Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26238.t1 | XP_003616071.2 | 87.7 | 154 | 14 | 3 | 1 | 151 | 9 | 160 | 2.00E-68 | 269.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26238.t1 | Q9FNN6 | 34.0 | 159 | 87 | 4 | 13 | 154 | 12 | 169 | 2.2e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26238.t1 | G7K5U8 | 87.7 | 154 | 14 | 3 | 1 | 151 | 9 | 160 | 1.5e-68 | 269.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26238.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26238.t1 | MTR_5g075790 | 87.662 | 154 | 14 | 3 | 1 | 151 | 9 | 160 | 4.79e-92 | 271 |
| MS.gene26238.t1 | MTR_5g075760 | 84.314 | 153 | 21 | 2 | 1 | 151 | 1 | 152 | 2.62e-89 | 264 |
| MS.gene26238.t1 | MTR_1g083180 | 54.255 | 94 | 43 | 0 | 62 | 155 | 19 | 112 | 3.21e-26 | 101 |
| MS.gene26238.t1 | MTR_1g111830 | 34.328 | 201 | 105 | 7 | 9 | 191 | 20 | 211 | 4.16e-26 | 103 |
| MS.gene26238.t1 | MTR_8g063870 | 40.132 | 152 | 81 | 6 | 10 | 159 | 5 | 148 | 1.03e-24 | 100 |
| MS.gene26238.t1 | MTR_8g063600 | 40.268 | 149 | 79 | 5 | 8 | 148 | 5 | 151 | 2.17e-24 | 99.4 |
| MS.gene26238.t1 | MTR_3g462790 | 35.976 | 164 | 85 | 7 | 4 | 150 | 34 | 194 | 2.19e-19 | 86.3 |
| MS.gene26238.t1 | MTR_7g067080 | 35.256 | 156 | 82 | 6 | 12 | 150 | 34 | 187 | 3.68e-18 | 82.8 |
| MS.gene26238.t1 | MTR_4g111975 | 30.220 | 182 | 87 | 5 | 13 | 154 | 8 | 189 | 1.22e-17 | 81.3 |
| MS.gene26238.t1 | MTR_5g069710 | 34.375 | 160 | 86 | 7 | 7 | 150 | 23 | 179 | 1.91e-17 | 80.9 |
| MS.gene26238.t1 | MTR_5g088010 | 37.288 | 118 | 68 | 4 | 66 | 181 | 26 | 139 | 2.23e-16 | 77.0 |
| MS.gene26238.t1 | MTR_5g027570 | 51.282 | 78 | 37 | 1 | 105 | 181 | 93 | 170 | 2.88e-16 | 76.3 |
| MS.gene26238.t1 | MTR_5g081860 | 32.738 | 168 | 98 | 7 | 1 | 155 | 12 | 177 | 2.95e-15 | 73.9 |
| MS.gene26238.t1 | MTR_5g088060 | 48.101 | 79 | 39 | 2 | 105 | 181 | 273 | 351 | 5.17e-14 | 72.0 |
| MS.gene26238.t1 | MTR_5g488160 | 48.101 | 79 | 39 | 2 | 105 | 181 | 273 | 351 | 5.17e-14 | 72.0 |
| MS.gene26238.t1 | MTR_1589s0010 | 30.400 | 125 | 86 | 1 | 147 | 270 | 135 | 259 | 1.68e-13 | 69.3 |
| MS.gene26238.t1 | MTR_1g050895 | 28.947 | 114 | 81 | 0 | 157 | 270 | 90 | 203 | 1.08e-12 | 65.9 |
| MS.gene26238.t1 | MTR_1g050885 | 28.947 | 114 | 81 | 0 | 157 | 270 | 90 | 203 | 1.08e-12 | 65.9 |
| MS.gene26238.t1 | MTR_1g050875 | 28.947 | 114 | 81 | 0 | 157 | 270 | 90 | 203 | 1.08e-12 | 65.9 |
| MS.gene26238.t1 | MTR_4g107230 | 37.000 | 100 | 54 | 3 | 54 | 149 | 36 | 130 | 3.64e-12 | 65.5 |
| MS.gene26238.t1 | MTR_5g027550 | 56.250 | 48 | 20 | 1 | 105 | 151 | 78 | 125 | 5.75e-12 | 64.3 |
| MS.gene26238.t1 | MTR_2g090305 | 60.870 | 46 | 17 | 1 | 106 | 150 | 30 | 75 | 1.70e-11 | 62.0 |
| MS.gene26238.t1 | MTR_8g101650 | 38.542 | 96 | 51 | 3 | 94 | 188 | 97 | 185 | 3.04e-11 | 62.8 |
| MS.gene26238.t1 | MTR_5g037080 | 50.000 | 56 | 27 | 1 | 96 | 150 | 94 | 149 | 6.02e-11 | 62.0 |
| MS.gene26238.t1 | MTR_3g104370 | 41.837 | 98 | 51 | 3 | 106 | 199 | 93 | 188 | 7.41e-11 | 61.2 |
