AlfalfaGEDB | MS.gene26388

M. sativa cultivar XinJiangDaYe / MS.gene26388

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26388.t1	KAE8686544.1	87.3	63	8	0	1	63	414	476	5.00E-17	96.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26388.t1	O22873	71.2	66	19	0	1	66	136	201	1.8e-15	82.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26388.t1	A0A061E6E3	84.4	64	10	0	1	64	419	482	8.0e-17	95.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene26388.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26388.t1	MTR_4g072090	85.714	63	9	1	63	348	410	2.04e-29	108
MS.gene26388.t1	MTR_4g072090	85.714	63	9	1	63	348	410	9.95e-29	106
MS.gene26388.t1	MTR_2g099050	72.727	66	18	1	66	209	274	5.18e-25	95.9
MS.gene26388.t1	MTR_6g034945	71.212	66	19	1	66	139	204	2.88e-23	89.7
MS.gene26388.t1	MTR_5g075390	72.727	66	18	1	66	147	212	5.38e-23	89.7
MS.gene26388.t1	MTR_3g467120	72.727	66	18	1	66	165	230	3.11e-22	87.8
MS.gene26388.t1	MTR_3g094020	65.152	66	23	1	66	96	161	4.81e-21	84.0
MS.gene26388.t1	MTR_1g023690	76.562	64	15	1	64	375	438	8.53e-17	73.2
MS.gene26388.t1	MTR_0405s0060	77.273	44	10	1	44	112	155	8.20e-15	66.2
MS.gene26388.t1	MTR_2g090900	57.692	52	22	11	62	189	240	5.73e-12	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26388.t1	AT4G38900	79.365	63	13	0	1	63	382	444	4.31e-27	102
MS.gene26388.t1	AT4G38900	79.365	63	13	0	1	63	382	444	4.31e-27	102
MS.gene26388.t1	AT1G06850	71.642	67	19	0	1	67	136	202	1.67e-25	94.4
MS.gene26388.t1	AT4G38900	72.464	69	13	1	1	63	382	450	8.38e-25	95.9
MS.gene26388.t1	AT2G21230	78.689	61	13	0	3	63	360	420	2.92e-24	94.0
MS.gene26388.t1	AT2G21230	78.689	61	13	0	3	63	360	420	3.54e-23	91.3
MS.gene26388.t1	AT2G21230	78.689	61	13	0	3	63	360	420	3.95e-23	91.3
MS.gene26388.t1	AT2G21230	78.689	61	13	0	3	63	360	420	3.95e-23	91.3
MS.gene26388.t1	AT2G31370	72.727	66	18	0	1	66	189	254	7.51e-23	89.7
MS.gene26388.t1	AT2G40620	71.212	66	19	0	1	66	136	201	1.11e-22	89.0

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Find 11 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTTGTGCAGAAAGTGTAG+TGG	0.665732	4.4:-24688499	None:intergenic
ACAACTTACTTTGTTGCAGG+TGG	0.538284	4.4:+24688515	MS.gene26388:CDS
CAACTTACTTTGTTGCAGGT+GGG	0.580671	4.4:+24688516	MS.gene26388:CDS
CAGCACCTCTTAGCCCGCTT+CGG	0.449837	4.4:-24688296	None:intergenic
CTGATCCGAAGCGGGCTAAG+AGG	0.529672	4.4:+24688291	MS.gene26388:CDS
GAAAGTTGCTGAGATTGTTA+TGG	0.484882	4.4:+24688268	MS.gene26388:CDS
GCGCAAGATGCAATACATTT+TGG	0.258422	4.4:+24688440	MS.gene26388:CDS
TGCACAACTTACTTTGTTGC+AGG	0.290633	4.4:+24688512	MS.gene26388:CDS
TGTTATGGCTGATCCGAAGC+GGG	0.561676	4.4:+24688283	MS.gene26388:CDS
TTCAAATAATCCTCAAAACA+TGG	0.555818	4.4:-24688562	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	GTTAGTAATGTCAATATGGA+TGG	+	chr4.4:24688342-24688361	MS.gene26388:intron	30.0%
	GAAAGTTGCTGAGATTGTTA+TGG	+	chr4.4:24688268-24688287	MS.gene26388:CDS	35.0%
	ACAACTTACTTTGTTGCAGG+TGG	+	chr4.4:24688515-24688534	MS.gene26388:CDS	40.0%
	CAACTTACTTTGTTGCAGGT+GGG	+	chr4.4:24688516-24688535	MS.gene26388:CDS	40.0%
	TGCACAACTTACTTTGTTGC+AGG	+	chr4.4:24688512-24688531	MS.gene26388:CDS	40.0%
	TTGTTATGGCTGATCCGAAG+CGG	+	chr4.4:24688282-24688301	MS.gene26388:CDS	45.0%
	TGTTATGGCTGATCCGAAGC+GGG	+	chr4.4:24688283-24688302	MS.gene26388:CDS	50.0%
	CAGCACCTCTTAGCCCGCTT+CGG	-	chr4.4:24688299-24688318	None:intergenic	60.0%
!	TATGGATGGTTAATTTGACT+TGG	+	chr4.4:24688356-24688375	MS.gene26388:intron	30.0%
!	AAGTTGTGCAGAAAGTGTAG+TGG	-	chr4.4:24688502-24688521	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	24688257	24688572	24688257	ID=MS.gene26388
chr4.4	mRNA	24688257	24688572	24688257	ID=MS.gene26388.t1;Parent=MS.gene26388
chr4.4	exon	24688257	24688312	24688257	ID=MS.gene26388.t1.exon1;Parent=MS.gene26388.t1
chr4.4	CDS	24688257	24688312	24688257	ID=cds.MS.gene26388.t1;Parent=MS.gene26388.t1
chr4.4	exon	24688401	24688572	24688401	ID=MS.gene26388.t1.exon2;Parent=MS.gene26388.t1
chr4.4	CDS	24688401	24688572	24688401	ID=cds.MS.gene26388.t1;Parent=MS.gene26388.t1

Gene Sequence	>MS.gene26388 ATGGTTAATGAGAAAGTTGCTGAGATTGTTATGGCTGATCCGAAGCGGGCTAAGAGGTGCTGTAATTAACTTATTCAACGTTTTAGTTAGTAATGTCAATATGGATGGTTAATTTGACTTGGATATTTTTTTGGGTTATTTCAGGATTTTGAGAAACAGGCAATCGGCTGCGCGTTTCAATGAGCGCAAGATGCAATACATTTTGGAGCTAGAACAGAAGGTTCAGACTCTGCAGACTGAAGCCACTACACTTTCTGCACAACTTACTTTGTTGCAGGTGGGAACATTTATTTATGTTTGTGAAACCATGTTTTGA
Protein sequence	>MS.gene26388.t1 MVNEKVAEIVMADPKRAKRILRNRQSAARFNERKMQYILELEQKVQTLQTEATTLSAQLTLLQVGTFIYVCETMF