AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26412


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26412.t1 MTR_4g088070 72.351 387 85 6 1 380 1 372 1.60e-179 505
MS.gene26412.t1 MTR_4g088080 84.639 319 41 4 1 314 1 316 4.04e-178 498
MS.gene26412.t1 MTR_7g025010 57.729 414 138 9 4 386 3 410 2.50e-143 420
MS.gene26412.t1 MTR_2g015000 36.818 440 183 16 1 380 1 405 1.23e-58 197
MS.gene26412.t1 MTR_3g462480 69.118 68 21 0 313 380 22 89 2.91e-26 101
MS.gene26412.t1 MTR_4g088065 50.505 99 47 2 52 148 134 232 5.75e-20 88.6
MS.gene26412.t1 MTR_6g027390 60.000 60 24 0 35 94 24 83 1.73e-19 88.6
MS.gene26412.t1 MTR_7g086940 55.714 70 28 1 23 92 11 77 1.13e-17 82.8
MS.gene26412.t1 MTR_4g084550 38.750 80 49 0 24 103 45 124 1.74e-14 71.6
MS.gene26412.t1 MTR_5g081990 33.813 139 71 4 18 138 11 146 2.49e-13 68.6
MS.gene26412.t1 MTR_8g107210 40.000 80 44 1 43 122 96 171 2.41e-12 68.2
MS.gene26412.t1 MTR_1g019130 31.757 148 85 2 2 143 59 196 1.10e-11 64.7
MS.gene26412.t1 MTR_5g021930 31.206 141 68 3 43 154 30 170 1.33e-11 65.5
MS.gene26412.t1 MTR_1g115315 43.333 60 34 0 41 100 83 142 1.67e-11 64.7
MS.gene26412.t1 MTR_1g115315 43.333 60 34 0 41 100 83 142 1.72e-11 64.3
MS.gene26412.t1 MTR_0777s0020 56.364 55 23 1 76 129 50 104 7.54e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26412.t1 AT2G33880 55.435 92 41 0 9 100 21 112 1.20e-28 115
MS.gene26412.t1 AT2G33880 55.435 92 41 0 9 100 21 112 1.20e-28 115
MS.gene26412.t1 AT5G45980 65.152 66 23 0 35 100 47 112 2.73e-24 102
MS.gene26412.t1 AT5G17810 62.963 54 20 0 41 94 19 72 4.57e-18 84.0
MS.gene26412.t1 AT5G17810 62.963 54 20 0 41 94 19 72 4.57e-18 84.0
MS.gene26412.t1 AT5G17810 62.963 54 20 0 41 94 19 72 4.63e-18 84.0
MS.gene26412.t1 AT3G03660 61.111 54 21 0 41 94 31 84 1.09e-17 82.8
MS.gene26412.t1 AT3G03660 61.111 54 21 0 41 94 31 84 1.71e-17 82.8
MS.gene26412.t1 AT3G03660 61.111 54 21 0 41 94 31 84 2.46e-17 82.4
MS.gene26412.t1 AT3G03660 61.111 54 21 0 41 94 31 84 3.62e-17 82.0
MS.gene26412.t1 AT2G17950 41.975 81 45 2 43 122 38 117 1.15e-12 68.6
MS.gene26412.t1 AT5G05770 37.333 75 42 1 43 112 29 103 9.97e-12 62.4
MS.gene26412.t1 AT1G20700 45.000 60 33 0 41 100 31 90 1.16e-11 62.8
MS.gene26412.t1 AT3G18010 42.623 61 35 0 43 103 76 136 1.17e-11 65.9
MS.gene26412.t1 AT1G20700 42.857 63 36 0 41 103 93 155 2.07e-11 63.5
MS.gene26412.t1 AT1G20700 42.857 63 36 0 41 103 93 155 2.26e-11 63.2
MS.gene26412.t1 AT4G35550 41.270 63 37 0 41 103 97 159 8.29e-11 62.8

Find 117 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGACCCACAACTTAATTT+TGG 0.181827 4.1:+22279102 MS.gene26412:CDS
TGTTTCCTGTTTCTTGTTAT+AGG 0.203606 4.1:-22278617 None:intergenic
CGTGGACAATTAGAAGAATT+TGG 0.217411 4.1:+22278523 MS.gene26412:CDS
GGTAGGGATTGACTCATATT+TGG 0.224718 4.1:-22278949 None:intergenic
AAGAATTTACGAACGTTAAA+AGG 0.235477 4.1:-22279688 None:intergenic
TCATCTTCCTCTAACAATAT+TGG 0.243443 4.1:+22278706 MS.gene26412:CDS
GTTTCCTGTTTCTTGTTATA+GGG 0.246182 4.1:-22278616 None:intergenic
CCATGGGGCTGATTATTTCC+TGG 0.287811 4.1:+22279792 MS.gene26412:CDS
GATAAGTACCACCTTGGTTT+TGG 0.292529 4.1:-22278789 None:intergenic
TTTAACGTTCGTAAATTCTT+TGG 0.298436 4.1:+22279691 MS.gene26412:CDS
AGAGAGATTGCAGGTGAATT+AGG 0.299501 4.1:-22278763 None:intergenic
CACCGTCCCATCATTAATAT+TGG 0.306396 4.1:-22278734 None:intergenic
TGCGGATTTGCTCAGGCTTT+GGG 0.317008 4.1:-22278438 None:intergenic
ATGCGGATTTGCTCAGGCTT+TGG 0.318582 4.1:-22278439 None:intergenic
TCAGGCTTTGGGATCCATCT+TGG 0.322557 4.1:-22278427 None:intergenic
