Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26412.t1 | KEH30946.1 | 71.3 | 387 | 89 | 5 | 1 | 380 | 1 | 372 | 2.80E-135 | 491.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26412.t1 | Q6X7J4 | 34.0 | 382 | 217 | 10 | 9 | 380 | 21 | 377 | 1.1e-23 | 112.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26412.t1 | A0A072UNJ4 | 71.3 | 387 | 89 | 5 | 1 | 380 | 1 | 372 | 2.0e-135 | 491.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene26412.t1 | TF | HB-WOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26412.t1 | MTR_4g088070 | 72.351 | 387 | 85 | 6 | 1 | 380 | 1 | 372 | 1.60e-179 | 505 |
MS.gene26412.t1 | MTR_4g088080 | 84.639 | 319 | 41 | 4 | 1 | 314 | 1 | 316 | 4.04e-178 | 498 |
MS.gene26412.t1 | MTR_7g025010 | 57.729 | 414 | 138 | 9 | 4 | 386 | 3 | 410 | 2.50e-143 | 420 |
MS.gene26412.t1 | MTR_2g015000 | 36.818 | 440 | 183 | 16 | 1 | 380 | 1 | 405 | 1.23e-58 | 197 |
MS.gene26412.t1 | MTR_3g462480 | 69.118 | 68 | 21 | 0 | 313 | 380 | 22 | 89 | 2.91e-26 | 101 |
MS.gene26412.t1 | MTR_4g088065 | 50.505 | 99 | 47 | 2 | 52 | 148 | 134 | 232 | 5.75e-20 | 88.6 |
MS.gene26412.t1 | MTR_6g027390 | 60.000 | 60 | 24 | 0 | 35 | 94 | 24 | 83 | 1.73e-19 | 88.6 |
MS.gene26412.t1 | MTR_7g086940 | 55.714 | 70 | 28 | 1 | 23 | 92 | 11 | 77 | 1.13e-17 | 82.8 |
MS.gene26412.t1 | MTR_4g084550 | 38.750 | 80 | 49 | 0 | 24 | 103 | 45 | 124 | 1.74e-14 | 71.6 |
MS.gene26412.t1 | MTR_5g081990 | 33.813 | 139 | 71 | 4 | 18 | 138 | 11 | 146 | 2.49e-13 | 68.6 |
MS.gene26412.t1 | MTR_8g107210 | 40.000 | 80 | 44 | 1 | 43 | 122 | 96 | 171 | 2.41e-12 | 68.2 |
MS.gene26412.t1 | MTR_1g019130 | 31.757 | 148 | 85 | 2 | 2 | 143 | 59 | 196 | 1.10e-11 | 64.7 |
MS.gene26412.t1 | MTR_5g021930 | 31.206 | 141 | 68 | 3 | 43 | 154 | 30 | 170 | 1.33e-11 | 65.5 |
MS.gene26412.t1 | MTR_1g115315 | 43.333 | 60 | 34 | 0 | 41 | 100 | 83 | 142 | 1.67e-11 | 64.7 |
MS.gene26412.t1 | MTR_1g115315 | 43.333 | 60 | 34 | 0 | 41 | 100 | 83 | 142 | 1.72e-11 | 64.3 |
MS.gene26412.t1 | MTR_0777s0020 | 56.364 | 55 | 23 | 1 | 76 | 129 | 50 | 104 | 7.54e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26412.t1 | AT2G33880 | 55.435 | 92 | 41 | 0 | 9 | 100 | 21 | 112 | 1.20e-28 | 115 |
MS.gene26412.t1 | AT2G33880 | 55.435 | 92 | 41 | 0 | 9 | 100 | 21 | 112 | 1.20e-28 | 115 |
MS.gene26412.t1 | AT5G45980 | 65.152 | 66 | 23 | 0 | 35 | 100 | 47 | 112 | 2.73e-24 | 102 |
MS.gene26412.t1 | AT5G17810 | 62.963 | 54 | 20 | 0 | 41 | 94 | 19 | 72 | 4.57e-18 | 84.0 |
MS.gene26412.t1 | AT5G17810 | 62.963 | 54 | 20 | 0 | 41 | 94 | 19 | 72 | 4.57e-18 | 84.0 |
MS.gene26412.t1 | AT5G17810 | 62.963 | 54 | 20 | 0 | 41 | 94 | 19 | 72 | 4.63e-18 | 84.0 |
MS.gene26412.t1 | AT3G03660 | 61.111 | 54 | 21 | 0 | 41 | 94 | 31 | 84 | 1.09e-17 | 82.8 |
MS.gene26412.t1 | AT3G03660 | 61.111 | 54 | 21 | 0 | 41 | 94 | 31 | 84 | 1.71e-17 | 82.8 |
MS.gene26412.t1 | AT3G03660 | 61.111 | 54 | 21 | 0 | 41 | 94 | 31 | 84 | 2.46e-17 | 82.4 |
MS.gene26412.t1 | AT3G03660 | 61.111 | 54 | 21 | 0 | 41 | 94 | 31 | 84 | 3.62e-17 | 82.0 |
MS.gene26412.t1 | AT2G17950 | 41.975 | 81 | 45 | 2 | 43 | 122 | 38 | 117 | 1.15e-12 | 68.6 |
MS.gene26412.t1 | AT5G05770 | 37.333 | 75 | 42 | 1 | 43 | 112 | 29 | 103 | 9.97e-12 | 62.4 |
MS.gene26412.t1 | AT1G20700 | 45.000 | 60 | 33 | 0 | 41 | 100 | 31 | 90 | 1.16e-11 | 62.8 |
MS.gene26412.t1 | AT3G18010 | 42.623 | 61 | 35 | 0 | 43 | 103 | 76 | 136 | 1.17e-11 | 65.9 |
MS.gene26412.t1 | AT1G20700 | 42.857 | 63 | 36 | 0 | 41 | 103 | 93 | 155 | 2.07e-11 | 63.5 |
MS.gene26412.t1 | AT1G20700 | 42.857 | 63 | 36 | 0 | 41 | 103 | 93 | 155 | 2.26e-11 | 63.2 |
MS.gene26412.t1 | AT4G35550 | 41.270 | 63 | 37 | 0 | 41 | 103 | 97 | 159 | 8.29e-11 | 62.8 |
