AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26346

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26346.t1 MTR_4g088580 93.573 389 7 7 1 376 1 384 0.0 717
MS.gene26346.t1 MTR_2g014170 41.689 379 136 17 8 376 6 309 2.20e-49 169
MS.gene26346.t1 MTR_8g068210 62.651 83 31 0 45 127 23 105 3.64e-34 129
MS.gene26346.t1 MTR_8g479350 73.529 68 18 0 49 116 63 130 8.28e-33 125
MS.gene26346.t1 MTR_2g096740 76.562 64 15 0 54 117 62 125 1.12e-32 124
MS.gene26346.t1 MTR_2g096740 76.562 64 15 0 54 117 77 140 1.36e-32 124
MS.gene26346.t1 MTR_4g022370 46.032 126 68 0 47 172 75 200 1.65e-32 125
MS.gene26346.t1 MTR_4g063780 62.222 90 30 1 47 132 68 157 2.04e-32 124
MS.gene26346.t1 MTR_2g093220 83.333 60 10 0 49 108 35 94 2.87e-32 123
MS.gene26346.t1 MTR_4g461080 85.965 57 8 0 50 106 25 81 7.87e-32 121
MS.gene26346.t1 MTR_8g027295 50.847 118 53 2 43 156 13 129 1.12e-31 120
MS.gene26346.t1 MTR_3g091820 71.233 73 16 1 41 108 25 97 1.90e-31 121
MS.gene26346.t1 MTR_8g079060 61.176 85 31 1 41 125 18 100 2.88e-31 119
MS.gene26346.t1 MTR_3g090430 55.882 102 38 2 15 110 7 107 8.26e-31 120
MS.gene26346.t1 MTR_2g013370 66.667 78 19 2 39 110 25 101 4.21e-30 117
MS.gene26346.t1 MTR_2g014060 77.049 61 14 0 45 105 16 76 4.30e-30 118
MS.gene26346.t1 MTR_4g089095 72.973 74 19 1 38 111 34 106 1.63e-29 115
MS.gene26346.t1 MTR_4g089095 80.000 60 11 1 52 111 14 72 1.99e-29 114
MS.gene26346.t1 MTR_5g031440 79.630 54 11 0 51 104 40 93 2.75e-29 116
MS.gene26346.t1 MTR_7g024670 71.875 64 18 0 53 116 76 139 3.00e-29 116
MS.gene26346.t1 MTR_1g056810 79.310 58 12 0 51 108 9 66 3.69e-29 114
MS.gene26346.t1 MTR_1g077600 67.606 71 21 1 40 108 27 97 4.77e-29 114
MS.gene26346.t1 MTR_1g077600 67.606 71 21 1 40 108 27 97 4.91e-29 114
MS.gene26346.t1 MTR_8g015840 78.571 56 12 0 50 105 16 71 9.57e-29 111
MS.gene26346.t1 MTR_3g077750 72.131 61 17 0 44 104 51 111 2.42e-28 113
MS.gene26346.t1 MTR_4g109980 81.132 53 10 0 52 104 38 90 2.47e-28 113
MS.gene26346.t1 MTR_2g059540 84.000 50 8 0 53 102 30 79 1.11e-26 105
MS.gene26346.t1 MTR_3g435480 65.625 64 22 0 44 107 126 189 2.63e-26 109
MS.gene26346.t1 MTR_4g082060 62.121 66 25 0 44 109 112 177 8.39e-26 108
MS.gene26346.t1 MTR_7g086780 63.077 65 24 0 45 109 90 154 1.50e-25 107
MS.gene26346.t1 MTR_7g010950 65.079 63 22 0 45 107 126 188 2.14e-25 107
MS.gene26346.t1 MTR_6g012450 67.213 61 20 0 47 107 129 189 8.56e-25 105
MS.gene26346.t1 MTR_8g044220 45.918 98 43 2 13 108 83 172 9.92e-25 105
MS.gene26346.t1 MTR_2g016030 50.000 94 38 2 44 137 37 121 2.08e-24 98.6
