Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26341.t1 | KEH31034.1 | 82.2 | 297 | 30 | 2 | 1 | 297 | 1 | 274 | 5.20E-118 | 434.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26341.t1 | Q1PFR7 | 36.1 | 166 | 95 | 3 | 45 | 199 | 100 | 265 | 4.8e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26341.t1 | A0A072UMM3 | 82.2 | 297 | 30 | 2 | 1 | 297 | 1 | 274 | 3.8e-118 | 434.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26341.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26341.t1 | MTR_4g088605 | 82.828 | 297 | 28 | 2 | 1 | 297 | 1 | 274 | 5.50e-169 | 469 |
| MS.gene26341.t1 | MTR_7g059330 | 42.105 | 95 | 54 | 1 | 100 | 193 | 618 | 712 | 9.26e-19 | 87.0 |
| MS.gene26341.t1 | MTR_7g083700 | 33.918 | 171 | 98 | 6 | 98 | 265 | 119 | 277 | 1.89e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26341.t1 | AT1G28300 | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.59e-25 | 102 |
| MS.gene26341.t1 | AT3G24650 | 34.783 | 161 | 94 | 4 | 100 | 256 | 566 | 719 | 4.07e-19 | 87.8 |
| MS.gene26341.t1 | AT3G26790 | 35.294 | 119 | 75 | 2 | 98 | 214 | 84 | 202 | 4.91e-19 | 85.9 |
Find 60 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAGTCGACTAATAATT+TGG | 0.175655 | 4.1:-21334432 | MS.gene26341:CDS |
| TTCCATAGGTATTGGATTAA+TGG | 0.179633 | 4.1:-21335173 | MS.gene26341:intron |
| TTGCAGTATTATTGGTTTCT+TGG | 0.218735 | 4.1:+21334381 | None:intergenic |
| AAACATGTGGAGTTCTTTCT+TGG | 0.273984 | 4.1:+21335980 | None:intergenic |
| TACTGCAATGCCACCTATAC+TGG | 0.293053 | 4.1:-21334366 | MS.gene26341:CDS |
| AGGTGGCATTGCAGTATTAT+TGG | 0.310476 | 4.1:+21334373 | None:intergenic |
| TGCAGTATTATTGGTTTCTT+GGG | 0.336728 | 4.1:+21334382 | None:intergenic |
| TTTACAGTCACCTTTCCATC+TGG | 0.368295 | 4.1:+21335949 | None:intergenic |
| TGGTTTCTTGGGCGACTGAT+TGG | 0.387076 | 4.1:+21334393 | None:intergenic |
| TATACTGGACCATACCGTTT+TGG | 0.393071 | 4.1:-21334351 | MS.gene26341:CDS |
| TATTAGTCGACTGAATTTGT+TGG | 0.408347 | 4.1:+21334438 | None:intergenic |
| TAAAACTAGAATGTATATTC+TGG | 0.416222 | 4.1:-21335150 | MS.gene26341:CDS |
| ATCCCTTCTTTGCTAGGGGC+TGG | 0.418097 | 4.1:+21335351 | None:intergenic |
| CTTCAATCCCTTCTTTGCTA+GGG | 0.422481 | 4.1:+21335346 | None:intergenic |
| AACATGTGGAGTTCTTTCTT+GGG | 0.423807 | 4.1:+21335981 | None:intergenic |
| CTTCCAGCCCCTAGCAAAGA+AGG | 0.423970 | 4.1:-21335354 | MS.gene26341:CDS |
| CTCCCATGCATAGTTTGTAA+TGG | 0.426934 | 4.1:+21335011 | None:intergenic |
| TCTTGGGCGACTGATTGGTT+TGG | 0.430360 | 4.1:+21334398 | None:intergenic |
| CTATGCATGGGAGATTATCT+AGG | 0.431047 | 4.1:-21335001 | MS.gene26341:CDS |
| ACTTCAATCCCTTCTTTGCT+AGG | 0.433841 | 4.1:+21335345 | None:intergenic |
| AAGAGCGATGTTAAGAACTA+TGG | 0.459102 | 4.1:-21335811 | MS.gene26341:CDS |
| ACTTTATTCCTCTTCTCTGA+TGG | 0.466086 | 4.1:-21336202 | MS.gene26341:CDS |
| ATATATATTCTGGTCGTGAA+TGG | 0.483145 | 4.1:-21335311 | MS.gene26341:CDS |
| ATGTATATTCTGGAGGATAC+AGG | 0.488201 | 4.1:-21335140 | MS.gene26341:intron |