Find 117 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGACCCACAACTTAATTT+TGG | 0.181827 | 4.1:+22279102 | MS.gene26412:CDS |
TGTTTCCTGTTTCTTGTTAT+AGG | 0.203606 | 4.1:-22278617 | None:intergenic |
CGTGGACAATTAGAAGAATT+TGG | 0.217411 | 4.1:+22278523 | MS.gene26412:CDS |
GGTAGGGATTGACTCATATT+TGG | 0.224718 | 4.1:-22278949 | None:intergenic |
AAGAATTTACGAACGTTAAA+AGG | 0.235477 | 4.1:-22279688 | None:intergenic |
TCATCTTCCTCTAACAATAT+TGG | 0.243443 | 4.1:+22278706 | MS.gene26412:CDS |
GTTTCCTGTTTCTTGTTATA+GGG | 0.246182 | 4.1:-22278616 | None:intergenic |
CCATGGGGCTGATTATTTCC+TGG | 0.287811 | 4.1:+22279792 | MS.gene26412:CDS |
GATAAGTACCACCTTGGTTT+TGG | 0.292529 | 4.1:-22278789 | None:intergenic |
TTTAACGTTCGTAAATTCTT+TGG | 0.298436 | 4.1:+22279691 | MS.gene26412:CDS |
AGAGAGATTGCAGGTGAATT+AGG | 0.299501 | 4.1:-22278763 | None:intergenic |
CACCGTCCCATCATTAATAT+TGG | 0.306396 | 4.1:-22278734 | None:intergenic |
TGCGGATTTGCTCAGGCTTT+GGG | 0.317008 | 4.1:-22278438 | None:intergenic |
ATGCGGATTTGCTCAGGCTT+TGG | 0.318582 | 4.1:-22278439 | None:intergenic |
TCAGGCTTTGGGATCCATCT+TGG | 0.322557 | 4.1:-22278427 | None:intergenic |
TTTGGGATCCATCTTGGCCT+TGG | 0.327019 | 4.1:-22278421 | None:intergenic |
CTCAAAGCCATCTATAACTC+AGG | 0.355199 | 4.1:+22278463 | MS.gene26412:CDS |
GGAGATTCCAATATTGTTAG+AGG | 0.358018 | 4.1:-22278713 | None:intergenic |
CTTGTTATAGGGTACTTTGT+TGG | 0.367143 | 4.1:-22278605 | None:intergenic |
CGTCATCCCTGAGTTATAGA+TGG | 0.384216 | 4.1:-22278470 | None:intergenic |
TCATTAATATGATTCTCAAC+CGG | 0.390844 | 4.1:-22278868 | None:intergenic |
AGTGGTGGTGTGGTGATTTG+TGG | 0.396224 | 4.1:-22278670 | None:intergenic |
TTTACTGACGATCAATTTCA+AGG | 0.398214 | 4.1:+22279222 | MS.gene26412:CDS |
CCCCACTCATCGGTTAGAAC+CGG | 0.406777 | 4.1:-22279748 | None:intergenic |
AACATCATGACCTATGGAAA+TGG | 0.408768 | 4.1:+22279003 | MS.gene26412:CDS |
ATTTGTGGGAGAGAGCTATC+TGG | 0.415068 | 4.1:-22278655 | None:intergenic |
CCCTCAACTCACTCCACCAT+GGG | 0.416100 | 4.1:+22279776 | MS.gene26412:CDS |
ATGCAGAAGATTCTGATTGT+TGG | 0.417189 | 4.1:-22277795 | None:intergenic |
ATCCATCTTGGCCTTGGTCC+AGG | 0.421536 | 4.1:-22278415 | None:intergenic |
CATTAATATGATTCTCAACC+GGG | 0.432827 | 4.1:-22278867 | None:intergenic |
GGAATCTCCAATATTAATGA+TGG | 0.434654 | 4.1:+22278727 | MS.gene26412:CDS |
AATTAAGTTGTGGGTCTTGT+TGG | 0.440039 | 4.1:-22279098 | None:intergenic |
TTGAGAATGCGGATTTGCTC+AGG | 0.441470 | 4.1:-22278445 | None:intergenic |
GTGGTGGTGTGGTGATTTGT+GGG | 0.445822 | 4.1:-22278669 | None:intergenic |
CCTCACACCCTCACTGGAAC+CGG | 0.457199 | 4.1:+22278811 | MS.gene26412:CDS |
CTGTATTAAGGAGCTGAAGC+TGG | 0.458747 | 4.1:+22280255 | MS.gene26412:intron |
GATGATGAAGAAAGAACTCC+TGG | 0.460723 | 4.1:+22278397 | MS.gene26412:CDS |
ACTTGACTCCTCCGGTGTCC+CGG | 0.468788 | 4.1:+22279729 | MS.gene26412:CDS |
AGTACCCTATAACAAGAAAC+AGG | 0.472976 | 4.1:+22278612 | MS.gene26412:CDS |
TATGATAACATCATGACCTA+TGG | 0.476880 | 4.1:+22278997 | MS.gene26412:CDS |
CCCGGTTCTAACCGATGAGT+GGG | 0.480119 | 4.1:+22279747 | MS.gene26412:CDS |
TTAGAAGAATTTGGACCGAT+TGG | 0.480912 | 4.1:+22278532 | MS.gene26412:CDS |
TTGTCAATGGCCGGAGGGAG+AGG | 0.492827 | 4.1:-22279171 | None:intergenic |
GAAATTGATCGTCAGTAAAG+AGG | 0.493564 | 4.1:-22279218 | None:intergenic |
ATGATTCTCAACCGGGAAAG+AGG | 0.494066 | 4.1:-22278860 | None:intergenic |
ACTTATCCTCACACCCTCAC+TGG | 0.497083 | 4.1:+22278805 | MS.gene26412:CDS |
CTCCTGGACCAAGGCCAAGA+TGG | 0.498721 | 4.1:+22278413 | MS.gene26412:CDS |
GTTCGTAAATTCTTTGGCGA+TGG | 0.502140 | 4.1:+22279697 | MS.gene26412:CDS |
TAGTGCTTAATGACATGATA+AGG | 0.507658 | 4.1:+22278896 | MS.gene26412:CDS |
TGAGAATCATATTAATGAAA+GGG | 0.508209 | 4.1:+22278873 | MS.gene26412:CDS |