MS.gene26346.t1 MTR_6g027450 45.745 94 41 2 16 109 61 144 2.69e-24 102
MS.gene26346.t1 MTR_6g027460 58.462 65 27 0 45 109 87 151 6.32e-24 102
MS.gene26346.t1 MTR_5g041420 63.333 60 22 0 48 107 132 191 5.26e-23 98.6
MS.gene26346.t1 MTR_5g041530 64.407 59 21 0 49 107 135 193 3.46e-21 94.4
MS.gene26346.t1 MTR_5g041380 67.857 56 18 0 52 107 125 180 5.58e-21 93.6
MS.gene26346.t1 MTR_5g041400 70.370 54 16 0 54 107 119 172 7.84e-21 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26346.t1 AT5G65590 38.400 250 112 9 24 268 17 229 6.56e-37 136
MS.gene26346.t1 AT1G28310 35.455 330 161 13 54 376 27 311 3.03e-35 131
MS.gene26346.t1 AT1G28310 33.938 386 194 15 1 376 1 335 4.58e-35 132
MS.gene26346.t1 AT5G60200 81.967 61 11 0 48 108 49 109 4.88e-34 127
MS.gene26346.t1 AT3G61850 41.818 165 77 4 49 194 57 221 4.93e-33 125
MS.gene26346.t1 AT3G61850 41.818 165 77 4 49 194 57 221 4.93e-33 125
MS.gene26346.t1 AT3G61850 41.818 165 77 4 49 194 69 233 5.07e-33 125
MS.gene26346.t1 AT2G37590 65.753 73 25 0 38 110 73 145 2.72e-32 124
MS.gene26346.t1 AT1G07640 46.825 126 63 1 35 160 2 123 6.41e-32 122
MS.gene26346.t1 AT1G07640 40.000 165 88 3 3 160 19 179 1.18e-31 122
MS.gene26346.t1 AT1G07640 40.000 165 88 3 3 160 27 187 1.32e-31 122
MS.gene26346.t1 AT3G55370 61.176 85 33 0 26 110 48 132 1.62e-31 122
MS.gene26346.t1 AT5G02460 82.759 58 10 0 51 108 92 149 2.13e-31 123
MS.gene26346.t1 AT3G55370 61.176 85 33 0 26 110 48 132 2.66e-31 122
MS.gene26346.t1 AT3G55370 61.176 85 33 0 26 110 93 177 3.03e-31 122
MS.gene26346.t1 AT2G28810 79.310 58 12 0 48 105 71 128 4.07e-31 120
MS.gene26346.t1 AT5G60850 70.667 75 19 1 52 123 49 123 4.51e-31 120
MS.gene26346.t1 AT1G21340 64.557 79 25 1 39 114 20 98 4.55e-31 119
MS.gene26346.t1 AT3G50410 63.218 87 28 3 29 111 1 87 5.11e-31 119
MS.gene26346.t1 AT2G28810 79.310 58 12 0 48 105 88 145 5.79e-31 120
MS.gene26346.t1 AT3G45610 77.586 58 13 0 51 108 37 94 9.97e-31 117
MS.gene26346.t1 AT3G61850 52.778 108 41 2 49 146 57 164 1.27e-30 119
MS.gene26346.t1 AT1G51700 60.215 93 28 3 17 108 4 88 1.53e-30 115
MS.gene26346.t1 AT3G61850 52.778 108 41 2 49 146 69 176 1.60e-30 119
MS.gene26346.t1 AT3G52440 81.818 55 10 0 56 110 27 81 2.08e-29 114
MS.gene26346.t1 AT3G52440 81.818 55 10 0 56 110 46 100 3.16e-29 114
MS.gene26346.t1 AT4G00940 74.603 63 16 0 51 113 65 127 5.14e-29 114
MS.gene26346.t1 AT4G00940 74.603 63 16 0 51 113 65 127 5.14e-29 114
MS.gene26346.t1 AT4G00940 74.603 63 16 0 51 113 65 127 5.14e-29 114