| TCCTCAACTTGGAGTTGAAA+GGG | 0.488533 | 4.1:-21336145 | MS.gene26341:CDS |
| TGGGCGACTGATTGGTTTGG+TGG | 0.491784 | 4.1:+21334401 | None:intergenic |
| CTTTATTCCTCTTCTCTGAT+GGG | 0.493478 | 4.1:-21336201 | MS.gene26341:CDS |
| AGATTATCTAGGCCTTTATG+AGG | 0.503786 | 4.1:-21334990 | MS.gene26341:CDS |
| AAACCATTACAAACTATGCA+TGG | 0.506884 | 4.1:-21335014 | MS.gene26341:CDS |
| TTCAATCCCTTCTTTGCTAG+GGG | 0.508172 | 4.1:+21335347 | None:intergenic |
| TTACAGTCACCTTTCCATCT+GGG | 0.509432 | 4.1:+21335950 | None:intergenic |
| ATCATTACCATCTACCAAAA+CGG | 0.511373 | 4.1:+21334337 | None:intergenic |
| CATCGAGGAAATTGTATGCA+TGG | 0.513461 | 4.1:+21336239 | None:intergenic |
| TCCTTGCCTTGGTCTGCACA+AGG | 0.515897 | 4.1:+21334485 | None:intergenic |
| CTCCTCAACTTGGAGTTGAA+AGG | 0.517571 | 4.1:-21336146 | MS.gene26341:CDS |
| ATCGAGGAAATTGTATGCAT+GGG | 0.519150 | 4.1:+21336240 | None:intergenic |
| AAAACGGTATGGTCCAGTAT+AGG | 0.527354 | 4.1:+21334353 | None:intergenic |
| GGAGTAGTTTGAATTATGAA+AGG | 0.529192 | 4.1:+21336165 | None:intergenic |
| ATTCAAACTACTCCTCAACT+TGG | 0.533290 | 4.1:-21336156 | MS.gene26341:CDS |
| TGTTGGTTGGCCAAGTCTGA+TGG | 0.537691 | 4.1:+21334455 | None:intergenic |
| TCCCTTTCAACTCCAAGTTG+AGG | 0.553641 | 4.1:+21336144 | None:intergenic |
| AAAATTCAAATAGAGGGAGG+TGG | 0.561158 | 4.1:-21335385 | MS.gene26341:intron |
| CGATGAACAACAAAGCAGCT+TGG | 0.562949 | 4.1:-21334297 | MS.gene26341:CDS |
| GAAGAGGAATAAAGTTCATG+AGG | 0.578069 | 4.1:+21336210 | None:intergenic |
| AACCATTACAAACTATGCAT+GGG | 0.584630 | 4.1:-21335013 | MS.gene26341:CDS |
| AGTCGACTGAATTTGTTGGT+TGG | 0.588883 | 4.1:+21334442 | None:intergenic |
| TACCATCTACCAAAACGGTA+TGG | 0.590397 | 4.1:+21334342 | None:intergenic |
| GGCTTGTGATCTATCGACAC+TGG | 0.594889 | 4.1:-21334516 | MS.gene26341:CDS |
| ACTTTGTCCCATCAGAGAAG+AGG | 0.602953 | 4.1:+21336194 | None:intergenic |
| TTGGTAGATGGTAATGATGG+TGG | 0.608724 | 4.1:-21334332 | MS.gene26341:CDS |
| AACTAGAATGTATATTCTGG+AGG | 0.612428 | 4.1:-21335147 | MS.gene26341:CDS |
| TTCCAGCCCCTAGCAAAGAA+GGG | 0.619594 | 4.1:-21335353 | MS.gene26341:CDS |
| GCAAAATTGCTAGAGAACAA+AGG | 0.622012 | 4.1:-21336089 | MS.gene26341:CDS |
| ACCTTGTGCAGACCAAGGCA+AGG | 0.622413 | 4.1:-21334486 | MS.gene26341:CDS |
| CTCTTACCTTGTGCAGACCA+AGG | 0.626902 | 4.1:-21334491 | MS.gene26341:CDS |
| ACGGTATGGTCCAGTATAGG+TGG | 0.630950 | 4.1:+21334356 | None:intergenic |
| TGGTCGCATTGTCCTCCCAA+AGG | 0.635548 | 4.1:-21335791 | MS.gene26341:intron |
| GTAGATGGTAATGATGGTGG+TGG | 0.655874 | 4.1:-21334329 | MS.gene26341:CDS |
| TTCATGAGGTTGATTCATCG+AGG | 0.675142 | 4.1:+21336224 | None:intergenic |
| AAGAAGCCCTCACCTTTGGG+AGG | 0.679981 | 4.1:+21335779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTTTTGTTCTTT+TGG | - | chr4.1:21335050-21335069 | MS.gene26341:intron | 10.0% |
| !!! | TTTTTTATAAATCATAACAA+CGG | + | chr4.1:21334823-21334842 | None:intergenic | 10.0% |