CCCCATGGTGGAGTGAGTTG+AGG | 0.511520 | 4.1:-22279777 | None:intergenic |
AGCTGAAGCTGGAACGGCTA+GGG | 0.512827 | 4.1:+22280266 | MS.gene26412:CDS |
ACGATGGTACAGCAAAATGT+AGG | 0.522895 | 4.1:+22279626 | MS.gene26412:CDS |
TAAAGAGGAATGGAACATCA+TGG | 0.526169 | 4.1:-22279203 | None:intergenic |
GGTACATTCAAAGTTAATGC+AGG | 0.526348 | 4.1:+22279664 | MS.gene26412:CDS |
TTGAGAATCATATTAATGAA+AGG | 0.528238 | 4.1:+22278872 | MS.gene26412:CDS |
TGACCAATGTACTTTCTTCG+AGG | 0.532182 | 4.1:-22277738 | None:intergenic |
CCCATGGTGGAGTGAGTTGA+GGG | 0.532190 | 4.1:-22279776 | None:intergenic |
TGAGCAGTTTCCATTTCCAT+AGG | 0.532338 | 4.1:-22279013 | None:intergenic |
GAGAAGTAATTAAACCCCTC+TGG | 0.532494 | 4.1:-22278919 | None:intergenic |
TGACACCAAAATTAAGTTGT+GGG | 0.534770 | 4.1:-22279107 | None:intergenic |
AGAAAGTACATTGGTCAGAC+AGG | 0.539026 | 4.1:+22277744 | MS.gene26412:CDS |
AAAGAGGAATGGAACATCAT+GGG | 0.539927 | 4.1:-22279202 | None:intergenic |
ATGGGGTGCACTATTGTCAA+TGG | 0.543487 | 4.1:-22279184 | None:intergenic |
TTGTAGACCGGTTCCAGTGA+GGG | 0.546990 | 4.1:-22278818 | None:intergenic |
TGATCGTCAGTAAAGAGGAA+TGG | 0.555879 | 4.1:-22279213 | None:intergenic |
TCCCGGTTCTAACCGATGAG+TGG | 0.562878 | 4.1:+22279746 | MS.gene26412:CDS |
CTCCAATATTAATGATGGGA+CGG | 0.566336 | 4.1:+22278732 | MS.gene26412:CDS |
TTAAGGAGCTGAAGCTGGAA+CGG | 0.567945 | 4.1:+22280260 | MS.gene26412:intron |
CCCACTCATCGGTTAGAACC+GGG | 0.569151 | 4.1:-22279747 | None:intergenic |
TATAGATGGCTTTGAGAATG+CGG | 0.572647 | 4.1:-22278456 | None:intergenic |
ATCGGTTAGAACCGGGACAC+CGG | 0.573165 | 4.1:-22279740 | None:intergenic |
ACCCTCAACTCACTCCACCA+TGG | 0.573606 | 4.1:+22279775 | MS.gene26412:CDS |
GAATCTCCAATATTAATGAT+GGG | 0.575519 | 4.1:+22278728 | MS.gene26412:CDS |
CGATGGTACAGCAAAATGTA+GGG | 0.576909 | 4.1:+22279627 | MS.gene26412:CDS |
GCAGTTCTACTTGACTCCTC+CGG | 0.578536 | 4.1:+22279721 | MS.gene26412:CDS |
TTGAAACCAATAAAAGACGC+TGG | 0.582551 | 4.1:-22278560 | None:intergenic |
TGATCTTGCTCCTCTCCCTC+CGG | 0.584114 | 4.1:+22279161 | MS.gene26412:CDS |
CCGGTTCCAGTGAGGGTGTG+AGG | 0.585988 | 4.1:-22278811 | None:intergenic |
CACTATTGTCAATGGCCGGA+GGG | 0.589288 | 4.1:-22279176 | None:intergenic |
GAGCTGAAGCTGGAACGGCT+AGG | 0.596169 | 4.1:+22280265 | MS.gene26412:CDS |
GAGGGTGACACCCCACTCAT+CGG | 0.597239 | 4.1:-22279758 | None:intergenic |
GACCAATGTACTTTCTTCGA+GGG | 0.597684 | 4.1:-22277737 | None:intergenic |
AAGACGCTGGAATCACCAAT+CGG | 0.600408 | 4.1:-22278547 | None:intergenic |
TTATCAAGAGAATATTCAAG+AGG | 0.601533 | 4.1:+22279050 | MS.gene26412:CDS |
GGGTGTAGGTAGTTGTAGAC+CGG | 0.604786 | 4.1:-22278830 | None:intergenic |
AACAATCAGAATCTTCTGCA+TGG | 0.607678 | 4.1:+22277797 | MS.gene26412:CDS |
TCAAAGCCATCTATAACTCA+GGG | 0.608140 | 4.1:+22278464 | MS.gene26412:CDS |
GGTGCACTATTGTCAATGGC+CGG | 0.610163 | 4.1:-22279180 | None:intergenic |
GTGACACCAAAATTAAGTTG+TGG | 0.611199 | 4.1:-22279108 | None:intergenic |
AAAGAGGAAAACGAGGGTGT+AGG | 0.613264 | 4.1:-22278844 | None:intergenic |
TGTAGGGTGATTACTATCAA+CGG | 0.630138 | 4.1:+22279643 | MS.gene26412:CDS |
TGTGAGGATAAGTACCACCT+TGG | 0.631687 | 4.1:-22278795 | None:intergenic |
GCACTATTGTCAATGGCCGG+AGG | 0.634089 | 4.1:-22279177 | None:intergenic |
GGAAATAATCAGCCCCATGG+TGG | 0.634153 | 4.1:-22279789 | None:intergenic |
GTACATTCAAAGTTAATGCA+GGG | 0.634787 | 4.1:+22279665 | MS.gene26412:CDS |
GTTGTAGACCGGTTCCAGTG+AGG | 0.637143 | 4.1:-22278819 | None:intergenic |
ATCTCTCTGAGCCAAAACCA+AGG | 0.639915 | 4.1:+22278778 | MS.gene26412:CDS |
TATTAATGATGGGACGGTGA+TGG | 0.642433 | 4.1:+22278738 | MS.gene26412:CDS |
AAGAAAGAACTCCTGGACCA+AGG | 0.644218 | 4.1:+22278404 | MS.gene26412:CDS |
AAGAGGAATGGAACATCATG+GGG | 0.652109 | 4.1:-22279201 | None:intergenic |
