Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26169.t1 | XP_003616176.1 | 96.4 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 5.60E-227 | 796.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26169.t1 | F4KGY6 | 44.5 | 337 | 148 | 8 | 21 | 357 | 33 | 330 | 5.6e-50 | 199.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26169.t1 | G7KFU7 | 96.4 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 4.1e-227 | 796.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26169.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26169.t1 | MTR_5g076960 | 96.429 | 420 | 15 | 0 | 1 | 420 | 1 | 420 | 0.0 | 844 |
| MS.gene26169.t1 | MTR_5g076960 | 95.925 | 319 | 13 | 0 | 102 | 420 | 1 | 319 | 0.0 | 572 |
| MS.gene26169.t1 | MTR_3g064500 | 61.189 | 286 | 103 | 3 | 4 | 288 | 19 | 297 | 2.14e-102 | 308 |
| MS.gene26169.t1 | MTR_6g477860 | 36.504 | 452 | 206 | 14 | 24 | 418 | 38 | 465 | 5.61e-55 | 189 |
| MS.gene26169.t1 | MTR_1g067000 | 55.769 | 104 | 38 | 1 | 24 | 127 | 28 | 123 | 2.31e-34 | 130 |
| MS.gene26169.t1 | MTR_8g028655 | 39.535 | 215 | 95 | 6 | 28 | 226 | 49 | 244 | 8.10e-34 | 129 |
| MS.gene26169.t1 | MTR_7g118330 | 67.619 | 105 | 32 | 1 | 23 | 125 | 6 | 110 | 1.22e-32 | 130 |
| MS.gene26169.t1 | MTR_0123s0070 | 58.763 | 97 | 32 | 2 | 28 | 124 | 35 | 123 | 5.68e-31 | 120 |
| MS.gene26169.t1 | MTR_0123s0070 | 58.163 | 98 | 33 | 2 | 28 | 125 | 35 | 124 | 6.59e-31 | 120 |
| MS.gene26169.t1 | MTR_4g061370 | 61.053 | 95 | 33 | 1 | 174 | 264 | 332 | 426 | 4.03e-24 | 105 |
| MS.gene26169.t1 | MTR_6g477860 | 26.536 | 358 | 182 | 14 | 118 | 418 | 37 | 370 | 2.02e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26169.t1 | AT5G17300 | 45.821 | 347 | 129 | 11 | 21 | 357 | 33 | 330 | 1.98e-55 | 188 |
| MS.gene26169.t1 | AT5G37260 | 58.537 | 164 | 59 | 3 | 23 | 186 | 16 | 170 | 2.51e-44 | 156 |
| MS.gene26169.t1 | AT3G10113 | 44.105 | 229 | 104 | 6 | 28 | 245 | 50 | 265 | 9.69e-38 | 140 |
| MS.gene26169.t1 | AT1G18330 | 41.224 | 245 | 113 | 7 | 28 | 245 | 35 | 275 | 2.20e-37 | 139 |
| MS.gene26169.t1 | AT1G18330 | 41.224 | 245 | 113 | 7 | 28 | 245 | 61 | 301 | 3.43e-37 | 139 |
| MS.gene26169.t1 | AT2G46830 | 61.798 | 89 | 34 | 0 | 20 | 108 | 1 | 89 | 1.90e-32 | 129 |
| MS.gene26169.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 3.74e-32 | 124 |
| MS.gene26169.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 3.74e-32 | 124 |
| MS.gene26169.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 3.77e-32 | 123 |
| MS.gene26169.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 3.77e-32 | 123 |
| MS.gene26169.t1 | AT3G09600 | 56.566 | 99 | 35 | 1 | 32 | 130 | 32 | 122 | 4.77e-32 | 123 |
| MS.gene26169.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.55e-31 | 127 |
| MS.gene26169.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.55e-31 | 127 |
| MS.gene26169.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.55e-31 | 127 |
| MS.gene26169.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.55e-31 | 127 |
| MS.gene26169.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.55e-31 | 127 |
| MS.gene26169.t1 | AT1G01060 | 64.486 | 107 | 36 | 1 | 20 | 124 | 1 | 107 | 1.76e-31 | 127 |
| MS.gene26169.t1 | AT5G52660 | 56.122 | 98 | 35 | 1 | 28 | 125 | 57 | 146 | 1.06e-30 | 120 |
| MS.gene26169.t1 | AT5G52660 | 56.122 | 98 | 35 | 1 | 28 | 125 | 57 | 146 | 1.11e-30 | 120 |