| !!! | TTTTTATAAATCATAACAAC+GGG | + | chr4.1:21334822-21334841 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTGAAGCAAAG+AGG | - | chr4.1:21334377-21334396 | MS.gene26341:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | - | chr4.1:21335340-21335359 | MS.gene26341:CDS | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | - | chr4.1:21335169-21335188 | MS.gene26341:intron | 20.0% |
| !!! | TACAATCATTTTTTTCATCT+GGG | + | chr4.1:21335721-21335740 | None:intergenic | 20.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | + | chr4.1:21336235-21336254 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | - | chr4.1:21336058-21336077 | MS.gene26341:CDS | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | - | chr4.1:21335444-21335463 | MS.gene26341:intron | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | - | chr4.1:21334583-21334602 | MS.gene26341:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | - | chr4.1:21335445-21335464 | MS.gene26341:intron | 25.0% |
| !!! | CTACAATCATTTTTTTCATC+TGG | + | chr4.1:21335722-21335741 | None:intergenic | 25.0% |
| AAACCATTACAAACTATGCA+TGG | - | chr4.1:21335476-21335495 | MS.gene26341:intron | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | + | chr4.1:21335383-21335402 | None:intergenic | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | - | chr4.1:21335477-21335496 | MS.gene26341:intron | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | - | chr4.1:21335343-21335362 | MS.gene26341:CDS | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | - | chr4.1:21335008-21335027 | MS.gene26341:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | + | chr4.1:21335292-21335311 | None:intergenic | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | + | chr4.1:21335783-21335802 | None:intergenic | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | - | chr4.1:21335179-21335198 | MS.gene26341:intron | 30.0% | |
| ATCATTACCATCTACCAAAA+CGG | + | chr4.1:21336156-21336175 | None:intergenic | 30.0% | |
| GGAGTAGTTTGAATTATGAA+AGG | + | chr4.1:21334328-21334347 | None:intergenic | 30.0% | |
| GTATAAACTGGAAATTCCAT+AGG | - | chr4.1:21335303-21335322 | MS.gene26341:CDS | 30.0% | |
| TACCATTAATCCAATACCTA+TGG | + | chr4.1:21335322-21335341 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | + | chr4.1:21336055-21336074 | None:intergenic | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | - | chr4.1:21335099-21335118 | MS.gene26341:intron | 30.0% | |
| TGAGGACGAACTTAAAAATT+TGG | - | chr4.1:21335518-21335537 | MS.gene26341:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | - | chr4.1:21335098-21335117 | MS.gene26341:intron | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | - | chr4.1:21335291-21335310 | MS.gene26341:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | - | chr4.1:21335408-21335427 | MS.gene26341:intron | 30.0% |
| ! | TGTTTCAGTTCTCATGATTT+TGG | - | chr4.1:21335407-21335426 | MS.gene26341:intron | 30.0% |
| !! | TATTGTTTTACAGCTCACAA+TGG | + | chr4.1:21335886-21335905 | None:intergenic | 30.0% |