TTTGGGATCCATCTTGGCCT+TGG 0.327019 4.1:-22278421 None:intergenic
CTCAAAGCCATCTATAACTC+AGG 0.355199 4.1:+22278463 MS.gene26412:CDS
GGAGATTCCAATATTGTTAG+AGG 0.358018 4.1:-22278713 None:intergenic
CTTGTTATAGGGTACTTTGT+TGG 0.367143 4.1:-22278605 None:intergenic
CGTCATCCCTGAGTTATAGA+TGG 0.384216 4.1:-22278470 None:intergenic
TCATTAATATGATTCTCAAC+CGG 0.390844 4.1:-22278868 None:intergenic
AGTGGTGGTGTGGTGATTTG+TGG 0.396224 4.1:-22278670 None:intergenic
TTTACTGACGATCAATTTCA+AGG 0.398214 4.1:+22279222 MS.gene26412:CDS
CCCCACTCATCGGTTAGAAC+CGG 0.406777 4.1:-22279748 None:intergenic
AACATCATGACCTATGGAAA+TGG 0.408768 4.1:+22279003 MS.gene26412:CDS
ATTTGTGGGAGAGAGCTATC+TGG 0.415068 4.1:-22278655 None:intergenic
CCCTCAACTCACTCCACCAT+GGG 0.416100 4.1:+22279776 MS.gene26412:CDS
ATGCAGAAGATTCTGATTGT+TGG 0.417189 4.1:-22277795 None:intergenic
ATCCATCTTGGCCTTGGTCC+AGG 0.421536 4.1:-22278415 None:intergenic
CATTAATATGATTCTCAACC+GGG 0.432827 4.1:-22278867 None:intergenic
GGAATCTCCAATATTAATGA+TGG 0.434654 4.1:+22278727 MS.gene26412:CDS
AATTAAGTTGTGGGTCTTGT+TGG 0.440039 4.1:-22279098 None:intergenic
TTGAGAATGCGGATTTGCTC+AGG 0.441470 4.1:-22278445 None:intergenic
GTGGTGGTGTGGTGATTTGT+GGG 0.445822 4.1:-22278669 None:intergenic
CCTCACACCCTCACTGGAAC+CGG 0.457199 4.1:+22278811 MS.gene26412:CDS
CTGTATTAAGGAGCTGAAGC+TGG 0.458747 4.1:+22280255 MS.gene26412:intron
GATGATGAAGAAAGAACTCC+TGG 0.460723 4.1:+22278397 MS.gene26412:CDS
ACTTGACTCCTCCGGTGTCC+CGG 0.468788 4.1:+22279729 MS.gene26412:CDS
AGTACCCTATAACAAGAAAC+AGG 0.472976 4.1:+22278612 MS.gene26412:CDS
TATGATAACATCATGACCTA+TGG 0.476880 4.1:+22278997 MS.gene26412:CDS
CCCGGTTCTAACCGATGAGT+GGG 0.480119 4.1:+22279747 MS.gene26412:CDS
TTAGAAGAATTTGGACCGAT+TGG 0.480912 4.1:+22278532 MS.gene26412:CDS
TTGTCAATGGCCGGAGGGAG+AGG 0.492827 4.1:-22279171 None:intergenic
GAAATTGATCGTCAGTAAAG+AGG 0.493564 4.1:-22279218 None:intergenic
ATGATTCTCAACCGGGAAAG+AGG 0.494066 4.1:-22278860 None:intergenic
ACTTATCCTCACACCCTCAC+TGG 0.497083 4.1:+22278805 MS.gene26412:CDS
CTCCTGGACCAAGGCCAAGA+TGG 0.498721 4.1:+22278413 MS.gene26412:CDS
GTTCGTAAATTCTTTGGCGA+TGG 0.502140 4.1:+22279697 MS.gene26412:CDS
TAGTGCTTAATGACATGATA+AGG 0.507658 4.1:+22278896 MS.gene26412:CDS
TGAGAATCATATTAATGAAA+GGG 0.508209 4.1:+22278873 MS.gene26412:CDS
CCCCATGGTGGAGTGAGTTG+AGG 0.511520 4.1:-22279777 None:intergenic
AGCTGAAGCTGGAACGGCTA+GGG 0.512827 4.1:+22280266 MS.gene26412:CDS
ACGATGGTACAGCAAAATGT+AGG 0.522895 4.1:+22279626 MS.gene26412:CDS
TAAAGAGGAATGGAACATCA+TGG 0.526169 4.1:-22279203 None:intergenic
GGTACATTCAAAGTTAATGC+AGG 0.526348 4.1:+22279664 MS.gene26412:CDS
TTGAGAATCATATTAATGAA+AGG 0.528238 4.1:+22278872 MS.gene26412:CDS
TGACCAATGTACTTTCTTCG+AGG 0.532182 4.1:-22277738 None:intergenic
CCCATGGTGGAGTGAGTTGA+GGG 0.532190 4.1:-22279776 None:intergenic
TGAGCAGTTTCCATTTCCAT+AGG 0.532338 4.1:-22279013 None:intergenic
GAGAAGTAATTAAACCCCTC+TGG 0.532494 4.1:-22278919 None:intergenic
TGACACCAAAATTAAGTTGT+GGG 0.534770 4.1:-22279107 None:intergenic
AGAAAGTACATTGGTCAGAC+AGG 0.539026 4.1:+22277744 MS.gene26412:CDS
AAAGAGGAATGGAACATCAT+GGG 0.539927 4.1:-22279202 None:intergenic
ATGGGGTGCACTATTGTCAA+TGG 0.543487 4.1:-22279184 None:intergenic
TTGTAGACCGGTTCCAGTGA+GGG 0.546990 4.1:-22278818 None:intergenic
TGATCGTCAGTAAAGAGGAA+TGG 0.555879 4.1:-22279213 None:intergenic
TCCCGGTTCTAACCGATGAG+TGG 0.562878 4.1:+22279746 MS.gene26412:CDS
CTCCAATATTAATGATGGGA+CGG 0.566336 4.1:+22278732 MS.gene26412:CDS
TTAAGGAGCTGAAGCTGGAA+CGG 0.567945 4.1:+22280260 MS.gene26412:intron
