATGGAATTTGAAACA+CGG | + | chr5.4:56822734-56822753 | None:intergenic | 30.0% |
| ! | ACATGGCATTTGTTACAAAA+TGG | - | chr5.4:56822135-56822154 | MS.gene26115:CDS | 30.0% |
| ! | ATTCGATTTCTAGACAAGTT+AGG | + | chr5.4:56822927-56822946 | None:intergenic | 30.0% |
| ! | ATTTTGGATTACGGGTATTT+TGG | - | chr5.4:56821842-56821861 | MS.gene26115:CDS | 30.0% |
| ! | GTATTTTCAACGACAATTGT+TGG | - | chr5.4:56821739-56821758 | MS.gene26115:CDS | 30.0% |
| ! | GTGTGTATATTTTTCCCATT+TGG | + | chr5.4:56822572-56822591 | None:intergenic | 30.0% |
| !! | TCTCTGAAATTTGTAGATCA+TGG | + | chr5.4:56821496-56821515 | None:intergenic | 30.0% |
| !!! | AAGCAGATTTTGAGATACTT+TGG | - | chr5.4:56822241-56822260 | MS.gene26115:CDS | 30.0% |
| !!! | ACCTGTGAACTTTTTTCTTT+AGG | + | chr5.4:56823239-56823258 | None:intergenic | 30.0% |
| !!! | CCATTTTGAAATAGTTGTTG+AGG | - | chr5.4:56822461-56822480 | MS.gene26115:CDS | 30.0% |
| !!! | TGTGAACTTTTTTCTTTAGG+TGG | + | chr5.4:56823236-56823255 | None:intergenic | 30.0% |
| AAAAAAAGCAAGTGGCCTAT+TGG | + | chr5.4:56821909-56821928 | None:intergenic | 35.0% | |
| AAGTTCACAGGTATATGAGT+TGG | - | chr5.4:56823247-56823266 | MS.gene26115:CDS | 35.0% | |
| ACTTGATCTTCATGAACTTG+TGG | + | chr5.4:56823551-56823570 | None:intergenic | 35.0% | |
| AGACAAGTGAGTCATTTAGA+TGG | - | chr5.4:56821989-56822008 | MS.gene26115:CDS | 35.0% | |
| AGCTAATGTTGGATTTACAG+AGG | - | chr5.4:56821643-56821662 | MS.gene26115:intron | 35.0% | |
| ATGCAGTAGCAGAAAATAGA+TGG | + | chr5.4:56823316-56823335 | None:intergenic | 35.0% | |
| ATGGACAATAACGGTGATAA+TGG | - | chr5.4:56823077-56823096 | MS.gene26115:CDS | 35.0% | |
| CTTGATCTTCATGAACTTGT+GGG | + | chr5.4:56823550-56823569 | None:intergenic | 35.0% | |
| CTTGCTTATAGTTTCCGTAT+GGG | - | chr5.4:56821260-56821279 | MS.gene26115:intron | 35.0% | |
| CTTTCTACAACTACAAGTGA+TGG | + | chr5.4:56822748-56822767 | None:intergenic | 35.0% | |
| GAGTCAGATTCATGTCTAAT+TGG | + | chr5.4:56822651-56822670 | None:intergenic | 35.0% | |
| GATGATTGGAAACCAAAGAT+TGG | - | chr5.4:56821197-56821216 | MS.gene26115:CDS | 35.0% | |
| GCAAGCATATGAGATTGATT+TGG | - | chr5.4:56821556-56821575 | MS.gene26115:intron | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | - | chr5.4:56821646-56821665 | MS.gene26115:CDS | 35.0% | |
| TAGAGGTTCAGTCATATTTG+GGG | - | chr5.4:56821948-56821967 | MS.gene26115:CDS | 35.0% | |
| TATTAATGTAGGCAATAGGG+GGG | - | chr5.4:56823667-56823686 | MS.gene26115:CDS | 35.0% | |