| MS.gene26238.t1 | MTR_1g053420 | 33.010 | 103 | 69 | 0 | 170 | 272 | 162 | 264 | 8.35e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26238.t1 | AT5G04760 | 36.646 | 161 | 73 | 4 | 10 | 154 | 3 | 150 | 5.10e-22 | 91.7 |
| MS.gene26238.t1 | AT5G08520 | 35.404 | 161 | 82 | 5 | 13 | 154 | 12 | 169 | 2.04e-21 | 91.7 |
| MS.gene26238.t1 | AT3G10580 | 38.194 | 144 | 74 | 4 | 13 | 150 | 8 | 142 | 4.20e-21 | 90.1 |
| MS.gene26238.t1 | AT3G10580 | 38.194 | 144 | 74 | 4 | 13 | 150 | 8 | 142 | 7.90e-21 | 89.7 |
| MS.gene26238.t1 | AT5G23650 | 37.267 | 161 | 80 | 6 | 13 | 154 | 13 | 171 | 5.91e-19 | 85.5 |
| MS.gene26238.t1 | AT4G09450 | 37.857 | 140 | 77 | 4 | 12 | 149 | 6 | 137 | 8.78e-18 | 79.7 |
| MS.gene26238.t1 | AT2G38090 | 32.727 | 165 | 87 | 5 | 9 | 150 | 25 | 188 | 6.11e-17 | 79.3 |
| MS.gene26238.t1 | AT1G49010 | 28.378 | 222 | 110 | 8 | 13 | 197 | 8 | 217 | 1.48e-16 | 78.6 |
| MS.gene26238.t1 | AT5G05790 | 31.613 | 155 | 88 | 3 | 9 | 149 | 27 | 177 | 2.98e-16 | 77.0 |
| MS.gene26238.t1 | AT5G05790 | 31.613 | 155 | 88 | 3 | 9 | 149 | 27 | 177 | 2.98e-16 | 77.0 |
| MS.gene26238.t1 | AT3G11280 | 35.099 | 151 | 74 | 6 | 13 | 149 | 33 | 173 | 4.73e-15 | 73.6 |
| MS.gene26238.t1 | AT3G11280 | 35.099 | 151 | 74 | 6 | 13 | 149 | 33 | 173 | 4.73e-15 | 73.6 |
| MS.gene26238.t1 | AT1G70000 | 46.914 | 81 | 41 | 2 | 71 | 150 | 66 | 145 | 1.57e-12 | 66.2 |
| MS.gene26238.t1 | AT1G70000 | 46.914 | 81 | 41 | 2 | 71 | 150 | 66 | 145 | 1.57e-12 | 66.2 |
| MS.gene26238.t1 | AT5G47390 | 37.113 | 97 | 42 | 3 | 76 | 171 | 79 | 157 | 8.18e-12 | 65.1 |
| MS.gene26238.t1 | AT3G10590 | 28.205 | 156 | 92 | 4 | 8 | 146 | 2 | 154 | 1.03e-11 | 63.2 |
| MS.gene26238.t1 | AT5G61620 | 46.575 | 73 | 34 | 2 | 100 | 171 | 104 | 172 | 5.16e-11 | 62.4 |
Find 50 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGACAGCATCCCATTTA+AGG | 0.149200 | 5.4:-58639123 | MS.gene26238:intron |
| TCACATGCAACTTCCTTAAA+TGG | 0.175612 | 5.4:+58639110 | None:intergenic |
| GATGAATGTTGTTTGATTAT+AGG | 0.203513 | 5.4:-58638782 | MS.gene26238:CDS |
| AAGCATTTCCTTCACATAAA+TGG | 0.223126 | 5.4:-58640216 | MS.gene26238:intron |
| TTCTTAGTCTTATTCTTAGT+TGG | 0.323967 | 5.4:+58640933 | None:intergenic |
| GAGGAATGCCCGATGATCTT+AGG | 0.346880 | 5.4:-58638926 | MS.gene26238:CDS |
| AGATTCATAAGAAGGGAAAT+TGG | 0.369394 | 5.4:-58640299 | MS.gene26238:CDS |
| AATAGCAAGAAAATCACCTT+TGG | 0.392842 | 5.4:-58638836 | MS.gene26238:CDS |
| GCTTTAGATGTTTCTAAGAA+AGG | 0.398687 | 5.4:+58638899 | None:intergenic |
| TTAGTCTTATTCTTAGTTGG+AGG | 0.415408 | 5.4:+58640936 | None:intergenic |
| GAAAATCTTGCTCTTGTTTG+CGG | 0.422028 | 5.4:-58641101 | MS.gene26238:CDS |
| CACATGCAACTTCCTTAAAT+GGG | 0.465060 | 5.4:+58639111 | None:intergenic |
| GGGAATCGAGATTCATAAGA+AGG | 0.470381 | 5.4:-58640307 | MS.gene26238:CDS |
| TTTGAAGTCATCGGTACAAA+GGG | 0.475521 | 5.4:-58638953 | MS.gene26238:CDS |
