AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26446

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26446.t1 MTR_4g085910 97.606 376 9 0 1 376 1 376 0.0 753
MS.gene26446.t1 MTR_3g101780 45.433 427 151 12 14 376 23 431 1.10e-90 279
MS.gene26446.t1 MTR_7g104480 34.307 411 176 16 24 370 45 425 2.93e-35 134
MS.gene26446.t1 MTR_8g043960 45.802 131 63 2 17 144 23 148 1.08e-29 116
MS.gene26446.t1 MTR_8g043960 75.000 56 13 1 296 350 237 292 2.72e-15 76.3
MS.gene26446.t1 MTR_7g088090 45.385 130 66 2 17 144 15 141 1.56e-26 108
MS.gene26446.t1 MTR_7g088090 70.492 61 14 1 288 344 232 292 3.13e-16 79.0
MS.gene26446.t1 MTR_3g010660 45.455 132 60 4 18 144 20 144 8.07e-25 103
MS.gene26446.t1 MTR_3g010660 66.667 57 18 1 296 352 246 301 8.32e-15 75.1
MS.gene26446.t1 MTR_6g026800 41.611 149 75 4 18 156 16 162 6.54e-24 100
MS.gene26446.t1 MTR_5g088230 42.188 128 59 4 18 138 17 136 3.89e-16 78.2
MS.gene26446.t1 MTR_5g088230 42.188 128 59 4 18 138 22 141 4.42e-16 77.8
MS.gene26446.t1 MTR_2g086340 36.296 135 68 4 19 142 23 150 2.04e-14 73.9
MS.gene26446.t1 MTR_2g086390 50.575 87 41 2 286 371 194 279 4.75e-13 69.3
MS.gene26446.t1 MTR_2g086390 60.000 60 23 1 286 344 194 253 9.58e-13 68.6
MS.gene26446.t1 MTR_1g098590 45.679 81 41 1 296 376 157 234 1.17e-12 67.4
MS.gene26446.t1 MTR_1g098590 60.377 53 21 0 296 348 157 209 1.53e-12 67.0
MS.gene26446.t1 MTR_7g015990 68.627 51 13 1 301 348 120 170 2.01e-12 65.9
MS.gene26446.t1 MTR_1g098590 60.377 53 21 0 296 348 157 209 2.57e-12 66.6
MS.gene26446.t1 MTR_5g022780 51.220 82 23 2 301 365 166 247 7.71e-12 65.1
MS.gene26446.t1 MTR_4g094390 60.377 53 21 0 296 348 125 177 1.71e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26446.t1 AT1G49720 45.897 390 160 11 18 376 23 392 3.17e-92 282
MS.gene26446.t1 AT1G49720 45.897 390 160 11 18 376 23 392 3.17e-92 282
MS.gene26446.t1 AT4G34000 44.570 442 154 17 15 376 24 454 7.82e-92 283
MS.gene26446.t1 AT4G34000 44.570 442 154 17 15 376 24 454 7.82e-92 283
MS.gene26446.t1 AT4G34000 44.570 442 154 17 15 376 24 454 7.82e-92 283
MS.gene26446.t1 AT1G45249 47.215 413 147 16 18 376 21 416 2.76e-89 275
MS.gene26446.t1 AT1G45249 47.215 413 147 16 18 376 36 431 4.87e-89 275
MS.gene26446.t1 AT1G45249 47.215 413 147 16 18 376 36 431 4.87e-89 275
MS.gene26446.t1 AT3G19290 44.340 424 163 13 10 376 25 432 4.98e-88 273
MS.gene26446.t1 AT1G49720 46.301 365 150 10 18 356 23 367 5.34e-88 271
MS.gene26446.t1 AT3G19290 44.550 422 164 13 10 376 25 431 6.01e-88 272
MS.gene26446.t1 AT3G19290 44.550 422 164 13 10 376 25 431 6.01e-88 272
MS.gene26446.t1 AT1G45249 45.991 424 147 17 18 376 21 427 1.19e-85 266
MS.gene26446.t1 AT4G34000 44.717 407 140 16 15 347 24 419 1.84e-84 264
MS.gene26446.t1 AT3G19290 43.970 398 157 11 10 356 25 407 5.92e-83 259