| TCAAATCCCATTCCAATCTT+TGG | + | chr5.4:56821212-56821231 | None:intergenic | 35.0% | |
| TCGCTTAATTCTCTTTGAAC+CGG | + | chr5.4:56823162-56823181 | None:intergenic | 35.0% | |
| TGATATGCATGAAAGAAGGA+TGG | + | chr5.4:56821770-56821789 | None:intergenic | 35.0% | |
| TGGAAACCAAAGATTGGAAT+GGG | - | chr5.4:56821203-56821222 | MS.gene26115:CDS | 35.0% | |
| TGGAATGGGATTTGATTCTA+TGG | - | chr5.4:56821217-56821236 | MS.gene26115:intron | 35.0% | |
| TGGCTCAAGTTTCTTGATAA+TGG | - | chr5.4:56823008-56823027 | MS.gene26115:intron | 35.0% | |
| TTCATTCCATTCAAATAGGC+TGG | + | chr5.4:56823693-56823712 | None:intergenic | 35.0% | |
| TTCTCGTAAGAATGGAAAGT+TGG | - | chr5.4:56821442-56821461 | MS.gene26115:intron | 35.0% | |
| TTGATCTTCATGAACTTGTG+GGG | + | chr5.4:56823549-56823568 | None:intergenic | 35.0% | |
| TTGGAAACCAAAGATTGGAA+TGG | - | chr5.4:56821202-56821221 | MS.gene26115:CDS | 35.0% | |
| TTGTGAATATGTCATCACTG+AGG | - | chr5.4:56822674-56822693 | MS.gene26115:CDS | 35.0% | |
| TTTCCCATTTGGATCAGTAT+TGG | + | chr5.4:56822561-56822580 | None:intergenic | 35.0% | |
| ! | AGAAAAAGAAGTATGGCGTA+TGG | - | chr5.4:56821695-56821714 | MS.gene26115:CDS | 35.0% |
| ! | CACAGATGATTTTGGATTAC+GGG | - | chr5.4:56821834-56821853 | MS.gene26115:CDS | 35.0% |
| ! | GAGAAAGTGTAATTCTTGCA+AGG | + | chr5.4:56821427-56821446 | None:intergenic | 35.0% |
| ! | GCACAGATGATTTTGGATTA+CGG | - | chr5.4:56821833-56821852 | MS.gene26115:CDS | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | - | chr5.4:56821931-56821950 | MS.gene26115:CDS | 35.0% |
| ! | TGGAAGAGGCTAGTAAATTT+TGG | - | chr5.4:56821237-56821256 | MS.gene26115:intron | 35.0% |
| !! | ATGTCGATTGGTTTGTTGTA+AGG | - | chr5.4:56821336-56821355 | MS.gene26115:CDS | 35.0% |
| !! | ATTGATTTGGCTAATGACTC+TGG | - | chr5.4:56821569-56821588 | MS.gene26115:intron | 35.0% |
| !! | ATTGGTTTGTTGTAAGGAAG+AGG | - | chr5.4:56821342-56821361 | MS.gene26115:CDS | 35.0% |
| !!! | GCCACTTGCTTTTTTTTTTC+TGG | - | chr5.4:56821913-56821932 | MS.gene26115:CDS | 35.0% |
| !!! | TTTTGGCGATGTTGTTTCTT+TGG | - | chr5.4:56821859-56821878 | MS.gene26115:CDS | 35.0% |
| AAACTTGAGCCATTCTTCCT+TGG | + | chr5.4:56823000-56823019 | None:intergenic | 40.0% | |
| AACTTATGAGCACACAAGCA+GGG | - | chr5.4:56821615-56821634 | MS.gene26115:intron | 40.0% | |
| AACTTGAGCCATTCTTCCTT+GGG | + | chr5.4:56822999-56823018 | None:intergenic | 40.0% | |
