Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26459.t1 | XP_003607938.1 | 85.9 | 305 | 39 | 2 | 1 | 301 | 1 | 305 | 8.10E-127 | 463.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26459.t1 | Q9FXA3 | 37.1 | 132 | 64 | 4 | 175 | 297 | 181 | 302 | 7.4e-12 | 72.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26459.t1 | G7JK25 | 85.9 | 305 | 39 | 2 | 1 | 301 | 1 | 305 | 5.9e-127 | 463.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26459.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26459.t1 | MTR_4g085700 | 91.803 | 305 | 21 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
| MS.gene26459.t1 | MTR_4g085660 | 88.197 | 305 | 31 | 3 | 1 | 301 | 1 | 304 | 1.40e-179 | 497 |
| MS.gene26459.t1 | MTR_4g081980 | 44.333 | 300 | 130 | 7 | 1 | 296 | 1 | 267 | 5.85e-57 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26459.t1 | AT1G49770 | 43.519 | 216 | 84 | 5 | 88 | 275 | 70 | 275 | 9.01e-42 | 146 |
Find 61 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGATTCCTTCTTTC+TGG | 0.014189 | 4.1:+23868822 | None:intergenic |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.247562 | 4.1:-23868618 | MS.gene26459:intron |
| CCTAAGTTATGATTAGAGTT+TGG | 0.258500 | 4.1:+23868881 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4.1:+23867255 | None:intergenic |
| TGGAAACTTCTACATGATTA+TGG | 0.312756 | 4.1:-23866972 | MS.gene26459:CDS |
| CTAAGTTATGATTAGAGTTT+GGG | 0.313394 | 4.1:+23868882 | None:intergenic |
| AAATGAATTTATACCTTAGA+AGG | 0.315805 | 4.1:+23868605 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.328467 | 4.1:+23868830 | None:intergenic |
| ATGTTCAAACAAATTTCATT+TGG | 0.345668 | 4.1:-23868928 | MS.gene26459:CDS |
| TGTTCAAACAAATTTCATTT+GGG | 0.373120 | 4.1:-23868927 | MS.gene26459:CDS |
| TATACCTTAGAAGGAAGTTC+AGG | 0.398193 | 4.1:+23868614 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.400979 | 4.1:-23867050 | MS.gene26459:CDS |
| GACCACAATTGCTTTGGTGC+TGG | 0.421423 | 4.1:-23867044 | MS.gene26459:CDS |
| CCGATTTCTCTTCTTGCTCA+CGG | 0.425778 | 4.1:+23868790 | None:intergenic |
| CCGTGAGCAAGAAGAGAAAT+CGG | 0.430632 | 4.1:-23868790 | MS.gene26459:CDS |
| CGATTTCTCTTCTTGCTCAC+GGG | 0.436559 | 4.1:+23868791 | None:intergenic |
| AACATTATGTGCAATGCAAA+TGG | 0.441341 | 4.1:-23866992 | MS.gene26459:CDS |
| AGTGAGAATAATATTGCAAC+TGG | 0.447083 | 4.1:-23868749 | MS.gene26459:CDS |
| CTCAAATCTGTATCCCCACT+TGG | 0.456632 | 4.1:-23867313 | MS.gene26459:CDS |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4.1:-23868667 | MS.gene26459:CDS |
| CGTGAGCAAGAAGAGAAATC+GGG | 0.482173 | 4.1:-23868789 | MS.gene26459:CDS |
| AGGTGAGAGTAGCAAACAAT+TGG | 0.494891 | 4.1:-23868861 | MS.gene26459:CDS |
| CTCCAGCACCAAAGCAATTG+TGG | 0.505022 | 4.1:+23867042 | None:intergenic |
| ATTTGCATTGCACATAATGT+TGG | 0.516349 | 4.1:+23866994 | None:intergenic |