MS.gene26346.t1 AT3G21270 84.906 53 8 0 54 106 29 81 5.24e-29 112
MS.gene26346.t1 AT4G24060 75.000 60 15 0 49 108 48 107 6.83e-29 115
MS.gene26346.t1 AT4G21050 60.000 80 32 0 47 126 17 96 2.10e-28 110
MS.gene26346.t1 AT5G66940 56.977 86 33 2 50 132 28 112 2.39e-28 110
MS.gene26346.t1 AT4G38000 79.310 58 11 1 51 107 38 95 7.61e-28 110
MS.gene26346.t1 AT2G28510 37.931 203 90 5 52 249 46 217 2.22e-27 110
MS.gene26346.t1 AT5G62940 69.355 62 19 0 43 104 62 123 3.59e-27 111
MS.gene26346.t1 AT3G47500 66.667 66 22 0 42 107 98 163 2.64e-26 109
MS.gene26346.t1 AT5G62430 44.860 107 49 2 1 107 11 107 8.44e-26 105
MS.gene26346.t1 AT1G64620 74.545 55 14 0 49 103 44 98 2.51e-25 105
MS.gene26346.t1 AT2G46590 78.431 51 11 0 51 101 65 115 2.94e-25 105
MS.gene26346.t1 AT2G46590 78.431 51 11 0 51 101 77 127 3.79e-25 105
MS.gene26346.t1 AT5G39660 68.852 61 19 0 47 107 131 191 3.83e-25 106
MS.gene26346.t1 AT5G39660 68.852 61 19 0 47 107 131 191 3.83e-25 106
MS.gene26346.t1 AT5G39660 68.852 61 19 0 47 107 131 191 3.83e-25 106
MS.gene26346.t1 AT1G26790 63.934 61 22 0 47 107 104 164 2.27e-24 103
MS.gene26346.t1 AT1G69570 60.294 68 27 0 47 114 125 192 2.41e-24 103
MS.gene26346.t1 AT1G47655 72.549 51 14 0 52 102 27 77 6.33e-24 98.6
MS.gene26346.t1 AT1G29160 48.315 89 44 1 39 125 45 133 1.88e-23 96.3
MS.gene26346.t1 AT2G34140 53.086 81 31 1 27 107 38 111 2.32e-23 95.9
MS.gene26346.t1 AT4G21040 57.143 77 30 2 56 131 27 101 2.97e-23 97.4
MS.gene26346.t1 AT4G21080 65.517 58 19 1 56 112 27 84 3.05e-21 92.0
MS.gene26346.t1 AT4G21030 46.053 76 41 0 56 131 23 98 3.49e-14 70.9

Find 66 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCAATTCTCTTCTTTA+TGG 0.060643 4.1:-21392473 MS.gene26346:CDS
CAGATTCTTCTTCTCTTTAT+TGG 0.115189 4.1:-21391944 MS.gene26346:CDS
AACAGCAACAACAAGCTTTA+AGG 0.128070 4.1:-21392796 MS.gene26346:CDS
TCAAAACCAGATGGAGAATA+TGG 0.176496 4.1:-21391973 MS.gene26346:CDS
CTTCTTCAAGTGGTGGAAAT+AGG 0.186986 4.1:-21392850 MS.gene26346:CDS
GAATTATGACCAATATTATT+AGG 0.234994 4.1:+21391849 None:intergenic
CAGGTGAATGGTCTTGGATT+AGG 0.278693 4.1:-21392347 MS.gene26346:CDS
ACTAGAGTTTCAAGTTCTTC+TGG 0.293306 4.1:-21392395 MS.gene26346:CDS
CATAAAGAAGAGAATTGATA+TGG 0.297144 4.1:+21392474 None:intergenic
AACAACTACAGTTCCATCTT+TGG 0.305663 4.1:-21392257 MS.gene26346:CDS
TCATCATGAGGCTGGGATAA+TGG 0.306350 4.1:-21392084 MS.gene26346:CDS
TGCTGCAGTGTTGTTGTTGT+TGG 0.309230 4.1:+21391908 None:intergenic
GTAAAGCCTGTAAAAGATAT+TGG 0.311115 4.1:-21392697 MS.gene26346:CDS
GATGATTACAGAAATGGATT+TGG 0.345610 4.1:-21392290 MS.gene26346:CDS