| AATCCTCACATAAGCTTGCA+AGG | - | chr5.4:56822517-56822536 | MS.gene26115:CDS | 40.0% | |
| AATCTTGCACAACGCCATAA+CGG | + | chr5.4:56822878-56822897 | None:intergenic | 40.0% | |
| ACATCCGAACTCACAATTTC+TGG | + | chr5.4:56823110-56823129 | None:intergenic | 40.0% | |
| ACATCTTGGGAACTTGATGA+CGG | - | chr5.4:56822164-56822183 | MS.gene26115:CDS | 40.0% | |
| AGGCAAAACATGAAGGATCT+TGG | - | chr5.4:56822694-56822713 | MS.gene26115:CDS | 40.0% | |
| ATCACTGAGGCAAAACATGA+AGG | - | chr5.4:56822687-56822706 | MS.gene26115:CDS | 40.0% | |
| CAATTACACAGCCATGCTAA+TGG | - | chr5.4:56823571-56823590 | MS.gene26115:CDS | 40.0% | |
| CATAAACCATGATGAGTCTC+GGG | + | chr5.4:56822114-56822133 | None:intergenic | 40.0% | |
| CGCTTAATTCTCTTTGAACC+GGG | + | chr5.4:56823161-56823180 | None:intergenic | 40.0% | |
| CTCATCATGGTTTATGCACA+TGG | - | chr5.4:56822118-56822137 | MS.gene26115:CDS | 40.0% | |
| GCACAAGCTATGGACAATAA+CGG | - | chr5.4:56823068-56823087 | MS.gene26115:CDS | 40.0% | |
| GCACCAATACTGATCCAAAT+GGG | - | chr5.4:56822555-56822574 | MS.gene26115:CDS | 40.0% | |
| GCATAAACCATGATGAGTCT+CGG | + | chr5.4:56822115-56822134 | None:intergenic | 40.0% | |
| GCTTGCTTATAGTTTCCGTA+TGG | - | chr5.4:56821259-56821278 | MS.gene26115:intron | 40.0% | |
| GGGATTTGATTCTATGGAAG+AGG | - | chr5.4:56821223-56821242 | MS.gene26115:intron | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | + | chr5.4:56822523-56822542 | None:intergenic | 40.0% | |
| TAAGCGACACAAAAGTTGTC+TGG | - | chr5.4:56823175-56823194 | MS.gene26115:CDS | 40.0% | |
| TAGTGTATCGTCATGTCGAT+TGG | - | chr5.4:56821324-56821343 | MS.gene26115:CDS | 40.0% | |
| TATAGTTTCCGTATGGGCTT+CGG | - | chr5.4:56821266-56821285 | MS.gene26115:intron | 40.0% | |
| TCGGATGTTATGCAAGCAAA+GGG | - | chr5.4:56823122-56823141 | MS.gene26115:CDS | 40.0% | |
| TCGTCCAGAAATTGTGAGTT+CGG | - | chr5.4:56823103-56823122 | MS.gene26115:CDS | 40.0% | |
| TGATCTTCATGAACTTGTGG+GGG | + | chr5.4:56823548-56823567 | None:intergenic | 40.0% | |
| TGCACCAATACTGATCCAAA+TGG | - | chr5.4:56822554-56822573 | MS.gene26115:CDS | 40.0% | |
| TGGCATCTTCAGATGATGAT+TGG | - | chr5.4:56821183-56821202 | MS.gene26115:CDS | 40.0% | |
| TGGCTAATGACTCTGGATTA+AGG | - | chr5.4:56821576-56821595 | MS.gene26115:intron | 40.0% | |
| TGGGCTGCATGTTATATGAA+GGG | - | chr5.4:56822336-56822355 | MS.gene26115:CDS | 40.0% | |
| TGGTCAGTGAAGATTGTCTT+TGG | + | chr5.4:56822054-56822073 | None:intergenic | 40.0% | |