| CCAAACTCTAATCATAACTT+AGG | 0.519326 | 4.1:-23868881 | MS.gene26459:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4.1:+23867256 | None:intergenic |
| TCATTTGGGAAAATCATCCA+TGG | 0.525272 | 4.1:-23868913 | MS.gene26459:CDS |
| CAGAAAGAAGGAATCAATGA+AGG | 0.527899 | 4.1:-23868821 | MS.gene26459:CDS |
| AAACCTACATGTTGTGGTGG+AGG | 0.530627 | 4.1:+23867157 | None:intergenic |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4.1:-23867264 | MS.gene26459:CDS |
| CATTTGGGAAAATCATCCAT+GGG | 0.537456 | 4.1:-23868912 | MS.gene26459:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4.1:-23867073 | MS.gene26459:CDS |
| CAGGCAAAACAAGCTTCACA+TGG | 0.544546 | 4.1:-23866822 | MS.gene26459:CDS |
| CAAGAAGAGAAATCGGGGTG+GGG | 0.550377 | 4.1:-23868783 | MS.gene26459:CDS |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4.1:-23867241 | MS.gene26459:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4.1:+23868630 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4.1:+23868622 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4.1:-23868682 | MS.gene26459:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4.1:-23868833 | MS.gene26459:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4.1:+23867055 | None:intergenic |
| GCAAGAAGAGAAATCGGGGT+GGG | 0.581863 | 4.1:-23868784 | MS.gene26459:CDS |
| CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4.1:+23867216 | None:intergenic |
| TTGATCATGATCTACACTCA+TGG | 0.585566 | 4.1:+23868952 | None:intergenic |
| TTCACATGGCGCAAACTCGA+TGG | 0.594689 | 4.1:-23866808 | MS.gene26459:CDS |
| TTACCTCCACCACAACATGT+AGG | 0.611747 | 4.1:-23867160 | MS.gene26459:CDS |
| CTTCACTGCTGCATCCACAA+TGG | 0.612064 | 4.1:+23867393 | None:intergenic |
| CAGATGACTCACTCCCAAGT+GGG | 0.612302 | 4.1:+23867299 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4.1:-23867263 | MS.gene26459:CDS |
| TCAAATCTGTATCCCCACTT+GGG | 0.618216 | 4.1:-23867312 | MS.gene26459:CDS |
| GGCTGATAAATCAACCATTG+TGG | 0.629857 | 4.1:-23867407 | MS.gene26459:CDS |
| ACATGGCGCAAACTCGATGG+AGG | 0.652836 | 4.1:-23866805 | MS.gene26459:CDS |
| TTAAAACCTACATGTTGTGG+TGG | 0.654855 | 4.1:+23867154 | None:intergenic |
| AATGTTGTACTGAACATATG+TGG | 0.655921 | 4.1:-23867115 | MS.gene26459:CDS |
| CAGCTTTAGAAGTTATGACG+CGG | 0.659283 | 4.1:-23866767 | MS.gene26459:CDS |
| GAGTTTGGGAGATCATCCCA+TGG | 0.666665 | 4.1:+23868896 | None:intergenic |
| ACAGATGACTCACTCCCAAG+TGG | 0.674383 | 4.1:+23867298 | None:intergenic |
| AGATGACTCACTCCCAAGTG+GGG | 0.684740 | 4.1:+23867300 | None:intergenic |
| GTGAGCAAGAAGAGAAATCG+GGG | 0.694598 | 4.1:-23868788 | MS.gene26459:CDS |
| AGCAAGAAGAGAAATCGGGG+TGG | 0.706863 | 4.1:-23868785 | MS.gene26459:CDS |
| CATCTGTAATCAACTCACAG+TGG | 0.763842 | 4.1:-23867282 | MS.gene26459:CDS |
| GTTGTACTGAACATATGTGG+TGG | 0.767818 | 4.1:-23867112 | MS.gene26459:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAGTTCAATAATCA+AGG | + | chr4.1:23867592-23867611 | None:intergenic | 15.0% |