CCCACTCATCGGTTAGAACC+GGG 0.569151 4.1:-22279747 None:intergenic
TATAGATGGCTTTGAGAATG+CGG 0.572647 4.1:-22278456 None:intergenic
ATCGGTTAGAACCGGGACAC+CGG 0.573165 4.1:-22279740 None:intergenic
ACCCTCAACTCACTCCACCA+TGG 0.573606 4.1:+22279775 MS.gene26412:CDS
GAATCTCCAATATTAATGAT+GGG 0.575519 4.1:+22278728 MS.gene26412:CDS
CGATGGTACAGCAAAATGTA+GGG 0.576909 4.1:+22279627 MS.gene26412:CDS
GCAGTTCTACTTGACTCCTC+CGG 0.578536 4.1:+22279721 MS.gene26412:CDS
TTGAAACCAATAAAAGACGC+TGG 0.582551 4.1:-22278560 None:intergenic
TGATCTTGCTCCTCTCCCTC+CGG 0.584114 4.1:+22279161 MS.gene26412:CDS
CCGGTTCCAGTGAGGGTGTG+AGG 0.585988 4.1:-22278811 None:intergenic
CACTATTGTCAATGGCCGGA+GGG 0.589288 4.1:-22279176 None:intergenic
GAGCTGAAGCTGGAACGGCT+AGG 0.596169 4.1:+22280265 MS.gene26412:CDS
GAGGGTGACACCCCACTCAT+CGG 0.597239 4.1:-22279758 None:intergenic
GACCAATGTACTTTCTTCGA+GGG 0.597684 4.1:-22277737 None:intergenic
AAGACGCTGGAATCACCAAT+CGG 0.600408 4.1:-22278547 None:intergenic
TTATCAAGAGAATATTCAAG+AGG 0.601533 4.1:+22279050 MS.gene26412:CDS
GGGTGTAGGTAGTTGTAGAC+CGG 0.604786 4.1:-22278830 None:intergenic
AACAATCAGAATCTTCTGCA+TGG 0.607678 4.1:+22277797 MS.gene26412:CDS
TCAAAGCCATCTATAACTCA+GGG 0.608140 4.1:+22278464 MS.gene26412:CDS
GGTGCACTATTGTCAATGGC+CGG 0.610163 4.1:-22279180 None:intergenic
GTGACACCAAAATTAAGTTG+TGG 0.611199 4.1:-22279108 None:intergenic
AAAGAGGAAAACGAGGGTGT+AGG 0.613264 4.1:-22278844 None:intergenic
TGTAGGGTGATTACTATCAA+CGG 0.630138 4.1:+22279643 MS.gene26412:CDS
TGTGAGGATAAGTACCACCT+TGG 0.631687 4.1:-22278795 None:intergenic
GCACTATTGTCAATGGCCGG+AGG 0.634089 4.1:-22279177 None:intergenic
GGAAATAATCAGCCCCATGG+TGG 0.634153 4.1:-22279789 None:intergenic
GTACATTCAAAGTTAATGCA+GGG 0.634787 4.1:+22279665 MS.gene26412:CDS
GTTGTAGACCGGTTCCAGTG+AGG 0.637143 4.1:-22278819 None:intergenic
ATCTCTCTGAGCCAAAACCA+AGG 0.639915 4.1:+22278778 MS.gene26412:CDS
TATTAATGATGGGACGGTGA+TGG 0.642433 4.1:+22278738 MS.gene26412:CDS
AAGAAAGAACTCCTGGACCA+AGG 0.644218 4.1:+22278404 MS.gene26412:CDS
AAGAGGAATGGAACATCATG+GGG 0.652109 4.1:-22279201 None:intergenic
CTCCCTCGAAGAAAGTACAT+TGG 0.654219 4.1:+22277735 MS.gene26412:CDS
AGATGAGTTGAGTGGTGGTG+TGG 0.655150 4.1:-22278680 None:intergenic
CCAGGAAATAATCAGCCCCA+TGG 0.655999 4.1:-22279792 None:intergenic
TAATGACATGATAAGGCCAG+AGG 0.662717 4.1:+22278903 MS.gene26412:CDS
GGTTAGAACCGGGACACCGG+AGG 0.663701 4.1:-22279737 None:intergenic
TTCTTAATCTCATCTCTACG+TGG 0.679677 4.1:-22278496 None:intergenic
AATGACATGATAAGGCCAGA+GGG 0.681201 4.1:+22278904 MS.gene26412:CDS
ACCGGGAAAGAGGAAAACGA+GGG 0.684423 4.1:-22278850 None:intergenic
CCGGTTCTAACCGATGAGTG+GGG 0.684812 4.1:+22279748 MS.gene26412:CDS
AACCGGGAAAGAGGAAAACG+AGG 0.685255 4.1:-22278851 None:intergenic
ATGACATGATAAGGCCAGAG+GGG 0.698753 4.1:+22278905 MS.gene26412:CDS
GATGATGAAGATGAGTTGAG+TGG 0.699555 4.1:-22278688 None:intergenic
CCTCAACTCACTCCACCATG+GGG 0.702965 4.1:+22279777 MS.gene26412:CDS
GATGAGATTAAGAAGATACG+TGG 0.711435 4.1:+22278505 MS.gene26412:CDS
GATGAAGATGAGTTGAGTGG+TGG 0.726884 4.1:-22278685 None:intergenic
TCTCTGAGCCAAAACCAAGG+TGG 0.727096 4.1:+22278781 MS.gene26412:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATTATGGATTTAA+TGG + chr4.1:22279989-22280008 MS.gene26412:intron 10.0%
!! ATTAAATCCATAATTATATA+TGG - chr4.1:22279990-22280009 None:intergenic 10.0%
!!! TTATTTTCCATATATAATTA+TGG + chr4.1:22279980-22279999 MS.gene26412:intron 10.0%
!!! TTCTATAACTAATTTTTTAT+GGG - chr4.1:22278260-22278279 None:intergenic 10.0%
!!! TTTCTATAACTAATTTTTTA+TGG - chr4.1:22278261-22278280 None:intergenic 10.0%