CATCATGATGATTACAGAAA+TGG 0.360895 4.1:-21392296 MS.gene26346:CDS
CAACAGGTTTGAGTAGTGTT+TGG 0.362182 4.1:-21391887 MS.gene26346:CDS
TTCTTCAAGTGGTGGAAATA+GGG 0.372187 4.1:-21392849 MS.gene26346:CDS
TTAAGTAGAGAAGCCATAAC+TGG 0.397152 4.1:+21392188 None:intergenic
CAGCCTCAGGTGAATGGTCT+TGG 0.403606 4.1:-21392353 MS.gene26346:CDS
AAGAGAATTGATATGGTTTG+AGG 0.411504 4.1:+21392481 None:intergenic
GATCACCAACCTAATAATAT+TGG 0.414706 4.1:-21391858 MS.gene26346:CDS
CTCATAGAGACCAAAATGTT+TGG 0.415114 4.1:-21393142 None:intergenic
TAGAAGCAATATCAAAACTA+TGG 0.419426 4.1:+21392504 None:intergenic
ATGTTTGAAGAAGAGTGATT+TGG 0.420876 4.1:+21392605 None:intergenic
TAGGTGAAGGACTGCAAAAT+AGG 0.421549 4.1:-21392043 MS.gene26346:CDS
CAAAACCAGATGGAGAATAT+GGG 0.434787 4.1:-21391972 MS.gene26346:CDS
AACAACAACACTGCAGCAAC+AGG 0.445401 4.1:-21391903 MS.gene26346:CDS
AAGTGGTGGAAATAGGGTTA+TGG 0.446908 4.1:-21392843 MS.gene26346:CDS
AGATGATCATAAGGTTTCAA+TGG 0.457556 4.1:-21392873 MS.gene26346:CDS
GGCCTCTACTACTCCAGTTA+TGG 0.463925 4.1:-21392201 MS.gene26346:CDS
GAATTGAACCTTGTTGCAAA+AGG 0.464424 4.1:+21392419 None:intergenic
ACAAACCCATATTCTCCATC+TGG 0.464554 4.1:+21391967 None:intergenic
TATGACCAATATTATTAGGT+TGG 0.469646 4.1:+21391853 None:intergenic
GGATTTGAATTAGCACTAGT+AGG 0.471068 4.1:+21392548 None:intergenic
TTTCTGCAACCACCACCAAC+AGG 0.472277 4.1:+21392647 None:intergenic
CAGCAGCAGCCTCAGGTGAA+TGG 0.476567 4.1:-21392359 MS.gene26346:CDS
ATCCCAGCCTCATGATGAAA+AGG 0.481394 4.1:+21392089 None:intergenic
GCTGCTGGTGGTGGAATGAA+AGG 0.490952 4.1:-21392119 MS.gene26346:CDS
GGCTGAGATAGATGATCATA+AGG 0.493744 4.1:-21392882 MS.gene26346:CDS
CAGGCTTTACAGAAGTGTCT+TGG 0.500398 4.1:+21392710 None:intergenic
TGAAGGACTGCAAAATAGGT+TGG 0.500845 4.1:-21392039 MS.gene26346:CDS
TGTTGTTGTTGTTGAGAAGA+AGG 0.502169 4.1:+21392527 None:intergenic
CTTAGAAACGTTCCTGTTGG+TGG 0.520182 4.1:-21392659 MS.gene26346:CDS
TCATCTTCAGCAGCAGCCTC+AGG 0.526288 4.1:-21392366 MS.gene26346:CDS
AACTGGAGTAGTAGAGGCCA+TGG 0.527816 4.1:+21392205 None:intergenic
AGTAGAAGAAGAACCAAAGA+TGG 0.540629 4.1:+21392244 None:intergenic
CTAGTAGGAGTTGAAGAAGA+AGG 0.548358 4.1:+21392563 None:intergenic
AGTAACAATATGAATGCTAA+TGG 0.560213 4.1:-21392008 MS.gene26346:CDS
TGTAAAAGATATTGGACAAG+AGG 0.561250 4.1:-21392689 MS.gene26346:CDS
TGCAAAATAGGTTGGATCAG+TGG 0.563033 4.1:-21392031 MS.gene26346:CDS
GTTTCAATGGCTTCTTCAAG+TGG 0.563411 4.1:-21392860 MS.gene26346:CDS
AGCCATAACTGGAGTAGTAG+AGG 0.573379 4.1:+21392199 None:intergenic
