AlfalfaGEDB | MS.gene26258

M. sativa cultivar XinJiangDaYe / MS.gene26258

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26258.t1	XP_003616034.2	95.9	786	32	0	1	786	1	786	0.00E+00	1492.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26258.t1	Q6Z3U3	40.9	849	397	18	6	771	17	843	6.4e-140	499.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26258.t1	G7K0T7	95.9	786	32	0	1	786	1	786	0.0e+00	1492.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene26258.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26258.t1	MTR_5g075410	95.929	786	32	0	1	786	1	786	0.0	1531
MS.gene26258.t1	MTR_3g467380	56.190	840	298	14	1	778	1	832	0.0	855
MS.gene26258.t1	MTR_4g028130	42.584	836	399	11	1	777	1	814	0.0	613
MS.gene26258.t1	MTR_4g028130	41.268	836	374	11	1	777	1	778	0.0	582
MS.gene26258.t1	MTR_4g028130	45.008	591	291	7	1	578	1	570	1.12e-159	478
MS.gene26258.t1	MTR_2g011940	41.241	548	222	12	283	774	305	808	3.62e-110	357
MS.gene26258.t1	MTR_2g011940	45.455	121	49	4	6	119	22	132	1.81e-22	103
MS.gene26258.t1	MTR_2g011940	47.138	297	117	4	283	578	314	571	6.84e-78	264
MS.gene26258.t1	MTR_2g011940	45.455	121	49	4	6	119	31	141	1.91e-22	103
MS.gene26258.t1	MTR_2g011940	47.138	297	117	4	283	578	314	571	1.61e-77	263

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26258.t1	AT4G32010	41.153	746	314	15	3	706	4	666	8.58e-175	522
MS.gene26258.t1	AT2G30470	40.564	816	360	19	1	774	6	738	5.08e-173	518
MS.gene26258.t1	AT4G32010	40.933	750	314	16	3	706	4	670	6.87e-173	517
MS.gene26258.t1	AT4G21550	33.333	453	260	10	3	437	14	442	4.71e-69	237
MS.gene26258.t1	AT4G21550	33.481	451	258	10	5	437	16	442	3.98e-68	235
MS.gene26258.t1	AT4G21550	33.333	453	260	10	3	437	14	442	4.91e-68	239
MS.gene26258.t1	AT4G21550	40.336	119	56	4	657	774	551	655	2.63e-12	70.9
MS.gene26258.t1	AT3G26790	45.882	85	45	1	321	404	91	175	5.96e-18	86.3
MS.gene26258.t1	AT3G24650	41.176	102	58	2	321	420	571	672	6.65e-16	82.4
MS.gene26258.t1	AT1G28300	41.414	99	56	2	321	418	170	267	1.69e-15	79.3