!! ATTATGATTTATATATCTCA+TGG + chr4.1:22279504-22279523 MS.gene26412:intron 15.0%
!!! AAACAAATTATATATCGATT+TGG + chr4.1:22277957-22277976 MS.gene26412:intron 15.0%
!!! AACAAATCTTTTTTATTGAA+TGG + chr4.1:22278020-22278039 MS.gene26412:intron 15.0%
!!! ATCAAAGTTATTTTTTTTGT+TGG + chr4.1:22280145-22280164 MS.gene26412:intron 15.0%
!! ATATAAATCATAATCATACC+CGG - chr4.1:22279498-22279517 None:intergenic 20.0%
!! GAATATTCTCTTGATAAAAA+AGG - chr4.1:22279047-22279066 None:intergenic 20.0%
!! TGAGAATCATATTAATGAAA+GGG + chr4.1:22278873-22278892 MS.gene26412:CDS 20.0%
!! TTCAAATATTCATCCTTAAT+TGG - chr4.1:22279298-22279317 None:intergenic 20.0%
!! TTGAGAATCATATTAATGAA+AGG + chr4.1:22278872-22278891 MS.gene26412:CDS 20.0%
!!! AATAGTTGATGTTTAGATTT+AGG - chr4.1:22278137-22278156 None:intergenic 20.0%
!!! GATATATAATTTGTTTCGAT+TGG - chr4.1:22277953-22277972 None:intergenic 20.0%
!!! TAGTAAAGATCAAATTTGTT+TGG - chr4.1:22278050-22278069 None:intergenic 20.0%
! AAAAAATATTTACACCCACA+AGG - chr4.1:22280019-22280038 None:intergenic 25.0%
! AAAAATTAGAAGGAGTTGTT+TGG - chr4.1:22277853-22277872 None:intergenic 25.0%
! AAAAATTGTTCAAACTAGCT+AGG - chr4.1:22279338-22279357 None:intergenic 25.0%
! AAGAATTTACGAACGTTAAA+AGG - chr4.1:22279691-22279710 None:intergenic 25.0%
! ATCAGAATATTAATACTCCA+TGG + chr4.1:22278282-22278301 MS.gene26412:intron 25.0%
! GAATCTCCAATATTAATGAT+GGG + chr4.1:22278728-22278747 MS.gene26412:CDS 25.0%
! GTGCTAAATAATTCCAATTA+AGG + chr4.1:22279282-22279301 MS.gene26412:intron 25.0%
! TCATTAATATGATTCTCAAC+CGG - chr4.1:22278871-22278890 None:intergenic 25.0%
! TTATCAAGAGAATATTCAAG+AGG + chr4.1:22279050-22279069 MS.gene26412:CDS 25.0%
! TTATTTCGAAAATCACGTAT+AGG + chr4.1:22280076-22280095 MS.gene26412:intron 25.0%
! TTGCTTGACAATGTAAATTT+AGG + chr4.1:22278184-22278203 MS.gene26412:intron 25.0%
! TTTAACGTTCGTAAATTCTT+TGG + chr4.1:22279691-22279710 MS.gene26412:CDS 25.0%
! TTTACATTGTCAAGCAAATA+TGG - chr4.1:22278181-22278200 None:intergenic 25.0%
!! AACTATTTGATCTTTTCCAA+TGG + chr4.1:22278150-22278169 MS.gene26412:intron 25.0%
!!! ATTTGGTTTTTTTCCTTGTT+GGG + chr4.1:22277974-22277993 MS.gene26412:intron 25.0%
!!! GCTTACGACAAATATTTTTT+AGG + chr4.1:22278370-22278389 MS.gene26412:intron 25.0%
!!! TACGACAAATATTTTTTAGG+TGG + chr4.1:22278373-22278392 MS.gene26412:intron 25.0%
!!! TTTCTTTTTCAGCTGTATTA+AGG + chr4.1:22280243-22280262 MS.gene26412:intron 25.0%
ATAAGAAAAAATTGCAGACC+AGG - chr4.1:22279813-22279832 None:intergenic 30.0%
CATTAATATGATTCTCAACC+GGG - chr4.1:22278870-22278889 None:intergenic 30.0%
CTAAACTTTGCATGTTTGAT+TGG + chr4.1:22278348-22278367 MS.gene26412:intron 30.0%
GATTTAATGGTATACCTTGT+GGG + chr4.1:22280002-22280021 MS.gene26412:intron 30.0%
GGAATCTCCAATATTAATGA+TGG + chr4.1:22278727-22278746 MS.gene26412:CDS 30.0%
GTACATTCAAAGTTAATGCA+GGG + chr4.1:22279665-22279684 MS.gene26412:CDS 30.0%
TAGTGCTTAATGACATGATA+AGG + chr4.1:22278896-22278915 MS.gene26412:CDS 30.0%
TATGATAACATCATGACCTA+TGG + chr4.1:22278997-22279016 MS.gene26412:CDS 30.0%
TCATCTTCCTCTAACAATAT+TGG + chr4.1:22278706-22278725 MS.gene26412:CDS 30.0%
TTGCTTGAATGTGTGAATTT+AGG - chr4.1:22278231-22278250 None:intergenic 30.0%
TTTACTGACGATCAATTTCA+AGG + chr4.1:22279222-22279241 MS.gene26412:CDS 30.0%
! ATCAACATTTTCTTGAGGTA+GGG - chr4.1:22278968-22278987 None:intergenic 30.0%
! GTTTCCTGTTTCTTGTTATA+GGG - chr4.1:22278619-22278638 None:intergenic 30.0%
! TGACACCAAAATTAAGTTGT+GGG - chr4.1:22279110-22279129 None:intergenic 30.0%
! TGTTTCCTGTTTCTTGTTAT+AGG - chr4.1:22278620-22278639 None:intergenic 30.0%