| !! | TGCAGTATTATTGGTTTCTT+GGG | + | chr4.1:21336111-21336130 | None:intergenic | 30.0% |
| !! | TTCCATAGGTATTGGATTAA+TGG | - | chr4.1:21335317-21335336 | MS.gene26341:CDS | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | + | chr4.1:21336112-21336131 | None:intergenic | 30.0% |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | + | chr4.1:21335515-21335534 | None:intergenic | 30.0% |
| AAAATTCAAATAGAGGGAGG+TGG | - | chr4.1:21335105-21335124 | MS.gene26341:intron | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | + | chr4.1:21334513-21334532 | None:intergenic | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | + | chr4.1:21334512-21334531 | None:intergenic | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | - | chr4.1:21334679-21334698 | MS.gene26341:intron | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | - | chr4.1:21335309-21335328 | MS.gene26341:CDS | 35.0% | |
| ACTTTATTCCTCTTCTCTGA+TGG | - | chr4.1:21334288-21334307 | MS.gene26341:CDS | 35.0% | |
| AGATTATCTAGGCCTTTATG+AGG | - | chr4.1:21335500-21335519 | MS.gene26341:intron | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | - | chr4.1:21334334-21334353 | MS.gene26341:CDS | 35.0% | |
| CTTTATTCCTCTTCTCTGAT+GGG | - | chr4.1:21334289-21334308 | MS.gene26341:CDS | 35.0% | |
| GAAGAGGAATAAAGTTCATG+AGG | + | chr4.1:21334283-21334302 | None:intergenic | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | + | chr4.1:21335777-21335796 | None:intergenic | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | - | chr4.1:21334401-21334420 | MS.gene26341:CDS | 35.0% | |
| TATACCCATTAGAGTTTGGA+AGG | + | chr4.1:21335288-21335307 | None:intergenic | 35.0% | |
| ! | ACCTCCCTCTATTTGAATTT+TGG | + | chr4.1:21335106-21335125 | None:intergenic | 35.0% |
| ! | ATGTATATTCTGGAGGATAC+AGG | - | chr4.1:21335350-21335369 | MS.gene26341:CDS | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | + | chr4.1:21335105-21335124 | None:intergenic | 35.0% |
| !! | AGGGATTGAAGTCATTTTCA+AGG | - | chr4.1:21335156-21335175 | MS.gene26341:CDS | 35.0% |
| !! | GTTTTGGTAGATGGTAATGA+TGG | - | chr4.1:21336155-21336174 | MS.gene26341:CDS | 35.0% |
| !! | TGTGTCACTGTATTTTCGAA+AGG | + | chr4.1:21334973-21334992 | None:intergenic | 35.0% |
| AAAACGGTATGGTCCAGTAT+AGG | + | chr4.1:21336140-21336159 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | + | chr4.1:21335148-21335167 | None:intergenic | 40.0% | |
| AGGTGGCATTGCAGTATTAT+TGG | + | chr4.1:21336120-21336139 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | - | chr4.1:21335102-21335121 | MS.gene26341:intron | 40.0% | |
| CTATGCATGGGAGATTATCT+AGG | - | chr4.1:21335489-21335508 | MS.gene26341:intron | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | + | chr4.1:21335147-21335166 | None:intergenic | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | - | chr4.1:21335953-21335972 | MS.gene26341:intron | 40.0% | |