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Find 198 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTGCCTCTCCATC+AGG	0.394979	5.4:+59057177	MS.gene26258:CDS
AAACATCCGAGGCATCGTCC+TGG	0.526966	5.4:+59058048	MS.gene26258:CDS
AAACCAGTGCCTCTCCATCA+GGG	0.622368	5.4:+59057178	MS.gene26258:CDS
AAAGGGTGGTCTTTGATCTC+TGG	0.456650	5.4:+59053419	MS.gene26258:CDS
AAATTCCACCGTCATGAAAC+TGG	0.376289	5.4:+59054579	MS.gene26258:CDS
AACAATGCAAGTGATCGATA+TGG	0.408713	5.4:+59055013	MS.gene26258:CDS
AACGGGGAACCTTACTTAAA+TGG	0.309832	5.4:+59056751	MS.gene26258:CDS
AACTTATACCACCGAAATCA+AGG	0.500512	5.4:-59054779	None:intergenic
AAGAAATTCTGTTCTGCCGT+TGG	0.479555	5.4:+59055348	MS.gene26258:CDS
AAGAAGAGGTCTCGCAATAT+TGG	0.296576	5.4:+59056886	MS.gene26258:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCCCAGAAAAGAAAAA+GGG	-	chr5.4:59053673-59053692	None:intergenic	30.0%
AAATGTAGACTGAACAGAAA+GGG	-	chr5.4:59053984-59054003	None:intergenic	30.0%
AAATTAAGAATCCGTAAGCA+GGG	-	chr5.4:59054509-59054528	None:intergenic	30.0%
AAGTCCATGTTGCAATTTAT+AGG	+	chr5.4:59054373-59054392	MS.gene26258:intron	30.0%
AATAAGCTGAAAACAACTCA+TGG	+	chr5.4:59055793-59055812	MS.gene26258:intron	30.0%
ACAGAAAAGTGAATTCTCAT+AGG	-	chr5.4:59054556-59054575	None:intergenic	30.0%
ACTTAACACCTTCTCAAATA+AGG	-	chr5.4:59056006-59056025	None:intergenic	30.0%
AGTCCATGTTGCAATTTATA+GGG	+	chr5.4:59054374-59054393	MS.gene26258:intron	30.0%
AGTCTTCAAAGAACCAAAAA+AGG	+	chr5.4:59057548-59057567	MS.gene26258:CDS	30.0%
AGTTTATCGAAACAGCTTAA+CGG	-	chr5.4:59055824-59055843	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	59053359	59058434	59053359	ID=MS.gene26258
chr5.4	mRNA	59053359	59058434	59053359	ID=MS.gene26258.t1;Parent=MS.gene26258
chr5.4	exon	59053359	59053471	59053359	ID=MS.gene26258.t1.exon1;Parent=MS.gene26258.t1
chr5.4	CDS	59053359	59053471	59053359	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59054548	59054629	59054548	ID=MS.gene26258.t1.exon2;Parent=MS.gene26258.t1
chr5.4	CDS	59054548	59054629	59054548	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59054735	59054836	59054735	ID=MS.gene26258.t1.exon3;Parent=MS.gene26258.t1
chr5.4	CDS	59054735	59054836	59054735	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59054974	59055614	59054974	ID=MS.gene26258.t1.exon4;Parent=MS.gene26258.t1
chr5.4	CDS	59054974	59055614	59054974	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59055983	59056079	59055983	ID=MS.gene26258.t1.exon5;Parent=MS.gene26258.t1
chr5.4	CDS	59055983	59056079	59055983	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59056191	59056365	59056191	ID=MS.gene26258.t1.exon6;Parent=MS.gene26258.t1
chr5.4	CDS	59056191	59056365	59056191	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59056446	59056522	59056446	ID=MS.gene26258.t1.exon7;Parent=MS.gene26258.t1
chr5.4	CDS	59056446	59056522	59056446	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59056631	59057056	59056631	ID=MS.gene26258.t1.exon8;Parent=MS.gene26258.t1
chr5.4	CDS	59056631	59057056	59056631	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59057153	59057199	59057153	ID=MS.gene26258.t1.exon9;Parent=MS.gene26258.t1
chr5.4	CDS	59057153	59057199	59057153	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59057502	59057569	59057502	ID=MS.gene26258.t1.exon10;Parent=MS.gene26258.t1
chr5.4	CDS	59057502	59057569	59057502	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1
chr5.4	exon	59057902	59058434	59057902	ID=MS.gene26258.t1.exon11;Parent=MS.gene26258.t1
chr5.4	CDS	59057902	59058434	59057902	ID=cds.MS.gene26258.t1;Parent=MS.gene26258.t1