!!! GATTTGGTTTTTTTCCTTGT+TGG + chr4.1:22277973-22277992 MS.gene26412:intron 30.0%
!!! TTTGGTTTTTTTCCTTGTTG+GGG + chr4.1:22277975-22277994 MS.gene26412:intron 30.0%
AAACCATTGAAGAGAGAAGA+GGG - chr4.1:22277830-22277849 None:intergenic 35.0%
AAAGAGGAATGGAACATCAT+GGG - chr4.1:22279205-22279224 None:intergenic 35.0%
AACAATCAGAATCTTCTGCA+TGG + chr4.1:22277797-22277816 MS.gene26412:CDS 35.0%
AACATCATGACCTATGGAAA+TGG + chr4.1:22279003-22279022 MS.gene26412:CDS 35.0%
AATTGTTGTGTGTGTTTCTC+AGG + chr4.1:22279592-22279611 MS.gene26412:intron 35.0%
AGTACCCTATAACAAGAAAC+AGG + chr4.1:22278612-22278631 MS.gene26412:CDS 35.0%
ATGCAGAAGATTCTGATTGT+TGG - chr4.1:22277798-22277817 None:intergenic 35.0%
CGTGGACAATTAGAAGAATT+TGG + chr4.1:22278523-22278542 MS.gene26412:CDS 35.0%
GAAATTGATCGTCAGTAAAG+AGG - chr4.1:22279221-22279240 None:intergenic 35.0%
GATGAGATTAAGAAGATACG+TGG + chr4.1:22278505-22278524 MS.gene26412:CDS 35.0%
GGAGATTCCAATATTGTTAG+AGG - chr4.1:22278716-22278735 None:intergenic 35.0%
GGATTTAATGGTATACCTTG+TGG + chr4.1:22280001-22280020 MS.gene26412:intron 35.0%
GGTACATTCAAAGTTAATGC+AGG + chr4.1:22279664-22279683 MS.gene26412:CDS 35.0%
TAAAGAGGAATGGAACATCA+TGG - chr4.1:22279206-22279225 None:intergenic 35.0%
TCAAAGCCATCTATAACTCA+GGG + chr4.1:22278464-22278483 MS.gene26412:CDS 35.0%
TCATTACACTGTATGAACCA+TGG - chr4.1:22278302-22278321 None:intergenic 35.0%
TGTAGGGTGATTACTATCAA+CGG + chr4.1:22279643-22279662 MS.gene26412:CDS 35.0%
TTAGAAGAATTTGGACCGAT+TGG + chr4.1:22278532-22278551 MS.gene26412:CDS 35.0%
TTCTTAATCTCATCTCTACG+TGG - chr4.1:22278499-22278518 None:intergenic 35.0%
TTGAAACCAATAAAAGACGC+TGG - chr4.1:22278563-22278582 None:intergenic 35.0%
! AATTAAGTTGTGGGTCTTGT+TGG - chr4.1:22279101-22279120 None:intergenic 35.0%
! AGCAGATCAACATTTTCTTG+AGG - chr4.1:22278973-22278992 None:intergenic 35.0%
! ATACCCGGTGCTTTATATTT+TGG - chr4.1:22279483-22279502 None:intergenic 35.0%
! CAAGACCCACAACTTAATTT+TGG + chr4.1:22279102-22279121 MS.gene26412:CDS 35.0%
! CTCCAATATTAATGATGGGA+CGG + chr4.1:22278732-22278751 MS.gene26412:CDS 35.0%
! CTTGTTATAGGGTACTTTGT+TGG - chr4.1:22278608-22278627 None:intergenic 35.0%
! GATCAACATTTTCTTGAGGT+AGG - chr4.1:22278969-22278988 None:intergenic 35.0%
! GTGACACCAAAATTAAGTTG+TGG - chr4.1:22279111-22279130 None:intergenic 35.0%
! TACCCGGTGCTTTATATTTT+GGG - chr4.1:22279482-22279501 None:intergenic 35.0%
!! TATAGATGGCTTTGAGAATG+CGG - chr4.1:22278459-22278478 None:intergenic 35.0%
!!! TTGGTTTTTTTCCTTGTTGG+GGG + chr4.1:22277976-22277995 MS.gene26412:intron 35.0%
AACCATTGAAGAGAGAAGAG+GGG - chr4.1:22277829-22277848 None:intergenic 40.0%
AAGAGGAATGGAACATCATG+GGG - chr4.1:22279204-22279223 None:intergenic 40.0%
AATGACATGATAAGGCCAGA+GGG + chr4.1:22278904-22278923 MS.gene26412:CDS 40.0%
ACGATGGTACAGCAAAATGT+AGG + chr4.1:22279626-22279645 MS.gene26412:CDS 40.0%
AGAGAGATTGCAGGTGAATT+AGG - chr4.1:22278766-22278785 None:intergenic 40.0%
AGCAAATATGGTCAGACCAT+TGG - chr4.1:22278169-22278188 None:intergenic 40.0%
CACCGTCCCATCATTAATAT+TGG - chr4.1:22278737-22278756 None:intergenic 40.0%
CGATGGTACAGCAAAATGTA+GGG + chr4.1:22279627-22279646 MS.gene26412:CDS 40.0%
CTCAAAGCCATCTATAACTC+AGG + chr4.1:22278463-22278482 MS.gene26412:CDS 40.0%
CTCTCTTTCAAAGTGTAGAG+TGG + chr4.1:22279939-22279958 MS.gene26412:intron 40.0%
GAAACCATTGAAGAGAGAAG+AGG - chr4.1:22277831-22277850 None:intergenic 40.0%
GACCAATGTACTTTCTTCGA+GGG - chr4.1:22277740-22277759 None:intergenic 40.0%
GAGAAGTAATTAAACCCCTC+TGG - chr4.1:22278922-22278941 None:intergenic 40.0%