| GGAAAAAGAACCATCAGACT+TGG | - | chr4.1:21336025-21336044 | MS.gene26341:CDS | 40.0% | |
| TACCATCTACCAAAACGGTA+TGG | + | chr4.1:21336151-21336170 | None:intergenic | 40.0% | |
| TCCTCAACTTGGAGTTGAAA+GGG | - | chr4.1:21334345-21334364 | MS.gene26341:CDS | 40.0% | |
| TCTGGGCTGTAAAAAACATG+TGG | + | chr4.1:21334526-21334545 | None:intergenic | 40.0% | |
| TTACAGTCACCTTTCCATCT+GGG | + | chr4.1:21334543-21334562 | None:intergenic | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | + | chr4.1:21335146-21335165 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | + | chr4.1:21334544-21334563 | None:intergenic | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | + | chr4.1:21336019-21336038 | None:intergenic | 40.0% |
| ! | CTCCCATGCATAGTTTGTAA+TGG | + | chr4.1:21335482-21335501 | None:intergenic | 40.0% |
| ! | TATACTGGACCATACCGTTT+TGG | - | chr4.1:21336139-21336158 | MS.gene26341:CDS | 40.0% |
| ! | TTCATGAGGTTGATTCATCG+AGG | + | chr4.1:21334269-21334288 | None:intergenic | 40.0% |
| ! | TTGGTAGATGGTAATGATGG+TGG | - | chr4.1:21336158-21336177 | MS.gene26341:CDS | 40.0% |
| ! | TTTTTACAGCCCAGATGGAA+AGG | - | chr4.1:21334531-21334550 | MS.gene26341:CDS | 40.0% |
| !! | AGTCGACTGAATTTGTTGGT+TGG | + | chr4.1:21336051-21336070 | None:intergenic | 40.0% |
| !!! | CATGTTTTTTACAGCCCAGA+TGG | - | chr4.1:21334526-21334545 | MS.gene26341:CDS | 40.0% |
| ACTTTGTCCCATCAGAGAAG+AGG | + | chr4.1:21334299-21334318 | None:intergenic | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | + | chr4.1:21334717-21334736 | None:intergenic | 45.0% | |
| CATGAACTCTTCTTTGTGCG+AGG | - | chr4.1:21335928-21335947 | MS.gene26341:intron | 45.0% | |
| CGATGAACAACAAAGCAGCT+TGG | - | chr4.1:21336193-21336212 | MS.gene26341:CDS | 45.0% | |
| CTCCTCAACTTGGAGTTGAA+AGG | - | chr4.1:21334344-21334363 | MS.gene26341:CDS | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | - | chr4.1:21335281-21335300 | MS.gene26341:intron | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | - | chr4.1:21334721-21334740 | MS.gene26341:intron | 45.0% | |
| TACTGCAATGCCACCTATAC+TGG | - | chr4.1:21336124-21336143 | MS.gene26341:CDS | 45.0% | |
| TCCCTTTCAACTCCAAGTTG+AGG | + | chr4.1:21334349-21334368 | None:intergenic | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | - | chr4.1:21335280-21335299 | MS.gene26341:intron | 45.0% | |
| !! | GACCATACCGTTTTGGTAGA+TGG | - | chr4.1:21336146-21336165 | MS.gene26341:CDS | 45.0% |
| !! | GTAGATGGTAATGATGGTGG+TGG | - | chr4.1:21336161-21336180 | MS.gene26341:CDS | 45.0% |
| !! | TTTAATTAATTATATTTATG+TGG | - | chr4.1:21334565-21334584 | MS.gene26341:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | + | chr4.1:21335556-21335575 | None:intergenic | 5.0% |
| ACGGTATGGTCCAGTATAGG+TGG | + | chr4.1:21336137-21336156 | None:intergenic | 50.0% | |
| CATTGTCCTCCCAAAGGTGA+GGG | - | chr4.1:21334705-21334724 | MS.gene26341:intron | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | - | chr4.1:21335999-21336018 | MS.gene26341:CDS | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | + | chr4.1:21334718-21334737 | None:intergenic | 50.0% | |