| TTCGGATGTTATGCAAGCAA+AGG | - | chr5.4:56823121-56823140 | MS.gene26115:CDS | 40.0% | |
| ! | AAGCAATAGCAGCTTTGTCA+AGG | + | chr5.4:56823416-56823435 | None:intergenic | 40.0% |
| ! | ATGGCGTTGTGCAAGATTTT+AGG | - | chr5.4:56822880-56822899 | MS.gene26115:CDS | 40.0% |
| ! | ATGGGCTGCATGTTATATGA+AGG | - | chr5.4:56822335-56822354 | MS.gene26115:CDS | 40.0% |
| ! | GTGTGATGCACAGATGATTT+TGG | - | chr5.4:56821826-56821845 | MS.gene26115:CDS | 40.0% |
| ! | TGGCGTTGTGCAAGATTTTA+GGG | - | chr5.4:56822881-56822900 | MS.gene26115:CDS | 40.0% |
| !! | ATGAAGGGAGTGTTAACACT+TGG | - | chr5.4:56822351-56822370 | MS.gene26115:CDS | 40.0% |
| !! | GTTTGTTGTAAGGAAGAGGA+AGG | - | chr5.4:56821346-56821365 | MS.gene26115:CDS | 40.0% |
| !! | TGTGCAAGATTTTAGGGGAA+GGG | - | chr5.4:56822887-56822906 | MS.gene26115:CDS | 40.0% |
| !! | TTGTGCAAGATTTTAGGGGA+AGG | - | chr5.4:56822886-56822905 | MS.gene26115:CDS | 40.0% |
| !!! | TTTTTTCTTTAGGTGGAGCG+CGG | + | chr5.4:56823229-56823248 | None:intergenic | 40.0% |
| AAGCATCACCCAAGGAAGAA+TGG | - | chr5.4:56822988-56823007 | MS.gene26115:intron | 45.0% | |
| ACCAAGATCAAGCAATGGCA+AGG | - | chr5.4:56822070-56822089 | MS.gene26115:CDS | 45.0% | |
| ACTGTACCAACCATGCCAAT+AGG | - | chr5.4:56821891-56821910 | MS.gene26115:CDS | 45.0% | |
| ATCTTGCACAACGCCATAAC+GGG | + | chr5.4:56822877-56822896 | None:intergenic | 45.0% | |
| CAACTTATGAGCACACAAGC+AGG | - | chr5.4:56821614-56821633 | MS.gene26115:intron | 45.0% | |
| CACTGACCAAGATCAAGCAA+TGG | - | chr5.4:56822065-56822084 | MS.gene26115:CDS | 45.0% | |
| CAGAGACAACACACATGCTT+CGG | - | chr5.4:56821510-56821529 | MS.gene26115:intron | 45.0% | |
| CCAAGATCAAGCAATGGCAA+GGG | - | chr5.4:56822071-56822090 | MS.gene26115:CDS | 45.0% | |
| CGGATGTTATGCAAGCAAAG+GGG | - | chr5.4:56823123-56823142 | MS.gene26115:CDS | 45.0% | |
| GCGAGATTGGATGTCTTTCA+CGG | - | chr5.4:56821717-56821736 | MS.gene26115:CDS | 45.0% | |
| TATGCAAGCAAAGGGGTTCA+GGG | - | chr5.4:56823130-56823149 | MS.gene26115:CDS | 45.0% | |
| TTATGCAAGCAAAGGGGTTC+AGG | - | chr5.4:56823129-56823148 | MS.gene26115:CDS | 45.0% | |
| ! | CATCTTGGGAACTTGATGAC+GGG | - | chr5.4:56822165-56822184 | MS.gene26115:CDS | 45.0% |
| ! | GGCGTTGTGCAAGATTTTAG+GGG | - | chr5.4:56822882-56822901 | MS.gene26115:CDS | 45.0% |
| AAGCAAGTGGCCTATTGGCA+TGG | + | chr5.4:56821904-56821923 | None:intergenic | 50.0% | |
| AAGTGGCCTATTGGCATGGT+TGG | + | chr5.4:56821900-56821919 | None:intergenic | 50.0% | |