AGAAACGTTCCTGTTGGTGG+TGG 0.578028 4.1:-21392656 MS.gene26346:CDS
TGTTGAAGAAGCTCTTGACC+TGG 0.579160 4.1:+21392815 None:intergenic
AAAAGATATTGGACAAGAGG+TGG 0.582761 4.1:-21392686 MS.gene26346:CDS
TCAATGGCTTCTTCAAGTGG+TGG 0.584214 4.1:-21392857 MS.gene26346:CDS
TAACTGTGTTGATGAGAAAA+CGG 0.594803 4.1:-21393119 MS.gene26346:CDS
GATTCAAAAGAAGTGAAACT+AGG 0.595250 4.1:-21392062 MS.gene26346:CDS
TTCAACTAATGATAACTCCA+TGG 0.607734 4.1:-21392222 MS.gene26346:CDS
ACACTTAGAAACGTTCCTGT+TGG 0.611337 4.1:-21392662 MS.gene26346:CDS
CACTTGTAACAAATTGACAC+AGG 0.623733 4.1:-21393092 MS.gene26346:intron
AAAGAAGTGAAACTAGGTGA+AGG 0.626336 4.1:-21392056 MS.gene26346:CDS
AACAATATGAATGCTAATGG+TGG 0.654745 4.1:-21392005 MS.gene26346:CDS
GCTGGTGGTGGAATGAAAGG+TGG 0.695906 4.1:-21392116 MS.gene26346:CDS
AATCCAAGACCATTCACCTG+AGG 0.720277 4.1:+21392350 None:intergenic
GTGTTTGATGAATCACAACG+TGG 0.749662 4.1:+21392770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTAGATATTTTTTTAA+TGG + chr4.1:21392037-21392056 None:intergenic 10.0%
!! GAATTATGACCAATATTATT+AGG + chr4.1:21393111-21393130 None:intergenic 20.0%
! AGTAACAATATGAATGCTAA+TGG - chr4.1:21392949-21392968 MS.gene26346:intron 25.0%
! CATAAAGAAGAGAATTGATA+TGG + chr4.1:21392486-21392505 None:intergenic 25.0%
! CATATCAATTCTCTTCTTTA+TGG - chr4.1:21392484-21392503 MS.gene26346:CDS 25.0%
! TAGAAGCAATATCAAAACTA+TGG + chr4.1:21392456-21392475 None:intergenic 25.0%
! TATGACCAATATTATTAGGT+TGG + chr4.1:21393107-21393126 None:intergenic 25.0%
!!! AAATTTTGTTGTTTTCCTCT+TGG - chr4.1:21391944-21391963 MS.gene26346:CDS 25.0%
!!! AAGAAAGAGAAAGTGTTTTA+AGG + chr4.1:21392004-21392023 None:intergenic 25.0%
!!! TTGTTTTTCTTATCCTTTGT+AGG - chr4.1:21392054-21392073 MS.gene26346:CDS 25.0%
AACAATATGAATGCTAATGG+TGG - chr4.1:21392952-21392971 MS.gene26346:intron 30.0%
AAGAGAATTGATATGGTTTG+AGG + chr4.1:21392479-21392498 None:intergenic 30.0%
AGATGATCATAAGGTTTCAA+TGG - chr4.1:21392084-21392103 MS.gene26346:CDS 30.0%
ATGTTTGAAGAAGAGTGATT+TGG + chr4.1:21392355-21392374 None:intergenic 30.0%
CAGATTCTTCTTCTCTTTAT+TGG - chr4.1:21393013-21393032 MS.gene26346:intron 30.0%
CATCATGATGATTACAGAAA+TGG - chr4.1:21392661-21392680 MS.gene26346:CDS 30.0%
GATCACCAACCTAATAATAT+TGG - chr4.1:21393099-21393118 MS.gene26346:CDS 30.0%
GATTCAAAAGAAGTGAAACT+AGG - chr4.1:21392895-21392914 MS.gene26346:intron 30.0%
GGAAAACAACAAAATTTGAG+TGG + chr4.1:21391941-21391960 None:intergenic 30.0%
GTAAAGCCTGTAAAAGATAT+TGG - chr4.1:21392260-21392279 MS.gene26346:CDS 30.0%
TGTAAAAGATATTGGACAAG+AGG - chr4.1:21392268-21392287 MS.gene26346:CDS 30.0%