GATGATGAAGAAAGAACTCC+TGG + chr4.1:22278397-22278416 MS.gene26412:CDS 40.0%
GCTAGTCACTTCCTGAAAAA+CGG + chr4.1:22279398-22279417 MS.gene26412:intron 40.0%
GTTCGTAAATTCTTTGGCGA+TGG + chr4.1:22279697-22279716 MS.gene26412:CDS 40.0%
TAATGACATGATAAGGCCAG+AGG + chr4.1:22278903-22278922 MS.gene26412:CDS 40.0%
TGACCAATGTACTTTCTTCG+AGG - chr4.1:22277741-22277760 None:intergenic 40.0%
TGAGCAGTTTCCATTTCCAT+AGG - chr4.1:22279016-22279035 None:intergenic 40.0%
TGATCGTCAGTAAAGAGGAA+TGG - chr4.1:22279216-22279235 None:intergenic 40.0%
! ACCCGGTGCTTTATATTTTG+GGG - chr4.1:22279481-22279500 None:intergenic 40.0%
! AGAAAGTACATTGGTCAGAC+AGG + chr4.1:22277744-22277763 MS.gene26412:CDS 40.0%
! GATAAGTACCACCTTGGTTT+TGG - chr4.1:22278792-22278811 None:intergenic 40.0%
! GATGATGAAGATGAGTTGAG+TGG - chr4.1:22278691-22278710 None:intergenic 40.0%
! GGTAGGGATTGACTCATATT+TGG - chr4.1:22278952-22278971 None:intergenic 40.0%
! GTGATTCCAGCGTCTTTTAT+TGG + chr4.1:22278554-22278573 MS.gene26412:CDS 40.0%
! TATTAATGATGGGACGGTGA+TGG + chr4.1:22278738-22278757 MS.gene26412:CDS 40.0%
! TGTGTGTGTTTCTCAGGTTT+TGG + chr4.1:22279598-22279617 MS.gene26412:intron 40.0%
!! GTCTAAACCTTCCGTTTTTC+AGG - chr4.1:22279412-22279431 None:intergenic 40.0%
!! TTTTCAGGAAGTGACTAGCT+AGG - chr4.1:22279397-22279416 None:intergenic 40.0%
AAGAAAGAACTCCTGGACCA+AGG + chr4.1:22278404-22278423 MS.gene26412:CDS 45.0%
AAGACGCTGGAATCACCAAT+CGG - chr4.1:22278550-22278569 None:intergenic 45.0%
ATCTCTCTGAGCCAAAACCA+AGG + chr4.1:22278778-22278797 MS.gene26412:CDS 45.0%
ATGACATGATAAGGCCAGAG+GGG + chr4.1:22278905-22278924 MS.gene26412:CDS 45.0%
ATGATTCTCAACCGGGAAAG+AGG - chr4.1:22278863-22278882 None:intergenic 45.0%
ATGGGGTGCACTATTGTCAA+TGG - chr4.1:22279187-22279206 None:intergenic 45.0%
ATTTGTGGGAGAGAGCTATC+TGG - chr4.1:22278658-22278677 None:intergenic 45.0%
CCCCCCAAAATATAAAGCAC+CGG + chr4.1:22279476-22279495 MS.gene26412:intron 45.0%
CGTCATCCCTGAGTTATAGA+TGG - chr4.1:22278473-22278492 None:intergenic 45.0%
CGTTTATATGACCCCCAACA+AGG - chr4.1:22277990-22278009 None:intergenic 45.0%
CTGTATTAAGGAGCTGAAGC+TGG + chr4.1:22280255-22280274 MS.gene26412:intron 45.0%
GTCACTTCCTGAAAAACGGA+AGG + chr4.1:22279402-22279421 MS.gene26412:intron 45.0%
TGTGAGGATAAGTACCACCT+TGG - chr4.1:22278798-22278817 None:intergenic 45.0%
TTAAGGAGCTGAAGCTGGAA+CGG + chr4.1:22280260-22280279 MS.gene26412:intron 45.0%
! AAAGAGGAAAACGAGGGTGT+AGG - chr4.1:22278847-22278866 None:intergenic 45.0%
! CCCCCAAAATATAAAGCACC+GGG + chr4.1:22279477-22279496 MS.gene26412:intron 45.0%
! CTCCCTCGAAGAAAGTACAT+TGG + chr4.1:22277735-22277754 MS.gene26412:CDS 45.0%
! GATGAAGATGAGTTGAGTGG+TGG - chr4.1:22278688-22278707 None:intergenic 45.0%
! TTGAGAATGCGGATTTGCTC+AGG - chr4.1:22278448-22278467 None:intergenic 45.0%
!! CCCGGTGCTTTATATTTTGG+GGG - chr4.1:22279480-22279499 None:intergenic 45.0%
!! CCGGTGCTTTATATTTTGGG+GGG - chr4.1:22279479-22279498 None:intergenic 45.0%
!! GTGTTTCTCAGGTTTTGGTG+AGG + chr4.1:22279603-22279622 MS.gene26412:intron 45.0%
!!! TTTTGGCTCAGAGAGATTGC+AGG - chr4.1:22278775-22278794 None:intergenic 45.0%
!! TAATAATAATAAAAATTAGA+AGG - chr4.1:22277863-22277882 None:intergenic 5.0%
AACCGGGAAAGAGGAAAACG+AGG - chr4.1:22278854-22278873 None:intergenic 50.0%
ACCGGGAAAGAGGAAAACGA+GGG - chr4.1:22278853-22278872 None:intergenic 50.0%
ACTTATCCTCACACCCTCAC+TGG + chr4.1:22278805-22278824 MS.gene26412:CDS 50.0%
CACTATTGTCAATGGCCGGA+GGG - chr4.1:22279179-22279198 None:intergenic 50.0%
CCAGGAAATAATCAGCCCCA+TGG - chr4.1:22279795-22279814 None:intergenic 50.0%