| MS.gene26169.t1 | AT1G01520 | 38.350 | 206 | 92 | 6 | 28 | 226 | 46 | 223 | 1.53e-30 | 118 |
| MS.gene26169.t1 | AT1G01520 | 38.350 | 206 | 92 | 6 | 28 | 226 | 46 | 223 | 1.53e-30 | 118 |
| MS.gene26169.t1 | AT4G01280 | 57.843 | 102 | 35 | 2 | 24 | 125 | 40 | 133 | 2.19e-30 | 119 |
| MS.gene26169.t1 | AT4G01280 | 57.843 | 102 | 35 | 2 | 24 | 125 | 40 | 133 | 2.26e-30 | 119 |
| MS.gene26169.t1 | AT1G01520 | 38.350 | 206 | 92 | 6 | 28 | 226 | 46 | 223 | 2.37e-30 | 119 |
| MS.gene26169.t1 | AT1G01520 | 42.208 | 154 | 71 | 3 | 28 | 181 | 46 | 181 | 2.74e-30 | 118 |
| MS.gene26169.t1 | AT5G02840 | 49.565 | 115 | 49 | 2 | 32 | 145 | 37 | 143 | 4.01e-30 | 117 |
| MS.gene26169.t1 | AT5G02840 | 56.383 | 94 | 33 | 1 | 32 | 125 | 37 | 122 | 4.52e-30 | 118 |
| MS.gene26169.t1 | AT5G02840 | 56.383 | 94 | 33 | 1 | 32 | 125 | 37 | 122 | 4.52e-30 | 118 |
| MS.gene26169.t1 | AT5G02840 | 56.989 | 93 | 32 | 1 | 32 | 124 | 37 | 121 | 5.22e-30 | 117 |
| MS.gene26169.t1 | AT5G02840 | 49.565 | 115 | 49 | 2 | 32 | 145 | 37 | 143 | 6.55e-30 | 117 |
| MS.gene26169.t1 | AT5G17300 | 41.216 | 296 | 123 | 12 | 68 | 357 | 5 | 255 | 1.69e-23 | 100 |
| MS.gene26169.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 61 | 124 | 5 | 60 | 3.12e-15 | 75.5 |
| MS.gene26169.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 61 | 124 | 5 | 60 | 3.12e-15 | 75.5 |
| MS.gene26169.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 61 | 124 | 5 | 60 | 3.79e-15 | 74.7 |
| MS.gene26169.t1 | AT3G09600 | 50.000 | 64 | 24 | 1 | 61 | 124 | 5 | 60 | 3.79e-15 | 74.7 |
Find 81 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGATTCTATGGAGATTT+TGG | 0.128871 | 5.4:+57439258 | None:intergenic |
| TCATGATGTACAACCTTTAA+TGG | 0.196529 | 5.4:+57441111 | MS.gene26169:CDS |
| TCGCTTGTGTCGTTAGATTT+TGG | 0.203212 | 5.4:+57440878 | MS.gene26169:CDS |
| GATTTAAGAAATACCATTAA+AGG | 0.226502 | 5.4:-57441124 | None:intergenic |
| GTAATTCACATTATCACTTT+TGG | 0.280046 | 5.4:-57441808 | None:intergenic |
| TTCCTCAGATGATGATGATT+TGG | 0.286247 | 5.4:-57441047 | None:intergenic |
| TGGTTGCGACACATTCTTTA+GGG | 0.316667 | 5.4:-57441422 | None:intergenic |
| AAGGGTTTGTACCATATAAA+AGG | 0.320529 | 5.4:+57441883 | MS.gene26169:CDS |
| GGATGAATCGGCTTCCGTTT+TGG | 0.347869 | 5.4:-57440785 | None:intergenic |
| TTGGTTGCGACACATTCTTT+AGG | 0.358230 | 5.4:-57441423 | None:intergenic |
| ACAGTGAGACTTAGAACATT+TGG | 0.362434 | 5.4:+57441858 | MS.gene26169:CDS |
| CTTGAAGCTTTAAAGTTATA+CGG | 0.366914 | 5.4:+57440319 | MS.gene26169:CDS |
| TTCCTTGTGCAGTGGCTTGA+AGG | 0.374324 | 5.4:-57441646 | None:intergenic |
| CGCTGAAGTTGCTGCATGGC+AGG | 0.384263 | 5.4:-57441561 | None:intergenic |
| CGTATAACTTTAAAGCTTCA+AGG | 0.388114 | 5.4:-57440318 | None:intergenic |
| CCTATTGGGAGGGAACTATA+AGG | 0.389437 | 5.4:-57441979 | None:intergenic |
| AGACTTAGAACATTTGGAAA+AGG | 0.406784 | 5.4:+57441864 | MS.gene26169:CDS |
| TGATGTCGAAGAAGACTTGC+AGG | 0.408269 | 5.4:-57441517 | None:intergenic |
| TGAGACCGGGGACAAACTTC+CGG | 0.418000 | 5.4:-57440981 | None:intergenic |
| GTGGACTATTTCAGACAATT+CGG | 0.423011 | 5.4:+57441623 | MS.gene26169:CDS |
| GTCTTGCAACTGTTGTTCCT+TGG | 0.430710 | 5.4:+57441601 | MS.gene26169:CDS |
| TAAAGTTATACGGTCGAGCC+TGG | 0.431959 | 5.4:+57440329 | MS.gene26169:CDS |
| AGTTGCTGCATGGCAGGAAT+AGG | 0.442858 | 5.4:-57441555 | None:intergenic |
| GATAATGTGAATTACTTTGT+TGG | 0.443037 | 5.4:+57441816 | MS.gene26169:CDS |