TTCAACTAATGATAACTCCA+TGG - chr4.1:21392735-21392754 MS.gene26346:CDS 30.0%
! GATGATTACAGAAATGGATT+TGG - chr4.1:21392667-21392686 MS.gene26346:CDS 30.0%
! TAACTGTGTTGATGAGAAAA+CGG - chr4.1:21391838-21391857 MS.gene26346:CDS 30.0%
! TCTTGTCCAATATCTTTTAC+AGG + chr4.1:21392269-21392288 None:intergenic 30.0%
!! TTGGATTAGGTTTTTCATCT+GGG - chr4.1:21392623-21392642 MS.gene26346:CDS 30.0%
!!! AAAGAGAAAGTGTTTTAAGG+TGG + chr4.1:21392001-21392020 None:intergenic 30.0%
AAAAGATATTGGACAAGAGG+TGG - chr4.1:21392271-21392290 MS.gene26346:CDS 35.0%
AAAGAAGTGAAACTAGGTGA+AGG - chr4.1:21392901-21392920 MS.gene26346:intron 35.0%
AACAACTACAGTTCCATCTT+TGG - chr4.1:21392700-21392719 MS.gene26346:CDS 35.0%
AACAGCAACAACAAGCTTTA+AGG - chr4.1:21392161-21392180 MS.gene26346:CDS 35.0%
AATAGGGTTATGGAAAAACC+AGG - chr4.1:21392124-21392143 MS.gene26346:CDS 35.0%
AGTAGAAGAAGAACCAAAGA+TGG + chr4.1:21392716-21392735 None:intergenic 35.0%
CAAAACCAGATGGAGAATAT+GGG - chr4.1:21392985-21393004 MS.gene26346:intron 35.0%
CACTTGTAACAAATTGACAC+AGG - chr4.1:21391865-21391884 MS.gene26346:CDS 35.0%
GAATTGAACCTTGTTGCAAA+AGG + chr4.1:21392541-21392560 None:intergenic 35.0%
GGATTTGAATTAGCACTAGT+AGG + chr4.1:21392412-21392431 None:intergenic 35.0%
TCAAAACCAGATGGAGAATA+TGG - chr4.1:21392984-21393003 MS.gene26346:intron 35.0%
TTAAGTAGAGAAGCCATAAC+TGG + chr4.1:21392772-21392791 None:intergenic 35.0%
TTTCCTCTTGGAACAGAATA+TGG - chr4.1:21391956-21391975 MS.gene26346:CDS 35.0%
! TGAACTTTCCTTTTGCAACA+AGG - chr4.1:21392530-21392549 MS.gene26346:CDS 35.0%
! TGTTGTTGTTGTTGAGAAGA+AGG + chr4.1:21392433-21392452 None:intergenic 35.0%
! TTCTTCAAGTGGTGGAAATA+GGG - chr4.1:21392108-21392127 MS.gene26346:CDS 35.0%
!! ACTAGAGTTTCAAGTTCTTC+TGG - chr4.1:21392562-21392581 MS.gene26346:CDS 35.0%
!! CTTGGATTAGGTTTTTCATC+TGG - chr4.1:21392622-21392641 MS.gene26346:CDS 35.0%
!! TGGATTAGGTTTTTCATCTG+GGG - chr4.1:21392624-21392643 MS.gene26346:CDS 35.0%
!!! TGTTGCTTTTCAAAACCAGA+TGG - chr4.1:21392975-21392994 MS.gene26346:intron 35.0%
ACAAACCCATATTCTCCATC+TGG + chr4.1:21392993-21393012 None:intergenic 40.0%
ACACTTAGAAACGTTCCTGT+TGG - chr4.1:21392295-21392314 MS.gene26346:CDS 40.0%
CAACAGGTTTGAGTAGTGTT+TGG - chr4.1:21393070-21393089 MS.gene26346:intron 40.0%
CTAGTAGGAGTTGAAGAAGA+AGG + chr4.1:21392397-21392416 None:intergenic 40.0%
GATAGAGAAAGAGAGTGAGA+TGG + chr4.1:21391893-21391912 None:intergenic 40.0%
GGCTGAGATAGATGATCATA+AGG - chr4.1:21392075-21392094 MS.gene26346:CDS 40.0%
