AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26258

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26258.t1 MTR_5g075410 95.929 786 32 0 1 786 1 786 0.0 1531
MS.gene26258.t1 MTR_3g467380 56.190 840 298 14 1 778 1 832 0.0 855
MS.gene26258.t1 MTR_4g028130 42.584 836 399 11 1 777 1 814 0.0 613
MS.gene26258.t1 MTR_4g028130 41.268 836 374 11 1 777 1 778 0.0 582
MS.gene26258.t1 MTR_4g028130 45.008 591 291 7 1 578 1 570 1.12e-159 478
MS.gene26258.t1 MTR_2g011940 41.241 548 222 12 283 774 305 808 3.62e-110 357
MS.gene26258.t1 MTR_2g011940 45.455 121 49 4 6 119 22 132 1.81e-22 103
MS.gene26258.t1 MTR_2g011940 47.138 297 117 4 283 578 314 571 6.84e-78 264
MS.gene26258.t1 MTR_2g011940 45.455 121 49 4 6 119 31 141 1.91e-22 103
MS.gene26258.t1 MTR_2g011940 47.138 297 117 4 283 578 314 571 1.61e-77 263
MS.gene26258.t1 MTR_2g011940 45.455 121 49 4 6 119 31 141 2.87e-22 102
MS.gene26258.t1 MTR_7g073240 49.189 185 89 3 254 434 52 235 6.07e-51 182
MS.gene26258.t1 MTR_7g073240 54.054 74 33 1 506 578 245 318 2.68e-16 81.6
MS.gene26258.t1 MTR_7g083700 48.235 85 43 1 321 404 126 210 1.27e-18 88.2
MS.gene26258.t1 MTR_7g059330 39.216 102 60 2 321 420 623 724 1.94e-15 81.3
MS.gene26258.t1 MTR_1g058350 37.037 135 64 6 302 422 54 181 5.67e-15 77.4
MS.gene26258.t1 MTR_5g053920 41.818 110 47 4 321 417 194 299 2.88e-14 75.9
MS.gene26258.t1 MTR_7g117455 38.462 91 51 3 321 408 117 205 2.28e-13 73.6
MS.gene26258.t1 MTR_7g105370 41.176 102 50 5 326 421 65 162 6.26e-13 70.9
MS.gene26258.t1 MTR_1g093600 31.429 140 76 5 321 442 191 328 1.93e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26258.t1 AT4G32010 41.153 746 314 15 3 706 4 666 8.58e-175 522
MS.gene26258.t1 AT2G30470 40.564 816 360 19 1 774 6 738 5.08e-173 518
MS.gene26258.t1 AT4G32010 40.933 750 314 16 3 706 4 670 6.87e-173 517
MS.gene26258.t1 AT4G21550 33.333 453 260 10 3 437 14 442 4.71e-69 237
MS.gene26258.t1 AT4G21550 33.481 451 258 10 5 437 16 442 3.98e-68 235
MS.gene26258.t1 AT4G21550 33.333 453 260 10 3 437 14 442 4.91e-68 239
MS.gene26258.t1 AT4G21550 40.336 119 56 4 657 774 551 655 2.63e-12 70.9
MS.gene26258.t1 AT3G26790 45.882 85 45 1 321 404 91 175 5.96e-18 86.3
MS.gene26258.t1 AT3G24650 41.176 102 58 2 321 420 571 672 6.65e-16 82.4
MS.gene26258.t1 AT1G28300 41.414 99 56 2 321 418 170 267 1.69e-15 79.3
MS.gene26258.t1 AT5G06250 35.135 148 73 6 310 439 37 179 2.40e-15 77.4
MS.gene26258.t1 AT5G06250 35.135 148 73 6 310 439 37 179 2.53e-15 77.8
MS.gene26258.t1 AT4G01500 43.820 89 47 2 321 408 35 121 2.99e-15 78.2
MS.gene26258.t1 AT5G06250 35.135 148 73 6 310 439 37 179 3.16e-15 77.4
MS.gene26258.t1 AT5G06250 35.135 148 73 6 310 439 37 179 3.22e-15 77.0
MS.gene26258.t1 AT2G36080 39.815 108 56 4 321 421 37 142 3.35e-15 74.7
MS.gene26258.t1 AT2G36080 39.815 108 56 4 321 421 37 142 3.35e-15 74.7
MS.gene26258.t1 AT5G06250 35.135 148 73 6 310 439 37 179 4.58e-15 76.6
MS.gene26258.t1 AT2G36080 39.815 108 56 4 321 421 37 142 6.54e-15 75.9
MS.gene26258.t1 AT2G36080 39.815 108 56 4 321 421 37 142 6.62e-15 75.5
MS.gene26258.t1 AT2G46870 40.659 91 49 3 321 408 34 122 7.92e-15 76.6
MS.gene26258.t1 AT1G13260 42.391 92 47 3 321 408 187 276 8.83e-15 77.0
MS.gene26258.t1 AT3G25730 38.318 107 57 4 321 420 182 286 2.89e-14 75.5
MS.gene26258.t1 AT3G61970 38.298 94 50 3 321 408 22 113 7.91e-14 73.6
MS.gene26258.t1 AT1G68840 41.935 93 47 3 321 408 187 277 2.12e-13 72.8
MS.gene26258.t1 AT1G68840 41.935 93 47 3 321 408 187 277 2.12e-13 72.8
MS.gene26258.t1 AT1G01030 40.860 93 46 4 321 408 55 143 5.01e-13 71.6
MS.gene26258.t1 AT1G01030 40.860 93 46 4 321 408 55 143 5.70e-13 71.6
MS.gene26258.t1 AT3G11580 36.752 117 55 5 321 421 28 141 6.43e-13 70.1
MS.gene26258.t1 AT3G11580 36.752 117 55 5 321 421 28 141 5.23e-12 67.0
MS.gene26258.t1 AT3G11580 36.752 117 55 5 321 421 28 141 5.23e-12 67.0
MS.gene26258.t1 AT3G11580 36.752 117 55 5 321 421 28 141 5.23e-12 67.0
MS.gene26258.t1 AT3G11580 36.752 117 55 5 321 421 28 141 1.14e-11 67.8

Find 198 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAATTGTTACAATATT+TGG 0.086549 5.4:-59057012 None:intergenic
ATTCAAGAACACAAGCTTTC+AGG 0.213336 5.4:+59057943 MS.gene26258:CDS
CACTTAACTTCTTCGGTCTT+TGG 0.232028 5.4:-59055172 None:intergenic
ACTTAACACCTTCTCAAATA+AGG 0.237548 5.4:-59056003 None:intergenic
CCCGCATTTGTTGCAGAGTT+TGG 0.256841 5.4:-59053450 None:intergenic
TATGATTAATTTGATTGTTT+TGG 0.258238 5.4:-59058224 None:intergenic
CAACTGCTTCAGATTCTAAT+TGG 0.263143 5.4:-59058197 None:intergenic
TTCTAACGGCATTTCGATAA+AGG 0.267420 5.4:+59056651 MS.gene26258:CDS
ATCAGTTACTTTCTCGATAC+TGG 0.269074 5.4:+59055551 MS.gene26258:CDS
TTTACAGTTCCAAGATATAA+TGG 0.271409 5.4:+59056229 MS.gene26258:CDS
TATACCTCAGCACACGCTTT+TGG 0.274011 5.4:-59056062 None:intergenic
TGAAGACTTTCTTGTTCCTT+TGG 0.285526 5.4:-59057533 None:intergenic
AAGAAGAGGTCTCGCAATAT+TGG 0.296576 5.4:+59056886 MS.gene26258:CDS
TACATCCTACTGTTGTTATT+AGG 0.308177 5.4:-59056284 None:intergenic
AACGGGGAACCTTACTTAAA+TGG 0.309832 5.4:+59056751 MS.gene26258:CDS
ACGGATGAGGGAAGCCTAAA+TGG 0.318513 5.4:+59058300 MS.gene26258:CDS
CAATTAAATGCTGGTGATAC+TGG 0.325898 5.4:+59056344 MS.gene26258:CDS
AATGTAGTAAATGCTGTTAA+AGG 0.330641 5.4:-59055247 None:intergenic
CATCATATTCTTCAAATACT+TGG 0.347609 5.4:-59057035 None:intergenic
TTACAGTTCCAAGATATAAT+GGG 0.352438 5.4:+59056230 MS.gene26258:CDS
CCTCAGAATTTGAACTCATT+AGG 0.359994 5.4:+59056694 MS.gene26258:CDS
AGGATACTGAAAATCATAAT+AGG 0.362554 5.4:+59054972 MS.gene26258:intron
CCTCAAGCTGACCTCCATTT+AGG 0.367489 5.4:-59058314 None:intergenic
GCAAACATCTCAGTCTATAT+TGG 0.370039 5.4:+59055429 MS.gene26258:CDS
AAATTCCACCGTCATGAAAC+TGG 0.376289 5.4:+59054579 MS.gene26258:CDS
CTGGTGGAACAAGCTGTTAA+AGG 0.377011 5.4:+59055058 MS.gene26258:CDS
GCCTAGTGCTGCGGGACAAT+TGG 0.377079 5.4:+59058344 MS.gene26258:CDS
TTCAATCAATGAAAGGTAAC+GGG 0.377988 5.4:+59056734 MS.gene26258:CDS
CTTGTTCCTTTGGACCGAGC+TGG 0.382544 5.4:-59057523 None:intergenic
TGAGGTGCACCAGAAAAGTT+TGG 0.383323 5.4:-59056676 None:intergenic
TAATATGACTAGTCATGCTT+TGG 0.383891 5.4:-59058420 None:intergenic
GATGGCATGGTTTCATGTAT+TGG 0.390905 5.4:+59055148 MS.gene26258:CDS
AAAACCAGTGCCTCTCCATC+AGG 0.394979 5.4:+59057177 MS.gene26258:CDS
ACATTCAGAACATCTGCGTT+TGG 0.398523 5.4:+59056774 MS.gene26258:CDS
GAACATCTGCGTTTGGGTAA+TGG 0.398608 5.4:+59056781 MS.gene26258:CDS
CAATTCTACACAACTGCATA+AGG 0.399404 5.4:-59055084 None:intergenic
CCGAGTGATGCAGGTCGAAT+TGG 0.400991 5.4:+59056026 MS.gene26258:CDS
CATTCAGAACATCTGCGTTT+GGG 0.404927 5.4:+59056775 MS.gene26258:CDS
AACAATGCAAGTGATCGATA+TGG 0.408713 5.4:+59055013 MS.gene26258:CDS
ATGAGTCTTGAAACAAATAA+AGG 0.410706 5.4:+59055478 MS.gene26258:CDS