| ATAGCAAGAAAATCACCTTT+GGG | 0.475870 | 5.4:-58638835 | MS.gene26238:CDS |
| GATTGAGAAGTCGTCTACTT+TGG | 0.478619 | 5.4:-58639065 | MS.gene26238:CDS |
| GCAATCCAAGATTGAAAAGA+AGG | 0.483901 | 5.4:-58638813 | MS.gene26238:CDS |
| GCATGGCTAGCACATTGACT+TGG | 0.494579 | 5.4:+58640243 | None:intergenic |
| ATGAACGACACAAATAATGA+TGG | 0.501312 | 5.4:-58641212 | MS.gene26238:CDS |
| TAAAGCAAATATTGATGTTG+TGG | 0.502113 | 5.4:-58638882 | MS.gene26238:CDS |
| CTAAGAAAGTGGTGAAACAT+TGG | 0.507701 | 5.4:-58640917 | MS.gene26238:CDS |
| AAGGTCTTCCTAAGATCATC+GGG | 0.510135 | 5.4:+58638918 | None:intergenic |
| TTGATGTACCATTTATGTGA+AGG | 0.524593 | 5.4:+58640208 | None:intergenic |
| ACTTTGGTCACGTTGGCAGA+TGG | 0.530474 | 5.4:-58639049 | MS.gene26238:CDS |
| GCAAATATTGATGTTGTGGA+AGG | 0.530645 | 5.4:-58638878 | MS.gene26238:CDS |
| TAAGAATAAGACTAAGAAAG+TGG | 0.531612 | 5.4:-58640928 | MS.gene26238:CDS |
| AAAGGTCTTCCTAAGATCAT+CGG | 0.531970 | 5.4:+58638917 | None:intergenic |
| TTGTTCGTCTAGACAAGCTA+TGG | 0.533727 | 5.4:-58638988 | MS.gene26238:CDS |
| ATGTGACTAGAAAACTAGAA+AGG | 0.536076 | 5.4:-58639093 | MS.gene26238:CDS |
| CATCGGTACAAAGGGAAAAG+AGG | 0.538839 | 5.4:-58638945 | MS.gene26238:CDS |
| AGGAAGTACAAGAAGGTCGA+TGG | 0.560186 | 5.4:-58641124 | MS.gene26238:CDS |
| CGTTCTCTTTGAATATCTTG+AGG | 0.562741 | 5.4:-58641144 | MS.gene26238:CDS |
| TGAAGTAAAAGAACACTATG+AGG | 0.565587 | 5.4:-58641066 | MS.gene26238:CDS |
| TTCAATCTTGGATTGCCCAA+AGG | 0.568217 | 5.4:+58638820 | None:intergenic |
| GAAAATCAAAGGAGTGGACA+TGG | 0.573641 | 5.4:-58641190 | MS.gene26238:CDS |
| TGGTCACGTTGGCAGATGGA+TGG | 0.574637 | 5.4:-58639045 | MS.gene26238:CDS |
| TAAGACAGTCTGTGGAGGAG+TGG | 0.579272 | 5.4:-58639020 | MS.gene26238:CDS |
| CTCAAGATATTCAAAGAGAA+CGG | 0.580373 | 5.4:+58641145 | None:intergenic |
| GGAATCGAGATTCATAAGAA+GGG | 0.583688 | 5.4:-58640306 | MS.gene26238:CDS |
| AAATAATGATGGAAAATCAA+AGG | 0.595595 | 5.4:-58641201 | MS.gene26238:CDS |
| GCATGACTTAGCACTCATTG+AGG | 0.603466 | 5.4:-58641036 | MS.gene26238:CDS |
| GGATGGTATAAGACAGTCTG+TGG | 0.607791 | 5.4:-58639028 | MS.gene26238:CDS |
| GACTTAGCACTCATTGAGGA+AGG | 0.612605 | 5.4:-58641032 | MS.gene26238:CDS |
| ATGATGGAAAATCAAAGGAG+TGG | 0.613850 | 5.4:-58641196 | MS.gene26238:CDS |
| TATCTTGAGGAAGTACAAGA+AGG | 0.618040 | 5.4:-58641131 | MS.gene26238:CDS |
| GTCGTCTACTTTGGTCACGT+TGG | 0.619931 | 5.4:-58639056 | MS.gene26238:CDS |
| GGAAGTACAAGAAGGTCGAT+GGG | 0.635752 | 5.4:-58641123 | MS.gene26238:CDS |
| AAAATCAAAGGAGTGGACAT+GGG | 0.673138 | 5.4:-58641189 | MS.gene26238:CDS |
| TGGTATAAGACAGTCTGTGG+AGG | 0.680242 | 5.4:-58639025 | MS.gene26238:CDS |
| ATTGGAGTGAAGAAGAACAC+AGG | 0.701675 | 5.4:-58640899 | MS.gene26238:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATCAACAAATAAAAAAA+GGG | - | chr5.4:58639313-58639332 | MS.gene26238:intron | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | - | chr5.4:58639312-58639331 | MS.gene26238:intron | 10.0% |