| TTGCAACTGTTGTTCCTTGG+TGG | 0.457649 | 5.4:+57441604 | MS.gene26169:CDS |
| TTGTACATCATGAGTTGAAC+CGG | 0.471354 | 5.4:-57441101 | None:intergenic |
| ACTGCAGATAATACCGACTT+TGG | 0.472597 | 5.4:-57440917 | None:intergenic |
| CCCTCGGGTTCCTTGTGCAG+TGG | 0.476144 | 5.4:-57441654 | None:intergenic |
| CTCAAGAAGTGGAAATCTAC+TGG | 0.479784 | 5.4:-57441023 | None:intergenic |
| TCAACTACTTTACGTGGGTA+AGG | 0.488398 | 5.4:-57440806 | None:intergenic |
| GAATGAAGGGAGAACCTTCA+AGG | 0.489688 | 5.4:-57440129 | None:intergenic |
| AAGGAAGGATCTTCTTGTGT+TGG | 0.490240 | 5.4:+57441726 | MS.gene26169:CDS |
| GCAGTTGCTTCAGAAACCCT+TGG | 0.491941 | 5.4:+57440935 | MS.gene26169:CDS |
| GACTTAGAACATTTGGAAAA+GGG | 0.492224 | 5.4:+57441865 | MS.gene26169:CDS |
| CAGATCAATCGAGACTCTGA+TGG | 0.493763 | 5.4:+57440716 | MS.gene26169:intron |
| TTACGTGGGTAAGGATGAAT+CGG | 0.497072 | 5.4:-57440797 | None:intergenic |
| TGGAAATGACCATGCCTTGA+AGG | 0.504748 | 5.4:+57440115 | MS.gene26169:CDS |
| CGGGGACAAACTTCCGGCAG+GGG | 0.506435 | 5.4:-57440975 | None:intergenic |
| TTCTTCTGCTGCTACTTCGT+TGG | 0.506774 | 5.4:-57441442 | None:intergenic |
| GAAGTGGAAATCTACTGGTA+TGG | 0.509677 | 5.4:-57441018 | None:intergenic |
| CAGCACTGATGGATGAGACC+GGG | 0.531459 | 5.4:-57440994 | None:intergenic |
| GCGATTTCAACTACTTTACG+TGG | 0.532217 | 5.4:-57440812 | None:intergenic |
| ACCGGGGACAAACTTCCGGC+AGG | 0.532872 | 5.4:-57440977 | None:intergenic |
| GGAGGGAACATCAACGTATG+AGG | 0.535905 | 5.4:+57441952 | MS.gene26169:CDS |
| ACTGGTATGGACAGCACTGA+TGG | 0.540181 | 5.4:-57441005 | None:intergenic |
| CCCTGCCGGAAGTTTGTCCC+CGG | 0.547980 | 5.4:+57440976 | MS.gene26169:CDS |
| CCTCAGTGGCTGTTCCAAGT+TGG | 0.552497 | 5.4:-57440849 | None:intergenic |
| CTGTTTCACTTAGTGTAGTG+TGG | 0.555752 | 5.4:-57441839 | None:intergenic |
| TCTGATTCAGATACCCCTGC+CGG | 0.559724 | 5.4:+57440962 | MS.gene26169:CDS |
| TCACAAAACAGAGAGAAAAG+TGG | 0.563691 | 5.4:+57440272 | MS.gene26169:CDS |
| CGACAGTAACAGACGAGAGG+AGG | 0.565037 | 5.4:+57441934 | MS.gene26169:CDS |
| CAAATAGATGAACTGAATGC+CGG | 0.567205 | 5.4:+57441082 | MS.gene26169:CDS |
| CCGGGGACAAACTTCCGGCA+GGG | 0.568889 | 5.4:-57440976 | None:intergenic |
| GGCCTTCAAGCCACTGCACA+AGG | 0.577432 | 5.4:+57441644 | MS.gene26169:CDS |
| CAAGTCTTCTTCGACATCAA+CGG | 0.581258 | 5.4:+57441521 | MS.gene26169:CDS |
| ACAGCACTGATGGATGAGAC+CGG | 0.582260 | 5.4:-57440995 | None:intergenic |
| TTCCACCTCCAAGACCAAAA+CGG | 0.592397 | 5.4:+57440771 | MS.gene26169:CDS |
| AAAGAATGAAATCTCCAACT+TGG | 0.596383 | 5.4:+57440835 | MS.gene26169:CDS |
| GACAGTAACAGACGAGAGGA+GGG | 0.604818 | 5.4:+57441935 | MS.gene26169:CDS |
| CGATTTCAACTACTTTACGT+GGG | 0.606836 | 5.4:-57440811 | None:intergenic |
| AAGGGAGAACCTTCAAGGCA+TGG | 0.608656 | 5.4:-57440124 | None:intergenic |
| AGATCAATCGAGACTCTGAT+GGG | 0.620608 | 5.4:+57440717 | MS.gene26169:intron |
| GCCACTGCACAAGGAACCCG+AGG | 0.620928 | 5.4:+57441653 | MS.gene26169:CDS |
| GATGATTTGGACTCAAGAAG+TGG | 0.621298 | 5.4:-57441034 | None:intergenic |
| ATGATGAAGAAAGCAATGAA+AGG | 0.625912 | 5.4:+57441772 | MS.gene26169:CDS |
| ACCACGCTGAAGTTGCTGCA+TGG | 0.627773 | 5.4:-57441565 | None:intergenic |
| AGAAAACAACTCTCCAAAGT+CGG | 0.638359 | 5.4:+57440904 | MS.gene26169:CDS |
| GTCCAAATCATCATCATCTG+AGG | 0.641348 | 5.4:+57441045 | MS.gene26169:CDS |
| TATCTGAATCAGAGAAACCA+AGG | 0.643676 | 5.4:-57440952 | None:intergenic |