MS.gene26446.t1 AT1G45249 43.889 360 135 15 18 327 21 363 1.98e-64 210
MS.gene26446.t1 AT1G45249 43.889 360 135 15 18 327 21 363 1.98e-64 210
MS.gene26446.t1 AT3G19290 41.530 366 148 11 10 324 25 375 9.15e-64 209
MS.gene26446.t1 AT1G45249 42.744 379 143 17 18 339 21 382 4.84e-63 207
MS.gene26446.t1 AT1G45249 42.744 379 143 17 18 339 21 382 4.84e-63 207
MS.gene26446.t1 AT1G45249 42.744 379 143 17 18 339 21 382 4.84e-63 207
MS.gene26446.t1 AT1G45249 42.744 379 143 17 18 339 21 382 4.84e-63 207
MS.gene26446.t1 AT5G42910 36.022 372 167 15 13 353 15 346 3.03e-39 144
MS.gene26446.t1 AT3G56850 49.306 144 57 5 10 145 8 143 4.51e-31 120
MS.gene26446.t1 AT3G56850 57.143 91 31 3 290 376 211 297 2.01e-16 79.3
MS.gene26446.t1 AT2G41070 35.503 169 83 2 10 173 8 155 7.99e-26 104
MS.gene26446.t1 AT2G41070 65.672 67 20 1 290 353 177 243 1.62e-16 79.0
MS.gene26446.t1 AT2G41070 35.503 169 83 2 10 173 8 155 1.19e-25 104
MS.gene26446.t1 AT2G41070 68.182 66 20 1 280 344 169 234 5.03e-16 77.8
MS.gene26446.t1 AT2G41070 35.503 169 83 2 10 173 8 155 1.19e-25 104
MS.gene26446.t1 AT2G41070 68.182 66 20 1 280 344 169 234 5.03e-16 77.8
MS.gene26446.t1 AT2G41070 35.503 169 83 2 10 173 8 155 1.19e-25 104
MS.gene26446.t1 AT2G41070 68.182 66 20 1 280 344 169 234 5.03e-16 77.8
MS.gene26446.t1 AT2G41070 35.503 169 83 2 10 173 17 164 1.41e-25 104
MS.gene26446.t1 AT2G41070 74.138 58 12 1 290 344 186 243 4.85e-16 77.8
MS.gene26446.t1 AT3G44460 44.118 136 54 6 18 140 35 161 2.31e-20 91.3
MS.gene26446.t1 AT2G36270 35.676 185 59 3 16 140 35 219 9.19e-20 90.9
MS.gene26446.t1 AT2G36270 67.606 71 20 1 289 356 341 411 4.34e-18 85.9
MS.gene26446.t1 AT2G36270 35.676 185 59 3 16 140 35 219 9.19e-20 90.9
MS.gene26446.t1 AT2G36270 67.606 71 20 1 289 356 341 411 4.34e-18 85.9
MS.gene26446.t1 AT2G36270 35.870 184 58 3 17 140 36 219 1.28e-19 90.5
MS.gene26446.t1 AT2G36270 63.636 77 22 2 289 362 341 414 4.67e-18 85.9
MS.gene26446.t1 AT4G35900 53.333 75 30 2 302 376 216 285 1.94e-13 70.5
MS.gene26446.t1 AT2G17770 51.316 76 32 2 301 376 125 195 1.12e-12 66.6
MS.gene26446.t1 AT5G44080 63.793 58 20 1 289 345 219 276 1.18e-12 68.6
MS.gene26446.t1 AT1G03970 60.656 61 23 1 289 348 175 235 2.87e-12 67.0

Find 91 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATACAGGCAGAGTTTA+TGG 0.190438 4.1:+23747790 MS.gene26446:intron
ATGCTACAGTTGTAGGTTTC+GGG 0.224383 4.1:-23747061 None:intergenic
CTAAACCATTCATTATTATT+TGG 0.243582 4.1:-23746876 None:intergenic
AGAGAAAAGTTGATGAAGTT+TGG 0.248226 4.1:+23746715 MS.gene26446:CDS
CAACAACCAAATGGAAATAA+TGG 0.257332 4.1:+23746942 MS.gene26446:CDS
CTACCACCATTTGGGTTGTT+AGG 0.265606 4.1:-23746648 None:intergenic
CCTAATGTTGGTTGTCTTTG+AGG 0.269893 4.1:-23746771 None:intergenic