Gene Sequence

>MS.gene26258

ATGGGGGTTGAAGTGTGTATGAATAATTATTGTAAGGAAGGTTCAACTGGTGAATGGAAGAAAGGGTGGTCTTTGATCTCTGGTGGGTTTGCCAAACTCTGCAACAAATGCGGGTAAATTTCATTTCTTTAGTTTATCTCTCTTTTACTTGAGCTGAAATGTTATCAGAAATTTGATTTCACAATGTTATAATTTTGGGGTTTTGACTTTGATGTTATTGTTTTGATCCAAATTAATAATTTTGGGATTTGAGGTTGACTTGAGTGTTCTTATGAGTTCATGTTGGGTTAGTCAATAGTCAAAAGTTTCAACCCTTTTTCTTTTCTGGGGTTTTCAGGGATTTCCTGTAACTGTGCATTTATGCGTGTTTGAATCTCAGCCTTTGGATGAAAATGATGATCAGACCACTCATATTTAAAGTTGTATTTTAAAGTTGAAATCAAAATATGAAATGCTCGGTTTTCATCCAAGAACTGAGATTCGTTGACAGCGTGATACTCCGGTCTTAAATATAAGCAAAAGTTGTTCAGAAAAAGTTGATGTAGACCAAATACATCAACTTTCTTTGACCAACTTTTACTTATATTTAAGACGGGACGTAACCATCAGTTTAAGTAATGTACCCTTTCTGTTCAGTCTACATTTGTGTATTTGAACTCATGATGCTGTTTCCTGCAAATGATTATCTTAATGTGTACCCACTTGGTTGGCCTAGCGGTGTTGGCTTGGGATCTTACTTTGTGCTCCTCTAAAGGTCTCGGGATTGATTCCCTCTGATGCCAATTTTGGTGGGCTAGTCCATACAAAGTCTTGCTCTGACTTTAAATGGGCCCCCCGCAATTGGACGGTGGGATTGGACCCCTAGGATTAGTCGGTCATTGGGATTATACCGAGTTTTCTAAAAAAAAATTGGATTAATAAAACTTGATCTTGCTGTTCTCAGTCTGATGCTACTTTACCTGCTTTTGTTCTGAGGTTTCTTGGTTTTGTTAGTAAGTCAGGTTCAGCTCTTTAAAGTCCATGTTGCAATTTATAGGGTAAAAATATATTTTTTGCTTATTCAAATCAAACATATGTTTAGGTTTTGCTGTTAAGCAGTCTGACTGTCTAGAATTTTTTATCAGTAATGATTTATTCATTGACTATCCCCTGCTTACGGATTCTTAATTTATCACTCTTGTGTGTTTAGACTTGCCTATGAGAATTCACTTTTCTGTGATAAATTCCACCGTCATGAAACTGGATGGAGGAAATGCAGCAATTGCAGCAAGGTAAAATTTATGTTTGATTTTTTGTACTATTTAAATACTCATTAAGCCTTGTCTTTCTCTCCTTTGATATTGAAATATATTATTTGATTTTTTTTTTTTTTGCAGCCTATCCACAGTGGATGTATAGTATCAAAGTCTTCGTTCGAGTACCTTGATTTCGGTGGTATAAGTTGTGTTACCTGTGTTAACCCCTCCCAGCTTTGTCTGGTAAGGTTAAGTTGAATATTCATTTCTGTATAATGATTTCGAACCCGAAATTTTGTTATTTGATTCTCCGCCATTGTGATACCGACACATAAATTTACAGATTCATGTTATCATTGAATGTTTTTCTATGGATACAGGATACTGAAAATCATAATAGGTTCCCTCAATCGACCAAAAACAATGCAAGTGATCGATATGGTGAACATATTGATGGTAGACTACTGGTGGAACAAGCTGTTAAAGGAAACCTTATGCAGTTGTGTAGAATTGGTGAAGTCGGTGAATCAAGCCGTTGGTCGCAAGCTCAAAGAGATGGCATGGTTTCATGTATTGGTCCAAAGACCGAAGAAGTTAAGTGTCAATTCAACAAAGAGGATACAAGATTTTTGAATGTAATGAAACATTCTAGTCCTTTAACAGCATTTACTACATTGGAAAATAATAGACCAACATGGGAGACTAAAAGTATAGATGAAACGCTTTCACTAAAGATGGCTCTAGGAACTTCATCAAGAAATTCTGTTCTGCCGTTGGCCACTGAGATTGGAGAAGGTAAACTTGAGGGTAAAGCATCTTCTCATTTTCAACAAGGGCAAACATCTCAGTCTATATTGGCTCAACTATCAAAGACTGGAATTACCATGAGTCTTGAAACAAATAAAGGCATGATCTCTCATCCACCACGCCGGCCACCTGCTGATGTGAAGGGGAAAAATCAGTTACTTTCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGAAATTGTCGGGGGAGTATCCTTTATATTTAGGTTCTGTTTGGATAAACAACTTAATAAGCTCTTATATCATAAATACTTATCATATAAGTGCTTATGTATAAGCTGTTTTTGAAACTAAGATAAAATAAAGTCAAACTGTTTTCATATAAGCTATAAGTTGTTTTCATAAGCTATCCTAGAGAACTTATCGAAATAAGCTGAAAACAACTCATGGACATGCCGTTAAGCTGTTTCGATAAACTCTCTCAAATATTATCACGAGTACTTATGCAAATAGTAAGCTCAAATAAGTCAATCCTAACAAGCCCTTAGTATTTTGGTCTATTATTTAAACATGCAAAGTTGATTCATCAACAGTTTCCCTTAACATTATTATCTCAGTTTGAAGTCTACTGTAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTGCTCCCAAAAGCGTGTGCTGAGGTATACTTTGATGTTTATCTTGACTCTGTCTATAGAAGATTTTTTATTTTAAAGAAATACACATTTCCCTGTAATTGCGGCATGTATGACAAATTGGTATACGAATTTCAGGCTTTTCTTCCTCGTATTTTGCAATCAGAAGGTGTTCCTTTACAGTTCCAAGATATAATGGGGAACGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCTTGCAATTAAATGCTGGTGATACTGGTATACGTCAATCTACGTCATGATTTTGTTTCACATCTAAAGTTATCTTCAATTGATATGAATTTTTTTTTTTGTTACAGTAACATTTAGTCGGATAGATCCTGGGAAAAAATTTCTATTTGGTTTTAGAAGGTCATTGACTTCTGTTGTTACACAGGTTATGACATGATTTTCAGTTTTACTATCTTTAGCTTCTTCAGATGATAACATGTTTATATTCTTCACTTATTTTTGAAAATATAATTAAAGGGTTATCTTTAAACAGGATGCCTCTACATCTTCTCATTCTAACGGCATTTCGATAAAGGATCCAAACTTTTCTGGTGCACCTCAGAATTTGAACTCATTAGGTAGTTTTTCTAATCTTCTTCAATCAATGAAAGGTAACGGGGAACCTTACTTAAATGGACATTCAGAACATCTGCGTTTGGGTAATGGAACTGCTGATTGGCTTAAAACTGCACATAGTGAGGAGGAAATGAACAATGGTCCATTGCAGCAAATGGTTTCAGTTTCAGAGAAGAAGAGGTCTCGCAATATTGGGACGAAAACTAAGAGGTTGCACATTCATAGCGAAGATGCTATGGAATTGAGACTTACATGGGAAGAAGCACAAGAATTTCTTTGTCCGCCGCCTAGTGTCAAGCCAAATATTGTAACAATTGAGGACCAAGTATTTGAAGAATATGATGTAAGTGAGAAACTGTGAATGATATAGTTTGGATTTTTGGAGAATCATCTTCAGATTTCTGTTACCTGGCTTATGTTTTTTATTTATTTCATTTAGGAACCCCCGGTTTTCGGAAAGATTAAAACCAGTGCCTCTCCATCAGGGTAAGATTATATACCTTGCACATTTAGCACTATCAGTTTTATATGCTGTTGATCACTTATTCATGCCTTCAAATATGTACAATGATTGTTAGAAGATATGAAAATATCTTATAATATATATTGGTATTTTCATTGAGTATCTTTGAAGTAACAGTCAATATTTTTTGAACTATATTATTATCTTTAGTCCTATTTCAAATGTTTGGGATGCAGACAGGTCAACATTATTCGGTGCTTTTGAACTTCTACTGATTGAAGTGAGTATATCGTAATTATTCTTATTATGTACTATGGTTTTTCAGGTCTTCAGGTTCTGCATCAGACCAGCTCGGTCCAAAGGAACAAGAAAGTCTTCAAAGAACCAAAAAAGGTACGATCCTGCTACCGTTTTTTTTTATTTATACATGCTCTGTAGTAGTCATGTTTATCGGAACAGAGTTAGAGGTTGATGCTTCAGTAAAATTGATTAAATGATCATTCTGTTCCGTGCATGTGTGAAATGTTTTACATATATCTAAATATTTTTGGGATGTGTGGATTGGTTTCATAAATGATATAATCCTTGTTAAATTCTGTGCTTGCTGTCTAATGTTCATTCATTGAATCATATTCCTAAAGTTATTTCCAAAGCACTGAAGTAGTCCTTGATAACTAGTACTTAATTAATTCTTATATTTTATGGATGTGTATGATCTTCCGCAGATTCTAAAAAGAAGCGAAAAATTGCTGAAAAGAGCAAGTCAATTCAAGAACACAAGCTTTCAGGCCTAGATGCTCTTGCCAATGCAGCAGTTTTAGGCAATAATCTTGCTGACCCTGACGAGTCGTCGTCAGCTGGAATCACCACAAAACATCCGAGGCATCGTCCTGGATGCACTTGTATCGTGTGCATTCAACCACCAAGTGGACAGGGAAAACATGACCCGACATGCACTTGCCTTGCCTGTGAGACTCTTAAGCGCCGGTTCAAGAGCCTTACGATGCGTAAGAAGAAAAACCAATTAGAATCTGAAGCAGTTGCTGACCAAAACAATCAAATTAATCATATAGATGAAGCAGGTACTAGTGGTGGTGTATCGAGACAAGATACAAGTCACTCAACGGATGAGGGAAGCCTAAATGGAGGTCAGCTTGAGGTTGTTGAGCCTAGTGCTGCGGGACAATTGGATTTGAATTCTCATCCCAGTCATGAAGAAATGGAAACTGATACATATAACAGGCCAAAGCATGACTAG