CTCCCTCGAAGAAAGTACAT+TGG | 0.654219 | 4.1:+22277735 | MS.gene26412:CDS |
AGATGAGTTGAGTGGTGGTG+TGG | 0.655150 | 4.1:-22278680 | None:intergenic |
CCAGGAAATAATCAGCCCCA+TGG | 0.655999 | 4.1:-22279792 | None:intergenic |
TAATGACATGATAAGGCCAG+AGG | 0.662717 | 4.1:+22278903 | MS.gene26412:CDS |
GGTTAGAACCGGGACACCGG+AGG | 0.663701 | 4.1:-22279737 | None:intergenic |
TTCTTAATCTCATCTCTACG+TGG | 0.679677 | 4.1:-22278496 | None:intergenic |
AATGACATGATAAGGCCAGA+GGG | 0.681201 | 4.1:+22278904 | MS.gene26412:CDS |
ACCGGGAAAGAGGAAAACGA+GGG | 0.684423 | 4.1:-22278850 | None:intergenic |
CCGGTTCTAACCGATGAGTG+GGG | 0.684812 | 4.1:+22279748 | MS.gene26412:CDS |
AACCGGGAAAGAGGAAAACG+AGG | 0.685255 | 4.1:-22278851 | None:intergenic |
ATGACATGATAAGGCCAGAG+GGG | 0.698753 | 4.1:+22278905 | MS.gene26412:CDS |
GATGATGAAGATGAGTTGAG+TGG | 0.699555 | 4.1:-22278688 | None:intergenic |
CCTCAACTCACTCCACCATG+GGG | 0.702965 | 4.1:+22279777 | MS.gene26412:CDS |
GATGAGATTAAGAAGATACG+TGG | 0.711435 | 4.1:+22278505 | MS.gene26412:CDS |
GATGAAGATGAGTTGAGTGG+TGG | 0.726884 | 4.1:-22278685 | None:intergenic |
TCTCTGAGCCAAAACCAAGG+TGG | 0.727096 | 4.1:+22278781 | MS.gene26412:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATAATTATGGATTTAA+TGG | + | chr4.1:22279989-22280008 | MS.gene26412:intron | 10.0% |
!! | ATTAAATCCATAATTATATA+TGG | - | chr4.1:22279990-22280009 | None:intergenic | 10.0% |
!!! | TTATTTTCCATATATAATTA+TGG | + | chr4.1:22279980-22279999 | MS.gene26412:intron | 10.0% |
!!! | TTCTATAACTAATTTTTTAT+GGG | - | chr4.1:22278260-22278279 | None:intergenic | 10.0% |
!!! | TTTCTATAACTAATTTTTTA+TGG | - | chr4.1:22278261-22278280 | None:intergenic | 10.0% |
!! | ATTATGATTTATATATCTCA+TGG | + | chr4.1:22279504-22279523 | MS.gene26412:intron | 15.0% |
!!! | AAACAAATTATATATCGATT+TGG | + | chr4.1:22277957-22277976 | MS.gene26412:intron | 15.0% |
!!! | AACAAATCTTTTTTATTGAA+TGG | + | chr4.1:22278020-22278039 | MS.gene26412:intron | 15.0% |
!!! | ATCAAAGTTATTTTTTTTGT+TGG | + | chr4.1:22280145-22280164 | MS.gene26412:intron | 15.0% |
!! | ATATAAATCATAATCATACC+CGG | - | chr4.1:22279498-22279517 | None:intergenic | 20.0% |
!! | GAATATTCTCTTGATAAAAA+AGG | - | chr4.1:22279047-22279066 | None:intergenic | 20.0% |
!! | TGAGAATCATATTAATGAAA+GGG | + | chr4.1:22278873-22278892 | MS.gene26412:CDS | 20.0% |
!! | TTCAAATATTCATCCTTAAT+TGG | - | chr4.1:22279298-22279317 | None:intergenic | 20.0% |
!! | TTGAGAATCATATTAATGAA+AGG | + | chr4.1:22278872-22278891 | MS.gene26412:CDS | 20.0% |
!!! | AATAGTTGATGTTTAGATTT+AGG | - | chr4.1:22278137-22278156 | None:intergenic | 20.0% |
!!! | GATATATAATTTGTTTCGAT+TGG | - | chr4.1:22277953-22277972 | None:intergenic | 20.0% |
!!! | TAGTAAAGATCAAATTTGTT+TGG | - | chr4.1:22278050-22278069 | None:intergenic | 20.0% |
! | AAAAAATATTTACACCCACA+AGG | - | chr4.1:22280019-22280038 | None:intergenic | 25.0% |
! | AAAAATTAGAAGGAGTTGTT+TGG | - | chr4.1:22277853-22277872 | None:intergenic | 25.0% |
! | AAAAATTGTTCAAACTAGCT+AGG | - | chr4.1:22279338-22279357 | None:intergenic | 25.0% |
! | AAGAATTTACGAACGTTAAA+AGG | - | chr4.1:22279691-22279710 | None:intergenic | 25.0% |
! | ATCAGAATATTAATACTCCA+TGG | + | chr4.1:22278282-22278301 | MS.gene26412:intron | 25.0% |
! | GAATCTCCAATATTAATGAT+GGG | + | chr4.1:22278728-22278747 | MS.gene26412:CDS | 25.0% |
! | GTGCTAAATAATTCCAATTA+AGG | + | chr4.1:22279282-22279301 | MS.gene26412:intron | 25.0% |
! | TCATTAATATGATTCTCAAC+CGG | - | chr4.1:22278871-22278890 | None:intergenic | 25.0% |
! | TTATCAAGAGAATATTCAAG+AGG | + | chr4.1:22279050-22279069 | MS.gene26412:CDS | 25.0% |
! | TTATTTCGAAAATCACGTAT+AGG | + | chr4.1:22280076-22280095 | MS.gene26412:intron | 25.0% |