GAAGAAAATGCTACAGTTGT+AGG 0.325476 4.1:-23747068 None:intergenic
TACTTGAGAAGGACACTTAC+AGG 0.325650 4.1:+23747860 MS.gene26446:CDS
CTTGCTAGATTAACACTTCC+AGG 0.329485 4.1:-23746459 None:intergenic
AATGCTACAGTTGTAGGTTT+CGG 0.329976 4.1:-23747062 None:intergenic
TTACTTCCTGGAGAAGTAAC+AGG 0.334643 4.1:-23747191 None:intergenic
GGAGGAAGAGGAACATGTTT+AGG 0.346580 4.1:-23746993 None:intergenic
AACAACCAAATGGAAATAAT+GGG 0.348398 4.1:+23746943 MS.gene26446:CDS
TCAATTTGTTGAGCATGATT+AGG 0.349738 4.1:-23746849 None:intergenic
CTCCCTCTGTTGATTGCATA+AGG 0.369742 4.1:-23747272 None:intergenic
TTTGCAAACTACCACCATTT+GGG 0.380553 4.1:-23746656 None:intergenic
AAGTGTGTTCCTGTAGAAAA+AGG 0.390691 4.1:+23747296 MS.gene26446:CDS
GAGGTCACGGGCTCGCAAAC+AGG 0.396241 4.1:+23747367 MS.gene26446:CDS
ATATCCCCATTATTTCCATT+TGG 0.401525 4.1:-23746948 None:intergenic
ATGAGTTACAAAGCACCATT+GGG 0.416914 4.1:+23746511 MS.gene26446:CDS
AACATTAGGTGAAGTGACTT+TGG 0.430676 4.1:+23746785 MS.gene26446:CDS
CCTCAAAGACAACCAACATT+AGG 0.434960 4.1:+23746771 MS.gene26446:CDS
TTTCTCTGACTAAGTGTCCT+TGG 0.439082 4.1:-23746699 None:intergenic
CTTGGCTTTCAACAACCAAA+TGG 0.439959 4.1:+23746933 MS.gene26446:CDS
GGCTGAAGTTGCAAAACTTA+AGG 0.442265 4.1:+23747651 MS.gene26446:CDS
TATGGAAATGCAGAAAAGTA+AGG 0.444656 4.1:+23747808 MS.gene26446:CDS
CGAGGAATTACAAAGAAAAC+AGG 0.444987 4.1:+23747681 MS.gene26446:CDS
CAAGCATTGACATCTCTAAC+TGG 0.446103 4.1:+23746606 MS.gene26446:CDS
GCATTGTTTAGCAAATGAAT+AGG 0.446181 4.1:-23747092 None:intergenic
AATGGCAGAAGTGTAGTTCC+TGG 0.450498 4.1:+23747128 MS.gene26446:CDS
GCAGAAAAGTAAGGAGGATC+TGG 0.454613 4.1:+23747817 MS.gene26446:CDS
TGATTCAAGTTAATTGATGA+AGG 0.454755 4.1:-23747014 None:intergenic
GATGAGTTACAAAGCACCAT+TGG 0.454822 4.1:+23746510 MS.gene26446:CDS
AAAGGCCTACACTGTTGAAC+TGG 0.460693 4.1:+23747627 MS.gene26446:intron
TTACGCTTTGTAATCAAATC+CGG 0.464033 4.1:-23747221 None:intergenic
AAAGACCAAATAATAATGAA+TGG 0.465002 4.1:+23746871 MS.gene26446:CDS
AACAATAACACCAATCTACT+TGG 0.466588 4.1:+23746915 MS.gene26446:CDS
CTGTTGATTGCATAAGGAAC+TGG 0.477558 4.1:-23747266 None:intergenic
AAAAGTTGATGAAGTTTGGA+GGG 0.481612 4.1:+23746719 MS.gene26446:CDS
GGAACTGGTGACAGTAAAGT+AGG 0.483859 4.1:-23747251 None:intergenic
GTTCCTGGTGTTGGAATGCA+TGG 0.487439 4.1:+23747143 MS.gene26446:CDS
AGGGATTTGATGAAAGATAG+TGG 0.487452 4.1:+23746738 MS.gene26446:CDS
ACAGCTCCTGTTACTTCTCC+AGG 0.488845 4.1:+23747185 MS.gene26446:CDS
GAGAATCAGCTGCGAGGTCA+CGG 0.489882 4.1:+23747354 MS.gene26446:CDS
TTGCTAAACAATGCTCAACT+TGG 0.492309 4.1:+23747101 MS.gene26446:CDS
GAAAAGTTGATGAAGTTTGG+AGG 0.496145 4.1:+23746718 MS.gene26446:CDS
GGGTCAAAATGAACTTCGCT+TGG 0.497946 4.1:+23746415 None:intergenic
TTAATTGATGAAGGAGGAAG+AGG 0.498832 4.1:-23747005 None:intergenic