| !!! | TTTTTTTATTTGTTGATAAA+AGG | + | chr5.4:58639313-58639332 | None:intergenic | 10.0% |
| !! | AAATAATCTTCAAATAACAA+AGG | + | chr5.4:58640507-58640526 | None:intergenic | 15.0% |
| !! | ATACATATAGCATAAAAAAT+AGG | + | chr5.4:58640339-58640358 | None:intergenic | 15.0% |
| !! | TAGGAAAGAAATATAAAAAA+TGG | + | chr5.4:58640466-58640485 | None:intergenic | 15.0% |
| !! | TTGAATTTCAACATTTAATT+CGG | + | chr5.4:58639966-58639985 | None:intergenic | 15.0% |
| !!! | AGTCAATTTAATTTATATCA+TGG | + | chr5.4:58639627-58639646 | None:intergenic | 15.0% |
| !!! | ATTTGAAGATTATTTGATTT+TGG | - | chr5.4:58640512-58640531 | MS.gene26238:intron | 15.0% |
| !!! | GATACGTTTATTTTTTTATT+AGG | - | chr5.4:58639384-58639403 | MS.gene26238:intron | 15.0% |
| !!! | TATTCATCAATAAATTTGTT+CGG | - | chr5.4:58640165-58640184 | MS.gene26238:intron | 15.0% |
| !!! | TCTTTGAAATAAAAGAATAT+CGG | - | chr5.4:58640736-58640755 | MS.gene26238:intron | 15.0% |
| !!! | TTAACAATCGATTTTTTAAA+AGG | + | chr5.4:58640258-58640277 | None:intergenic | 15.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | + | chr5.4:58639215-58639234 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATCGATTGTTA+AGG | - | chr5.4:58640257-58640276 | MS.gene26238:CDS | 15.0% |
| !! | AAGAAATACAAAATATCTCT+TGG | + | chr5.4:58640145-58640164 | None:intergenic | 20.0% |
| !! | AGAAATACAAAATATCTCTT+GGG | + | chr5.4:58640144-58640163 | None:intergenic | 20.0% |
| !! | ATACATATAGCATAATTACA+TGG | + | chr5.4:58640411-58640430 | None:intergenic | 20.0% |
| !! | CATTACATTAGAAATTGAAA+AGG | - | chr5.4:58640304-58640323 | MS.gene26238:CDS | 20.0% |
| !! | CTATAAAAAAAAATGATGAG+AGG | + | chr5.4:58639651-58639670 | None:intergenic | 20.0% |
| !! | TACATATAGCATAATTACAT+GGG | + | chr5.4:58640410-58640429 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | - | chr5.4:58639513-58639532 | MS.gene26238:intron | 20.0% |
| !! | TTCAATTTGTATTACTATCA+AGG | - | chr5.4:58639981-58640000 | MS.gene26238:intron | 20.0% |
| !! | TTGAATATGAAAAATAGATG+AGG | - | chr5.4:58640548-58640567 | MS.gene26238:intron | 20.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | - | chr5.4:58638789-58638808 | MS.gene26238:CDS | 20.0% |
| !!! | AATCGATTTTTTAAAAGGAT+CGG | + | chr5.4:58640253-58640272 | None:intergenic | 20.0% |
| !!! | ACAAATGATTTTATTTCGAA+AGG | - | chr5.4:58639003-58639022 | MS.gene26238:CDS | 20.0% |
| !!! | CTCTCATCATTTTTTTTTAT+AGG | - | chr5.4:58639649-58639668 | MS.gene26238:intron | 20.0% |
| !!! | CTTTTCAATTTCTAATGTAA+TGG | + | chr5.4:58640306-58640325 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | + | chr5.4:58639514-58639533 | None:intergenic | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | - | chr5.4:58639663-58639682 | MS.gene26238:intron | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | - | chr5.4:58639662-58639681 | MS.gene26238:intron | 20.0% |
| ! | AAAAATCGATTGTTAAGGAT+TGG | - | chr5.4:58640262-58640281 | MS.gene26238:CDS | 25.0% |