| TGATGGGAACGACACAACAA+TGG | 0.647153 | 5.4:+57440733 | MS.gene26169:CDS |
| TGTACCATATAAAAGGTGCA+TGG | 0.659379 | 5.4:+57441890 | MS.gene26169:CDS |
| TGGGAACGACACAACAATGG+TGG | 0.665179 | 5.4:+57440736 | MS.gene26169:CDS |
| AGCACTGATGGATGAGACCG+GGG | 0.683824 | 5.4:-57440993 | None:intergenic |
| ATCTGAATCAGAGAAACCAA+GGG | 0.684620 | 5.4:-57440951 | None:intergenic |
| CCAACTTGGAACAGCCACTG+AGG | 0.697656 | 5.4:+57440849 | MS.gene26169:CDS |
| GCCATGCAGCAACTTCAGCG+TGG | 0.713190 | 5.4:+57441564 | MS.gene26169:CDS |
| GTTCGACAGTAACAGACGAG+AGG | 0.713362 | 5.4:+57441931 | MS.gene26169:CDS |
| TTGTCTGAAATAGTCCACCA+AGG | 0.714861 | 5.4:-57441618 | None:intergenic |
| CCACTGCACAAGGAACCCGA+GGG | 0.723649 | 5.4:+57441654 | MS.gene26169:CDS |
| AAAAGTTTGAGAGTTCGACA+AGG | 0.741043 | 5.4:-57441468 | None:intergenic |
| ACAAGCGAATTAGACCTCAG+TGG | 0.788179 | 5.4:-57440863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAAAATCATGT+AGG | + | chr5.4:57439767-57439786 | MS.gene26169:intron | 10.0% |
| !! | AAATAAATAAAAATCATGTA+GGG | + | chr5.4:57439768-57439787 | MS.gene26169:intron | 10.0% |
| !! | AATTAATAAATCAGAAAATA+TGG | + | chr5.4:57440439-57440458 | MS.gene26169:intron | 10.0% |
| !!! | AAATTTATGTATACTTTTAT+AGG | + | chr5.4:57440231-57440250 | MS.gene26169:intron | 10.0% |
| !!! | ATAAATTTTCACTTAATATA+TGG | - | chr5.4:57440593-57440612 | None:intergenic | 10.0% |
| !!! | ATTATTTTGTATTTTATTCT+TGG | + | chr5.4:57439352-57439371 | MS.gene26169:intron | 10.0% |
| !!! | TTATTTTGTATTTTATTCTT+GGG | + | chr5.4:57439353-57439372 | MS.gene26169:intron | 10.0% |
| !! | AATAAATAAAAATCATGTAG+GGG | + | chr5.4:57439769-57439788 | MS.gene26169:intron | 15.0% |
| !! | TGTAATTAACAAAATGAAAT+AGG | - | chr5.4:57441154-57441173 | None:intergenic | 15.0% |
| !! | TTATTAAATCTATGCATATT+TGG | - | chr5.4:57439569-57439588 | None:intergenic | 15.0% |
| !!! | ATTTTATATGCTTTGATTTT+TGG | + | chr5.4:57440174-57440193 | MS.gene26169:intron | 15.0% |
| !!! | TAATTAAAAAGAGAGTATTT+TGG | + | chr5.4:57439902-57439921 | MS.gene26169:intron | 15.0% |
| !! | AAGTGAAAATTTATGATCAA+TGG | + | chr5.4:57440599-57440618 | MS.gene26169:intron | 20.0% |
| !! | GATTTAAGAAATACCATTAA+AGG | - | chr5.4:57441127-57441146 | None:intergenic | 20.0% |
| !! | TGGTAAAAAAAAATCCTTTA+TGG | + | chr5.4:57439922-57439941 | MS.gene26169:intron | 20.0% |
| !! | TTAACAAAATGAAATAGGTT+AGG | - | chr5.4:57441149-57441168 | None:intergenic | 20.0% |
| !! | TTCACTTAATATATGGTTTA+TGG | - | chr5.4:57440586-57440605 | None:intergenic | 20.0% |
| !!! | GAAAAAAAGTTATTTTTGAG+TGG | + | chr5.4:57439620-57439639 | MS.gene26169:intron | 20.0% |
| !!! | TAAATATATTGGTTGTGATT+TGG | + | chr5.4:57439526-57439545 | MS.gene26169:intron | 20.0% |
| !!! | TATTTTGTTTGTGTATGTTA+AGG | + | chr5.4:57439423-57439442 | MS.gene26169:intron | 20.0% |
| !!! | TCATTTTGTTAATTACAACA+AGG | + | chr5.4:57441157-57441176 | MS.gene26169:intron | 20.0% |
| ! | AGATCAAACATAAGAACAAA+AGG | - | chr5.4:57441375-57441394 | None:intergenic | 25.0% |
| ! | ATGGAATGGTTCAATTATTA+AGG | + | chr5.4:57439868-57439887 | MS.gene26169:intron | 25.0% |
| ! | CACAAATAGATAAGAATGAA+GGG | - | chr5.4:57440145-57440164 | None:intergenic | 25.0% |
| ! | GACTAAAATCATAACCATAA+AGG | - | chr5.4:57439939-57439958 | None:intergenic | 25.0% |
| ! | GATAATGTGAATTACTTTGT+TGG | + | chr5.4:57441816-57441835 | MS.gene26169:CDS | 25.0% |
| ! | TCACAAATAGATAAGAATGA+AGG | - | chr5.4:57440146-57440165 | None:intergenic | 25.0% |