GTGTTTGATGAATCACAACG+TGG + chr4.1:21392190-21392209 None:intergenic 40.0%
GTTTCAATGGCTTCTTCAAG+TGG - chr4.1:21392097-21392116 MS.gene26346:CDS 40.0%
TAGGTGAAGGACTGCAAAAT+AGG - chr4.1:21392914-21392933 MS.gene26346:intron 40.0%
TCATCTATCTCAGCCTACAA+AGG + chr4.1:21392070-21392089 None:intergenic 40.0%
TGAAGGACTGCAAAATAGGT+TGG - chr4.1:21392918-21392937 MS.gene26346:intron 40.0%
! AAGTGGTGGAAATAGGGTTA+TGG - chr4.1:21392114-21392133 MS.gene26346:CDS 40.0%
! ATCCTTTTCATCATGAGGCT+GGG - chr4.1:21392866-21392885 MS.gene26346:CDS 40.0%
! CTTCTTCAAGTGGTGGAAAT+AGG - chr4.1:21392107-21392126 MS.gene26346:CDS 40.0%
! TGCAAAATAGGTTGGATCAG+TGG - chr4.1:21392926-21392945 MS.gene26346:intron 40.0%
! TGGTGATCCTTTTCATCATG+AGG - chr4.1:21392861-21392880 MS.gene26346:CDS 40.0%
AACAACAACACTGCAGCAAC+AGG - chr4.1:21393054-21393073 MS.gene26346:intron 45.0%
AATCCAAGACCATTCACCTG+AGG + chr4.1:21392610-21392629 None:intergenic 45.0%
AGCCATAACTGGAGTAGTAG+AGG + chr4.1:21392761-21392780 None:intergenic 45.0%
ATCCCAGCCTCATGATGAAA+AGG + chr4.1:21392871-21392890 None:intergenic 45.0%
CTTAGAAACGTTCCTGTTGG+TGG - chr4.1:21392298-21392317 MS.gene26346:CDS 45.0%
TCAATGGCTTCTTCAAGTGG+TGG - chr4.1:21392100-21392119 MS.gene26346:CDS 45.0%
TCATCATGAGGCTGGGATAA+TGG - chr4.1:21392873-21392892 MS.gene26346:CDS 45.0%
TGGCCATATTCTGTTCCAAG+AGG + chr4.1:21391962-21391981 None:intergenic 45.0%
TGTTGAAGAAGCTCTTGACC+TGG + chr4.1:21392145-21392164 None:intergenic 45.0%
! CAGGTGAATGGTCTTGGATT+AGG - chr4.1:21392610-21392629 MS.gene26346:CDS 45.0%
! GATCCTTTTCATCATGAGGC+TGG - chr4.1:21392865-21392884 MS.gene26346:CDS 45.0%
! TGCTGCAGTGTTGTTGTTGT+TGG + chr4.1:21393052-21393071 None:intergenic 45.0%
!! CAGGCTTTACAGAAGTGTCT+TGG + chr4.1:21392250-21392269 None:intergenic 45.0%
!!! GTGGTGCATGTTTTAGTCAG+TGG + chr4.1:21391982-21392001 None:intergenic 45.0%
AACTGGAGTAGTAGAGGCCA+TGG + chr4.1:21392755-21392774 None:intergenic 50.0%
GGCCTCTACTACTCCAGTTA+TGG - chr4.1:21392756-21392775 MS.gene26346:CDS 50.0%
TTTCTGCAACCACCACCAAC+AGG + chr4.1:21392313-21392332 None:intergenic 50.0%
! AGAAACGTTCCTGTTGGTGG+TGG - chr4.1:21392301-21392320 MS.gene26346:CDS 50.0%
CAGCCTCAGGTGAATGGTCT+TGG - chr4.1:21392604-21392623 MS.gene26346:CDS 55.0%
TCATCTTCAGCAGCAGCCTC+AGG - chr4.1:21392591-21392610 MS.gene26346:CDS 55.0%
!! GCTGCTGGTGGTGGAATGAA+AGG - chr4.1:21392838-21392857 MS.gene26346:CDS 55.0%
!! GCTGGTGGTGGAATGAAAGG+TGG - chr4.1:21392841-21392860 MS.gene26346:CDS 55.0%
CAGCAGCAGCCTCAGGTGAA+TGG - chr4.1:21392598-21392617 MS.gene26346:CDS 60.0%