| GGCTTGTGATCTATCGACAC+TGG | - | chr4.1:21335974-21335993 | MS.gene26341:CDS | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | - | chr4.1:21334720-21334739 | MS.gene26341:intron | 50.0% | |
| TGGTTTCTTGGGCGACTGAT+TGG | + | chr4.1:21336100-21336119 | None:intergenic | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | - | chr4.1:21335137-21335156 | MS.gene26341:intron | 50.0% | |
| ! | TCTGGGAAGTGTGCATTGAC+TGG | + | chr4.1:21335704-21335723 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | + | chr4.1:21336095-21336114 | None:intergenic | 50.0% |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | + | chr4.1:21336038-21336057 | None:intergenic | 50.0% |
| AAGAAGCCCTCACCTTTGGG+AGG | + | chr4.1:21334714-21334733 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | - | chr4.1:21336004-21336023 | MS.gene26341:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | + | chr4.1:21335142-21335161 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | - | chr4.1:21335136-21335155 | MS.gene26341:intron | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | - | chr4.1:21334704-21334723 | MS.gene26341:intron | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | + | chr4.1:21336008-21336027 | None:intergenic | 55.0% | |
| TGGTCGCATTGTCCTCCCAA+AGG | - | chr4.1:21334699-21334718 | MS.gene26341:intron | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | + | chr4.1:21336092-21336111 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 21334253 | 21336259 | 21334253 | ID=MS.gene26341 |
| chr4.1 | mRNA | 21334253 | 21336259 | 21334253 | ID=MS.gene26341.t1;Parent=MS.gene26341 |
| chr4.1 | exon | 21335960 | 21336259 | 21335960 | ID=MS.gene26341.t1.exon1;Parent=MS.gene26341.t1 |
| chr4.1 | CDS | 21335960 | 21336259 | 21335960 | ID=cds.MS.gene26341.t1;Parent=MS.gene26341.t1 |
| chr4.1 | exon | 21335792 | 21335866 | 21335792 | ID=MS.gene26341.t1.exon2;Parent=MS.gene26341.t1 |
| chr4.1 | CDS | 21335792 | 21335866 | 21335792 | ID=cds.MS.gene26341.t1;Parent=MS.gene26341.t1 |
| chr4.1 | exon | 21335297 | 21335394 | 21335297 | ID=MS.gene26341.t1.exon3;Parent=MS.gene26341.t1 |
| chr4.1 | CDS | 21335297 | 21335394 | 21335297 | ID=cds.MS.gene26341.t1;Parent=MS.gene26341.t1 |
| chr4.1 | exon | 21335141 | 21335187 | 21335141 | ID=MS.gene26341.t1.exon4;Parent=MS.gene26341.t1 |
| chr4.1 | CDS | 21335141 | 21335187 | 21335141 | ID=cds.MS.gene26341.t1;Parent=MS.gene26341.t1 |
| chr4.1 | exon | 21334973 | 21335046 | 21334973 | ID=MS.gene26341.t1.exon5;Parent=MS.gene26341.t1 |
| chr4.1 | CDS | 21334973 | 21335046 | 21334973 | ID=cds.MS.gene26341.t1;Parent=MS.gene26341.t1 |
| chr4.1 | exon | 21334253 | 21334555 | 21334253 | ID=MS.gene26341.t1.exon6;Parent=MS.gene26341.t1 |
| chr4.1 | CDS | 21334253 | 21334555 | 21334253 | ID=cds.MS.gene26341.t1;Parent=MS.gene26341.t1 |
| Gene Sequence |
| Protein sequence |