! | TTGCTTGACAATGTAAATTT+AGG | + | chr4.1:22278184-22278203 | MS.gene26412:intron | 25.0% |
! | TTTAACGTTCGTAAATTCTT+TGG | + | chr4.1:22279691-22279710 | MS.gene26412:CDS | 25.0% |
! | TTTACATTGTCAAGCAAATA+TGG | - | chr4.1:22278181-22278200 | None:intergenic | 25.0% |
!! | AACTATTTGATCTTTTCCAA+TGG | + | chr4.1:22278150-22278169 | MS.gene26412:intron | 25.0% |
!!! | ATTTGGTTTTTTTCCTTGTT+GGG | + | chr4.1:22277974-22277993 | MS.gene26412:intron | 25.0% |
!!! | GCTTACGACAAATATTTTTT+AGG | + | chr4.1:22278370-22278389 | MS.gene26412:intron | 25.0% |
!!! | TACGACAAATATTTTTTAGG+TGG | + | chr4.1:22278373-22278392 | MS.gene26412:intron | 25.0% |
!!! | TTTCTTTTTCAGCTGTATTA+AGG | + | chr4.1:22280243-22280262 | MS.gene26412:intron | 25.0% |
ATAAGAAAAAATTGCAGACC+AGG | - | chr4.1:22279813-22279832 | None:intergenic | 30.0% | |
CATTAATATGATTCTCAACC+GGG | - | chr4.1:22278870-22278889 | None:intergenic | 30.0% | |
CTAAACTTTGCATGTTTGAT+TGG | + | chr4.1:22278348-22278367 | MS.gene26412:intron | 30.0% | |
GATTTAATGGTATACCTTGT+GGG | + | chr4.1:22280002-22280021 | MS.gene26412:intron | 30.0% | |
GGAATCTCCAATATTAATGA+TGG | + | chr4.1:22278727-22278746 | MS.gene26412:CDS | 30.0% | |
GTACATTCAAAGTTAATGCA+GGG | + | chr4.1:22279665-22279684 | MS.gene26412:CDS | 30.0% | |
TAGTGCTTAATGACATGATA+AGG | + | chr4.1:22278896-22278915 | MS.gene26412:CDS | 30.0% | |
TATGATAACATCATGACCTA+TGG | + | chr4.1:22278997-22279016 | MS.gene26412:CDS | 30.0% | |
TCATCTTCCTCTAACAATAT+TGG | + | chr4.1:22278706-22278725 | MS.gene26412:CDS | 30.0% | |
TTGCTTGAATGTGTGAATTT+AGG | - | chr4.1:22278231-22278250 | None:intergenic | 30.0% | |
TTTACTGACGATCAATTTCA+AGG | + | chr4.1:22279222-22279241 | MS.gene26412:CDS | 30.0% | |
! | ATCAACATTTTCTTGAGGTA+GGG | - | chr4.1:22278968-22278987 | None:intergenic | 30.0% |
! | GTTTCCTGTTTCTTGTTATA+GGG | - | chr4.1:22278619-22278638 | None:intergenic | 30.0% |
! | TGACACCAAAATTAAGTTGT+GGG | - | chr4.1:22279110-22279129 | None:intergenic | 30.0% |
! | TGTTTCCTGTTTCTTGTTAT+AGG | - | chr4.1:22278620-22278639 | None:intergenic | 30.0% |
!!! | GATTTGGTTTTTTTCCTTGT+TGG | + | chr4.1:22277973-22277992 | MS.gene26412:intron | 30.0% |
!!! | TTTGGTTTTTTTCCTTGTTG+GGG | + | chr4.1:22277975-22277994 | MS.gene26412:intron | 30.0% |
AAACCATTGAAGAGAGAAGA+GGG | - | chr4.1:22277830-22277849 | None:intergenic | 35.0% | |
AAAGAGGAATGGAACATCAT+GGG | - | chr4.1:22279205-22279224 | None:intergenic | 35.0% | |
AACAATCAGAATCTTCTGCA+TGG | + | chr4.1:22277797-22277816 | MS.gene26412:CDS | 35.0% | |
AACATCATGACCTATGGAAA+TGG | + | chr4.1:22279003-22279022 | MS.gene26412:CDS | 35.0% | |
AATTGTTGTGTGTGTTTCTC+AGG | + | chr4.1:22279592-22279611 | MS.gene26412:intron | 35.0% | |
AGTACCCTATAACAAGAAAC+AGG | + | chr4.1:22278612-22278631 | MS.gene26412:CDS | 35.0% | |
ATGCAGAAGATTCTGATTGT+TGG | - | chr4.1:22277798-22277817 | None:intergenic | 35.0% | |
CGTGGACAATTAGAAGAATT+TGG | + | chr4.1:22278523-22278542 | MS.gene26412:CDS | 35.0% | |
GAAATTGATCGTCAGTAAAG+AGG | - | chr4.1:22279221-22279240 | None:intergenic | 35.0% | |
GATGAGATTAAGAAGATACG+TGG | + | chr4.1:22278505-22278524 | MS.gene26412:CDS | 35.0% | |
GGAGATTCCAATATTGTTAG+AGG | - | chr4.1:22278716-22278735 | None:intergenic | 35.0% | |
GGATTTAATGGTATACCTTG+TGG | + | chr4.1:22280001-22280020 | MS.gene26412:intron | 35.0% | |
GGTACATTCAAAGTTAATGC+AGG | + | chr4.1:22279664-22279683 | MS.gene26412:CDS | 35.0% | |
TAAAGAGGAATGGAACATCA+TGG | - | chr4.1:22279206-22279225 | None:intergenic | 35.0% | |
TCAAAGCCATCTATAACTCA+GGG | + | chr4.1:22278464-22278483 | MS.gene26412:CDS | 35.0% | |
TCATTACACTGTATGAACCA+TGG | - | chr4.1:22278302-22278321 | None:intergenic | 35.0% | |
TGTAGGGTGATTACTATCAA+CGG | + | chr4.1:22279643-22279662 | MS.gene26412:CDS | 35.0% | |