| ! | TCTTAATATTGTCTAGAAAC+TGG | + | chr5.4:57441392-57441411 | MS.gene26169:intron | 25.0% |
| ! | TGGAATGGTTCAATTATTAA+GGG | + | chr5.4:57439869-57439888 | MS.gene26169:intron | 25.0% |
| !! | GAAAATATGGTCTAAGTTTT+TGG | + | chr5.4:57440452-57440471 | MS.gene26169:intron | 25.0% |
| !! | GTAATTCACATTATCACTTT+TGG | - | chr5.4:57441811-57441830 | None:intergenic | 25.0% |
| !! | TATGTATACTTTTATAGGCA+AGG | + | chr5.4:57440236-57440255 | MS.gene26169:intron | 25.0% |
| !!! | AGTTTTGAATTTTCAGATCT+TGG | + | chr5.4:57440373-57440392 | MS.gene26169:intron | 25.0% |
| !!! | CTTGAAGCTTTAAAGTTATA+CGG | + | chr5.4:57440319-57440338 | MS.gene26169:CDS | 25.0% |
| !!! | TGCTATTTGATCAATTTTCA+GGG | + | chr5.4:57440032-57440051 | MS.gene26169:intron | 25.0% |
| !!! | TTGCTATTTGATCAATTTTC+AGG | + | chr5.4:57440031-57440050 | MS.gene26169:intron | 25.0% |
| AAAGAATGAAATCTCCAACT+TGG | + | chr5.4:57440835-57440854 | MS.gene26169:CDS | 30.0% | |
| AAAGATTCTTCTTGCAAAAG+AGG | + | chr5.4:57440409-57440428 | MS.gene26169:intron | 30.0% | |
| AAGGGTTTGTACCATATAAA+AGG | + | chr5.4:57441883-57441902 | MS.gene26169:CDS | 30.0% | |
| ACTCAACAAAGTTAGTTACA+AGG | - | chr5.4:57439711-57439730 | None:intergenic | 30.0% | |
| AGAATATACCTAGCTAAACA+AGG | + | chr5.4:57439679-57439698 | MS.gene26169:intron | 30.0% | |
| AGACTTAGAACATTTGGAAA+AGG | + | chr5.4:57441864-57441883 | MS.gene26169:CDS | 30.0% | |
| AGAGACATCAAAAACTATGA+TGG | - | chr5.4:57441220-57441239 | None:intergenic | 30.0% | |
| ATGATGAAGAAAGCAATGAA+AGG | + | chr5.4:57441772-57441791 | MS.gene26169:CDS | 30.0% | |
| CAAAGTTAGTTACAAGGTTA+AGG | - | chr5.4:57439705-57439724 | None:intergenic | 30.0% | |
| CGAAGAAAAAGAGATTCAAA+AGG | + | chr5.4:57441707-57441726 | MS.gene26169:CDS | 30.0% | |
| GAAAAAGAGATTCAAAAGGA+AGG | + | chr5.4:57441711-57441730 | MS.gene26169:CDS | 30.0% | |
| GACTTAGAACATTTGGAAAA+GGG | + | chr5.4:57441865-57441884 | MS.gene26169:CDS | 30.0% | |
| TCATGATGTACAACCTTTAA+TGG | + | chr5.4:57441111-57441130 | MS.gene26169:CDS | 30.0% | |
| ! | ATGAGATTGAGGTTGTTATT+TGG | + | chr5.4:57439396-57439415 | MS.gene26169:intron | 30.0% |
| ! | ATTTGGTTTATGTCTTCTTG+TGG | + | chr5.4:57439838-57439857 | MS.gene26169:intron | 30.0% |
| ! | CTACTTGATCAATTTTCATG+TGG | + | chr5.4:57440095-57440114 | MS.gene26169:CDS | 30.0% |
| ! | CTCTGTTTTGTGATAGTATA+TGG | - | chr5.4:57440265-57440284 | None:intergenic | 30.0% |
| ! | GAGTCATCAAAGTCTAATTT+TGG | + | chr5.4:57439727-57439746 | MS.gene26169:intron | 30.0% |
| !! | AATTTTCAGGGTCAAAAAGA+AGG | + | chr5.4:57440044-57440063 | MS.gene26169:intron | 30.0% |
| !! | CGTATAACTTTAAAGCTTCA+AGG | - | chr5.4:57440321-57440340 | None:intergenic | 30.0% |
| !! | GTTTTTGATCTGATTTGTGT+TGG | + | chr5.4:57439448-57439467 | MS.gene26169:intron | 30.0% |
| !! | TTTTGAGTGGTTCTTGTTAA+TGG | + | chr5.4:57439633-57439652 | MS.gene26169:intron | 30.0% |
| !!! | ATTTTCAAGTTTCAACCTCA+AGG | - | chr5.4:57440651-57440670 | None:intergenic | 30.0% |
| !!! | TGCTCAGAAGTTTTTTTCTA+AGG | + | chr5.4:57440535-57440554 | MS.gene26169:CDS | 30.0% |
| AAAAGTTTGAGAGTTCGACA+AGG | - | chr5.4:57441471-57441490 | None:intergenic | 35.0% | |
| AATTTATGATCAATGGCCCT+TGG | + | chr5.4:57440606-57440625 | MS.gene26169:intron | 35.0% | |
| ACAGTGAGACTTAGAACATT+TGG | + | chr5.4:57441858-57441877 | MS.gene26169:CDS | 35.0% | |
| AGAAAACAACTCTCCAAAGT+CGG | + | chr5.4:57440904-57440923 | MS.gene26169:CDS | 35.0% | |