CCATGGGGCTGATTATTTCC+TGG + chr4.1:22279792-22279811 MS.gene26412:CDS 50.0%
CTCCCCTCTTCTCTCTTCAA+TGG + chr4.1:22277824-22277843 MS.gene26412:intron 50.0%
GCAGTTCTACTTGACTCCTC+CGG + chr4.1:22279721-22279740 MS.gene26412:CDS 50.0%
GGAAATAATCAGCCCCATGG+TGG - chr4.1:22279792-22279811 None:intergenic 50.0%
GGGTGTAGGTAGTTGTAGAC+CGG - chr4.1:22278833-22278852 None:intergenic 50.0%
GGTGCACTATTGTCAATGGC+CGG - chr4.1:22279183-22279202 None:intergenic 50.0%
TCTCTGAGCCAAAACCAAGG+TGG + chr4.1:22278781-22278800 MS.gene26412:CDS 50.0%
! ACCCTCGTTTTCCTCTTTCC+CGG + chr4.1:22278849-22278868 MS.gene26412:CDS 50.0%
! AGATGAGTTGAGTGGTGGTG+TGG - chr4.1:22278683-22278702 None:intergenic 50.0%
! AGTGGTGGTGTGGTGATTTG+TGG - chr4.1:22278673-22278692 None:intergenic 50.0%
! ATGCGGATTTGCTCAGGCTT+TGG - chr4.1:22278442-22278461 None:intergenic 50.0%
! GTGGTGGTGTGGTGATTTGT+GGG - chr4.1:22278672-22278691 None:intergenic 50.0%
! TGCGGATTTGCTCAGGCTTT+GGG - chr4.1:22278441-22278460 None:intergenic 50.0%
! TTGTAGACCGGTTCCAGTGA+GGG - chr4.1:22278821-22278840 None:intergenic 50.0%
! TTTGGGATCCATCTTGGCCT+TGG - chr4.1:22278424-22278443 None:intergenic 50.0%
!! TCAGGCTTTGGGATCCATCT+TGG - chr4.1:22278430-22278449 None:intergenic 50.0%
!! TCAGGTTTTGGTGAGGACGA+TGG + chr4.1:22279610-22279629 MS.gene26412:intron 50.0%
ACCCTCAACTCACTCCACCA+TGG + chr4.1:22279775-22279794 MS.gene26412:CDS 55.0%
AGCTGAAGCTGGAACGGCTA+GGG + chr4.1:22280266-22280285 MS.gene26412:CDS 55.0%
ATCGGTTAGAACCGGGACAC+CGG - chr4.1:22279743-22279762 None:intergenic 55.0%
CCCTCAACTCACTCCACCAT+GGG + chr4.1:22279776-22279795 MS.gene26412:CDS 55.0%
CCTCAACTCACTCCACCATG+GGG + chr4.1:22279777-22279796 MS.gene26412:CDS 55.0%
GCACTATTGTCAATGGCCGG+AGG - chr4.1:22279180-22279199 None:intergenic 55.0%
TGATCTTGCTCCTCTCCCTC+CGG + chr4.1:22279161-22279180 MS.gene26412:CDS 55.0%
! CCCACTCATCGGTTAGAACC+GGG - chr4.1:22279750-22279769 None:intergenic 55.0%
! CCCATGGTGGAGTGAGTTGA+GGG - chr4.1:22279779-22279798 None:intergenic 55.0%
! CCCCACTCATCGGTTAGAAC+CGG - chr4.1:22279751-22279770 None:intergenic 55.0%
! CCCGGTTCTAACCGATGAGT+GGG + chr4.1:22279747-22279766 MS.gene26412:CDS 55.0%
! CCGGTTCTAACCGATGAGTG+GGG + chr4.1:22279748-22279767 MS.gene26412:CDS 55.0%
! GTTGTAGACCGGTTCCAGTG+AGG - chr4.1:22278822-22278841 None:intergenic 55.0%
! TCCCGGTTCTAACCGATGAG+TGG + chr4.1:22279746-22279765 MS.gene26412:CDS 55.0%
!! ATCCATCTTGGCCTTGGTCC+AGG - chr4.1:22278418-22278437 None:intergenic 55.0%
ACTTGACTCCTCCGGTGTCC+CGG + chr4.1:22279729-22279748 MS.gene26412:CDS 60.0%
CCTCACACCCTCACTGGAAC+CGG + chr4.1:22278811-22278830 MS.gene26412:CDS 60.0%
CTCCTGGACCAAGGCCAAGA+TGG + chr4.1:22278413-22278432 MS.gene26412:CDS 60.0%
GAGCTGAAGCTGGAACGGCT+AGG + chr4.1:22280265-22280284 MS.gene26412:CDS 60.0%
GAGGGTGACACCCCACTCAT+CGG - chr4.1:22279761-22279780 None:intergenic 60.0%
TTGTCAATGGCCGGAGGGAG+AGG - chr4.1:22279174-22279193 None:intergenic 60.0%
! CCCCATGGTGGAGTGAGTTG+AGG - chr4.1:22279780-22279799 None:intergenic 60.0%
GGTTAGAACCGGGACACCGG+AGG - chr4.1:22279740-22279759 None:intergenic 65.0%
! CCGGTTCCAGTGAGGGTGTG+AGG - chr4.1:22278814-22278833 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 22277731 22280300 22277731 ID=MS.gene26412
chr4.1 mRNA 22277731 22280300 22277731 ID=MS.gene26412.t1;Parent=MS.gene26412
chr4.1 exon 22277731 22277818 22277731 ID=MS.gene26412.t1.exon1;Parent=MS.gene26412.t1
chr4.1 CDS 22277731 22277818 22277731 ID=cds.MS.gene26412.t1;Parent=MS.gene26412.t1
chr4.1 exon 22278392 22279243 22278392 ID=MS.gene26412.t1.exon2;Parent=MS.gene26412.t1