| !! | GATATTAAAAAATGATAAAG+AGG | + | chr4.1:23868793-23868812 | None:intergenic | 15.0% |
| !! | TAAAAATCTTGAAGAAATTA+AGG | - | chr4.1:23868349-23868368 | MS.gene26459:intron | 15.0% |
| !! | TGATAGTATTCATTTATTTA+GGG | - | chr4.1:23867968-23867987 | MS.gene26459:intron | 15.0% |
| !!! | ACTGAAATAAATAATTTTCT+TGG | - | chr4.1:23868170-23868189 | MS.gene26459:intron | 15.0% |
| !!! | ATGATTTTGATAAACTTTAA+GGG | + | chr4.1:23867215-23867234 | None:intergenic | 15.0% |
| !!! | ATTTGATTTTGATATTTTAC+AGG | - | chr4.1:23868286-23868305 | MS.gene26459:intron | 15.0% |
| !!! | TATGATTTTGATAAACTTTA+AGG | + | chr4.1:23867216-23867235 | None:intergenic | 15.0% |
| !!! | TTGATAGTATTCATTTATTT+AGG | - | chr4.1:23867967-23867986 | MS.gene26459:intron | 15.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | + | chr4.1:23867112-23867131 | None:intergenic | 20.0% |
| !! | ATGTTCAAACAAATTTCATT+TGG | - | chr4.1:23866786-23866805 | MS.gene26459:CDS | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | + | chr4.1:23868501-23868520 | None:intergenic | 20.0% |
| !! | CTACAATTACTTATTTACTA+AGG | - | chr4.1:23868253-23868272 | MS.gene26459:intron | 20.0% |
| !! | GCAAATACAAAAATGTATTT+AGG | - | chr4.1:23867277-23867296 | MS.gene26459:CDS | 20.0% |
| !! | GGACACAATAAAAAAAAAAA+TGG | - | chr4.1:23867890-23867909 | MS.gene26459:intron | 20.0% |
| !! | TGTTCAAACAAATTTCATTT+GGG | - | chr4.1:23866787-23866806 | MS.gene26459:CDS | 20.0% |
| !!! | GAAATAAATAATTTTCTTGG+AGG | - | chr4.1:23868173-23868192 | MS.gene26459:intron | 20.0% |
| !!! | TGATTTTGATAAACTTTAAG+GGG | + | chr4.1:23867214-23867233 | None:intergenic | 20.0% |
| ! | AAAATTTAAGTCAATGGCAT+TGG | - | chr4.1:23868120-23868139 | MS.gene26459:intron | 25.0% |
| ! | CAATTGTCAGTTAAATCTTA+CGG | - | chr4.1:23867838-23867857 | MS.gene26459:intron | 25.0% |
| ! | CCTAAGAAAATTTAAGTCAA+TGG | - | chr4.1:23868114-23868133 | MS.gene26459:intron | 25.0% |
| ! | CTAAGTTATGATTAGAGTTT+GGG | + | chr4.1:23866835-23866854 | None:intergenic | 25.0% |
| ! | TCATATTGTAACTCAATTGT+TGG | + | chr4.1:23867802-23867821 | None:intergenic | 25.0% |
| !! | CATTTTTGTATTTGCCAAAT+CGG | + | chr4.1:23867272-23867291 | None:intergenic | 25.0% |
| !! | TTTCTATATCTTTTCCGATT+TGG | - | chr4.1:23867255-23867274 | MS.gene26459:CDS | 25.0% |
| !!! | AACATGTAGGTTTTAAAACA+TGG | - | chr4.1:23868567-23868586 | MS.gene26459:intron | 25.0% |
| !!! | CCATTGACTTAAATTTTCTT+AGG | + | chr4.1:23868117-23868136 | None:intergenic | 25.0% |
| !!! | CTTTTCAAGTGAGAATATAA+TGG | + | chr4.1:23867916-23867935 | None:intergenic | 25.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4.1:23868785-23868804 | None:intergenic | 30.0% | |
| AAACAACACTCATATAAGCT+AGG | - | chr4.1:23867373-23867392 | MS.gene26459:CDS | 30.0% | |
| AAATAAAGACTTCAAGTCCA+TGG | + | chr4.1:23868014-23868033 | None:intergenic | 30.0% | |
| AACAACACTCATATAAGCTA+GGG | - | chr4.1:23867374-23867393 | MS.gene26459:CDS | 30.0% | |