Protein sequence

>MS.gene26258.t1

MGVEVCMNNYCKEGSTGEWKKGWSLISGGFAKLCNKCGLAYENSLFCDKFHRHETGWRKCSNCSKPIHSGCIVSKSSFEYLDFGGISCVTCVNPSQLCLDTENHNRFPQSTKNNASDRYGEHIDGRLLVEQAVKGNLMQLCRIGEVGESSRWSQAQRDGMVSCIGPKTEEVKCQFNKEDTRFLNVMKHSSPLTAFTTLENNRPTWETKSIDETLSLKMALGTSSRNSVLPLATEIGEGKLEGKASSHFQQGQTSQSILAQLSKTGITMSLETNKGMISHPPRRPPADVKGKNQLLSRYWPRITDQELEKLSGDLKSTVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGKKFLFGFRRSLTSVVTQDASTSSHSNGISIKDPNFSGAPQNLNSLGSFSNLLQSMKGNGEPYLNGHSEHLRLGNGTADWLKTAHSEEEMNNGPLQQMVSVSEKKRSRNIGTKTKRLHIHSEDAMELRLTWEEAQEFLCPPPSVKPNIVTIEDQVFEEYDEPPVFGKIKTSASPSGSSGSASDQLGPKEQESLQRTKKDSKKKRKIAEKSKSIQEHKLSGLDALANAAVLGNNLADPDESSSAGITTKHPRHRPGCTCIVCIQPPSGQGKHDPTCTCLACETLKRRFKSLTMRKKKNQLESEAVADQNNQINHIDEAGTSGGVSRQDTSHSTDEGSLNGGQLEVVEPSAAGQLDLNSHPSHEEMETDTYNRPKHD