| ATCTGAATCAGAGAAACCAA+GGG | - | chr5.4:57440954-57440973 | None:intergenic | 35.0% | |
| ATGTTCTGTGGTGAAAATGA+AGG | - | chr5.4:57440480-57440499 | None:intergenic | 35.0% | |
| CAAATAGATGAACTGAATGC+CGG | + | chr5.4:57441082-57441101 | MS.gene26169:CDS | 35.0% | |
| CATGACTGATATCGTAATCA+AGG | - | chr5.4:57441336-57441355 | None:intergenic | 35.0% | |
| CGATTTCAACTACTTTACGT+GGG | - | chr5.4:57440814-57440833 | None:intergenic | 35.0% | |
| GGGTAATTTGAATGAATGGA+TGG | + | chr5.4:57439789-57439808 | MS.gene26169:intron | 35.0% | |
| GTAGGGGTAATTTGAATGAA+TGG | + | chr5.4:57439785-57439804 | MS.gene26169:intron | 35.0% | |
| TATCTGAATCAGAGAAACCA+AGG | - | chr5.4:57440955-57440974 | None:intergenic | 35.0% | |
| TCACAAAACAGAGAGAAAAG+TGG | + | chr5.4:57440272-57440291 | MS.gene26169:CDS | 35.0% | |
| TTTGCATTTAGCATCTCCAA+GGG | - | chr5.4:57440625-57440644 | None:intergenic | 35.0% | |
| ! | ATTTTCACCACAGAACATGT+TGG | + | chr5.4:57440482-57440501 | MS.gene26169:intron | 35.0% |
| ! | GTGGACTATTTCAGACAATT+CGG | + | chr5.4:57441623-57441642 | MS.gene26169:CDS | 35.0% |
| ! | TGAATGTAGATGTTTTCCCT+CGG | - | chr5.4:57441673-57441692 | None:intergenic | 35.0% |
| ! | TGTACCATATAAAAGGTGCA+TGG | + | chr5.4:57441890-57441909 | MS.gene26169:CDS | 35.0% |
| ! | TGTCGAACTCTCAAACTTTT+TGG | + | chr5.4:57441471-57441490 | MS.gene26169:CDS | 35.0% |
| ! | TTCCTCAGATGATGATGATT+TGG | - | chr5.4:57441050-57441069 | None:intergenic | 35.0% |
| ! | TTGTACATCATGAGTTGAAC+CGG | - | chr5.4:57441104-57441123 | None:intergenic | 35.0% |
| !!! | ACTTTTTGGAACAACTCTGT+TGG | + | chr5.4:57441485-57441504 | MS.gene26169:CDS | 35.0% |
| AAGGAAGGATCTTCTTGTGT+TGG | + | chr5.4:57441726-57441745 | MS.gene26169:CDS | 40.0% | |
| AGATCAATCGAGACTCTGAT+GGG | + | chr5.4:57440717-57440736 | MS.gene26169:intron | 40.0% | |
| AGGCATTATGTTGAAATCGC+AGG | - | chr5.4:57441316-57441335 | None:intergenic | 40.0% | |
| CAAGTCTTCTTCGACATCAA+CGG | + | chr5.4:57441521-57441540 | MS.gene26169:CDS | 40.0% | |
| CTCAAGAAGTGGAAATCTAC+TGG | - | chr5.4:57441026-57441045 | None:intergenic | 40.0% | |
| CTGTTTCACTTAGTGTAGTG+TGG | - | chr5.4:57441842-57441861 | None:intergenic | 40.0% | |
| GAAGTGGAAATCTACTGGTA+TGG | - | chr5.4:57441021-57441040 | None:intergenic | 40.0% | |
| GCGATTTCAACTACTTTACG+TGG | - | chr5.4:57440815-57440834 | None:intergenic | 40.0% | |
| GCTAAATGCAAACTTCCTTG+AGG | + | chr5.4:57440633-57440652 | MS.gene26169:intron | 40.0% | |
| GTCCAAATCATCATCATCTG+AGG | + | chr5.4:57441045-57441064 | MS.gene26169:CDS | 40.0% | |
| GTTTGCATTTAGCATCTCCA+AGG | - | chr5.4:57440626-57440645 | None:intergenic | 40.0% | |
| TCAACTACTTTACGTGGGTA+AGG | - | chr5.4:57440809-57440828 | None:intergenic | 40.0% | |
| TGCTAATGCAACTCCAATCA+TGG | - | chr5.4:57441257-57441276 | None:intergenic | 40.0% | |
| TGGTTGCGACACATTCTTTA+GGG | - | chr5.4:57441425-57441444 | None:intergenic | 40.0% | |
| TTACGTGGGTAAGGATGAAT+CGG | - | chr5.4:57440800-57440819 | None:intergenic | 40.0% | |
| TTATGTCTTCTTGTGGTGTG+TGG | + | chr5.4:57439845-57439864 | MS.gene26169:intron | 40.0% | |
| TTGGTTGCGACACATTCTTT+AGG | - | chr5.4:57441426-57441445 | None:intergenic | 40.0% | |
| TTGTGAGGAACATGAGATTG+AGG | + | chr5.4:57439385-57439404 | MS.gene26169:intron | 40.0% | |
| ! | AATACCTTCGATTTTTCGCC+AGG | - | chr5.4:57440350-57440369 | None:intergenic | 40.0% |
