AlfalfaGEDB | MS.gene26141

M. sativa cultivar XinJiangDaYe / MS.gene26141

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26141.t1	XP_003616209.1	96.7	239	6	2	1	239	1	237	9.60E-123	449.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26141.t1	Q39263	49.2	183	56	9	89	239	83	260	6.7e-32	139.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26141.t1	G7KFY0	96.7	239	6	2	1	239	1	237	6.9e-123	449.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene26141.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26141.t1	MTR_5g077370	96.653	239	6	2	1	239	1	237	7.74e-173	475
MS.gene26141.t1	MTR_3g065020	57.430	249	85	8	1	239	1	238	5.37e-83	248
MS.gene26141.t1	MTR_1g033340	44.231	260	107	10	4	239	6	251	4.30e-58	185
MS.gene26141.t1	MTR_2g104900	66.234	77	18	3	88	157	80	155	2.02e-26	103
MS.gene26141.t1	MTR_1g013130	32.812	256	120	11	14	239	29	262	6.07e-24	96.7
MS.gene26141.t1	MTR_1g107055	38.889	144	73	5	66	205	41	173	3.63e-23	93.2
MS.gene26141.t1	MTR_4g006575	47.154	123	54	3	38	158	16	129	7.99e-20	85.1
MS.gene26141.t1	MTR_4g006600	47.154	123	54	3	38	158	16	129	7.99e-20	85.1
MS.gene26141.t1	MTR_3g106230	41.045	134	57	5	43	155	22	154	4.06e-19	83.2
MS.gene26141.t1	MTR_4g128340	64.912	57	17	1	89	145	45	98	2.58e-16	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26141.t1	AT1G66140	49.180	183	56	9	89	239	83	260	9.61e-43	145
MS.gene26141.t1	AT1G24625	39.286	224	79	12	35	239	24	209	1.03e-31	115
MS.gene26141.t1	AT1G80730	60.227	88	18	2	88	158	65	152	1.87e-24	97.4
MS.gene26141.t1	AT5G25160	46.491	114	54	4	82	188	52	165	8.80e-24	95.9
MS.gene26141.t1	AT5G10970	56.098	82	29	3	82	158	95	174	1.01e-21	91.3
MS.gene26141.t1	AT5G57520	79.487	39	8	0	88	126	49	87	9.63e-16	72.4
MS.gene26141.t1	AT5G14010	69.444	36	11	0	89	124	36	71	1.14e-12	64.3
MS.gene26141.t1	AT5G01860	44.615	65	31	1	58	122	39	98	5.16e-11	60.8
MS.gene26141.t1	AT1G67030	43.038	79	33	3	71	146	18	87	5.60e-11	60.5