| ! | AAATACAAAATATCTCTTGG+GGG | + | chr5.4:58640142-58640161 | None:intergenic | 25.0% |
| ! | AATATGAAAAATAGATGAGG+TGG | - | chr5.4:58640551-58640570 | MS.gene26238:intron | 25.0% |
| ! | ATTGTGTACAATTGTTTACA+TGG | - | chr5.4:58640592-58640611 | MS.gene26238:intron | 25.0% |
| ! | GAAATACAAAATATCTCTTG+GGG | + | chr5.4:58640143-58640162 | None:intergenic | 25.0% |
| ! | TAAAGCAAATATTGATGTTG+TGG | - | chr5.4:58641108-58641127 | MS.gene26238:CDS | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | - | chr5.4:58639062-58639081 | MS.gene26238:CDS | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | - | chr5.4:58639499-58639518 | MS.gene26238:intron | 25.0% |
| ! | TCAATCAATTTCTCATGTAA+TGG | + | chr5.4:58640362-58640381 | None:intergenic | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | + | chr5.4:58639507-58639526 | None:intergenic | 25.0% |
| ! | TTAGAAATTGAAAAGGTTGA+AGG | - | chr5.4:58640311-58640330 | MS.gene26238:CDS | 25.0% |
| ! | TTCATATTCAATTGTCTTGA+AGG | + | chr5.4:58640539-58640558 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | - | chr5.4:58639580-58639599 | MS.gene26238:intron | 25.0% |
| !! | GATGAATGTTGTTTGATTAT+AGG | - | chr5.4:58641208-58641227 | MS.gene26238:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | - | chr5.4:58639163-58639182 | MS.gene26238:intron | 25.0% |
| !!! | GAAGAACACATTACTTTTTA+CGG | - | chr5.4:58639350-58639369 | MS.gene26238:intron | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | + | chr5.4:58639060-58639079 | None:intergenic | 25.0% |
| AAAGGAGAATCTGCAAAAAA+TGG | + | chr5.4:58640489-58640508 | None:intergenic | 30.0% | |
| AACCATAAAAGTAATGATGC+AGG | + | chr5.4:58639465-58639484 | None:intergenic | 30.0% | |
| AAGCATTTCCTTCACATAAA+TGG | - | chr5.4:58639774-58639793 | MS.gene26238:intron | 30.0% | |
| AATACAAAATATCTCTTGGG+GGG | + | chr5.4:58640141-58640160 | None:intergenic | 30.0% | |
| AATAGCAAGAAAATCACCTT+TGG | - | chr5.4:58641154-58641173 | MS.gene26238:CDS | 30.0% | |
| ACCATAAAAGTAATGATGCA+GGG | + | chr5.4:58639464-58639483 | None:intergenic | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | - | chr5.4:58639691-58639710 | MS.gene26238:intron | 30.0% | |
| AGTAGAATAAAACCACATGT+AGG | + | chr5.4:58640099-58640118 | None:intergenic | 30.0% | |
| ATAGCAAGAAAATCACCTTT+GGG | - | chr5.4:58641155-58641174 | MS.gene26238:CDS | 30.0% | |
| ATGAACGACACAAATAATGA+TGG | - | chr5.4:58638778-58638797 | MS.gene26238:CDS | 30.0% | |
| ATGTGACTAGAAAACTAGAA+AGG | - | chr5.4:58640897-58640916 | MS.gene26238:intron | 30.0% | |
| CTCAAGATATTCAAAGAGAA+CGG | + | chr5.4:58638848-58638867 | None:intergenic | 30.0% | |
| CTTGACACTAACATATGTAT+TGG | - | chr5.4:58639579-58639598 | MS.gene26238:intron | 30.0% | |
| TAAGATACCAAGTTTGTCTT+TGG | - | chr5.4:58640209-58640228 | MS.gene26238:intron | 30.0% | |