TTAGAAGAATTTGGACCGAT+TGG | + | chr4.1:22278532-22278551 | MS.gene26412:CDS | 35.0% | |
TTCTTAATCTCATCTCTACG+TGG | - | chr4.1:22278499-22278518 | None:intergenic | 35.0% | |
TTGAAACCAATAAAAGACGC+TGG | - | chr4.1:22278563-22278582 | None:intergenic | 35.0% | |
! | AATTAAGTTGTGGGTCTTGT+TGG | - | chr4.1:22279101-22279120 | None:intergenic | 35.0% |
! | AGCAGATCAACATTTTCTTG+AGG | - | chr4.1:22278973-22278992 | None:intergenic | 35.0% |
! | ATACCCGGTGCTTTATATTT+TGG | - | chr4.1:22279483-22279502 | None:intergenic | 35.0% |
! | CAAGACCCACAACTTAATTT+TGG | + | chr4.1:22279102-22279121 | MS.gene26412:CDS | 35.0% |
! | CTCCAATATTAATGATGGGA+CGG | + | chr4.1:22278732-22278751 | MS.gene26412:CDS | 35.0% |
! | CTTGTTATAGGGTACTTTGT+TGG | - | chr4.1:22278608-22278627 | None:intergenic | 35.0% |
! | GATCAACATTTTCTTGAGGT+AGG | - | chr4.1:22278969-22278988 | None:intergenic | 35.0% |
! | GTGACACCAAAATTAAGTTG+TGG | - | chr4.1:22279111-22279130 | None:intergenic | 35.0% |
! | TACCCGGTGCTTTATATTTT+GGG | - | chr4.1:22279482-22279501 | None:intergenic | 35.0% |
!! | TATAGATGGCTTTGAGAATG+CGG | - | chr4.1:22278459-22278478 | None:intergenic | 35.0% |
!!! | TTGGTTTTTTTCCTTGTTGG+GGG | + | chr4.1:22277976-22277995 | MS.gene26412:intron | 35.0% |
AACCATTGAAGAGAGAAGAG+GGG | - | chr4.1:22277829-22277848 | None:intergenic | 40.0% | |
AAGAGGAATGGAACATCATG+GGG | - | chr4.1:22279204-22279223 | None:intergenic | 40.0% | |
AATGACATGATAAGGCCAGA+GGG | + | chr4.1:22278904-22278923 | MS.gene26412:CDS | 40.0% | |
ACGATGGTACAGCAAAATGT+AGG | + | chr4.1:22279626-22279645 | MS.gene26412:CDS | 40.0% | |
AGAGAGATTGCAGGTGAATT+AGG | - | chr4.1:22278766-22278785 | None:intergenic | 40.0% | |
AGCAAATATGGTCAGACCAT+TGG | - | chr4.1:22278169-22278188 | None:intergenic | 40.0% | |
CACCGTCCCATCATTAATAT+TGG | - | chr4.1:22278737-22278756 | None:intergenic | 40.0% | |
CGATGGTACAGCAAAATGTA+GGG | + | chr4.1:22279627-22279646 | MS.gene26412:CDS | 40.0% | |
CTCAAAGCCATCTATAACTC+AGG | + | chr4.1:22278463-22278482 | MS.gene26412:CDS | 40.0% | |
CTCTCTTTCAAAGTGTAGAG+TGG | + | chr4.1:22279939-22279958 | MS.gene26412:intron | 40.0% | |
GAAACCATTGAAGAGAGAAG+AGG | - | chr4.1:22277831-22277850 | None:intergenic | 40.0% | |
GACCAATGTACTTTCTTCGA+GGG | - | chr4.1:22277740-22277759 | None:intergenic | 40.0% | |
GAGAAGTAATTAAACCCCTC+TGG | - | chr4.1:22278922-22278941 | None:intergenic | 40.0% | |
GATGATGAAGAAAGAACTCC+TGG | + | chr4.1:22278397-22278416 | MS.gene26412:CDS | 40.0% | |
GCTAGTCACTTCCTGAAAAA+CGG | + | chr4.1:22279398-22279417 | MS.gene26412:intron | 40.0% | |
GTTCGTAAATTCTTTGGCGA+TGG | + | chr4.1:22279697-22279716 | MS.gene26412:CDS | 40.0% | |
TAATGACATGATAAGGCCAG+AGG | + | chr4.1:22278903-22278922 | MS.gene26412:CDS | 40.0% | |
TGACCAATGTACTTTCTTCG+AGG | - | chr4.1:22277741-22277760 | None:intergenic | 40.0% | |
TGAGCAGTTTCCATTTCCAT+AGG | - | chr4.1:22279016-22279035 | None:intergenic | 40.0% | |
TGATCGTCAGTAAAGAGGAA+TGG | - | chr4.1:22279216-22279235 | None:intergenic | 40.0% | |
! | ACCCGGTGCTTTATATTTTG+GGG | - | chr4.1:22279481-22279500 | None:intergenic | 40.0% |
! | AGAAAGTACATTGGTCAGAC+AGG | + | chr4.1:22277744-22277763 | MS.gene26412:CDS | 40.0% |
! | GATAAGTACCACCTTGGTTT+TGG | - | chr4.1:22278792-22278811 | None:intergenic | 40.0% |
! | GATGATGAAGATGAGTTGAG+TGG | - | chr4.1:22278691-22278710 | None:intergenic | 40.0% |
! | GGTAGGGATTGACTCATATT+TGG | - | chr4.1:22278952-22278971 | None:intergenic | 40.0% |
! | GTGATTCCAGCGTCTTTTAT+TGG | + | chr4.1:22278554-22278573 | MS.gene26412:CDS | 40.0% |
! | TATTAATGATGGGACGGTGA+TGG | + | chr4.1:22278738-22278757 | MS.gene26412:CDS | 40.0% |
! | TGTGTGTGTTTCTCAGGTTT+TGG | + | chr4.1:22279598-22279617 | MS.gene26412:intron | 40.0% |