AGTTTCCATTTCTTCATGAC+TGG 0.412100 5.4:-59058382 None:intergenic
TAACCCCTCCCAGCTTTGTC+TGG 0.414478 5.4:+59054815 MS.gene26258:CDS
TCATCCCAGTCATGAAGAAA+TGG 0.415741 5.4:+59058377 MS.gene26258:CDS
AGAAGAGGTCTCGCAATATT+GGG 0.416834 5.4:+59056887 MS.gene26258:CDS
CAATGGTCCATTGCAGCAAA+TGG 0.418979 5.4:+59056849 MS.gene26258:CDS
CTGCCGTTGGCCACTGAGAT+TGG 0.423759 5.4:+59055361 MS.gene26258:CDS
TCGTTCGAGTACCTTGATTT+CGG 0.425356 5.4:+59054768 MS.gene26258:CDS
AGGCAAGGCAAGTGCATGTC+GGG 0.425926 5.4:-59058122 None:intergenic
ACTCGTTCCCCATTATATCT+TGG 0.426035 5.4:-59056238 None:intergenic
CTTAACACCTTCTCAAATAA+GGG 0.428464 5.4:-59056002 None:intergenic
GAATTGACACTTAACTTCTT+CGG 0.430100 5.4:-59055179 None:intergenic
TGGAAACTGATACATATAAC+AGG 0.432852 5.4:+59058397 MS.gene26258:CDS
TCTGAATGTCCATTTAAGTA+AGG 0.433067 5.4:-59056760 None:intergenic
CTTATGCAGTTGTGTAGAAT+TGG 0.437808 5.4:+59055085 MS.gene26258:CDS
TATTGTAAGGAAGGTTCAAC+TGG 0.440184 5.4:+59053386 MS.gene26258:CDS
CAACAGTAGGATGTATGTAT+TGG 0.441536 5.4:+59056292 MS.gene26258:CDS
GGGTGGTCTTTGATCTCTGG+TGG 0.449691 5.4:+59053422 MS.gene26258:CDS
ACATTTAGTCGGATAGATCC+TGG 0.451349 5.4:+59056448 MS.gene26258:CDS
CCAGCTGACGACGACTCGTC+AGG 0.453820 5.4:-59058015 None:intergenic
CAAGAGCTGGAGAAATTGTC+GGG 0.454716 5.4:+59055589 MS.gene26258:CDS
AAAGGGTGGTCTTTGATCTC+TGG 0.456650 5.4:+59053419 MS.gene26258:CDS
ACAGAAAAGTGAATTCTCAT+AGG 0.458212 5.4:-59054553 None:intergenic
CTGCATTGGCAAGAGCATCT+AGG 0.465149 5.4:-59057966 None:intergenic
ATGAATAATTATTGTAAGGA+AGG 0.465785 5.4:+59053377 MS.gene26258:CDS
CTCTTTGAGCTTGCGACCAA+CGG 0.474847 5.4:-59055126 None:intergenic
CCTGACGAGTCGTCGTCAGC+TGG 0.478183 5.4:+59058015 MS.gene26258:CDS
AAGAAATTCTGTTCTGCCGT+TGG 0.479555 5.4:+59055348 MS.gene26258:CDS
CCAAACTCTGCAACAAATGC+GGG 0.482509 5.4:+59053450 MS.gene26258:CDS
CATTCAACCACCAAGTGGAC+AGG 0.483217 5.4:+59058089 MS.gene26258:CDS
TGGGTAATGGAACTGCTGAT+TGG 0.484375 5.4:+59056794 MS.gene26258:CDS
TTTATTTGTTTCAAGACTCA+TGG 0.486601 5.4:-59055476 None:intergenic
CTATGGAATTGAGACTTACA+TGG 0.489129 5.4:+59056947 MS.gene26258:CDS
ACAATATTTGGCTTGACACT+AGG 0.490295 5.4:-59057000 None:intergenic
TTTAACAGCATTTACTACAT+TGG 0.491046 5.4:+59055249 MS.gene26258:CDS
GCATCGTAAGGCTCTTGAAC+CGG 0.491358 5.4:-59058161 None:intergenic
GCCAAATATTGTAACAATTG+AGG 0.493508 5.4:+59057011 MS.gene26258:CDS
ACTGAAACCATTTGCTGCAA+TGG 0.494767 5.4:-59056856 None:intergenic
CCTTCACATCAGCAGGTGGC+CGG 0.497637 5.4:-59055522 None:intergenic
CATTCATAGCGAAGATGCTA+TGG 0.498765 5.4:+59056930 MS.gene26258:CDS
GTGTATGAATAATTATTGTA+AGG 0.498958 5.4:+59053373 MS.gene26258:CDS
ATTGCCTAAAACTGCTGCAT+TGG 0.500146 5.4:-59057980 None:intergenic
AACTTATACCACCGAAATCA+AGG 0.500512 5.4:-59054779 None:intergenic
CCGGCCACCTGCTGATGTGA+AGG 0.500794 5.4:+59055522 MS.gene26258:CDS
GTGTTAAGTCCGAGTGATGC+AGG 0.501935 5.4:+59056017 MS.gene26258:CDS
TCAGCAGGTGGCCGGCGTGG+TGG 0.502029 5.4:-59055514 None:intergenic
GTTTCCATTTCTTCATGACT+GGG 0.503416 5.4:-59058381 None:intergenic
GGTGGTCTTTGATCTCTGGT+GGG 0.503585 5.4:+59053423 MS.gene26258:CDS
TCAAGAGCTGGAGAAATTGT+CGG 0.505861 5.4:+59055588 MS.gene26258:CDS
CAGTAGGATGTATGTATTGG+AGG 0.506980 5.4:+59056295 MS.gene26258:CDS
TTACCCTGATGGAGAGGCAC+TGG 0.511162 5.4:-59057181 None:intergenic
ATTATATCTTGGAACTGTAA+AGG 0.513021 5.4:-59056227 None:intergenic
TCAACTGGTGAATGGAAGAA+AGG 0.514062 5.4:+59053401 MS.gene26258:CDS
CGGCCACCTGCTGATGTGAA+GGG 0.515875 5.4:+59055523 MS.gene26258:CDS
TTAACCTTACCAGACAAAGC+TGG 0.516700 5.4:-59054824 None:intergenic
CTTCAATCAATGAAAGGTAA+CGG 0.516842 5.4:+59056733 MS.gene26258:CDS
ATTGGAGAAGGTAAACTTGA+GGG 0.521191 5.4:+59055379 MS.gene26258:CDS
AGCTCTTGATCAGTAATCCT+TGG 0.521679 5.4:-59055574 None:intergenic
GGTATATAATCTTACCCTGA+TGG 0.522702 5.4:-59057192 None:intergenic
AAACATCCGAGGCATCGTCC+TGG 0.526966 5.4:+59058048 MS.gene26258:CDS
AGGAAGGTTCAACTGGTGAA+TGG 0.526974 5.4:+59053393 MS.gene26258:CDS
CGATATGGTGAACATATTGA+TGG 0.528805 5.4:+59055028 MS.gene26258:CDS
TACAAGTCACTCAACGGATG+AGG 0.528930 5.4:+59058287 MS.gene26258:CDS
TTGTTACAGTAACATTTAGT+CGG 0.530093 5.4:+59056437 MS.gene26258:intron
TGAAACGCTTTCACTAAAGA+TGG 0.532158 5.4:+59055309 MS.gene26258:CDS
CCAATTCGACCTGCATCACT+CGG 0.532323 5.4:-59056026 None:intergenic
AATCTTCTTCAATCAATGAA+AGG 0.533019 5.4:+59056727 MS.gene26258:CDS
TTTCAGTTTCAGAGAAGAAG+AGG 0.534891 5.4:+59056872 MS.gene26258:CDS
TTGGCTCAACTATCAAAGAC+TGG 0.539999 5.4:+59055448 MS.gene26258:CDS
ATCACCAGCATTTAATTGCA+AGG 0.546441 5.4:-59056339 None:intergenic
ATTAATCATATAGATGAAGC+AGG 0.546533 5.4:+59058237 MS.gene26258:CDS
CAGTCCTTGCAATTAAATGC+TGG 0.547662 5.4:+59056335 MS.gene26258:CDS
TAACCTTACCAGACAAAGCT+GGG 0.549034 5.4:-59054823 None:intergenic
GTGCATCCAGGACGATGCCT+CGG 0.549949 5.4:-59058054 None:intergenic
TACTTTCTCGATACTGGCCA+AGG 0.550936 5.4:+59055557 MS.gene26258:CDS
GTTGTTGAGCCTAGTGCTGC+GGG 0.553930 5.4:+59058336 MS.gene26258:CDS
CCGGCGCTTAAGAGTCTCAC+AGG 0.559293 5.4:-59058142 None:intergenic
CTTACCAGACAAAGCTGGGA+GGG 0.559652 5.4:-59054819 None:intergenic
CAACTGGTGAATGGAAGAAA+GGG 0.559758 5.4:+59053402 MS.gene26258:CDS
TGTAGTGCCCTTATTTGAGA+AGG 0.560033 5.4:+59055995 MS.gene26258:CDS
ATTGACTTCTGTTGTTACAC+AGG 0.561453 5.4:+59056501 MS.gene26258:CDS
TCCAATTGTCCCGCAGCACT+AGG 0.562994 5.4:-59058345 None:intergenic
TCCATCCAGTTTCATGACGG+TGG 0.564496 5.4:-59054584 None:intergenic
AATTGCAAGGACTGTATGCA+AGG 0.565036 5.4:-59056326 None:intergenic
ACTATACATCCACTGTGGAT+AGG 0.566036 5.4:-59054735 None:intergenic
GGAAAATAATAGACCAACAT+GGG 0.566824 5.4:+59055270 MS.gene26258:CDS
TTATTTCATTTAGGAACCCC+CGG 0.568626 5.4:+59057140 MS.gene26258:intron
AAGGATTACTGATCAAGAGC+TGG 0.569540 5.4:+59055576 MS.gene26258:CDS
GCCAAACTCTGCAACAAATG+CGG 0.571705 5.4:+59053449 MS.gene26258:CDS
TTACCAGACAAAGCTGGGAG+GGG 0.575319 5.4:-59054818 None:intergenic
ATCAGACCAGCTCGGTCCAA+AGG 0.576061 5.4:+59057517 MS.gene26258:CDS
TCCTCCATCCAGTTTCATGA+CGG 0.576172 5.4:-59054587 None:intergenic
CACACGATACAAGTGCATCC+AGG 0.576195 5.4:-59058066 None:intergenic
TTTGGCCTAATAACAACAGT+AGG 0.577022 5.4:+59056279 MS.gene26258:CDS
TTCCCCTTCACATCAGCAGG+TGG 0.578031 5.4:-59055526 None:intergenic
TTCGAGTACCTTGATTTCGG+TGG 0.580235 5.4:+59054771 MS.gene26258:CDS
TAAGTGTCAATTCAACAAAG+AGG 0.581056 5.4:+59055189 MS.gene26258:CDS
ACATCAGCAGGTGGCCGGCG+TGG 0.583280 5.4:-59055517 None:intergenic
CCTGTGAGACTCTTAAGCGC+CGG 0.585911 5.4:+59058142 MS.gene26258:CDS
CATTTAGTCGGATAGATCCT+GGG 0.586278 5.4:+59056449 MS.gene26258:CDS
GCTTAAAACTGCACATAGTG+AGG 0.592237 5.4:+59056816 MS.gene26258:CDS
CCTAATGAGTTCAAATTCTG+AGG 0.592495 5.4:-59056694 None:intergenic
CTTTCACTAAAGATGGCTCT+AGG 0.593793 5.4:+59055316 MS.gene26258:CDS