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Find 29 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAGAGATTCAAATTCAAT+AGG	0.312010	5.4:+57173903	MS.gene26141:CDS
ACAGAATTTCATACTCACTG+AGG	0.743093	5.4:+57174367	MS.gene26141:CDS
AGAGATATATCATATGAATT+AGG	0.358518	5.4:-57173840	None:intergenic
AGGATTTGTGATGTTGTAAA+AGG	0.238996	5.4:-57173820	None:intergenic
ATATGAGATTCGAGCAACAA+GGG	0.654483	5.4:+57174252	MS.gene26141:CDS
ATGAGGAGTCAAAGTTAATG+TGG	0.619143	5.4:+57174303	MS.gene26141:CDS
ATTTGACATTGAAACTTTGA+AGG	0.446905	5.4:+57174426	MS.gene26141:CDS
CAAAGTTTCAATGTCAAATC+TGG	0.316382	5.4:-57174422	None:intergenic
CAAGAGATTCAAATTCAATA+GGG	0.379098	5.4:+57173904	MS.gene26141:CDS
CGACAAGAATCCGGGGCGGG+TGG	0.543660	5.4:+57174338	MS.gene26141:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGATTTGTGATGTTGTAAA+AGG	-	chr5.4:57173823-57173842	None:intergenic	30.0%
CAAAGTTTCAATGTCAAATC+TGG	-	chr5.4:57174425-57174444	None:intergenic	30.0%
TATTTGCATGAGAAAACTCT+TGG	-	chr5.4:57173990-57174009	None:intergenic	30.0%
TGTTGGATTTCCAATATTCT+TGG	+	chr5.4:57174277-57174296	MS.gene26141:CDS	30.0%
ACAGAATTTCATACTCACTG+AGG	+	chr5.4:57174367-57174386	MS.gene26141:CDS	35.0%
AGCAAAAAGAGCTATGAGAA+TGG	+	chr5.4:57174082-57174101	MS.gene26141:CDS	35.0%
ATATGAGATTCGAGCAACAA+GGG	+	chr5.4:57174252-57174271	MS.gene26141:CDS	35.0%
ATGAGGAGTCAAAGTTAATG+TGG	+	chr5.4:57174303-57174322	MS.gene26141:CDS	35.0%
GCAAAAAGAGCTATGAGAAT+GGG	+	chr5.4:57174083-57174102	MS.gene26141:CDS	35.0%
GTTTCTCACCAACAACAATT+AGG	+	chr5.4:57174204-57174223	MS.gene26141:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	57173726	57174445	57173726	ID=MS.gene26141
chr5.4	mRNA	57173726	57174445	57173726	ID=MS.gene26141.t1;Parent=MS.gene26141
chr5.4	exon	57173726	57174445	57173726	ID=MS.gene26141.t1.exon1;Parent=MS.gene26141.t1
chr5.4	CDS	57173726	57174445	57173726	ID=cds.MS.gene26141.t1;Parent=MS.gene26141.t1

Gene Sequence

>MS.gene26141

ATGAAACAAAACATTGATCTTGAAGTAGAAGCTTGTGCAGAATATGAATCTGAAGTTACAAGCCAAGTTGATTCTAATGTATCAACTCAAGAAACCTTTTACAACATCACAAATCCTAATTCATATGATATATCTCTTGACTTAAGTCTAAATTTCAAGAACAGTGAGATACCAACAACAAGAGATTCAAATTCAATAGGGTTCTCACTTTCAAGCACTTCTGAGAACAGCAGCAATGAACCTGCAGCAGCAGCAACAATTCCAAGAGTTTTCTCATGCAAATACTGTCAGAGAAAGTTTTTCAGTTCTCAAGCTCTTGGTGGACACCAAAATGCACATAAAAGAGAAAGAACATTAGCAAAAAGAGCTATGAGAATGGGAATGTTTTCTGACAGGTATAATGCTAGTTTAGCATCTTTACCTTTGCATGGTTCTTTTAGGTCATTAGGGATAAAAGCACACTCTTCAATGCACTATGGTTTCTCACCAACAACAATTAGGCCTCATCATCATGAAGTGAAAACTTATATGAGATTCGAGCAACAAGGGTGTGTTGGATTTCCAATATTCTTGGAAGATGAGGAGTCAAAGTTAATGTGGCCAGGTAGTTTTCGACAAGAATCCGGGGCGGGTGGTGCTCAACAGAATTTCATACTCACTGAGGTGAATCCATGTGTAGACAGAGAAAAATCTACACCAGATTTGACATTGAAACTTTGA

Protein sequence

>MS.gene26141.t1

MKQNIDLEVEACAEYESEVTSQVDSNVSTQETFYNITNPNSYDISLDLSLNFKNSEIPTTRDSNSIGFSLSSTSENSSNEPAAAATIPRVFSCKYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGMFSDRYNASLASLPLHGSFRSLGIKAHSSMHYGFSPTTIRPHHHEVKTYMRFEQQGCVGFPIFLEDEESKLMWPGSFRQESGAGGAQQNFILTEVNPCVDREKSTPDLTLKL