| ! | GAATGTAGATGTTTTCCCTC+GGG | - | chr5.4:57441672-57441691 | None:intergenic | 40.0% |
| ! | GATGATTTGGACTCAAGAAG+TGG | - | chr5.4:57441037-57441056 | None:intergenic | 40.0% |
| ! | TCTGCCATGCACCTTTTATA+TGG | - | chr5.4:57441897-57441916 | None:intergenic | 40.0% |
| ! | TTGTCTGAAATAGTCCACCA+AGG | - | chr5.4:57441621-57441640 | None:intergenic | 40.0% |
| !! | ACTGCAGATAATACCGACTT+TGG | - | chr5.4:57440920-57440939 | None:intergenic | 40.0% |
| !! | TCGCTTGTGTCGTTAGATTT+TGG | + | chr5.4:57440878-57440897 | MS.gene26169:CDS | 40.0% |
| ACAAGCGAATTAGACCTCAG+TGG | - | chr5.4:57440866-57440885 | None:intergenic | 45.0% | |
| ACTGTCTGTGACTGCAATCA+TGG | + | chr5.4:57441189-57441208 | MS.gene26169:intron | 45.0% | |
| CAGATCAATCGAGACTCTGA+TGG | + | chr5.4:57440716-57440735 | MS.gene26169:intron | 45.0% | |
| CTTGGGTTTGTGTCTTTGTG+AGG | + | chr5.4:57439370-57439389 | MS.gene26169:intron | 45.0% | |
| CTTTGTGCCAACATGTTCTG+TGG | - | chr5.4:57440492-57440511 | None:intergenic | 45.0% | |
| GAATGAAGGGAGAACCTTCA+AGG | - | chr5.4:57440132-57440151 | None:intergenic | 45.0% | |
| GTCTTGCAACTGTTGTTCCT+TGG | + | chr5.4:57441601-57441620 | MS.gene26169:CDS | 45.0% | |
| TAAAGTTATACGGTCGAGCC+TGG | + | chr5.4:57440329-57440348 | MS.gene26169:CDS | 45.0% | |
| TGATGGGAACGACACAACAA+TGG | + | chr5.4:57440733-57440752 | MS.gene26169:CDS | 45.0% | |
| TGATGTCGAAGAAGACTTGC+AGG | - | chr5.4:57441520-57441539 | None:intergenic | 45.0% | |
| TGGAAATGACCATGCCTTGA+AGG | + | chr5.4:57440115-57440134 | MS.gene26169:CDS | 45.0% | |
| TTCCACCTCCAAGACCAAAA+CGG | + | chr5.4:57440771-57440790 | MS.gene26169:CDS | 45.0% | |
| TTGCAACTGTTGTTCCTTGG+TGG | + | chr5.4:57441604-57441623 | MS.gene26169:CDS | 45.0% | |
| ! | TTCTTCTGCTGCTACTTCGT+TGG | - | chr5.4:57441445-57441464 | None:intergenic | 45.0% |
| !! | GGTTAAGGCCTTGTTTAGCT+AGG | - | chr5.4:57439690-57439709 | None:intergenic | 45.0% |
| !! | ATATAAAACTATAAATATAT+TGG | + | chr5.4:57439515-57439534 | MS.gene26169:intron | 5.0% |
| !!! | TTTTTTTTTTTTATGATATT+TGG | + | chr5.4:57439821-57439840 | MS.gene26169:intron | 5.0% |
| AAGGGAGAACCTTCAAGGCA+TGG | - | chr5.4:57440127-57440146 | None:intergenic | 50.0% | |
| AGTTGCTGCATGGCAGGAAT+AGG | - | chr5.4:57441558-57441577 | None:intergenic | 50.0% | |
| CTTGTGGTGTGTGGATGGAA+TGG | + | chr5.4:57439854-57439873 | MS.gene26169:intron | 50.0% | |
| GACAGTAACAGACGAGAGGA+GGG | + | chr5.4:57441935-57441954 | MS.gene26169:CDS | 50.0% | |
| GATGTCTCTGCATCACAACG+CGG | + | chr5.4:57441231-57441250 | MS.gene26169:intron | 50.0% | |
| GCAGTTGCTTCAGAAACCCT+TGG | + | chr5.4:57440935-57440954 | MS.gene26169:CDS | 50.0% | |
| GGAGGGAACATCAACGTATG+AGG | + | chr5.4:57441952-57441971 | MS.gene26169:CDS | 50.0% | |
| GTCTTCTTGTGGTGTGTGGA+TGG | + | chr5.4:57439849-57439868 | MS.gene26169:intron | 50.0% | |
| GTTCGACAGTAACAGACGAG+AGG | + | chr5.4:57441931-57441950 | MS.gene26169:CDS | 50.0% | |
| TCTGATTCAGATACCCCTGC+CGG | + | chr5.4:57440962-57440981 | MS.gene26169:CDS | 50.0% | |
| TGGGAACGACACAACAATGG+TGG | + | chr5.4:57440736-57440755 | MS.gene26169:CDS | 50.0% | |
| TTCCTTGTGCAGTGGCTTGA+AGG | - | chr5.4:57441649-57441668 | None:intergenic | 50.0% | |
| ! | ACTGGTATGGACAGCACTGA+TGG | - | chr5.4:57441008-57441027 | None:intergenic | 50.0% |
| !! | ACAGCACTGATGGATGAGAC+CGG | - | chr5.4:57440998-57441017 | None:intergenic | 50.0% |
| !! | ATCGGCTTCCGTTTTGGTCT+TGG | - | chr5.4:57440782-57440801 | None:intergenic | 50.0% |