TCTCTAACTGGTGGAGGAGT+AGG 0.517394 4.1:+23746618 MS.gene26446:CDS
GAAGGACCTAACAACCCAAA+TGG 0.541425 4.1:+23746642 MS.gene26446:CDS
GTTGTAGGTTTCGGGAAAAG+TGG 0.542287 4.1:-23747053 None:intergenic
AACAGGAGCTGTGACATTTG+AGG 0.542288 4.1:-23747174 None:intergenic
AGAATCAGCTGCGAGGTCAC+GGG 0.543539 4.1:+23747355 MS.gene26446:CDS
ATAAAATAAAATACTTGAGA+AGG 0.546602 4.1:+23747849 MS.gene26446:CDS
TTGTTGAAAGCCAAGTAGAT+TGG 0.562943 4.1:-23746925 None:intergenic
TGAGGGAGTATATTGAAGAC+TGG 0.563542 4.1:-23746482 None:intergenic
GGTCAAAATGAACTTCGCTT+GGG 0.564260 4.1:+23746416 None:intergenic
AAAGTCACTTCACCTAATGT+TGG 0.567590 4.1:-23746783 None:intergenic
ATTAGGTGAAGTGACTTTGG+AGG 0.571566 4.1:+23746788 MS.gene26446:CDS
GAACTGGTGACAGTAAAGTA+GGG 0.576448 4.1:-23747250 None:intergenic
TCCAGGAAGTAAAATGTCGC+CGG 0.577416 4.1:+23747202 MS.gene26446:CDS
GCAATGAGTGTGAAGACACC+TGG 0.579770 4.1:+23746441 MS.gene26446:CDS
TTGACATCTCTAACTGGTGG+AGG 0.580857 4.1:+23746612 MS.gene26446:CDS
TTCAAGTTAATTGATGAAGG+AGG 0.584325 4.1:-23747011 None:intergenic
TTTGTAACTCATCAAAAGTG+AGG 0.603693 4.1:-23746500 None:intergenic
TTGTAACTCATCAAAAGTGA+GGG 0.607665 4.1:-23746499 None:intergenic
GTAGGTTTCGGGAAAAGTGG+TGG 0.611415 4.1:-23747050 None:intergenic
TTCCTTATGCAATCAACAGA+GGG 0.614058 4.1:+23747270 MS.gene26446:CDS
GGTTTCGGGAAAAGTGGTGG+CGG 0.614066 4.1:-23747047 None:intergenic
AGAAGTGTAGTTCCTGGTGT+TGG 0.622376 4.1:+23747134 MS.gene26446:CDS
AATGCTCAACTTGGTAACAA+TGG 0.622719 4.1:+23747110 MS.gene26446:CDS
GAAGGACACTTACAGGTCCA+TGG 0.625288 4.1:+23747867 MS.gene26446:CDS
GGCCTACACTGTTGAACTGG+AGG 0.626943 4.1:+23747630 MS.gene26446:intron
GCATTGACATCTCTAACTGG+TGG 0.627413 4.1:+23746609 MS.gene26446:CDS
ACTGGTGGAGGAGTAGGAGA+AGG 0.628322 4.1:+23746624 MS.gene26446:CDS
TTAACTTGAATCACTCTCAA+CGG 0.629011 4.1:+23747024 MS.gene26446:CDS
AAGGTTCATTGACATTGCCA+AGG 0.629803 4.1:+23746682 MS.gene26446:CDS
ACAACTCACATAATCTACCA+TGG 0.634836 4.1:-23747884 None:intergenic
ACAACCAAATGGAAATAATG+GGG 0.659967 4.1:+23746944 MS.gene26446:CDS
AAACCATGCATTCCAACACC+AGG 0.661096 4.1:-23747146 None:intergenic
GGAAATGCAGAAAAGTAAGG+AGG 0.663949 4.1:+23747811 MS.gene26446:CDS
CTTATGCAATCAACAGAGGG+AGG 0.664407 4.1:+23747273 MS.gene26446:CDS
GGACCTAACAACCCAAATGG+TGG 0.667509 4.1:+23746645 MS.gene26446:CDS
GTTCCTTATGCAATCAACAG+AGG 0.671116 4.1:+23747269 MS.gene26446:CDS
AGCCTCCAGTTCAACAGTGT+AGG 0.672463 4.1:-23747632 None:intergenic
TGAGTTACAAAGCACCATTG+GGG 0.703369 4.1:+23746512 MS.gene26446:CDS
GAGTTACAAAGCACCATTGG+GGG 0.704982 4.1:+23746513 MS.gene26446:CDS
AAAGTAAGGAGGATCTGGTG+CGG 0.707722 4.1:+23747822 MS.gene26446:CDS
AGAATAGAGAATCAGCTGCG+AGG 0.715608 4.1:+23747348 MS.gene26446:CDS