GGTTGTTGAGCCTAGTGCTG+CGG 0.595679 5.4:+59058335 MS.gene26258:CDS
ACAAGTCACTCAACGGATGA+GGG 0.597566 5.4:+59058288 MS.gene26258:CDS
ATAGATGAAGCAGGTACTAG+TGG 0.598221 5.4:+59058246 MS.gene26258:CDS
TATTGATGGTAGACTACTGG+TGG 0.600333 5.4:+59055042 MS.gene26258:CDS
GGCCACCTGCTGATGTGAAG+GGG 0.601780 5.4:+59055524 MS.gene26258:CDS
TGGTCGCAAGCTCAAAGAGA+TGG 0.603653 5.4:+59055130 MS.gene26258:CDS
CAGGCAAGGCAAGTGCATGT+CGG 0.603970 5.4:-59058123 None:intergenic
ACATATTGATGGTAGACTAC+TGG 0.604398 5.4:+59055039 MS.gene26258:CDS
TCCACCGTCATGAAACTGGA+TGG 0.604497 5.4:+59054583 MS.gene26258:CDS
ATTGCAAGGACTGTATGCAA+GGG 0.607548 5.4:-59056325 None:intergenic
ATATTGGGACGAAAACTAAG+AGG 0.609627 5.4:+59056902 MS.gene26258:CDS
AAGATATAATGGGGAACGAG+TGG 0.614024 5.4:+59056240 MS.gene26258:CDS
GCAAGCTCAAAGAGATGGCA+TGG 0.614907 5.4:+59055135 MS.gene26258:CDS
AGTAGGATGTATGTATTGGA+GGG 0.615364 5.4:+59056296 MS.gene26258:CDS
GCTTAAGAGTCTCACAGGCA+AGG 0.617723 5.4:-59058137 None:intergenic
CCTAAATGGAGGTCAGCTTG+AGG 0.620594 5.4:+59058314 MS.gene26258:CDS
TTGTGTAGAATTGGTGAAGT+CGG 0.620883 5.4:+59055094 MS.gene26258:CDS
TACAGTTCCAAGATATAATG+GGG 0.621280 5.4:+59056231 MS.gene26258:CDS
TTGGCCACTGAGATTGGAGA+AGG 0.621905 5.4:+59055367 MS.gene26258:CDS
AAACCAGTGCCTCTCCATCA+GGG 0.622368 5.4:+59057178 MS.gene26258:CDS
TCTACATCTTCTCATTCTAA+CGG 0.622522 5.4:+59056637 MS.gene26258:CDS
ACAAGATACAAGTCACTCAA+CGG 0.624174 5.4:+59058281 MS.gene26258:CDS
CAGCTGACGACGACTCGTCA+GGG 0.628337 5.4:-59058014 None:intergenic
TGATCTCTCATCCACCACGC+CGG 0.630532 5.4:+59055503 MS.gene26258:CDS
ATAATCTTACCCTGATGGAG+AGG 0.631070 5.4:-59057187 None:intergenic
GATGAAGCAGGTACTAGTGG+TGG 0.639251 5.4:+59058249 MS.gene26258:CDS
ATTCAACCACCAAGTGGACA+GGG 0.641900 5.4:+59058090 MS.gene26258:CDS
GGTTCTGCATCAGACCAGCT+CGG 0.642711 5.4:+59057509 MS.gene26258:CDS
TGGAAAATAATAGACCAACA+TGG 0.644227 5.4:+59055269 MS.gene26258:CDS
CTGGTGAATGGAAGAAAGGG+TGG 0.646177 5.4:+59053405 MS.gene26258:CDS
AAGTCGGTGAATCAAGCCGT+TGG 0.649140 5.4:+59055110 MS.gene26258:CDS
TTTGGCTTGACACTAGGCGG+CGG 0.654279 5.4:-59056994 None:intergenic
GTGTGCATTCAACCACCAAG+TGG 0.657426 5.4:+59058084 MS.gene26258:CDS
TCTCCAATCTCAGTGGCCAA+CGG 0.657815 5.4:-59055364 None:intergenic
CCTTCTGATTGCAAAATACG+AGG 0.659510 5.4:-59056200 None:intergenic
TTGCAAGGACTGTATGCAAG+GGG 0.665717 5.4:-59056324 None:intergenic
ATATTTGGCTTGACACTAGG+CGG 0.666538 5.4:-59056997 None:intergenic
GTTAGAATGAGAAGATGTAG+AGG 0.666828 5.4:-59056635 None:intergenic
TAAAACTGCACATAGTGAGG+AGG 0.667263 5.4:+59056819 MS.gene26258:CDS
GAAATGCAGCAATTGCAGCA+AGG 0.667427 5.4:+59054608 MS.gene26258:CDS
GATTGGAGAAGGTAAACTTG+AGG 0.667659 5.4:+59055378 MS.gene26258:CDS
AAGAGCTGGAGAAATTGTCG+GGG 0.668493 5.4:+59055590 MS.gene26258:CDS
TTAATCTTTCCGAAAACCGG+GGG 0.672825 5.4:-59057156 None:intergenic
ACCGTCATGAAACTGGATGG+AGG 0.674066 5.4:+59054586 MS.gene26258:CDS
TTTAATCTTTCCGAAAACCG+GGG 0.679300 5.4:-59057157 None:intergenic
AGTGAGGAGGAAATGAACAA+TGG 0.681817 5.4:+59056832 MS.gene26258:CDS
TATGGAATTGAGACTTACAT+GGG 0.685466 5.4:+59056948 MS.gene26258:CDS
AAGCTGGGAGGGGTTAACAC+AGG 0.694875 5.4:-59054808 None:intergenic
GAATCACCACAAAACATCCG+AGG 0.699635 5.4:+59058037 MS.gene26258:CDS
TTTACCTTCTCCAATCTCAG+TGG 0.700030 5.4:-59055371 None:intergenic
TCAATCAATGAAAGGTAACG+GGG 0.707345 5.4:+59056735 MS.gene26258:CDS
GATGAGGGAAGCCTAAATGG+AGG 0.710836 5.4:+59058303 MS.gene26258:CDS
CCTTACCAGACAAAGCTGGG+AGG 0.719494 5.4:-59054820 None:intergenic
AGAGCTGGAGAAATTGTCGG+GGG 0.721199 5.4:+59055591 MS.gene26258:CDS
GCTCCCAAAAGCGTGTGCTG+AGG 0.736724 5.4:+59056058 MS.gene26258:CDS
TTGATACTATACATCCACTG+TGG 0.738079 5.4:-59054740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATATTTCAATATCAA+AGG - chr5.4:59054693-59054712 None:intergenic 10.0%
!! CATGTATAAATAAAAAAAAA+CGG - chr5.4:59057587-59057606 None:intergenic 10.0%
!!! ACATATATCTAAATATTTTT+GGG + chr5.4:59057706-59057725 MS.gene26258:intron 10.0%
!!! GTTTTTTATTTATTTCATTT+AGG + chr5.4:59057131-59057150 MS.gene26258:intron 10.0%
!!! TACATATATCTAAATATTTT+TGG + chr5.4:59057705-59057724 MS.gene26258:intron 10.0%
!! AAATCCCAAAATTATTAATT+TGG - chr5.4:59053589-59053608 None:intergenic 15.0%
!! AGAATCAAATAACAAAATTT+CGG - chr5.4:59054884-59054903 None:intergenic 15.0%
!! ATTATTCTTATTATGTACTA+TGG + chr5.4:59057471-59057490 MS.gene26258:intron 15.0%
!! TCTTAAATATAAGTAAAAGT+TGG - chr5.4:59053931-59053950 None:intergenic 15.0%
!!! ACTTTTACTTATATTTAAGA+CGG + chr5.4:59053931-59053950 MS.gene26258:intron 15.0%
!!! ATTTCACAATGTTATAATTT+TGG + chr5.4:59053534-59053553 MS.gene26258:intron 15.0%
!!! CAATTTTTTTTTAGAAAACT+CGG - chr5.4:59054251-59054270 None:intergenic 15.0%
!!! TATGATTAATTTGATTGTTT+TGG - chr5.4:59058227-59058246 None:intergenic 15.0%
!!! TGATCCAAATTAATAATTTT+GGG + chr5.4:59053582-59053601 MS.gene26258:intron 15.0%
!!! TTGATCCAAATTAATAATTT+TGG + chr5.4:59053581-59053600 MS.gene26258:intron 15.0%
!!! TTTCACAATGTTATAATTTT+GGG + chr5.4:59053535-59053554 MS.gene26258:intron 15.0%
!! AAACTGAGATAATAATGTTA+AGG - chr5.4:59055966-59055985 None:intergenic 20.0%
!! AAATCAAAATATGAAATGCT+CGG + chr5.4:59053795-59053814 MS.gene26258:intron 20.0%
!! AACTGAGATAATAATGTTAA+GGG - chr5.4:59055965-59055984 None:intergenic 20.0%
!! AATAATAGACCAAAATACTA+AGG - chr5.4:59055911-59055930 None:intergenic 20.0%
!! AATACAACTTTAAATATGAG+TGG - chr5.4:59053766-59053785 None:intergenic 20.0%
!! ATAAATAAAAAACATAAGCC+AGG - chr5.4:59057124-59057143 None:intergenic 20.0%
!! ATAATAGACCAAAATACTAA+GGG - chr5.4:59055910-59055929 None:intergenic 20.0%
!! ATGAATAATTATTGTAAGGA+AGG + chr5.4:59053377-59053396 MS.gene26258:CDS 20.0%
!! GAATCAAATAACAAAATTTC+GGG - chr5.4:59054883-59054902 None:intergenic 20.0%
!! GTGTATGAATAATTATTGTA+AGG + chr5.4:59053373-59053392 MS.gene26258:CDS 20.0%
!! TAATTAAGTACTAGTTATCA+AGG - chr5.4:59057845-59057864 None:intergenic 20.0%
!! TTCAAATCAAACATATGTTT+AGG + chr5.4:59054418-59054437 MS.gene26258:intron 20.0%
!!! AATGATATAGTTTGGATTTT+TGG + chr5.4:59057074-59057093 MS.gene26258:intron 20.0%
!!! AATTTCTATTTGGTTTTAGA+AGG + chr5.4:59056476-59056495 MS.gene26258:CDS 20.0%
!!! ATTAATAATTTTGGGATTTG+AGG + chr5.4:59053590-59053609 MS.gene26258:intron 20.0%
!!! CGAGTTTTCTAAAAAAAAAT+TGG + chr5.4:59054249-59054268 MS.gene26258:intron 20.0%
!!! CTTTTACTTATATTTAAGAC+GGG + chr5.4:59053932-59053951 MS.gene26258:intron 20.0%
!!! TATCATTGAATGTTTTTCTA+TGG + chr5.4:59054945-59054964 MS.gene26258:intron 20.0%
!!! TTCACAATGTTATAATTTTG+GGG + chr5.4:59053536-59053555 MS.gene26258:intron 20.0%
! AAACTGTGAATGATATAGTT+TGG + chr5.4:59057066-59057085 MS.gene26258:intron 25.0%
! AAATAAAAAAAAACGGTAGC+AGG - chr5.4:59057580-59057599 None:intergenic 25.0%
! AATCTTCTTCAATCAATGAA+AGG + chr5.4:59056727-59056746 MS.gene26258:CDS 25.0%