!! | GTCTAAACCTTCCGTTTTTC+AGG | - | chr4.1:22279412-22279431 | None:intergenic | 40.0% |
!! | TTTTCAGGAAGTGACTAGCT+AGG | - | chr4.1:22279397-22279416 | None:intergenic | 40.0% |
AAGAAAGAACTCCTGGACCA+AGG | + | chr4.1:22278404-22278423 | MS.gene26412:CDS | 45.0% | |
AAGACGCTGGAATCACCAAT+CGG | - | chr4.1:22278550-22278569 | None:intergenic | 45.0% | |
ATCTCTCTGAGCCAAAACCA+AGG | + | chr4.1:22278778-22278797 | MS.gene26412:CDS | 45.0% | |
ATGACATGATAAGGCCAGAG+GGG | + | chr4.1:22278905-22278924 | MS.gene26412:CDS | 45.0% | |
ATGATTCTCAACCGGGAAAG+AGG | - | chr4.1:22278863-22278882 | None:intergenic | 45.0% | |
ATGGGGTGCACTATTGTCAA+TGG | - | chr4.1:22279187-22279206 | None:intergenic | 45.0% | |
ATTTGTGGGAGAGAGCTATC+TGG | - | chr4.1:22278658-22278677 | None:intergenic | 45.0% | |
CCCCCCAAAATATAAAGCAC+CGG | + | chr4.1:22279476-22279495 | MS.gene26412:intron | 45.0% | |
CGTCATCCCTGAGTTATAGA+TGG | - | chr4.1:22278473-22278492 | None:intergenic | 45.0% | |
CGTTTATATGACCCCCAACA+AGG | - | chr4.1:22277990-22278009 | None:intergenic | 45.0% | |
CTGTATTAAGGAGCTGAAGC+TGG | + | chr4.1:22280255-22280274 | MS.gene26412:intron | 45.0% | |
GTCACTTCCTGAAAAACGGA+AGG | + | chr4.1:22279402-22279421 | MS.gene26412:intron | 45.0% | |
TGTGAGGATAAGTACCACCT+TGG | - | chr4.1:22278798-22278817 | None:intergenic | 45.0% | |
TTAAGGAGCTGAAGCTGGAA+CGG | + | chr4.1:22280260-22280279 | MS.gene26412:intron | 45.0% | |
! | AAAGAGGAAAACGAGGGTGT+AGG | - | chr4.1:22278847-22278866 | None:intergenic | 45.0% |
! | CCCCCAAAATATAAAGCACC+GGG | + | chr4.1:22279477-22279496 | MS.gene26412:intron | 45.0% |
! | CTCCCTCGAAGAAAGTACAT+TGG | + | chr4.1:22277735-22277754 | MS.gene26412:CDS | 45.0% |
! | GATGAAGATGAGTTGAGTGG+TGG | - | chr4.1:22278688-22278707 | None:intergenic | 45.0% |
! | TTGAGAATGCGGATTTGCTC+AGG | - | chr4.1:22278448-22278467 | None:intergenic | 45.0% |
!! | CCCGGTGCTTTATATTTTGG+GGG | - | chr4.1:22279480-22279499 | None:intergenic | 45.0% |
!! | CCGGTGCTTTATATTTTGGG+GGG | - | chr4.1:22279479-22279498 | None:intergenic | 45.0% |
!! | GTGTTTCTCAGGTTTTGGTG+AGG | + | chr4.1:22279603-22279622 | MS.gene26412:intron | 45.0% |
!!! | TTTTGGCTCAGAGAGATTGC+AGG | - | chr4.1:22278775-22278794 | None:intergenic | 45.0% |
!! | TAATAATAATAAAAATTAGA+AGG | - | chr4.1:22277863-22277882 | None:intergenic | 5.0% |
AACCGGGAAAGAGGAAAACG+AGG | - | chr4.1:22278854-22278873 | None:intergenic | 50.0% | |
ACCGGGAAAGAGGAAAACGA+GGG | - | chr4.1:22278853-22278872 | None:intergenic | 50.0% | |
ACTTATCCTCACACCCTCAC+TGG | + | chr4.1:22278805-22278824 | MS.gene26412:CDS | 50.0% | |
CACTATTGTCAATGGCCGGA+GGG | - | chr4.1:22279179-22279198 | None:intergenic | 50.0% | |
CCAGGAAATAATCAGCCCCA+TGG | - | chr4.1:22279795-22279814 | None:intergenic | 50.0% | |
CCATGGGGCTGATTATTTCC+TGG | + | chr4.1:22279792-22279811 | MS.gene26412:CDS | 50.0% | |
CTCCCCTCTTCTCTCTTCAA+TGG | + | chr4.1:22277824-22277843 | MS.gene26412:intron | 50.0% | |
GCAGTTCTACTTGACTCCTC+CGG | + | chr4.1:22279721-22279740 | MS.gene26412:CDS | 50.0% | |
GGAAATAATCAGCCCCATGG+TGG | - | chr4.1:22279792-22279811 | None:intergenic | 50.0% | |
GGGTGTAGGTAGTTGTAGAC+CGG | - | chr4.1:22278833-22278852 | None:intergenic | 50.0% | |
GGTGCACTATTGTCAATGGC+CGG | - | chr4.1:22279183-22279202 | None:intergenic | 50.0% | |
TCTCTGAGCCAAAACCAAGG+TGG | + | chr4.1:22278781-22278800 | MS.gene26412:CDS | 50.0% | |
! | ACCCTCGTTTTCCTCTTTCC+CGG | + | chr4.1:22278849-22278868 | MS.gene26412:CDS | 50.0% |
! | AGATGAGTTGAGTGGTGGTG+TGG | - | chr4.1:22278683-22278702 | None:intergenic | 50.0% |
! | AGTGGTGGTGTGGTGATTTG+TGG | - | chr4.1:22278673-22278692 | None:intergenic | 50.0% |