| AGTATGGCGTATGGCGAGAT+TGG | - | chr5.4:56821704-56821723 | MS.gene26115:CDS | 50.0% | |
| CCCTTGCCATTGCTTGATCT+TGG | + | chr5.4:56822074-56822093 | None:intergenic | 50.0% | |
| CTCTAACTCCGAAGCCCATA+CGG | + | chr5.4:56821277-56821296 | None:intergenic | 50.0% | |
| GCAGGGCATAGAGCTAATGT+TGG | - | chr5.4:56821632-56821651 | MS.gene26115:intron | 50.0% | |
| TGGACAAGAGAAGCCCGTTA+TGG | - | chr5.4:56822861-56822880 | MS.gene26115:CDS | 50.0% | |
| TGTGGGGGCTCATAAGTTAG+AGG | + | chr5.4:56823533-56823552 | None:intergenic | 50.0% | |
| TTTAGGGGAAGGGAGGTTGA+AGG | - | chr5.4:56822897-56822916 | MS.gene26115:CDS | 50.0% | |
| !! | GCAAGATTTTAGGGGAAGGG+AGG | - | chr5.4:56822890-56822909 | MS.gene26115:CDS | 50.0% |
| GGAACTTCGCGCACAAGCTA+TGG | - | chr5.4:56823058-56823077 | MS.gene26115:CDS | 55.0% | |
| GTGATGCCCGAGACTCATCA+TGG | - | chr5.4:56822105-56822124 | MS.gene26115:CDS | 55.0% | |
| ! | GGCAACTGAAGCATCACCCA+AGG | - | chr5.4:56822980-56822999 | MS.gene26115:intron | 55.0% |
| ! | GGCATGGTTGGTACAGTACG+TGG | + | chr5.4:56821888-56821907 | None:intergenic | 55.0% |
| !! | CTTGGGAACTTGATGACGGG+AGG | - | chr5.4:56822168-56822187 | MS.gene26115:CDS | 55.0% |
| AAGGGGTTCAGGGTACGACC+CGG | - | chr5.4:56823140-56823159 | MS.gene26115:CDS | 60.0% | |
| GGGGGGCCAGCCTATTTGAA+TGG | - | chr5.4:56823684-56823703 | MS.gene26115:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 56821182 | 56823719 | 56821182 | ID=MS.gene26115 |
| chr5.4 | mRNA | 56821182 | 56823719 | 56821182 | ID=MS.gene26115.t1;Parent=MS.gene26115 |
| chr5.4 | exon | 56823013 | 56823719 | 56823013 | ID=MS.gene26115.t1.exon1;Parent=MS.gene26115.t1 |
| chr5.4 | CDS | 56823013 | 56823719 | 56823013 | ID=cds.MS.gene26115.t1;Parent=MS.gene26115.t1 |
| chr5.4 | exon | 56821645 | 56822950 | 56821645 | ID=MS.gene26115.t1.exon2;Parent=MS.gene26115.t1 |
| chr5.4 | CDS | 56821645 | 56822950 | 56821645 | ID=cds.MS.gene26115.t1;Parent=MS.gene26115.t1 |
| chr5.4 | exon | 56821309 | 56821395 | 56821309 | ID=MS.gene26115.t1.exon3;Parent=MS.gene26115.t1 |
| chr5.4 | CDS | 56821309 | 56821395 | 56821309 | ID=cds.MS.gene26115.t1;Parent=MS.gene26115.t1 |
| chr5.4 | exon | 56821182 | 56821223 | 56821182 | ID=MS.gene26115.t1.exon4;Parent=MS.gene26115.t1 |
| chr5.4 | CDS | 56821182 | 56821223 | 56821182 | ID=cds.MS.gene26115.t1;Parent=MS.gene26115.t1 |
| Gene Sequence |
| Protein sequence |