AAAACTTAAGGAAGTAAACG+AGG 0.734887 4.1:+23747663 MS.gene26446:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAAATACTTGAGA+AGG + chr4.1:23747849-23747868 MS.gene26446:CDS 15.0%
!!! AAATATTTGTTTCTTTTGAA+TGG + chr4.1:23747604-23747623 MS.gene26446:intron 15.0%
!! AAAGACCAAATAATAATGAA+TGG + chr4.1:23746871-23746890 MS.gene26446:CDS 20.0%
!! ATACATTATATGTGTATTGA+AGG - chr4.1:23747506-23747525 None:intergenic 20.0%
!! CTAAACCATTCATTATTATT+TGG - chr4.1:23746879-23746898 None:intergenic 20.0%
!! TATTAAAATGATGTAAGCAT+TGG + chr4.1:23747560-23747579 MS.gene26446:intron 20.0%
! AACAACCAAATGGAAATAAT+GGG + chr4.1:23746943-23746962 MS.gene26446:CDS 25.0%
! ATAACAAGATCATAAGCTTA+AGG + chr4.1:23747524-23747543 MS.gene26446:intron 25.0%
! ATGAACTCTTGAAAAACATA+TGG + chr4.1:23746568-23746587 MS.gene26446:CDS 25.0%
!! TGATTCAAGTTAATTGATGA+AGG - chr4.1:23747017-23747036 None:intergenic 25.0%
!!! TTTGTTTCTTTTGAATGGAA+AGG + chr4.1:23747609-23747628 MS.gene26446:intron 25.0%
AAAACTTAAGGAAGTAAACG+AGG + chr4.1:23747663-23747682 MS.gene26446:CDS 30.0%
AACAATAACACCAATCTACT+TGG + chr4.1:23746915-23746934 MS.gene26446:CDS 30.0%
ACAACCAAATGGAAATAATG+GGG + chr4.1:23746944-23746963 MS.gene26446:CDS 30.0%
ATATCCCCATTATTTCCATT+TGG - chr4.1:23746951-23746970 None:intergenic 30.0%
CAACAACCAAATGGAAATAA+TGG + chr4.1:23746942-23746961 MS.gene26446:CDS 30.0%
CATCAGTAATATGTTCACTA+AGG + chr4.1:23747735-23747754 MS.gene26446:intron 30.0%
GCATTGTTTAGCAAATGAAT+AGG - chr4.1:23747095-23747114 None:intergenic 30.0%
TATGGAAATGCAGAAAAGTA+AGG + chr4.1:23747808-23747827 MS.gene26446:CDS 30.0%
TTACAGTTTCTGACTACATT+TGG + chr4.1:23747767-23747786 MS.gene26446:intron 30.0%
TTACGCTTTGTAATCAAATC+CGG - chr4.1:23747224-23747243 None:intergenic 30.0%
TTGTAACTCATCAAAAGTGA+GGG - chr4.1:23746502-23746521 None:intergenic 30.0%
TTTGTAACTCATCAAAAGTG+AGG - chr4.1:23746503-23746522 None:intergenic 30.0%
! AGATTTTGGATCAATGAACA+TGG + chr4.1:23746545-23746564 MS.gene26446:CDS 30.0%
! TTAACTTGAATCACTCTCAA+CGG + chr4.1:23747024-23747043 MS.gene26446:CDS 30.0%
! TTCAAGTTAATTGATGAAGG+AGG - chr4.1:23747014-23747033 None:intergenic 30.0%
!! AAAAGTTGATGAAGTTTGGA+GGG + chr4.1:23746719-23746738 MS.gene26446:CDS 30.0%
!! AGAGAAAAGTTGATGAAGTT+TGG + chr4.1:23746715-23746734 MS.gene26446:CDS 30.0%
!! TCAATTTGTTGAGCATGATT+AGG - chr4.1:23746852-23746871 None:intergenic 30.0%
AAAGTCACTTCACCTAATGT+TGG - chr4.1:23746786-23746805 None:intergenic 35.0%
AACATTAGGTGAAGTGACTT+TGG + chr4.1:23746785-23746804 MS.gene26446:CDS 35.0%
AAGTGTGTTCCTGTAGAAAA+AGG + chr4.1:23747296-23747315 MS.gene26446:CDS 35.0%
AATGCTACAGTTGTAGGTTT+CGG - chr4.1:23747065-23747084 None:intergenic 35.0%
AGGGATTTGATGAAAGATAG+TGG + chr4.1:23746738-23746757 MS.gene26446:CDS 35.0%
CGAGGAATTACAAAGAAAAC+AGG + chr4.1:23747681-23747700 MS.gene26446:CDS 35.0%