! AATGTAGTAAATGCTGTTAA+AGG - chr5.4:59055250-59055269 None:intergenic 25.0%
! ACATTAAGATAATCATTTGC+AGG - chr5.4:59054033-59054052 None:intergenic 25.0%
! AGGATACTGAAAATCATAAT+AGG + chr5.4:59054972-59054991 MS.gene26258:intron 25.0%
! ATGAGTCTTGAAACAAATAA+AGG + chr5.4:59055478-59055497 MS.gene26258:CDS 25.0%
! ATTAATCATATAGATGAAGC+AGG + chr5.4:59058237-59058256 MS.gene26258:CDS 25.0%
! ATTATATCTTGGAACTGTAA+AGG - chr5.4:59056230-59056249 None:intergenic 25.0%
! CAAACAGAACCTAAATATAA+AGG - chr5.4:59055622-59055641 None:intergenic 25.0%
! CAATCATTGTACATATTTGA+AGG - chr5.4:59057268-59057287 None:intergenic 25.0%
! CATCATATTCTTCAAATACT+TGG - chr5.4:59057038-59057057 None:intergenic 25.0%
! GAATCTGTAAATTTATGTGT+CGG - chr5.4:59054921-59054940 None:intergenic 25.0%
! TAGTCCTATTTCAAATGTTT+GGG + chr5.4:59057384-59057403 MS.gene26258:intron 25.0%
! TCCTCAATTGTTACAATATT+TGG - chr5.4:59057015-59057034 None:intergenic 25.0%
! TTAAAGGGTTATCTTTAAAC+AGG + chr5.4:59056609-59056628 MS.gene26258:intron 25.0%
! TTACAGTTCCAAGATATAAT+GGG + chr5.4:59056230-59056249 MS.gene26258:CDS 25.0%
! TTAGTCCTATTTCAAATGTT+TGG + chr5.4:59057383-59057402 MS.gene26258:intron 25.0%
! TTGTTACAGTAACATTTAGT+CGG + chr5.4:59056437-59056456 MS.gene26258:intron 25.0%
! TTTAACAGCATTTACTACAT+TGG + chr5.4:59055249-59055268 MS.gene26258:CDS 25.0%
! TTTACAGTTCCAAGATATAA+TGG + chr5.4:59056229-59056248 MS.gene26258:CDS 25.0%
! TTTATTTGTTTCAAGACTCA+TGG - chr5.4:59055479-59055498 None:intergenic 25.0%
!! ATTATGTACTATGGTTTTTC+AGG + chr5.4:59057480-59057499 MS.gene26258:intron 25.0%
!! CTTTATATTTAGGTTCTGTT+TGG + chr5.4:59055620-59055639 MS.gene26258:intron 25.0%
!!! CTTTTGCTTATATTTAAGAC+CGG - chr5.4:59053861-59053880 None:intergenic 25.0%
!!! TCAAAGAAAGTTGATGTATT+TGG - chr5.4:59053908-59053927 None:intergenic 25.0%
AAAACCCCAGAAAAGAAAAA+GGG - chr5.4:59053673-59053692 None:intergenic 30.0%
AAATGTAGACTGAACAGAAA+GGG - chr5.4:59053984-59054003 None:intergenic 30.0%
AAATTAAGAATCCGTAAGCA+GGG - chr5.4:59054509-59054528 None:intergenic 30.0%
AAGTCCATGTTGCAATTTAT+AGG + chr5.4:59054373-59054392 MS.gene26258:intron 30.0%
AATAAGCTGAAAACAACTCA+TGG + chr5.4:59055793-59055812 MS.gene26258:intron 30.0%
ACAGAAAAGTGAATTCTCAT+AGG - chr5.4:59054556-59054575 None:intergenic 30.0%
ACTTAACACCTTCTCAAATA+AGG - chr5.4:59056006-59056025 None:intergenic 30.0%
AGTCCATGTTGCAATTTATA+GGG + chr5.4:59054374-59054393 MS.gene26258:intron 30.0%
AGTCTTCAAAGAACCAAAAA+AGG + chr5.4:59057548-59057567 MS.gene26258:CDS 30.0%
AGTTTATCGAAACAGCTTAA+CGG - chr5.4:59055824-59055843 None:intergenic 30.0%
CAAATTGGTATACGAATTTC+AGG + chr5.4:59056169-59056188 MS.gene26258:intron 30.0%
CCTGGGAAAAAATTTCTATT+TGG + chr5.4:59056466-59056485 MS.gene26258:CDS 30.0%
CTTAACACCTTCTCAAATAA+GGG - chr5.4:59056005-59056024 None:intergenic 30.0%
CTTATTTCGATAAGTTCTCT+AGG - chr5.4:59055779-59055798 None:intergenic 30.0%
CTTCAATCAATGAAAGGTAA+CGG + chr5.4:59056733-59056752 MS.gene26258:CDS 30.0%
GAATTGACACTTAACTTCTT+CGG - chr5.4:59055182-59055201 None:intergenic 30.0%
GCCAAATATTGTAACAATTG+AGG + chr5.4:59057011-59057030 MS.gene26258:CDS 30.0%
GGAAAATAATAGACCAACAT+GGG + chr5.4:59055270-59055289 MS.gene26258:CDS 30.0%
TAAAACATTTCACACATGCA+CGG - chr5.4:59057687-59057706 None:intergenic 30.0%
TAAATTAAGAATCCGTAAGC+AGG - chr5.4:59054510-59054529 None:intergenic 30.0%
TAAGTGTCAATTCAACAAAG+AGG + chr5.4:59055189-59055208 MS.gene26258:CDS 30.0%
TACAGTTCCAAGATATAATG+GGG + chr5.4:59056231-59056250 MS.gene26258:CDS 30.0%
TATGGAATTGAGACTTACAT+GGG + chr5.4:59056948-59056967 MS.gene26258:CDS 30.0%
TCTACATCTTCTCATTCTAA+CGG + chr5.4:59056637-59056656 MS.gene26258:CDS 30.0%
TCTGAATGTCCATTTAAGTA+AGG - chr5.4:59056763-59056782 None:intergenic 30.0%
TCTGTAGTAGTCATGTTTAT+CGG + chr5.4:59057608-59057627 MS.gene26258:intron 30.0%
TGGAAAATAATAGACCAACA+TGG + chr5.4:59055269-59055288 MS.gene26258:CDS 30.0%
TGGAAACTGATACATATAAC+AGG + chr5.4:59058397-59058416 MS.gene26258:CDS 30.0%
TGTTCTTATGAGTTCATGTT+GGG + chr5.4:59053623-59053642 MS.gene26258:intron 30.0%
TTACCCTATAAATTGCAACA+TGG - chr5.4:59054380-59054399 None:intergenic 30.0%
TTCAATCAATGAAAGGTAAC+GGG + chr5.4:59056734-59056753 MS.gene26258:CDS 30.0%
! ATAAAGGATCCAAACTTTTC+TGG + chr5.4:59056667-59056686 MS.gene26258:CDS 30.0%
! CATCTTCTCATTTTCAACAA+GGG + chr5.4:59055407-59055426 MS.gene26258:CDS 30.0%
! GAATGTTTTTCTATGGATAC+AGG + chr5.4:59054952-59054971 MS.gene26258:intron 30.0%
! TACATCCTACTGTTGTTATT+AGG - chr5.4:59056287-59056306 None:intergenic 30.0%
! TGATCATCATTTTCATCCAA+AGG - chr5.4:59053741-59053760 None:intergenic 30.0%
! TTCAACCCTTTTTCTTTTCT+GGG + chr5.4:59053665-59053684 MS.gene26258:intron 30.0%
! TTTCAACCCTTTTTCTTTTC+TGG + chr5.4:59053664-59053683 MS.gene26258:intron 30.0%
! TTTTAATCTTTCCGAAAACC+GGG - chr5.4:59057161-59057180 None:intergenic 30.0%
!! AGTGCTTTGGAAATAACTTT+AGG - chr5.4:59057814-59057833 None:intergenic 30.0%
!! GTTTTAATCTTTCCGAAAAC+CGG - chr5.4:59057162-59057181 None:intergenic 30.0%
!!! CCAAATAGAAATTTTTTCCC+AGG - chr5.4:59056469-59056488 None:intergenic 30.0%
!!! CTAAATATTTTTGGGATGTG+TGG + chr5.4:59057714-59057733 MS.gene26258:intron 30.0%
AACAATGCAAGTGATCGATA+TGG + chr5.4:59055013-59055032 MS.gene26258:CDS 35.0%
AACTTATACCACCGAAATCA+AGG - chr5.4:59054782-59054801 None:intergenic 35.0%
AATTAAGAATCCGTAAGCAG+GGG - chr5.4:59054508-59054527 None:intergenic 35.0%
ACAAGATACAAGTCACTCAA+CGG + chr5.4:59058281-59058300 MS.gene26258:CDS 35.0%
AGCAAGCACAGAATTTAACA+AGG - chr5.4:59057763-59057782 None:intergenic 35.0%
AGTAGGATGTATGTATTGGA+GGG + chr5.4:59056296-59056315 MS.gene26258:CDS 35.0%
AGTCTTGCTCTGACTTTAAA+TGG + chr5.4:59054165-59054184 MS.gene26258:intron 35.0%
AGTTTCCATTTCTTCATGAC+TGG - chr5.4:59058385-59058404 None:intergenic 35.0%
ATATTGGGACGAAAACTAAG+AGG + chr5.4:59056902-59056921 MS.gene26258:CDS 35.0%
ATCACCAGCATTTAATTGCA+AGG - chr5.4:59056342-59056361 None:intergenic 35.0%
ATCTTCAGATTTCTGTTACC+TGG + chr5.4:59057103-59057122 MS.gene26258:intron 35.0%
ATTCAAGAACACAAGCTTTC+AGG + chr5.4:59057943-59057962 MS.gene26258:CDS 35.0%
ATTGGAGAAGGTAAACTTGA+GGG + chr5.4:59055379-59055398 MS.gene26258:CDS 35.0%
CAAATGTAGACTGAACAGAA+AGG - chr5.4:59053985-59054004 None:intergenic 35.0%
CAACAGTAGGATGTATGTAT+TGG + chr5.4:59056292-59056311 MS.gene26258:CDS 35.0%
CAACTGCTTCAGATTCTAAT+TGG - chr5.4:59058200-59058219 None:intergenic 35.0%
CAATTAAATGCTGGTGATAC+TGG + chr5.4:59056344-59056363 MS.gene26258:CDS 35.0%
CAATTCTACACAACTGCATA+AGG - chr5.4:59055087-59055106 None:intergenic 35.0%
CCTAATGAGTTCAAATTCTG+AGG - chr5.4:59056697-59056716 None:intergenic 35.0%
CCTCAGAATTTGAACTCATT+AGG + chr5.4:59056694-59056713 MS.gene26258:CDS 35.0%