ACAGCTGCTGCTGCTGCTGC+TGG - chr4.1:21392823-21392842 MS.gene26346:CDS 65.0%
GCTGCTGCTGCTGCTGCTGG+TGG - chr4.1:21392826-21392845 MS.gene26346:CDS 70.0%
GCTGCTGCTGCTGCTGGTGG+TGG - chr4.1:21392829-21392848 MS.gene26346:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 21391830 21393149 21391830 ID=MS.gene26346
chr4.1 mRNA 21391830 21393149 21391830 ID=MS.gene26346.t1;Parent=MS.gene26346
chr4.1 exon 21393093 21393149 21393093 ID=MS.gene26346.t1.exon1;Parent=MS.gene26346.t1
chr4.1 CDS 21393093 21393149 21393093 ID=cds.MS.gene26346.t1;Parent=MS.gene26346.t1
chr4.1 exon 21391830 21392903 21391830 ID=MS.gene26346.t1.exon2;Parent=MS.gene26346.t1
chr4.1 CDS 21391830 21392903 21391830 ID=cds.MS.gene26346.t1;Parent=MS.gene26346.t1
Gene Sequence

>MS.gene26346

ATGTTTGGTAACTGTGTTGATGAGAAAACGGTAATCACTTGTAACAAATTGACACAGGTTCCATCTCACTCTCTTTCTCTATCTCAATTATTAGACAAAAATACATGACCACTCAAATTTTGTTGTTTTCCTCTTGGAACAGAATATGGCCACTGACTAAAACATGCACCACCTTAAAACACTTTCTCTTTCTTCTTCTTTTTTCCATTAAAAAAATATCTAATTTGTTTTTCTTATCCTTTGTAGGCTGAGATAGATGATCATAAGGTTTCAATGGCTTCTTCAAGTGGTGGAAATAGGGTTATGGAAAAACCAGGTCAAGAGCTTCTTCAACAGCAACAACAAGCTTTAAGGTGTCCACGTTGTGATTCATCAAACACTAAATTCTGTTACTACAATAACTACAGTTTATCACAACCAAGACACTTCTGTAAAGCCTGTAAAAGATATTGGACAAGAGGTGGAACACTTAGAAACGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTCTTAAACGACCAAATCACTCTTCTTCAAACATTGATACTGCTACTGCTTCTCCTTCTTCTTCAACTCCTACTAGTGCTAATTCAAATCCTTCTTCTCAACAACAACAACACCATAGTTTTGATATTGCTTCTACCTCAAACCATATCAATTCTCTTCTTTATGGTAACTCTTCTTGTCATGATGTGATGAACTTTCCTTTTGCAACAAGGTTCAATTCTACTAGAGTTTCAAGTTCTTCTGGTTATGATCATCTTCAGCAGCAGCCTCAGGTGAATGGTCTTGGATTAGGTTTTTCATCTGGGGTAGTTAATCTTAATCATCATGATGATTACAGAAATGGATTTGGTTCAAATAATAACAACTACAGTTCCATCTTTGGTTCTTCTTCTACTTCAACTAATGATAACTCCATGGCCTCTACTACTCCAGTTATGGCTTCTCTACTTAACTCTACACTACTGCAACAGAAATTCATGAGTACAGCTGCTGCTGCTGCTGCTGGTGGTGGAATGAAAGGTGGTGATCCTTTTCATCATGAGGCTGGGATAATGGATTCAAAAGAAGTGAAACTAGGTGAAGGACTGCAAAATAGGTTGGATCAGTGGAGTAACAATATGAATGCTAATGGTGGTGTTGCTTTTCAAAACCAGATGGAGAATATGGGTTTGTCAGATTCTTCTTCTCTTTATTGGAATAACAACAACACCAACAACAACAACACTGCAGCAACAGGTTTGAGTAGTGTTTGGAGTATTGATCACCAACCTAATAATATTGGTCATAATTCAGTTACTTCTCTGATCTAG
Protein sequence

>MS.gene26346.t1

MFGNCVDEKTVITCNKLTQAEIDDHKVSMASSSGGNRVMEKPGQELLQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPNHSSSNIDTATASPSSSTPTSANSNPSSQQQQHHSFDIASTSNHINSLLYGNSSCHDVMNFPFATRFNSTRVSSSSGYDHLQQQPQVNGLGLGFSSGVVNLNHHDDYRNGFGSNNNNYSSIFGSSSTSTNDNSMASTTPVMASLLNSTLLQQKFMSTAAAAAAGGGMKGGDPFHHEAGIMDSKEVKLGEGLQNRLDQWSNNMNANGGVAFQNQMENMGLSDSSSLYWNNNNTNNNNTAATGLSSVWSIDHQPNNIGHNSVTSLI