GAAGAAAATGCTACAGTTGT+AGG - chr4.1:23747071-23747090 None:intergenic 35.0%
GACTACATTTGGTATGATAC+AGG + chr4.1:23747778-23747797 MS.gene26446:intron 35.0%
GATCAGAGAAACAAAACAGA+TGG - chr4.1:23747447-23747466 None:intergenic 35.0%
TATGATACAGGCAGAGTTTA+TGG + chr4.1:23747790-23747809 MS.gene26446:intron 35.0%
TTAATTGATGAAGGAGGAAG+AGG - chr4.1:23747008-23747027 None:intergenic 35.0%
TTCCTTATGCAATCAACAGA+GGG + chr4.1:23747270-23747289 MS.gene26446:CDS 35.0%
TTGCTAAACAATGCTCAACT+TGG + chr4.1:23747101-23747120 MS.gene26446:CDS 35.0%
TTGTTGAAAGCCAAGTAGAT+TGG - chr4.1:23746928-23746947 None:intergenic 35.0%
TTTGCAAACTACCACCATTT+GGG - chr4.1:23746659-23746678 None:intergenic 35.0%
! AATGCTCAACTTGGTAACAA+TGG + chr4.1:23747110-23747129 MS.gene26446:CDS 35.0%
! ATGAGTTACAAAGCACCATT+GGG + chr4.1:23746511-23746530 MS.gene26446:CDS 35.0%
! CTTTCAACACCTTTTTCTAC+AGG - chr4.1:23747308-23747327 None:intergenic 35.0%
! TTTTGCAAACTACCACCATT+TGG - chr4.1:23746660-23746679 None:intergenic 35.0%
!! CTGTAGAAAAAGGTGTTGAA+AGG + chr4.1:23747306-23747325 MS.gene26446:CDS 35.0%
!! GAAAAGTTGATGAAGTTTGG+AGG + chr4.1:23746718-23746737 MS.gene26446:CDS 35.0%
AAGGTTCATTGACATTGCCA+AGG + chr4.1:23746682-23746701 MS.gene26446:CDS 40.0%
ATGCTACAGTTGTAGGTTTC+GGG - chr4.1:23747064-23747083 None:intergenic 40.0%
ATTAGGTGAAGTGACTTTGG+AGG + chr4.1:23746788-23746807 MS.gene26446:CDS 40.0%
CCTCAAAGACAACCAACATT+AGG + chr4.1:23746771-23746790 MS.gene26446:CDS 40.0%
CTTGCTAGATTAACACTTCC+AGG - chr4.1:23746462-23746481 None:intergenic 40.0%
GAACTGGTGACAGTAAAGTA+GGG - chr4.1:23747253-23747272 None:intergenic 40.0%
GGAAATGCAGAAAAGTAAGG+AGG + chr4.1:23747811-23747830 MS.gene26446:CDS 40.0%
GGCTGAAGTTGCAAAACTTA+AGG + chr4.1:23747651-23747670 MS.gene26446:CDS 40.0%
GTTCCTTATGCAATCAACAG+AGG + chr4.1:23747269-23747288 MS.gene26446:CDS 40.0%
TACTTGAGAAGGACACTTAC+AGG + chr4.1:23747860-23747879 MS.gene26446:CDS 40.0%
TTACTTCCTGGAGAAGTAAC+AGG - chr4.1:23747194-23747213 None:intergenic 40.0%
TTTCTCTGACTAAGTGTCCT+TGG - chr4.1:23746702-23746721 None:intergenic 40.0%
! CCTAATGTTGGTTGTCTTTG+AGG - chr4.1:23746774-23746793 None:intergenic 40.0%
! CTGTTGATTGCATAAGGAAC+TGG - chr4.1:23747269-23747288 None:intergenic 40.0%
! CTTGGCTTTCAACAACCAAA+TGG + chr4.1:23746933-23746952 MS.gene26446:CDS 40.0%
! GATGAGTTACAAAGCACCAT+TGG + chr4.1:23746510-23746529 MS.gene26446:CDS 40.0%
! GGTGGTAGTTTGCAAAAACA+AGG + chr4.1:23746663-23746682 MS.gene26446:CDS 40.0%
! TGAGGGAGTATATTGAAGAC+TGG - chr4.1:23746485-23746504 None:intergenic 40.0%
! TGAGTTACAAAGCACCATTG+GGG + chr4.1:23746512-23746531 MS.gene26446:CDS 40.0%
!! AGTGACTTTGGAGGAGTTTT+TGG + chr4.1:23746797-23746816 MS.gene26446:CDS 40.0%
!! CAAGCATTGACATCTCTAAC+TGG + chr4.1:23746606-23746625 MS.gene26446:CDS 40.0%