CGATATGGTGAACATATTGA+TGG + chr5.4:59055028-59055047 MS.gene26258:CDS 35.0%
CTATGGAATTGAGACTTACA+TGG + chr5.4:59056947-59056966 MS.gene26258:CDS 35.0%
CTTATGCAGTTGTGTAGAAT+TGG + chr5.4:59055085-59055104 MS.gene26258:CDS 35.0%
GAAAACCCCAGAAAAGAAAA+AGG - chr5.4:59053674-59053693 None:intergenic 35.0%
GCAAACATCTCAGTCTATAT+TGG + chr5.4:59055429-59055448 MS.gene26258:CDS 35.0%
GGGTACATTACTTAAACTGA+TGG - chr5.4:59053964-59053983 None:intergenic 35.0%
GGTATATAATCTTACCCTGA+TGG - chr5.4:59057195-59057214 None:intergenic 35.0%
GTCTTGCTCTGACTTTAAAT+GGG + chr5.4:59054166-59054185 MS.gene26258:intron 35.0%
GTGTTCTTATGAGTTCATGT+TGG + chr5.4:59053622-59053641 MS.gene26258:intron 35.0%
GTTAGAATGAGAAGATGTAG+AGG - chr5.4:59056638-59056657 None:intergenic 35.0%
GTTTCCATTTCTTCATGACT+GGG - chr5.4:59058384-59058403 None:intergenic 35.0%
TACACATTTCCCTGTAATTG+CGG + chr5.4:59056137-59056156 MS.gene26258:intron 35.0%
TATCAAAGGAGAGAAAGACA+AGG - chr5.4:59054679-59054698 None:intergenic 35.0%
TATCTTAATGTGTACCCACT+TGG + chr5.4:59054042-59054061 MS.gene26258:intron 35.0%
TATTGTAAGGAAGGTTCAAC+TGG + chr5.4:59053386-59053405 MS.gene26258:CDS 35.0%
TCAATCAATGAAAGGTAACG+GGG + chr5.4:59056735-59056754 MS.gene26258:CDS 35.0%
TGAAACGCTTTCACTAAAGA+TGG + chr5.4:59055309-59055328 MS.gene26258:CDS 35.0%
TGAAGACTTTCTTGTTCCTT+TGG - chr5.4:59057536-59057555 None:intergenic 35.0%
TTATTTCATTTAGGAACCCC+CGG + chr5.4:59057140-59057159 MS.gene26258:intron 35.0%
TTCTAACGGCATTTCGATAA+AGG + chr5.4:59056651-59056670 MS.gene26258:CDS 35.0%
TTGATACTATACATCCACTG+TGG - chr5.4:59054743-59054762 None:intergenic 35.0%
TTGTGTAGAATTGGTGAAGT+CGG + chr5.4:59055094-59055113 MS.gene26258:CDS 35.0%
TTTAATCTTTCCGAAAACCG+GGG - chr5.4:59057160-59057179 None:intergenic 35.0%
TTTCAGTTTCAGAGAAGAAG+AGG + chr5.4:59056872-59056891 MS.gene26258:CDS 35.0%
TTTGGCCTAATAACAACAGT+AGG + chr5.4:59056279-59056298 MS.gene26258:CDS 35.0%
! ACATATTGATGGTAGACTAC+TGG + chr5.4:59055039-59055058 MS.gene26258:CDS 35.0%
! ATACTTTTAGTCTCCCATGT+TGG - chr5.4:59055286-59055305 None:intergenic 35.0%
! ATCAGTTACTTTCTCGATAC+TGG + chr5.4:59055551-59055570 MS.gene26258:CDS 35.0%
! ATTGACTTCTGTTGTTACAC+AGG + chr5.4:59056501-59056520 MS.gene26258:CDS 35.0%
! CAAAATACTAAGGGCTTGTT+AGG - chr5.4:59055901-59055920 None:intergenic 35.0%
! CTAACAAGCCCTTAGTATTT+TGG + chr5.4:59055899-59055918 MS.gene26258:intron 35.0%
! GCATCCCAAACATTTGAAAT+AGG - chr5.4:59057391-59057410 None:intergenic 35.0%
! GCATCTTCTCATTTTCAACA+AGG + chr5.4:59055406-59055425 MS.gene26258:CDS 35.0%
! GGACTTTTCAGTTCAGATTT+TGG + chr5.4:59056261-59056280 MS.gene26258:CDS 35.0%
! TCAACCCTTTTTCTTTTCTG+GGG + chr5.4:59053666-59053685 MS.gene26258:intron 35.0%
! TCGATCACTTGCATTGTTTT+TGG - chr5.4:59055011-59055030 None:intergenic 35.0%
! TTTATGTGTCGGTATCACAA+TGG - chr5.4:59054910-59054929 None:intergenic 35.0%
! TTTTCTTCTTACGCATCGTA+AGG - chr5.4:59058176-59058195 None:intergenic 35.0%
!! ACAATATTTGGCTTGACACT+AGG - chr5.4:59057003-59057022 None:intergenic 35.0%
!! GGGGAGTATCCTTTATATTT+AGG + chr5.4:59055610-59055629 MS.gene26258:intron 35.0%
!!! CATTGTTTTTGGTCGATTGA+GGG - chr5.4:59055000-59055019 None:intergenic 35.0%
!!! CTTGGTTTTGTTAGTAAGTC+AGG + chr5.4:59054338-59054357 MS.gene26258:intron 35.0%
!!! TATTTTTGGGATGTGTGGAT+TGG + chr5.4:59057719-59057738 MS.gene26258:intron 35.0%
!!! TCGCTTCTTTTTAGAATCTG+CGG - chr5.4:59057899-59057918 None:intergenic 35.0%
!!! TTTCTTTTCTGGGGTTTTCA+GGG + chr5.4:59053675-59053694 MS.gene26258:intron 35.0%
!!! TTTTCTTTTCTGGGGTTTTC+AGG + chr5.4:59053674-59053693 MS.gene26258:intron 35.0%
AAATTCCACCGTCATGAAAC+TGG + chr5.4:59054579-59054598 MS.gene26258:CDS 40.0%
AACGGGGAACCTTACTTAAA+TGG + chr5.4:59056751-59056770 MS.gene26258:CDS 40.0%
AAGAAATTCTGTTCTGCCGT+TGG + chr5.4:59055348-59055367 MS.gene26258:CDS 40.0%
AAGAAGAGGTCTCGCAATAT+TGG + chr5.4:59056886-59056905 MS.gene26258:CDS 40.0%
AAGGATTACTGATCAAGAGC+TGG + chr5.4:59055576-59055595 MS.gene26258:CDS 40.0%
AATTGCAAGGACTGTATGCA+AGG - chr5.4:59056329-59056348 None:intergenic 40.0%
ACATTCAGAACATCTGCGTT+TGG + chr5.4:59056774-59056793 MS.gene26258:CDS 40.0%
ACATTTAGTCGGATAGATCC+TGG + chr5.4:59056448-59056467 MS.gene26258:CDS 40.0%
ACGCATAAATGCACAGTTAC+AGG - chr5.4:59053705-59053724 None:intergenic 40.0%
ACTATACATCCACTGTGGAT+AGG - chr5.4:59054738-59054757 None:intergenic 40.0%
ACTCGTTCCCCATTATATCT+TGG - chr5.4:59056241-59056260 None:intergenic 40.0%
AGAAACCTCAGAACAAAAGC+AGG - chr5.4:59054320-59054339 None:intergenic 40.0%
AGAAGAGGTCTCGCAATATT+GGG + chr5.4:59056887-59056906 MS.gene26258:CDS 40.0%
AGCTCTTGATCAGTAATCCT+TGG - chr5.4:59055577-59055596 None:intergenic 40.0%
AGTCAGAGCAAGACTTTGTA+TGG - chr5.4:59054160-59054179 None:intergenic 40.0%
AGTGAGGAGGAAATGAACAA+TGG + chr5.4:59056832-59056851 MS.gene26258:CDS 40.0%
ATAATCTTACCCTGATGGAG+AGG - chr5.4:59057190-59057209 None:intergenic 40.0%
ATAGATGAAGCAGGTACTAG+TGG + chr5.4:59058246-59058265 MS.gene26258:CDS 40.0%
ATTGCAAGGACTGTATGCAA+GGG - chr5.4:59056328-59056347 None:intergenic 40.0%
ATTGCCTAAAACTGCTGCAT+TGG - chr5.4:59057983-59058002 None:intergenic 40.0%
CAACTGGTGAATGGAAGAAA+GGG + chr5.4:59053402-59053421 MS.gene26258:CDS 40.0%
CACTTAACTTCTTCGGTCTT+TGG - chr5.4:59055175-59055194 None:intergenic 40.0%
CAGTAGGATGTATGTATTGG+AGG + chr5.4:59056295-59056314 MS.gene26258:CDS 40.0%
CAGTCCTTGCAATTAAATGC+TGG + chr5.4:59056335-59056354 MS.gene26258:CDS 40.0%
CATTCAGAACATCTGCGTTT+GGG + chr5.4:59056775-59056794 MS.gene26258:CDS 40.0%
CATTCATAGCGAAGATGCTA+TGG + chr5.4:59056930-59056949 MS.gene26258:CDS 40.0%
CATTTAGTCGGATAGATCCT+GGG + chr5.4:59056449-59056468 MS.gene26258:CDS 40.0%
CCTTCTGATTGCAAAATACG+AGG - chr5.4:59056203-59056222 None:intergenic 40.0%
CTTACTTTGTGCTCCTCTAA+AGG + chr5.4:59054091-59054110 MS.gene26258:intron 40.0%
CTTTCACTAAAGATGGCTCT+AGG + chr5.4:59055316-59055335 MS.gene26258:CDS 40.0%
GATGGCATGGTTTCATGTAT+TGG + chr5.4:59055148-59055167 MS.gene26258:CDS 40.0%
GATTGGAGAAGGTAAACTTG+AGG + chr5.4:59055378-59055397 MS.gene26258:CDS 40.0%
GCAGACAGGTCAACATTATT+CGG + chr5.4:59057409-59057428 MS.gene26258:intron 40.0%
GCTTAAAACTGCACATAGTG+AGG + chr5.4:59056816-59056835 MS.gene26258:CDS 40.0%
GTTTATCGGAACAGAGTTAG+AGG + chr5.4:59057622-59057641 MS.gene26258:intron 40.0%
TAAAACTGCACATAGTGAGG+AGG + chr5.4:59056819-59056838 MS.gene26258:CDS 40.0%
TAACCTTACCAGACAAAGCT+GGG - chr5.4:59054826-59054845 None:intergenic 40.0%
TCAACTGGTGAATGGAAGAA+AGG + chr5.4:59053401-59053420 MS.gene26258:CDS 40.0%
TCAAGAGCTGGAGAAATTGT+CGG + chr5.4:59055588-59055607 MS.gene26258:CDS 40.0%
TCATACATGCCGCAATTACA+GGG - chr5.4:59056149-59056168 None:intergenic 40.0%
TCATCCCAGTCATGAAGAAA+TGG + chr5.4:59058377-59058396 MS.gene26258:CDS 40.0%