| TGAAGTAAAAGAACACTATG+AGG | - | chr5.4:58638924-58638943 | MS.gene26238:CDS | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | - | chr5.4:58639831-58639850 | MS.gene26238:intron | 30.0% | |
| TTCAACATTTAATTCGGATG+AGG | + | chr5.4:58639960-58639979 | None:intergenic | 30.0% | |
| TTGATGTACCATTTATGTGA+AGG | + | chr5.4:58639785-58639804 | None:intergenic | 30.0% | |
| ! | ATGGTATTACAAAGCTTTTG+AGG | + | chr5.4:58640843-58640862 | None:intergenic | 30.0% |
| ! | GCTTTAGATGTTTCTAAGAA+AGG | + | chr5.4:58641094-58641113 | None:intergenic | 30.0% |
| ! | TTATTCTACTTCTTGGGTTT+TGG | - | chr5.4:58640109-58640128 | MS.gene26238:intron | 30.0% |
| ! | TTCTTCCTTCTTTTCAATCT+TGG | + | chr5.4:58641185-58641204 | None:intergenic | 30.0% |
| !! | GAATTGAACTCTTTTGAGTA+TGG | - | chr5.4:58640036-58640055 | MS.gene26238:intron | 30.0% |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | + | chr5.4:58639057-58639076 | None:intergenic | 30.0% |
| !!! | ATTTTATTTTGTGTCCGCTT+GGG | - | chr5.4:58640646-58640665 | MS.gene26238:intron | 30.0% |
| !!! | GTGGTTTTATTCTACTTCTT+GGG | - | chr5.4:58640103-58640122 | MS.gene26238:intron | 30.0% |
| !!! | TATTACAAAGCTTTTGAGGT+TGG | + | chr5.4:58640839-58640858 | None:intergenic | 30.0% |
| !!! | TGTGGTTTTATTCTACTTCT+TGG | - | chr5.4:58640102-58640121 | MS.gene26238:intron | 30.0% |
| !!! | TTGGTTGATTTTGAAGTCAT+CGG | - | chr5.4:58641028-58641047 | MS.gene26238:CDS | 30.0% |
| AAAATCAAAGGAGTGGACAT+GGG | - | chr5.4:58638801-58638820 | MS.gene26238:CDS | 35.0% | |
| AAAGGTCTTCCTAAGATCAT+CGG | + | chr5.4:58641076-58641095 | None:intergenic | 35.0% | |
| AATTGACAGCATCCCATTTA+AGG | - | chr5.4:58640867-58640886 | MS.gene26238:intron | 35.0% | |
| ATCTCATCCAAAGACAAACT+TGG | + | chr5.4:58640219-58640238 | None:intergenic | 35.0% | |
| CACATGCAACTTCCTTAAAT+GGG | + | chr5.4:58640882-58640901 | None:intergenic | 35.0% | |
| CGTTCTCTTTGAATATCTTG+AGG | - | chr5.4:58638846-58638865 | MS.gene26238:CDS | 35.0% | |
| CTAAGAAAGTGGTGAAACAT+TGG | - | chr5.4:58639073-58639092 | MS.gene26238:CDS | 35.0% | |
| CTAATTGTTCTTTACCCAAG+CGG | + | chr5.4:58640663-58640682 | None:intergenic | 35.0% | |
| CTTCAACATTACCTCATTGA+AGG | - | chr5.4:58639830-58639849 | MS.gene26238:intron | 35.0% | |
| GAGAATCTGCAAAAAATGGT+AGG | + | chr5.4:58640485-58640504 | None:intergenic | 35.0% | |
| GCAAATATTGATGTTGTGGA+AGG | - | chr5.4:58641112-58641131 | MS.gene26238:CDS | 35.0% | |
| GCAATCCAAGATTGAAAAGA+AGG | - | chr5.4:58641177-58641196 | MS.gene26238:CDS | 35.0% | |
| GGAATCGAGATTCATAAGAA+GGG | - | chr5.4:58639684-58639703 | MS.gene26238:intron | 35.0% | |
| TATATTCGCGTGAAAACACT+TGG | + | chr5.4:58640434-58640453 | None:intergenic | 35.0% | |
| TCACATGCAACTTCCTTAAA+TGG | + | chr5.4:58640883-58640902 | None:intergenic | 35.0% | |
| TGTCTTTGGATGAGATAGAT+AGG | - | chr5.4:58640223-58640242 | MS.gene26238:CDS | 35.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | - | chr5.4:58638794-58638813 | MS.gene26238:CDS | 35.0% |