AAACCATGCATTCCAACACC+AGG - chr4.1:23747149-23747168 None:intergenic 45.0%
AAAGGCCTACACTGTTGAAC+TGG + chr4.1:23747627-23747646 MS.gene26446:intron 45.0%
AAAGTAAGGAGGATCTGGTG+CGG + chr4.1:23747822-23747841 MS.gene26446:CDS 45.0%
AACAGGAGCTGTGACATTTG+AGG - chr4.1:23747177-23747196 None:intergenic 45.0%
AGAATAGAGAATCAGCTGCG+AGG + chr4.1:23747348-23747367 MS.gene26446:CDS 45.0%
CTTATGCAATCAACAGAGGG+AGG + chr4.1:23747273-23747292 MS.gene26446:CDS 45.0%
GAAGGACCTAACAACCCAAA+TGG + chr4.1:23746642-23746661 MS.gene26446:CDS 45.0%
GCAGAAAAGTAAGGAGGATC+TGG + chr4.1:23747817-23747836 MS.gene26446:CDS 45.0%
GGAACTGGTGACAGTAAAGT+AGG - chr4.1:23747254-23747273 None:intergenic 45.0%
GGAGGAAGAGGAACATGTTT+AGG - chr4.1:23746996-23747015 None:intergenic 45.0%
GTTGTAGGTTTCGGGAAAAG+TGG - chr4.1:23747056-23747075 None:intergenic 45.0%
TCCAGGAAGTAAAATGTCGC+CGG + chr4.1:23747202-23747221 MS.gene26446:CDS 45.0%
TTGACATCTCTAACTGGTGG+AGG + chr4.1:23746612-23746631 MS.gene26446:CDS 45.0%
! AATGGCAGAAGTGTAGTTCC+TGG + chr4.1:23747128-23747147 MS.gene26446:CDS 45.0%
! AGAAGTGTAGTTCCTGGTGT+TGG + chr4.1:23747134-23747153 MS.gene26446:CDS 45.0%
! ATCTTTTCCAACTCCCCCAA+TGG - chr4.1:23746529-23746548 None:intergenic 45.0%
! CTCCCTCTGTTGATTGCATA+AGG - chr4.1:23747275-23747294 None:intergenic 45.0%
! GAGTTACAAAGCACCATTGG+GGG + chr4.1:23746513-23746532 MS.gene26446:CDS 45.0%
! GCATTGACATCTCTAACTGG+TGG + chr4.1:23746609-23746628 MS.gene26446:CDS 45.0%
! GGGGGAGTTGGAAAAGATTT+TGG + chr4.1:23746531-23746550 MS.gene26446:CDS 45.0%
!! CTACCACCATTTGGGTTGTT+AGG - chr4.1:23746651-23746670 None:intergenic 45.0%
AGCCTCCAGTTCAACAGTGT+AGG - chr4.1:23747635-23747654 None:intergenic 50.0%
GAAGGACACTTACAGGTCCA+TGG + chr4.1:23747867-23747886 MS.gene26446:CDS 50.0%
GCAATGAGTGTGAAGACACC+TGG + chr4.1:23746441-23746460 MS.gene26446:CDS 50.0%
GGACCTAACAACCCAAATGG+TGG + chr4.1:23746645-23746664 MS.gene26446:CDS 50.0%
GTAGGTTTCGGGAAAAGTGG+TGG - chr4.1:23747053-23747072 None:intergenic 50.0%
TCTCTAACTGGTGGAGGAGT+AGG + chr4.1:23746618-23746637 MS.gene26446:CDS 50.0%
! ACAGCTCCTGTTACTTCTCC+AGG + chr4.1:23747185-23747204 MS.gene26446:CDS 50.0%
! GTTCCTGGTGTTGGAATGCA+TGG + chr4.1:23747143-23747162 MS.gene26446:CDS 50.0%
! TCCGGCGACATTTTACTTCC+TGG - chr4.1:23747206-23747225 None:intergenic 50.0%
!!! GAGGAGTTTTTGGTGAGAGC+TGG + chr4.1:23746807-23746826 MS.gene26446:CDS 50.0%
ACTGGTGGAGGAGTAGGAGA+AGG + chr4.1:23746624-23746643 MS.gene26446:CDS 55.0%
AGAATCAGCTGCGAGGTCAC+GGG + chr4.1:23747355-23747374 MS.gene26446:CDS 55.0%
GAGAATCAGCTGCGAGGTCA+CGG + chr4.1:23747354-23747373 MS.gene26446:CDS 55.0%
GGCCTACACTGTTGAACTGG+AGG + chr4.1:23747630-23747649 MS.gene26446:intron 55.0%
GGTTTCGGGAAAAGTGGTGG+CGG - chr4.1:23747050-23747069 None:intergenic 55.0%