TCGTTCGAGTACCTTGATTT+CGG + chr5.4:59054768-59054787 MS.gene26258:CDS 40.0%
TGTCAACGAATCTCAGTTCT+TGG - chr5.4:59053828-59053847 None:intergenic 40.0%
TTAACCTTACCAGACAAAGC+TGG - chr5.4:59054827-59054846 None:intergenic 40.0%
TTAATCTTTCCGAAAACCGG+GGG - chr5.4:59057159-59057178 None:intergenic 40.0%
TTAATGTGTACCCACTTGGT+TGG + chr5.4:59054046-59054065 MS.gene26258:intron 40.0%
TTGCGGCATGTATGACAAAT+TGG + chr5.4:59056154-59056173 MS.gene26258:intron 40.0%
TTGGCTCAACTATCAAAGAC+TGG + chr5.4:59055448-59055467 MS.gene26258:CDS 40.0%
TTTACCTTCTCCAATCTCAG+TGG - chr5.4:59055374-59055393 None:intergenic 40.0%
! AAGATATAATGGGGAACGAG+TGG + chr5.4:59056240-59056259 MS.gene26258:CDS 40.0%
! ACTGAAACCATTTGCTGCAA+TGG - chr5.4:59056859-59056878 None:intergenic 40.0%
! ATTCCCTCTGATGCCAATTT+TGG + chr5.4:59054125-59054144 MS.gene26258:intron 40.0%
! CCTCGTATTTTGCAATCAGA+AGG + chr5.4:59056200-59056219 MS.gene26258:CDS 40.0%
! CTGATAGTGCTAAATGTGCA+AGG - chr5.4:59057216-59057235 None:intergenic 40.0%
! TATTGATGGTAGACTACTGG+TGG + chr5.4:59055042-59055061 MS.gene26258:CDS 40.0%
! TGTAGTGCCCTTATTTGAGA+AGG + chr5.4:59055995-59056014 MS.gene26258:CDS 40.0%
!! ATATTTGGCTTGACACTAGG+CGG - chr5.4:59057000-59057019 None:intergenic 40.0%
!! CTTTACCTGCTTTTGTTCTG+AGG + chr5.4:59054312-59054331 MS.gene26258:intron 40.0%
!!! CTATGGTTTTTCAGGTCTTC+AGG + chr5.4:59057488-59057507 MS.gene26258:intron 40.0%
!!! GCATTGTTTTTGGTCGATTG+AGG - chr5.4:59055001-59055020 None:intergenic 40.0%
!!! GCTTTTGTTCTGAGGTTTCT+TGG + chr5.4:59054320-59054339 MS.gene26258:intron 40.0%
!!! TAGCAGGATCGTACCTTTTT+TGG - chr5.4:59057564-59057583 None:intergenic 40.0%
AAAGGGTGGTCTTTGATCTC+TGG + chr5.4:59053419-59053438 MS.gene26258:CDS 45.0%
AAGAGCTGGAGAAATTGTCG+GGG + chr5.4:59055590-59055609 MS.gene26258:CDS 45.0%
ACAAGTCACTCAACGGATGA+GGG + chr5.4:59058288-59058307 MS.gene26258:CDS 45.0%
AGGAAGGTTCAACTGGTGAA+TGG + chr5.4:59053393-59053412 MS.gene26258:CDS 45.0%
ATCAATCCCGAGACCTTTAG+AGG - chr5.4:59054107-59054126 None:intergenic 45.0%
ATTCAACCACCAAGTGGACA+GGG + chr5.4:59058090-59058109 MS.gene26258:CDS 45.0%
CAAGAGCTGGAGAAATTGTC+GGG + chr5.4:59055589-59055608 MS.gene26258:CDS 45.0%
CAAGGACTACTTCAGTGCTT+TGG - chr5.4:59057827-59057846 None:intergenic 45.0%
CAATGACCGACTAATCCTAG+GGG - chr5.4:59054220-59054239 None:intergenic 45.0%
CAATGGTCCATTGCAGCAAA+TGG + chr5.4:59056849-59056868 MS.gene26258:CDS 45.0%
CCAAACTCTGCAACAAATGC+GGG + chr5.4:59053450-59053469 MS.gene26258:CDS 45.0%
CCAATGACCGACTAATCCTA+GGG - chr5.4:59054221-59054240 None:intergenic 45.0%
CCACCAAAATTGGCATCAGA+GGG - chr5.4:59054131-59054150 None:intergenic 45.0%
CGTGTTTGAATCTCAGCCTT+TGG + chr5.4:59053722-59053741 MS.gene26258:intron 45.0%
CTGGTGGAACAAGCTGTTAA+AGG + chr5.4:59055058-59055077 MS.gene26258:CDS 45.0%
GAAATGCAGCAATTGCAGCA+AGG + chr5.4:59054608-59054627 MS.gene26258:CDS 45.0%
GAACATCTGCGTTTGGGTAA+TGG + chr5.4:59056781-59056800 MS.gene26258:CDS 45.0%
GAATCACCACAAAACATCCG+AGG + chr5.4:59058037-59058056 MS.gene26258:CDS 45.0%
GCCAAACTCTGCAACAAATG+CGG + chr5.4:59053449-59053468 MS.gene26258:CDS 45.0%
GTCATACATGCCGCAATTAC+AGG - chr5.4:59056150-59056169 None:intergenic 45.0%
TACAAGTCACTCAACGGATG+AGG + chr5.4:59058287-59058306 MS.gene26258:CDS 45.0%
TACTTTCTCGATACTGGCCA+AGG + chr5.4:59055557-59055576 MS.gene26258:CDS 45.0%
TCCTCCATCCAGTTTCATGA+CGG - chr5.4:59054590-59054609 None:intergenic 45.0%
TGAGGTGCACCAGAAAAGTT+TGG - chr5.4:59056679-59056698 None:intergenic 45.0%
TTCGAGTACCTTGATTTCGG+TGG + chr5.4:59054771-59054790 MS.gene26258:CDS 45.0%
TTGCAAGGACTGTATGCAAG+GGG - chr5.4:59056327-59056346 None:intergenic 45.0%
! ATACCTCAGCACACGCTTTT+GGG - chr5.4:59056064-59056083 None:intergenic 45.0%
! ATGTGTCGGTATCACAATGG+CGG - chr5.4:59054907-59054926 None:intergenic 45.0%
! ATTGGACCCCTAGGATTAGT+CGG + chr5.4:59054211-59054230 MS.gene26258:intron 45.0%
! ATTTAGGAACCCCCGGTTTT+CGG + chr5.4:59057147-59057166 MS.gene26258:intron 45.0%
! CAAATGTTTGGGATGCAGAC+AGG + chr5.4:59057395-59057414 MS.gene26258:intron 45.0%
! CATTGACTATCCCCTGCTTA+CGG + chr5.4:59054495-59054514 MS.gene26258:intron 45.0%
! CTTGCCAATGCAGCAGTTTT+AGG + chr5.4:59057976-59057995 MS.gene26258:CDS 45.0%
! TATACCTCAGCACACGCTTT+TGG - chr5.4:59056065-59056084 None:intergenic 45.0%
! TCATGTTTTCCCTGTCCACT+TGG - chr5.4:59058102-59058121 None:intergenic 45.0%
! TTGTGCTCCTCTAAAGGTCT+CGG + chr5.4:59054097-59054116 MS.gene26258:intron 45.0%
! TTTTTCCCCTTCACATCAGC+AGG - chr5.4:59055532-59055551 None:intergenic 45.0%
! TTTTTGCAGCCTATCCACAG+TGG + chr5.4:59054726-59054745 MS.gene26258:intron 45.0%
!! ATGGACTAGCCCACCAAAAT+TGG - chr5.4:59054141-59054160 None:intergenic 45.0%
!! CCTAGGATTAGTCGGTCATT+GGG + chr5.4:59054219-59054238 MS.gene26258:intron 45.0%
!! CCTCTGATGCCAATTTTGGT+GGG + chr5.4:59054129-59054148 MS.gene26258:intron 45.0%
!! TGGGTAATGGAACTGCTGAT+TGG + chr5.4:59056794-59056813 MS.gene26258:CDS 45.0%
!! AAATATCTTATAATATATAT+TGG + chr5.4:59057301-59057320 MS.gene26258:intron 5.0%
!!! ATTTTTGAAAATATAATTAA+AGG + chr5.4:59056593-59056612 MS.gene26258:intron 5.0%
!!! TAATTAATTCTTATATTTTA+TGG + chr5.4:59057859-59057878 MS.gene26258:intron 5.0%
!!! TTTTTGAAAATATAATTAAA+GGG + chr5.4:59056594-59056613 MS.gene26258:intron 5.0%
AAAACCAGTGCCTCTCCATC+AGG + chr5.4:59057177-59057196 MS.gene26258:CDS 50.0%
AAACCAGTGCCTCTCCATCA+GGG + chr5.4:59057178-59057197 MS.gene26258:CDS 50.0%
AAGTCGGTGAATCAAGCCGT+TGG + chr5.4:59055110-59055129 MS.gene26258:CDS 50.0%
ACCGTCATGAAACTGGATGG+AGG + chr5.4:59054586-59054605 MS.gene26258:CDS 50.0%
ACGGATGAGGGAAGCCTAAA+TGG + chr5.4:59058300-59058319 MS.gene26258:CDS 50.0%
AGAGCTGGAGAAATTGTCGG+GGG + chr5.4:59055591-59055610 MS.gene26258:CDS 50.0%
CACACGATACAAGTGCATCC+AGG - chr5.4:59058069-59058088 None:intergenic 50.0%
CATTCAACCACCAAGTGGAC+AGG + chr5.4:59058089-59058108 MS.gene26258:CDS 50.0%
CCAATTCGACCTGCATCACT+CGG - chr5.4:59056029-59056048 None:intergenic 50.0%
CCCAATGACCGACTAATCCT+AGG - chr5.4:59054222-59054241 None:intergenic 50.0%
CCCACCAAAATTGGCATCAG+AGG - chr5.4:59054132-59054151 None:intergenic 50.0%
CCTAAATGGAGGTCAGCTTG+AGG + chr5.4:59058314-59058333 MS.gene26258:CDS 50.0%
CCTCAAGCTGACCTCCATTT+AGG - chr5.4:59058317-59058336 None:intergenic 50.0%
CTCTTTGAGCTTGCGACCAA+CGG - chr5.4:59055129-59055148 None:intergenic 50.0%
CTGGTGAATGGAAGAAAGGG+TGG + chr5.4:59053405-59053424 MS.gene26258:CDS 50.0%
CTTACCAGACAAAGCTGGGA+GGG - chr5.4:59054822-59054841 None:intergenic 50.0%
GATGAAGCAGGTACTAGTGG+TGG + chr5.4:59058249-59058268 MS.gene26258:CDS 50.0%
GATGAGGGAAGCCTAAATGG+AGG + chr5.4:59058303-59058322 MS.gene26258:CDS 50.0%
GCAAGCTCAAAGAGATGGCA+TGG + chr5.4:59055135-59055154 MS.gene26258:CDS 50.0%
GCATCGTAAGGCTCTTGAAC+CGG - chr5.4:59058164-59058183 None:intergenic 50.0%