chr4.1 CDS 22278392 22279243 22278392 ID=cds.MS.gene26412.t1;Parent=MS.gene26412.t1
chr4.1 exon 22279614 22279813 22279614 ID=MS.gene26412.t1.exon3;Parent=MS.gene26412.t1
chr4.1 CDS 22279614 22279813 22279614 ID=cds.MS.gene26412.t1;Parent=MS.gene26412.t1
chr4.1 exon 22280265 22280300 22280265 ID=MS.gene26412.t1.exon4;Parent=MS.gene26412.t1
chr4.1 CDS 22280265 22280300 22280265 ID=cds.MS.gene26412.t1;Parent=MS.gene26412.t1
Gene Sequence

>MS.gene26412

ATGGCTCCCTCGAAGAAAGTACATTGGTCAGACAGGTTCAAAAAATCGACAAAATCGTCGAAGTCCAACAATCAGAATCTTCTGCATGGTGATCTCCCCTCTTCTCTCTTCAATGGTTTCCAAACAACTCCTTCTAATTTTTATTATTATTATTTAATCAAACTGACATGTATGTTTGTATGAAAGATCAAAATCAATGACTATACAAACTAAAAAAGTCCAATCGAAACAAATTATATATCGATTTGGTTTTTTTCCTTGTTGGGGGTCATATAAACGAATCAAACTAAACAAATCTTTTTTATTGAATGGCAAACCAAACAAATTTGATCTTTACTATTTGATCTTAGCTTTAAAAAGATTTTTTTTTTTTGAAAGATTAGCTTTAAAAAAAAATTAAAAGCCTAAATCTAAACATCAACTATTTGATCTTTTCCAATGGTCTGACCATATTTGCTTGACAATGTAAATTTAGGATTTGAATGCAAGTAAAGTTTCCTAAATTCACACATTCAAGCAAATCTAACCCATAAAAAATTAGTTATAGAAATATCAGAATATTAATACTCCATGGTTCATACAGTGTAATGAATATCTTTCAGTCAAATTTATAATTTCTAAACTTTGCATGTTTGATTGGCTTACGACAAATATTTTTTAGGTGGAGATGATGAAGAAAGAACTCCTGGACCAAGGCCAAGATGGATCCCAAAGCCTGAGCAAATCCGCATTCTCAAAGCCATCTATAACTCAGGGATGACGAATCCACGTAGAGATGAGATTAAGAAGATACGTGGACAATTAGAAGAATTTGGACCGATTGGTGATTCCAGCGTCTTTTATTGGTTTCAAAATCGCAAGTACAGAAGCAAAACCAACAAAGTACCCTATAACAAGAAACAGGAAACACAACAAAACGCAGCTCCAGATAGCTCTCTCCCACAAATCACCACACCACCACTCAACTCATCTTCATCATCTTCCTCTAACAATATTGGAATCTCCAATATTAATGATGGGACGGTGATGGTGCCTAATTCACCTGCAATCTCTCTGAGCCAAAACCAAGGTGGTACTTATCCTCACACCCTCACTGGAACCGGTCTACAACTACCTACACCCTCGTTTTCCTCTTTCCCGGTTGAGAATCATATTAATGAAAGGGTAGTGCTTAATGACATGATAAGGCCAGAGGGGTTTAATTACTTCTCTGATTTTCCAAATATGAGTCAATCCCTACCTCAAGAAAATGTTGATCTGCTTAATTATGATAACATCATGACCTATGGAAATGGAAACTGCTCAATCGATGACCTTTTTTATCAAGAGAATATTCAAGAGGAGTCGATTAATATGATGCATATGCACCAACAAGACCCACAACTTAATTTTGGTGTCACGACAGCTTCAAGTAATGATGATCATTCAACTGATCTTGCTCCTCTCCCTCCGGCCATTGACAATAGTGCACCCCATGATGTTCCATTCCTCTTTACTGACGATCAATTTCAAGGTAATGAATATTAATTTTTACTAAGTGATTAAACTCAAGTGCTAAATAATTCCAATTAAGGATGAATATTTGAAAACAAACTGATTCAAATCCTAGCTAGTTTGAACAATTTTTTTATCAAACTTTACTTATGTGTCAAACTCTAAATAACCTAGCTAGTCACTTCCTGAAAAACGGAAGGTTTAGACAAAATATATATCAATATTTATATGTGTGTGTGCGCACACGCGCGCCCCCCAAAATATAAAGCACCGGGTATGATTATGATTTATATATCTCATGGACATGTGCAATGTGTATAGCTTCATTTAGTTGATGTTTGTGTTTTCGAGTTGCATATGACTCGTAAATTGTTGTGTGTGTTTCTCAGGTTTTGGTGAGGACGATGGTACAGCAAAATGTAGGGTGATTACTATCAACGGTACATTCAAAGTTAATGCAGGGCCTTTTAACGTTCGTAAATTCTTTGGCGATGGAGCAGTTCTACTTGACTCCTCCGGTGTCCCGGTTCTAACCGATGAGTGGGGTGTCACCCTCAACTCACTCCACCATGGGGCTGATTATTTCCTGGTCTGCAATTTTTTCTTATAGCATAAGCTTTGTTCATAAACGTTTTTACTAATATATATAATGAGTGATCAACACTTTCTATCATGCATCACTATTTATCACATTATCACTCTCTCTATAACACACTCTCTTTCAAAGTGTAGAGTGGTATTTGTGTGTCTATAGATTATTTTCCATATATAATTATGGATTTAATGGTATACCTTGTGGGTGTAAATATTTTTTTTTTTTTACAGATAAATAAAACTGTTAGTTCATTAAATTATTTCGAAAATCACGTATAGGAATAACTGTGATGATTTTATAGTGTAAAAGTTTTTGTTTGAAGTTAATCAAAGTTATTTTTTTTGTTGGTAGAATAATCAAAATTAAATTAATATGAATAAGTGAAGCATATACATTTTAATGCTATTAATCATTTTTTGCAATTTTCTTTTTCAGCTGTATTAAGGAGCTGAAGCTGGAACGGCTAGGGATGCGAGATTGA

Protein sequence

>MS.gene26412.t1

MAPSKKVHWSDRFKKSTKSSKSNNQNLLHGGDDEERTPGPRPRWIPKPEQIRILKAIYNSGMTNPRRDEIKKIRGQLEEFGPIGDSSVFYWFQNRKYRSKTNKVPYNKKQETQQNAAPDSSLPQITTPPLNSSSSSSSNNIGISNINDGTVMVPNSPAISLSQNQGGTYPHTLTGTGLQLPTPSFSSFPVENHINERVVLNDMIRPEGFNYFSDFPNMSQSLPQENVDLLNYDNIMTYGNGNCSIDDLFYQENIQEESINMMHMHQQDPQLNFGVTTASSNDDHSTDLAPLPPAIDNSAPHDVPFLFTDDQFQGFGEDDGTAKCRVITINGTFKVNAGPFNVRKFFGDGAVLLDSSGVPVLTDEWGVTLNSLHHGADYFLELKLERLGMRD