| ! | CTTTTATTCGAAGAACACCT+TGG | - | chr5.4:58639236-58639255 | MS.gene26238:intron | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | - | chr5.4:58638889-58638908 | MS.gene26238:CDS | 35.0% |
| ! | GTTCGGATTTTGCAAATGAT+AGG | - | chr5.4:58640182-58640201 | MS.gene26238:intron | 35.0% |
| ! | TATCTTGAGGAAGTACAAGA+AGG | - | chr5.4:58638859-58638878 | MS.gene26238:CDS | 35.0% |
| ! | TCTAGACAAGCTATGGTTTT+TGG | - | chr5.4:58641009-58641028 | MS.gene26238:CDS | 35.0% |
| ! | TTTGAAGTCATCGGTACAAA+GGG | - | chr5.4:58641037-58641056 | MS.gene26238:CDS | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | - | chr5.4:58639250-58639269 | MS.gene26238:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | - | chr5.4:58639251-58639270 | MS.gene26238:intron | 35.0% |
| !! | TCCCTGCATCATTACTTTTA+TGG | - | chr5.4:58639460-58639479 | MS.gene26238:intron | 35.0% |
| !!! | CATTTTATTTTGTGTCCGCT+TGG | - | chr5.4:58640645-58640664 | MS.gene26238:intron | 35.0% |
| !!! | TTTTGAAGTCATCGGTACAA+AGG | - | chr5.4:58641036-58641055 | MS.gene26238:CDS | 35.0% |
| AAATTTCCATCCCATGAGGT+AGG | + | chr5.4:58639903-58639922 | None:intergenic | 40.0% | |
| AAGGTCTTCCTAAGATCATC+GGG | + | chr5.4:58641075-58641094 | None:intergenic | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | + | chr5.4:58639870-58639889 | None:intergenic | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | - | chr5.4:58639091-58639110 | MS.gene26238:CDS | 40.0% | |
| CGCGATTAAGTTTGATGAAG+AGG | - | chr5.4:58640798-58640817 | MS.gene26238:intron | 40.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | - | chr5.4:58638800-58638819 | MS.gene26238:CDS | 40.0% | |
| GATTGAGAAGTCGTCTACTT+TGG | - | chr5.4:58640925-58640944 | MS.gene26238:CDS | 40.0% | |
| GGGAATCGAGATTCATAAGA+AGG | - | chr5.4:58639683-58639702 | MS.gene26238:intron | 40.0% | |
| GGGATGCTGTCAATTATACA+TGG | + | chr5.4:58640862-58640881 | None:intergenic | 40.0% | |
| TTCAATCTTGGATTGCCCAA+AGG | + | chr5.4:58641173-58641192 | None:intergenic | 40.0% | |
| TTCCAAACCTCTTCTCAGTA+AGG | - | chr5.4:58639860-58639879 | MS.gene26238:intron | 40.0% | |
| TTGTTCGTCTAGACAAGCTA+TGG | - | chr5.4:58641002-58641021 | MS.gene26238:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | + | chr5.4:58639767-58639786 | None:intergenic | 40.0% |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | + | chr5.4:58639256-58639275 | None:intergenic | 40.0% |
| ! | TTGAGGTTGGAGAGTTTTTC+TGG | + | chr5.4:58640826-58640845 | None:intergenic | 40.0% |
| ! | TTGCACTCTTTTCCTACATG+TGG | - | chr5.4:58640084-58640103 | MS.gene26238:intron | 40.0% |
| AGAGCTGGAACATAGAGAAG+AGG | + | chr5.4:58639930-58639949 | None:intergenic | 45.0% | |
| CATCGGTACAAAGGGAAAAG+AGG | - | chr5.4:58641045-58641064 | MS.gene26238:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | + | chr5.4:58639195-58639214 | None:intergenic | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | - | chr5.4:58638958-58638977 | MS.gene26238:CDS | 45.0% | |