GCTTAAGAGTCTCACAGGCA+AGG - chr5.4:59058140-59058159 None:intergenic 50.0%
GGTGGTCTTTGATCTCTGGT+GGG + chr5.4:59053423-59053442 MS.gene26258:CDS 50.0%
GTGTGCATTCAACCACCAAG+TGG + chr5.4:59058084-59058103 MS.gene26258:CDS 50.0%
GTGTTAAGTCCGAGTGATGC+AGG + chr5.4:59056017-59056036 MS.gene26258:CDS 50.0%
TCCACCGTCATGAAACTGGA+TGG + chr5.4:59054583-59054602 MS.gene26258:CDS 50.0%
TCCATCCAGTTTCATGACGG+TGG - chr5.4:59054587-59054606 None:intergenic 50.0%
TCGTTGACAGCGTGATACTC+CGG + chr5.4:59053839-59053858 MS.gene26258:intron 50.0%
TCTCCAATCTCAGTGGCCAA+CGG - chr5.4:59055367-59055386 None:intergenic 50.0%
TGGTCGCAAGCTCAAAGAGA+TGG + chr5.4:59055130-59055149 MS.gene26258:CDS 50.0%
TTACCAGACAAAGCTGGGAG+GGG - chr5.4:59054821-59054840 None:intergenic 50.0%
TTGGCCACTGAGATTGGAGA+AGG + chr5.4:59055367-59055386 MS.gene26258:CDS 50.0%
! ACGATGCCTCGGATGTTTTG+TGG - chr5.4:59058046-59058065 None:intergenic 50.0%
! CCCGCATTTGTTGCAGAGTT+TGG - chr5.4:59053453-59053472 None:intergenic 50.0%
! CCCTCTGATGCCAATTTTGG+TGG + chr5.4:59054128-59054147 MS.gene26258:intron 50.0%
! TGTGCTCCTCTAAAGGTCTC+GGG + chr5.4:59054098-59054117 MS.gene26258:intron 50.0%
! TGTTTTCCCTGTCCACTTGG+TGG - chr5.4:59058099-59058118 None:intergenic 50.0%
!! CCCTAGGATTAGTCGGTCAT+TGG + chr5.4:59054218-59054237 MS.gene26258:intron 50.0%
!! CTGCATTGGCAAGAGCATCT+AGG - chr5.4:59057969-59057988 None:intergenic 50.0%
AAGCTGGGAGGGGTTAACAC+AGG - chr5.4:59054811-59054830 None:intergenic 55.0%
AATCCCACCGTCCAATTGCG+GGG - chr5.4:59054194-59054213 None:intergenic 55.0%
AGGCAAGGCAAGTGCATGTC+GGG - chr5.4:59058125-59058144 None:intergenic 55.0%
ATCAGACCAGCTCGGTCCAA+AGG + chr5.4:59057517-59057536 MS.gene26258:CDS 55.0%
CAATCCCACCGTCCAATTGC+GGG - chr5.4:59054195-59054214 None:intergenic 55.0%
CAGGCAAGGCAAGTGCATGT+CGG - chr5.4:59058126-59058145 None:intergenic 55.0%
CCAATCCCACCGTCCAATTG+CGG - chr5.4:59054196-59054215 None:intergenic 55.0%
CCGAGTGATGCAGGTCGAAT+TGG + chr5.4:59056026-59056045 MS.gene26258:CDS 55.0%
CCTGTGAGACTCTTAAGCGC+CGG + chr5.4:59058142-59058161 MS.gene26258:CDS 55.0%
CCTTACCAGACAAAGCTGGG+AGG - chr5.4:59054823-59054842 None:intergenic 55.0%
CTTGTTCCTTTGGACCGAGC+TGG - chr5.4:59057526-59057545 None:intergenic 55.0%
GGGTGGTCTTTGATCTCTGG+TGG + chr5.4:59053422-59053441 MS.gene26258:CDS 55.0%
GGTTCTGCATCAGACCAGCT+CGG + chr5.4:59057509-59057528 MS.gene26258:CDS 55.0%
GGTTGTTGAGCCTAGTGCTG+CGG + chr5.4:59058335-59058354 MS.gene26258:CDS 55.0%
GTTGTTGAGCCTAGTGCTGC+GGG + chr5.4:59058336-59058355 MS.gene26258:CDS 55.0%
TCCAATTGTCCCGCAGCACT+AGG - chr5.4:59058348-59058367 None:intergenic 55.0%
TGATCTCTCATCCACCACGC+CGG + chr5.4:59055503-59055522 MS.gene26258:CDS 55.0%
TTAAATGGGCCCCCCGCAAT+TGG + chr5.4:59054180-59054199 MS.gene26258:intron 55.0%
TTCCCCTTCACATCAGCAGG+TGG - chr5.4:59055529-59055548 None:intergenic 55.0%
! CCTCCCAGCTTTGTCTGGTA+AGG + chr5.4:59054820-59054839 MS.gene26258:intron 55.0%
! TAACCCCTCCCAGCTTTGTC+TGG + chr5.4:59054815-59054834 MS.gene26258:CDS 55.0%
! TTACCCTGATGGAGAGGCAC+TGG - chr5.4:59057184-59057203 None:intergenic 55.0%
!! AAACATCCGAGGCATCGTCC+TGG + chr5.4:59058048-59058067 MS.gene26258:CDS 55.0%
!! TACCCACTTGGTTGGCCTAG+CGG + chr5.4:59054054-59054073 MS.gene26258:intron 55.0%
!! TTTGGCTTGACACTAGGCGG+CGG - chr5.4:59056997-59057016 None:intergenic 55.0%
ACACCGCTAGGCCAACCAAG+TGG - chr5.4:59054060-59054079 None:intergenic 60.0%
ATCCCACCGTCCAATTGCGG+GGG - chr5.4:59054193-59054212 None:intergenic 60.0%
CACCGCTAGGCCAACCAAGT+GGG - chr5.4:59054059-59054078 None:intergenic 60.0%
CAGCTGACGACGACTCGTCA+GGG - chr5.4:59058017-59058036 None:intergenic 60.0%
CCGCAATTGGACGGTGGGAT+TGG + chr5.4:59054193-59054212 MS.gene26258:intron 60.0%
CCGGCGCTTAAGAGTCTCAC+AGG - chr5.4:59058145-59058164 None:intergenic 60.0%
CCTTCACATCAGCAGGTGGC+CGG - chr5.4:59055525-59055544 None:intergenic 60.0%
CGGCCACCTGCTGATGTGAA+GGG + chr5.4:59055523-59055542 MS.gene26258:CDS 60.0%
CTGCCGTTGGCCACTGAGAT+TGG + chr5.4:59055361-59055380 MS.gene26258:CDS 60.0%
GATCCCAAGCCAACACCGCT+AGG - chr5.4:59054072-59054091 None:intergenic 60.0%
GCCTAGTGCTGCGGGACAAT+TGG + chr5.4:59058344-59058363 MS.gene26258:CDS 60.0%
GGCCACCTGCTGATGTGAAG+GGG + chr5.4:59055524-59055543 MS.gene26258:CDS 60.0%
GTGCATCCAGGACGATGCCT+CGG - chr5.4:59058057-59058076 None:intergenic 60.0%
! GCTCCCAAAAGCGTGTGCTG+AGG + chr5.4:59056058-59056077 MS.gene26258:CDS 60.0%
!! CTTGGTTGGCCTAGCGGTGT+TGG + chr5.4:59054060-59054079 MS.gene26258:intron 60.0%
!! TGGCCTAGCGGTGTTGGCTT+GGG + chr5.4:59054066-59054085 MS.gene26258:intron 60.0%
!! TTGGCCTAGCGGTGTTGGCT+TGG + chr5.4:59054065-59054084 MS.gene26258:intron 60.0%
ATGGGCCCCCCGCAATTGGA+CGG + chr5.4:59054184-59054203 MS.gene26258:intron 65.0%
CCAGCTGACGACGACTCGTC+AGG - chr5.4:59058018-59058037 None:intergenic 65.0%
CCGGCCACCTGCTGATGTGA+AGG + chr5.4:59055522-59055541 MS.gene26258:CDS 65.0%
CCTGACGAGTCGTCGTCAGC+TGG + chr5.4:59058015-59058034 MS.gene26258:CDS 65.0%
GACGGTGGGATTGGACCCCT+AGG + chr5.4:59054202-59054221 MS.gene26258:intron 65.0%
TCCCACCGTCCAATTGCGGG+GGG - chr5.4:59054192-59054211 None:intergenic 65.0%
ACATCAGCAGGTGGCCGGCG+TGG - chr5.4:59055520-59055539 None:intergenic 70.0%
GCCCCCCGCAATTGGACGGT+GGG + chr5.4:59054188-59054207 MS.gene26258:intron 70.0%
GGCCCCCCGCAATTGGACGG+TGG + chr5.4:59054187-59054206 MS.gene26258:intron 75.0%
TCAGCAGGTGGCCGGCGTGG+TGG - chr5.4:59055517-59055536 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 59053359 59058434 59053359 ID=MS.gene26258
chr5.4 mRNA 59053359 59058434 59053359 ID=MS.gene26258.t1;Parent=MS.gene26258
chr5.4 exon 59053359 59053471 59053359 ID=MS.gene26258.t1.exon1;Parent=MS.gene26258.t1
chr5.4 CDS 59053359 59053471 59053359 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59054548 59054629 59054548 ID=MS.gene26258.t1.exon2;Parent=MS.gene26258.t1
chr5.4 CDS 59054548 59054629 59054548 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59054735 59054836 59054735 ID=MS.gene26258.t1.exon3;Parent=MS.gene26258.t1
chr5.4 CDS 59054735 59054836 59054735 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59054974 59055614 59054974 ID=MS.gene26258.t1.exon4;Parent=MS.gene26258.t1
chr5.4 CDS 59054974 59055614 59054974 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59055983 59056079 59055983 ID=MS.gene26258.t1.exon5;Parent=MS.gene26258.t1
chr5.4 CDS 59055983 59056079 59055983 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59056191 59056365 59056191 ID=MS.gene26258.t1.exon6;Parent=MS.gene26258.t1
chr5.4 CDS 59056191 59056365 59056191 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59056446 59056522 59056446 ID=MS.gene26258.t1.exon7;Parent=MS.gene26258.t1