! CAAAGCACCATTGGGGGAGT+TGG + chr4.1:23746519-23746538 MS.gene26446:CDS 55.0%
GAGGTCACGGGCTCGCAAAC+AGG + chr4.1:23747367-23747386 MS.gene26446:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 23746423 23747892 23746423 ID=MS.gene26446
chr4.1 mRNA 23746423 23747892 23746423 ID=MS.gene26446.t1;Parent=MS.gene26446
chr4.1 exon 23746423 23747388 23746423 ID=MS.gene26446.t1.exon1;Parent=MS.gene26446.t1
chr4.1 CDS 23746423 23747388 23746423 ID=cds.MS.gene26446.t1;Parent=MS.gene26446.t1
chr4.1 exon 23747631 23747702 23747631 ID=MS.gene26446.t1.exon2;Parent=MS.gene26446.t1
chr4.1 CDS 23747631 23747702 23747631 ID=cds.MS.gene26446.t1;Parent=MS.gene26446.t1
chr4.1 exon 23747800 23747892 23747800 ID=MS.gene26446.t1.exon3;Parent=MS.gene26446.t1
chr4.1 CDS 23747800 23747892 23747800 ID=cds.MS.gene26446.t1;Parent=MS.gene26446.t1
Gene Sequence

>MS.gene26446

ATGAACTTCGCTTGGGATGCAATGAGTGTGAAGACACCTGGAAGTGTTAATCTAGCAAGCCAGTCTTCAATATACTCCCTCACTTTTGATGAGTTACAAAGCACCATTGGGGGAGTTGGAAAAGATTTTGGATCAATGAACATGGATGAACTCTTGAAAAACATATGGAATGTTGAAGAGACTCAAGCATTGACATCTCTAACTGGTGGAGGAGTAGGAGAAGGACCTAACAACCCAAATGGTGGTAGTTTGCAAAAACAAGGTTCATTGACATTGCCAAGGACACTTAGTCAGAGAAAAGTTGATGAAGTTTGGAGGGATTTGATGAAAGATAGTGGTTCATCTATGCCTCAAAGACAACCAACATTAGGTGAAGTGACTTTGGAGGAGTTTTTGGTGAGAGCTGGTGTTGTGAAAGAAGATACGCCTAATCATGCTCAACAAATTGAAAGACCAAATAATAATGAATGGTTTAGTGACTTCTCTAGATCAAACAATAACACCAATCTACTTGGCTTTCAACAACCAAATGGAAATAATGGGGATATGAGTGACAACAATAACTTAGTTCCTAAACATGTTCCTCTTCCTCCTTCATCAATTAACTTGAATCACTCTCAACGGCCGCCACCACTTTTCCCGAAACCTACAACTGTAGCATTTTCTTCTCCTATTCATTTGCTAAACAATGCTCAACTTGGTAACAATGGCAGAAGTGTAGTTCCTGGTGTTGGAATGCATGGTTTATCTGCCTCAAATGTCACAGCTCCTGTTACTTCTCCAGGAAGTAAAATGTCGCCGGATTTGATTACAAAGCGTAATTTAGACCCTACTTTACTGTCACCAGTTCCTTATGCAATCAACAGAGGGAGGAAGTGTGTTCCTGTAGAAAAAGGTGTTGAAAGGAGACAGAAGAGAATGATAAAGAATAGAGAATCAGCTGCGAGGTCACGGGCTCGCAAACAGGTTAGCATTTCATTTTAGTCATTTATGCATTCTTGTCAATATGAAGAAAATTTAACCATCTGTTTTGTTTCTCTGATCAGAATGATTAAGCTTGTTAAGTTCATTCGTTATTGTCCTTCAATACACATATAATGTATAACAAGATCATAAGCTTAAGGAAATTATTCAAAGTATTAAAATGATGTAAGCATTGGCTTATAATGTACATAACTTCTAAATATTTGTTTCTTTTGAATGGAAAGGCCTACACTGTTGAACTGGAGGCTGAAGTTGCAAAACTTAAGGAAGTAAACGAGGAATTACAAAGAAAACAGGTATGTTAGATTGTCATTTTGCGCTGCATTCTCATCAGTAATATGTTCACTAAGGTTTTTTTTTTTACAGTTTCTGACTACATTTGGTATGATACAGGCAGAGTTTATGGAAATGCAGAAAAGTAAGGAGGATCTGGTGCGGACAAATAAAATAAAATACTTGAGAAGGACACTTACAGGTCCATGGTAG
Protein sequence

>MS.gene26446.t1

MNFAWDAMSVKTPGSVNLASQSSIYSLTFDELQSTIGGVGKDFGSMNMDELLKNIWNVEETQALTSLTGGGVGEGPNNPNGGSLQKQGSLTLPRTLSQRKVDEVWRDLMKDSGSSMPQRQPTLGEVTLEEFLVRAGVVKEDTPNHAQQIERPNNNEWFSDFSRSNNNTNLLGFQQPNGNNGDMSDNNNLVPKHVPLPPSSINLNHSQRPPPLFPKPTTVAFSSPIHLLNNAQLGNNGRSVVPGVGMHGLSASNVTAPVTSPGSKMSPDLITKRNLDPTLLSPVPYAINRGRKCVPVEKGVERRQKRMIKNRESAARSRARKQAYTVELEAEVAKLKEVNEELQRKQAEFMEMQKSKEDLVRTNKIKYLRRTLTGPW