| GAGCTGGAACATAGAGAAGA+GGG | + | chr5.4:58639929-58639948 | None:intergenic | 45.0% | |
| GCATGACTTAGCACTCATTG+AGG | - | chr5.4:58638954-58638973 | MS.gene26238:CDS | 45.0% | |
| GGAATGATCTCCCTTCAATG+AGG | + | chr5.4:58639844-58639863 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | + | chr5.4:58639945-58639964 | None:intergenic | 45.0% | |
| GGATGGTATAAGACAGTCTG+TGG | - | chr5.4:58640962-58640981 | MS.gene26238:CDS | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | + | chr5.4:58639865-58639884 | None:intergenic | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | + | chr5.4:58639907-58639926 | None:intergenic | 45.0% | |
| TGGTATAAGACAGTCTGTGG+AGG | - | chr5.4:58640965-58640984 | MS.gene26238:CDS | 45.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | - | chr5.4:58638866-58638885 | MS.gene26238:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | - | chr5.4:58638867-58638886 | MS.gene26238:CDS | 45.0% |
| ACTTTGGTCACGTTGGCAGA+TGG | - | chr5.4:58640941-58640960 | MS.gene26238:CDS | 50.0% | |
| CTGGAACATAGAGAAGAGGG+TGG | + | chr5.4:58639926-58639945 | None:intergenic | 50.0% | |
| GAGGAATGCCCGATGATCTT+AGG | - | chr5.4:58641064-58641083 | MS.gene26238:CDS | 50.0% | |
| GTCGTCTACTTTGGTCACGT+TGG | - | chr5.4:58640934-58640953 | MS.gene26238:CDS | 50.0% | |
| TAAGACAGTCTGTGGAGGAG+TGG | - | chr5.4:58640970-58640989 | MS.gene26238:CDS | 50.0% | |
| TCCATCTCCTCCTACCTCAT+GGG | - | chr5.4:58639890-58639909 | MS.gene26238:intron | 50.0% | |
| TGTGGACGAGTCCTTATGCA+TGG | - | chr5.4:58639181-58639200 | MS.gene26238:intron | 50.0% | |
| TTCCATCTCCTCCTACCTCA+TGG | - | chr5.4:58639889-58639908 | MS.gene26238:intron | 50.0% | |
| TTTCCATCCCATGAGGTAGG+AGG | + | chr5.4:58639900-58639919 | None:intergenic | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | + | chr5.4:58639750-58639769 | None:intergenic | 50.0% |
| TCCCATGAGGTAGGAGGAGA+TGG | + | chr5.4:58639894-58639913 | None:intergenic | 55.0% | |
| TCTCCTCCTACCTCATGGGA+TGG | - | chr5.4:58639894-58639913 | MS.gene26238:intron | 55.0% | |
| TGGTCACGTTGGCAGATGGA+TGG | - | chr5.4:58640945-58640964 | MS.gene26238:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 58638778 | 58641234 | 58638778 | ID=MS.gene26238 |
| chr5.4 | mRNA | 58638778 | 58641234 | 58638778 | ID=MS.gene26238.t1;Parent=MS.gene26238 |
| chr5.4 | exon | 58640900 | 58641234 | 58640900 | ID=MS.gene26238.t1.exon1;Parent=MS.gene26238.t1 |
| chr5.4 | CDS | 58640900 | 58641234 | 58640900 | ID=cds.MS.gene26238.t1;Parent=MS.gene26238.t1 |
| chr5.4 | exon | 58640217 | 58640341 | 58640217 | ID=MS.gene26238.t1.exon2;Parent=MS.gene26238.t1 |
| chr5.4 | CDS | 58640217 | 58640341 | 58640217 | ID=cds.MS.gene26238.t1;Parent=MS.gene26238.t1 |
| chr5.4 | exon | 58638778 | 58639136 | 58638778 | ID=MS.gene26238.t1.exon3;Parent=MS.gene26238.t1 |
| chr5.4 | CDS | 58638778 | 58639136 | 58638778 | ID=cds.MS.gene26238.t1;Parent=MS.gene26238.t1 |
| Gene Sequence |
| Protein sequence |