chr5.4 CDS 59056446 59056522 59056446 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59056631 59057056 59056631 ID=MS.gene26258.t1.exon8;Parent=MS.gene26258.t1
chr5.4 CDS 59056631 59057056 59056631 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59057153 59057199 59057153 ID=MS.gene26258.t1.exon9;Parent=MS.gene26258.t1
chr5.4 CDS 59057153 59057199 59057153 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59057502 59057569 59057502 ID=MS.gene26258.t1.exon10;Parent=MS.gene26258.t1
chr5.4 CDS 59057502 59057569 59057502 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4 exon 59057902 59058434 59057902 ID=MS.gene26258.t1.exon11;Parent=MS.gene26258.t1
chr5.4 CDS 59057902 59058434 59057902 ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
Gene Sequence

>MS.gene26258

ATGGGGGTTGAAGTGTGTATGAATAATTATTGTAAGGAAGGTTCAACTGGTGAATGGAAGAAAGGGTGGTCTTTGATCTCTGGTGGGTTTGCCAAACTCTGCAACAAATGCGGGTAAATTTCATTTCTTTAGTTTATCTCTCTTTTACTTGAGCTGAAATGTTATCAGAAATTTGATTTCACAATGTTATAATTTTGGGGTTTTGACTTTGATGTTATTGTTTTGATCCAAATTAATAATTTTGGGATTTGAGGTTGACTTGAGTGTTCTTATGAGTTCATGTTGGGTTAGTCAATAGTCAAAAGTTTCAACCCTTTTTCTTTTCTGGGGTTTTCAGGGATTTCCTGTAACTGTGCATTTATGCGTGTTTGAATCTCAGCCTTTGGATGAAAATGATGATCAGACCACTCATATTTAAAGTTGTATTTTAAAGTTGAAATCAAAATATGAAATGCTCGGTTTTCATCCAAGAACTGAGATTCGTTGACAGCGTGATACTCCGGTCTTAAATATAAGCAAAAGTTGTTCAGAAAAAGTTGATGTAGACCAAATACATCAACTTTCTTTGACCAACTTTTACTTATATTTAAGACGGGACGTAACCATCAGTTTAAGTAATGTACCCTTTCTGTTCAGTCTACATTTGTGTATTTGAACTCATGATGCTGTTTCCTGCAAATGATTATCTTAATGTGTACCCACTTGGTTGGCCTAGCGGTGTTGGCTTGGGATCTTACTTTGTGCTCCTCTAAAGGTCTCGGGATTGATTCCCTCTGATGCCAATTTTGGTGGGCTAGTCCATACAAAGTCTTGCTCTGACTTTAAATGGGCCCCCCGCAATTGGACGGTGGGATTGGACCCCTAGGATTAGTCGGTCATTGGGATTATACCGAGTTTTCTAAAAAAAAATTGGATTAATAAAACTTGATCTTGCTGTTCTCAGTCTGATGCTACTTTACCTGCTTTTGTTCTGAGGTTTCTTGGTTTTGTTAGTAAGTCAGGTTCAGCTCTTTAAAGTCCATGTTGCAATTTATAGGGTAAAAATATATTTTTTGCTTATTCAAATCAAACATATGTTTAGGTTTTGCTGTTAAGCAGTCTGACTGTCTAGAATTTTTTATCAGTAATGATTTATTCATTGACTATCCCCTGCTTACGGATTCTTAATTTATCACTCTTGTGTGTTTAGACTTGCCTATGAGAATTCACTTTTCTGTGATAAATTCCACCGTCATGAAACTGGATGGAGGAAATGCAGCAATTGCAGCAAGGTAAAATTTATGTTTGATTTTTTGTACTATTTAAATACTCATTAAGCCTTGTCTTTCTCTCCTTTGATATTGAAATATATTATTTGATTTTTTTTTTTTTTGCAGCCTATCCACAGTGGATGTATAGTATCAAAGTCTTCGTTCGAGTACCTTGATTTCGGTGGTATAAGTTGTGTTACCTGTGTTAACCCCTCCCAGCTTTGTCTGGTAAGGTTAAGTTGAATATTCATTTCTGTATAATGATTTCGAACCCGAAATTTTGTTATTTGATTCTCCGCCATTGTGATACCGACACATAAATTTACAGATTCATGTTATCATTGAATGTTTTTCTATGGATACAGGATACTGAAAATCATAATAGGTTCCCTCAATCGACCAAAAACAATGCAAGTGATCGATATGGTGAACATATTGATGGTAGACTACTGGTGGAACAAGCTGTTAAAGGAAACCTTATGCAGTTGTGTAGAATTGGTGAAGTCGGTGAATCAAGCCGTTGGTCGCAAGCTCAAAGAGATGGCATGGTTTCATGTATTGGTCCAAAGACCGAAGAAGTTAAGTGTCAATTCAACAAAGAGGATACAAGATTTTTGAATGTAATGAAACATTCTAGTCCTTTAACAGCATTTACTACATTGGAAAATAATAGACCAACATGGGAGACTAAAAGTATAGATGAAACGCTTTCACTAAAGATGGCTCTAGGAACTTCATCAAGAAATTCTGTTCTGCCGTTGGCCACTGAGATTGGAGAAGGTAAACTTGAGGGTAAAGCATCTTCTCATTTTCAACAAGGGCAAACATCTCAGTCTATATTGGCTCAACTATCAAAGACTGGAATTACCATGAGTCTTGAAACAAATAAAGGCATGATCTCTCATCCACCACGCCGGCCACCTGCTGATGTGAAGGGGAAAAATCAGTTACTTTCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGAAATTGTCGGGGGAGTATCCTTTATATTTAGGTTCTGTTTGGATAAACAACTTAATAAGCTCTTATATCATAAATACTTATCATATAAGTGCTTATGTATAAGCTGTTTTTGAAACTAAGATAAAATAAAGTCAAACTGTTTTCATATAAGCTATAAGTTGTTTTCATAAGCTATCCTAGAGAACTTATCGAAATAAGCTGAAAACAACTCATGGACATGCCGTTAAGCTGTTTCGATAAACTCTCTCAAATATTATCACGAGTACTTATGCAAATAGTAAGCTCAAATAAGTCAATCCTAACAAGCCCTTAGTATTTTGGTCTATTATTTAAACATGCAAAGTTGATTCATCAACAGTTTCCCTTAACATTATTATCTCAGTTTGAAGTCTACTGTAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTGCTCCCAAAAGCGTGTGCTGAGGTATACTTTGATGTTTATCTTGACTCTGTCTATAGAAGATTTTTTATTTTAAAGAAATACACATTTCCCTGTAATTGCGGCATGTATGACAAATTGGTATACGAATTTCAGGCTTTTCTTCCTCGTATTTTGCAATCAGAAGGTGTTCCTTTACAGTTCCAAGATATAATGGGGAACGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCTTGCAATTAAATGCTGGTGATACTGGTATACGTCAATCTACGTCATGATTTTGTTTCACATCTAAAGTTATCTTCAATTGATATGAATTTTTTTTTTTGTTACAGTAACATTTAGTCGGATAGATCCTGGGAAAAAATTTCTATTTGGTTTTAGAAGGTCATTGACTTCTGTTGTTACACAGGTTATGACATGATTTTCAGTTTTACTATCTTTAGCTTCTTCAGATGATAACATGTTTATATTCTTCACTTATTTTTGAAAATATAATTAAAGGGTTATCTTTAAACAGGATGCCTCTACATCTTCTCATTCTAACGGCATTTCGATAAAGGATCCAAACTTTTCTGGTGCACCTCAGAATTTGAACTCATTAGGTAGTTTTTCTAATCTTCTTCAATCAATGAAAGGTAACGGGGAACCTTACTTAAATGGACATTCAGAACATCTGCGTTTGGGTAATGGAACTGCTGATTGGCTTAAAACTGCACATAGTGAGGAGGAAATGAACAATGGTCCATTGCAGCAAATGGTTTCAGTTTCAGAGAAGAAGAGGTCTCGCAATATTGGGACGAAAACTAAGAGGTTGCACATTCATAGCGAAGATGCTATGGAATTGAGACTTACATGGGAAGAAGCACAAGAATTTCTTTGTCCGCCGCCTAGTGTCAAGCCAAATATTGTAACAATTGAGGACCAAGTATTTGAAGAATATGATGTAAGTGAGAAACTGTGAATGATATAGTTTGGATTTTTGGAGAATCATCTTCAGATTTCTGTTACCTGGCTTATGTTTTTTATTTATTTCATTTAGGAACCCCCGGTTTTCGGAAAGATTAAAACCAGTGCCTCTCCATCAGGGTAAGATTATATACCTTGCACATTTAGCACTATCAGTTTTATATGCTGTTGATCACTTATTCATGCCTTCAAATATGTACAATGATTGTTAGAAGATATGAAAATATCTTATAATATATATTGGTATTTTCATTGAGTATCTTTGAAGTAACAGTCAATATTTTTTGAACTATATTATTATCTTTAGTCCTATTTCAAATGTTTGGGATGCAGACAGGTCAACATTATTCGGTGCTTTTGAACTTCTACTGATTGAAGTGAGTATATCGTAATTATTCTTATTATGTACTATGGTTTTTCAGGTCTTCAGGTTCTGCATCAGACCAGCTCGGTCCAAAGGAACAAGAAAGTCTTCAAAGAACCAAAAAAGGTACGATCCTGCTACCGTTTTTTTTTATTTATACATGCTCTGTAGTAGTCATGTTTATCGGAACAGAGTTAGAGGTTGATGCTTCAGTAAAATTGATTAAATGATCATTCTGTTCCGTGCATGTGTGAAATGTTTTACATATATCTAAATATTTTTGGGATGTGTGGATTGGTTTCATAAATGATATAATCCTTGTTAAATTCTGTGCTTGCTGTCTAATGTTCATTCATTGAATCATATTCCTAAAGTTATTTCCAAAGCACTGAAGTAGTCCTTGATAACTAGTACTTAATTAATTCTTATATTTTATGGATGTGTATGATCTTCCGCAGATTCTAAAAAGAAGCGAAAAATTGCTGAAAAGAGCAAGTCAATTCAAGAACACAAGCTTTCAGGCCTAGATGCTCTTGCCAATGCAGCAGTTTTAGGCAATAATCTTGCTGACCCTGACGAGTCGTCGTCAGCTGGAATCACCACAAAACATCCGAGGCATCGTCCTGGATGCACTTGTATCGTGTGCATTCAACCACCAAGTGGACAGGGAAAACATGACCCGACATGCACTTGCCTTGCCTGTGAGACTCTTAAGCGCCGGTTCAAGAGCCTTACGATGCGTAAGAAGAAAAACCAATTAGAATCTGAAGCAGTTGCTGACCAAAACAATCAAATTAATCATATAGATGAAGCAGGTACTAGTGGTGGTGTATCGAGACAAGATACAAGTCACTCAACGGATGAGGGAAGCCTAAATGGAGGTCAGCTTGAGGTTGTTGAGCCTAGTGCTGCGGGACAATTGGATTTGAATTCTCATCCCAGTCATGAAGAAATGGAAACTGATACATATAACAGGCCAAAGCATGACTAG
Protein sequence

>MS.gene26258.t1

MGVEVCMNNYCKEGSTGEWKKGWSLISGGFAKLCNKCGLAYENSLFCDKFHRHETGWRKCSNCSKPIHSGCIVSKSSFEYLDFGGISCVTCVNPSQLCLDTENHNRFPQSTKNNASDRYGEHIDGRLLVEQAVKGNLMQLCRIGEVGESSRWSQAQRDGMVSCIGPKTEEVKCQFNKEDTRFLNVMKHSSPLTAFTTLENNRPTWETKSIDETLSLKMALGTSSRNSVLPLATEIGEGKLEGKASSHFQQGQTSQSILAQLSKTGITMSLETNKGMISHPPRRPPADVKGKNQLLSRYWPRITDQELEKLSGDLKSTVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGKKFLFGFRRSLTSVVTQDASTSSHSNGISIKDPNFSGAPQNLNSLGSFSNLLQSMKGNGEPYLNGHSEHLRLGNGTADWLKTAHSEEEMNNGPLQQMVSVSEKKRSRNIGTKTKRLHIHSEDAMELRLTWEEAQEFLCPPPSVKPNIVTIEDQVFEEYDEPPVFGKIKTSASPSGSSGSASDQLGPKEQESLQRTKKDSKKKRKIAEKSKSIQEHKLSGLDALANAAVLGNNLADPDESSSAGITTKHPRHRPGCTCIVCIQPPSGQGKHDPTCTCLACETLKRRFKSLTMRKKKNQLESEAVADQNNQINHIDEAGTSGGVSRQDTSHSTDEGSLNGGQLEVVEPSAAGQLDLNSHPSHEEMETDTYNRPKHD