! | ATGCGGATTTGCTCAGGCTT+TGG | - | chr4.1:22278442-22278461 | None:intergenic | 50.0% |
! | GTGGTGGTGTGGTGATTTGT+GGG | - | chr4.1:22278672-22278691 | None:intergenic | 50.0% |
! | TGCGGATTTGCTCAGGCTTT+GGG | - | chr4.1:22278441-22278460 | None:intergenic | 50.0% |
! | TTGTAGACCGGTTCCAGTGA+GGG | - | chr4.1:22278821-22278840 | None:intergenic | 50.0% |
! | TTTGGGATCCATCTTGGCCT+TGG | - | chr4.1:22278424-22278443 | None:intergenic | 50.0% |
!! | TCAGGCTTTGGGATCCATCT+TGG | - | chr4.1:22278430-22278449 | None:intergenic | 50.0% |
!! | TCAGGTTTTGGTGAGGACGA+TGG | + | chr4.1:22279610-22279629 | MS.gene26412:intron | 50.0% |
ACCCTCAACTCACTCCACCA+TGG | + | chr4.1:22279775-22279794 | MS.gene26412:CDS | 55.0% | |
AGCTGAAGCTGGAACGGCTA+GGG | + | chr4.1:22280266-22280285 | MS.gene26412:CDS | 55.0% | |
ATCGGTTAGAACCGGGACAC+CGG | - | chr4.1:22279743-22279762 | None:intergenic | 55.0% | |
CCCTCAACTCACTCCACCAT+GGG | + | chr4.1:22279776-22279795 | MS.gene26412:CDS | 55.0% | |
CCTCAACTCACTCCACCATG+GGG | + | chr4.1:22279777-22279796 | MS.gene26412:CDS | 55.0% | |
GCACTATTGTCAATGGCCGG+AGG | - | chr4.1:22279180-22279199 | None:intergenic | 55.0% | |
TGATCTTGCTCCTCTCCCTC+CGG | + | chr4.1:22279161-22279180 | MS.gene26412:CDS | 55.0% | |
! | CCCACTCATCGGTTAGAACC+GGG | - | chr4.1:22279750-22279769 | None:intergenic | 55.0% |
! | CCCATGGTGGAGTGAGTTGA+GGG | - | chr4.1:22279779-22279798 | None:intergenic | 55.0% |
! | CCCCACTCATCGGTTAGAAC+CGG | - | chr4.1:22279751-22279770 | None:intergenic | 55.0% |
! | CCCGGTTCTAACCGATGAGT+GGG | + | chr4.1:22279747-22279766 | MS.gene26412:CDS | 55.0% |
! | CCGGTTCTAACCGATGAGTG+GGG | + | chr4.1:22279748-22279767 | MS.gene26412:CDS | 55.0% |
! | GTTGTAGACCGGTTCCAGTG+AGG | - | chr4.1:22278822-22278841 | None:intergenic | 55.0% |
! | TCCCGGTTCTAACCGATGAG+TGG | + | chr4.1:22279746-22279765 | MS.gene26412:CDS | 55.0% |
!! | ATCCATCTTGGCCTTGGTCC+AGG | - | chr4.1:22278418-22278437 | None:intergenic | 55.0% |
ACTTGACTCCTCCGGTGTCC+CGG | + | chr4.1:22279729-22279748 | MS.gene26412:CDS | 60.0% | |
CCTCACACCCTCACTGGAAC+CGG | + | chr4.1:22278811-22278830 | MS.gene26412:CDS | 60.0% | |
CTCCTGGACCAAGGCCAAGA+TGG | + | chr4.1:22278413-22278432 | MS.gene26412:CDS | 60.0% | |
GAGCTGAAGCTGGAACGGCT+AGG | + | chr4.1:22280265-22280284 | MS.gene26412:CDS | 60.0% | |
GAGGGTGACACCCCACTCAT+CGG | - | chr4.1:22279761-22279780 | None:intergenic | 60.0% | |
TTGTCAATGGCCGGAGGGAG+AGG | - | chr4.1:22279174-22279193 | None:intergenic | 60.0% | |
! | CCCCATGGTGGAGTGAGTTG+AGG | - | chr4.1:22279780-22279799 | None:intergenic | 60.0% |
GGTTAGAACCGGGACACCGG+AGG | - | chr4.1:22279740-22279759 | None:intergenic | 65.0% | |
! | CCGGTTCCAGTGAGGGTGTG+AGG | - | chr4.1:22278814-22278833 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 22277731 | 22280300 | 22277731 | ID=MS.gene26412 |
chr4.1 | mRNA | 22277731 | 22280300 | 22277731 | ID=MS.gene26412.t1;Parent=MS.gene26412 |
chr4.1 | exon | 22277731 | 22277818 | 22277731 | ID=MS.gene26412.t1.exon1;Parent=MS.gene26412.t1 |
chr4.1 | CDS | 22277731 | 22277818 | 22277731 | ID=cds.MS.gene26412.t1;Parent=MS.gene26412.t1 |
chr4.1 | exon | 22278392 | 22279243 | 22278392 | ID=MS.gene26412.t1.exon2;Parent=MS.gene26412.t1 |
chr4.1 | CDS | 22278392 | 22279243 | 22278392 | ID=cds.MS.gene26412.t1;Parent=MS.gene26412.t1 |
chr4.1 | exon | 22279614 | 22279813 | 22279614 | ID=MS.gene26412.t1.exon3;Parent=MS.gene26412.t1 |
chr4.1 | CDS | 22279614 | 22279813 | 22279614 | ID=cds.MS.gene26412.t1;Parent=MS.gene26412.t1 |
chr4.1 | exon | 22280265 | 22280300 | 22280265 | ID=MS.gene26412.t1.exon4;Parent=MS.gene26412.t1 |
chr4.1 | CDS | 22280265 | 22280300 | 22280265 | ID=cds.MS.gene26412.t1;Parent=MS.gene26412.t1 |
Gene Sequence |
Protein sequence |