| !! | GGATGAATCGGCTTCCGTTT+TGG | - | chr5.4:57440788-57440807 | None:intergenic | 50.0% |
| !!! | TTCCGTTTTGGTCTTGGAGG+TGG | - | chr5.4:57440776-57440795 | None:intergenic | 50.0% |
| ACCACGCTGAAGTTGCTGCA+TGG | - | chr5.4:57441568-57441587 | None:intergenic | 55.0% | |
| CATCACAACGCGGCCATGAT+TGG | + | chr5.4:57441241-57441260 | MS.gene26169:intron | 55.0% | |
| CCAACTTGGAACAGCCACTG+AGG | + | chr5.4:57440849-57440868 | MS.gene26169:CDS | 55.0% | |
| CCTCAGTGGCTGTTCCAAGT+TGG | - | chr5.4:57440852-57440871 | None:intergenic | 55.0% | |
| CGACAGTAACAGACGAGAGG+AGG | + | chr5.4:57441934-57441953 | MS.gene26169:CDS | 55.0% | |
| CGAGCCTGGCGAAAAATCGA+AGG | + | chr5.4:57440343-57440362 | MS.gene26169:CDS | 55.0% | |
| TGAGACCGGGGACAAACTTC+CGG | - | chr5.4:57440984-57441003 | None:intergenic | 55.0% | |
| !! | AGCACTGATGGATGAGACCG+GGG | - | chr5.4:57440996-57441015 | None:intergenic | 55.0% |
| !! | CAGCACTGATGGATGAGACC+GGG | - | chr5.4:57440997-57441016 | None:intergenic | 55.0% |
| !!! | GGCTTCCGTTTTGGTCTTGG+AGG | - | chr5.4:57440779-57440798 | None:intergenic | 55.0% |
| CCACTGCACAAGGAACCCGA+GGG | + | chr5.4:57441654-57441673 | MS.gene26169:CDS | 60.0% | |
| CGCTGAAGTTGCTGCATGGC+AGG | - | chr5.4:57441564-57441583 | None:intergenic | 60.0% | |
| GCCATGCAGCAACTTCAGCG+TGG | + | chr5.4:57441564-57441583 | MS.gene26169:CDS | 60.0% | |
| GGCCTTCAAGCCACTGCACA+AGG | + | chr5.4:57441644-57441663 | MS.gene26169:CDS | 60.0% | |
| ACCGGGGACAAACTTCCGGC+AGG | - | chr5.4:57440980-57440999 | None:intergenic | 65.0% | |
| CCCTCGGGTTCCTTGTGCAG+TGG | - | chr5.4:57441657-57441676 | None:intergenic | 65.0% | |
| CCCTGCCGGAAGTTTGTCCC+CGG | + | chr5.4:57440976-57440995 | MS.gene26169:CDS | 65.0% | |
| CCGGGGACAAACTTCCGGCA+GGG | - | chr5.4:57440979-57440998 | None:intergenic | 65.0% | |
| CGGGGACAAACTTCCGGCAG+GGG | - | chr5.4:57440978-57440997 | None:intergenic | 65.0% | |
| GCCACTGCACAAGGAACCCG+AGG | + | chr5.4:57441653-57441672 | MS.gene26169:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 57439268 | 57441986 | 57439268 | ID=MS.gene26169 |
| chr5.4 | mRNA | 57439268 | 57441986 | 57439268 | ID=MS.gene26169.t1;Parent=MS.gene26169 |
| chr5.4 | exon | 57439268 | 57439279 | 57439268 | ID=MS.gene26169.t1.exon1;Parent=MS.gene26169.t1 |
| chr5.4 | CDS | 57439268 | 57439279 | 57439268 | ID=cds.MS.gene26169.t1;Parent=MS.gene26169.t1 |
| chr5.4 | exon | 57440053 | 57440136 | 57440053 | ID=MS.gene26169.t1.exon2;Parent=MS.gene26169.t1 |
| chr5.4 | CDS | 57440053 | 57440136 | 57440053 | ID=cds.MS.gene26169.t1;Parent=MS.gene26169.t1 |
| chr5.4 | exon | 57440253 | 57440364 | 57440253 | ID=MS.gene26169.t1.exon3;Parent=MS.gene26169.t1 |
| chr5.4 | CDS | 57440253 | 57440364 | 57440253 | ID=cds.MS.gene26169.t1;Parent=MS.gene26169.t1 |
| chr5.4 | exon | 57440495 | 57440556 | 57440495 | ID=MS.gene26169.t1.exon4;Parent=MS.gene26169.t1 |
| chr5.4 | CDS | 57440495 | 57440556 | 57440495 | ID=cds.MS.gene26169.t1;Parent=MS.gene26169.t1 |
| chr5.4 | exon | 57440719 | 57441132 | 57440719 | ID=MS.gene26169.t1.exon5;Parent=MS.gene26169.t1 |
| chr5.4 | CDS | 57440719 | 57441132 | 57440719 | ID=cds.MS.gene26169.t1;Parent=MS.gene26169.t1 |
| chr5.4 | exon | 57441408 | 57441986 | 57441408 | ID=MS.gene26169.t1.exon6;Parent=MS.gene26169.t1 |
| chr5.4 | CDS | 57441408 | 57441986 | 57441408 | ID=cds.MS.gene26169.t1;Parent=MS.gene26169.t1 |
| Gene Sequence |
| Protein sequence |