| AACATTATGTGCAATGCAAA+TGG | - | chr4.1:23868722-23868741 | MS.gene26459:CDS | 30.0% | |
| AATAAAGACTTCAAGTCCAT+GGG | + | chr4.1:23868013-23868032 | None:intergenic | 30.0% | |
| AATGTTGTACTGAACATATG+TGG | - | chr4.1:23868599-23868618 | MS.gene26459:intron | 30.0% | |
| ACCAAACAATTGAACTTAAG+TGG | + | chr4.1:23867745-23867764 | None:intergenic | 30.0% | |
| ACCACTTAAGTTCAATTGTT+TGG | - | chr4.1:23867741-23867760 | MS.gene26459:intron | 30.0% | |
| AGTGAGAATAATATTGCAAC+TGG | - | chr4.1:23866965-23866984 | MS.gene26459:intron | 30.0% | |
| ATTTGCATTGCACATAATGT+TGG | + | chr4.1:23868723-23868742 | None:intergenic | 30.0% | |
| CCAAACTCTAATCATAACTT+AGG | - | chr4.1:23866833-23866852 | MS.gene26459:intron | 30.0% | |
| CCTAAGTTATGATTAGAGTT+TGG | + | chr4.1:23866836-23866855 | None:intergenic | 30.0% | |
| TAGTTAAAGAGATTAGAGAG+TGG | - | chr4.1:23867869-23867888 | MS.gene26459:intron | 30.0% | |
| TGGAAACTTCTACATGATTA+TGG | - | chr4.1:23868742-23868761 | MS.gene26459:CDS | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4.1:23867032-23867051 | MS.gene26459:CDS | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4.1:23868768-23868787 | None:intergenic | 30.0% |
| ! | GATAAACTTTAAGGGGAAAA+AGG | + | chr4.1:23867207-23867226 | None:intergenic | 30.0% |
| !!! | GTTTTAAAACCTACATGTTG+TGG | + | chr4.1:23868566-23868585 | None:intergenic | 30.0% |
| !!! | TTGAATTGTGTTGATTTTGC+AGG | - | chr4.1:23868873-23868892 | MS.gene26459:CDS | 30.0% |
| !!! | TTTTTTTAGCCTGATCAAGA+AGG | + | chr4.1:23867346-23867365 | None:intergenic | 30.0% |
| AAAATCGATCCATTCAGGAA+TGG | - | chr4.1:23867674-23867693 | MS.gene26459:intron | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4.1:23866881-23866900 | MS.gene26459:intron | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4.1:23868461-23868480 | None:intergenic | 35.0% | |
| ATCCTTCTTGTTACCATAGA+TGG | - | chr4.1:23867503-23867522 | MS.gene26459:intron | 35.0% | |
| ATCTAGCTAGGGTTCTTAAA+GGG | - | chr4.1:23867449-23867468 | MS.gene26459:intron | 35.0% | |
| CAGAAAGAAGGAATCAATGA+AGG | - | chr4.1:23866893-23866912 | MS.gene26459:intron | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4.1:23866802-23866821 | MS.gene26459:CDS | 35.0% | |
| CTCGTATACAATGTCAAACT+TGG | - | chr4.1:23867534-23867553 | MS.gene26459:intron | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4.1:23867047-23867066 | MS.gene26459:CDS | 35.0% | |
| GTGGTTAATGAATTCCACAA+AGG | + | chr4.1:23867726-23867745 | None:intergenic | 35.0% | |
| TACCAAAAATCGATCCATTC+AGG | - | chr4.1:23867669-23867688 | MS.gene26459:intron | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | + | chr4.1:23867103-23867122 | None:intergenic | 35.0% | |
| TCAGTTAAATCTTACGGTTG+AGG | - | chr4.1:23867844-23867863 | MS.gene26459:intron | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4.1:23866801-23866820 | MS.gene26459:CDS | 35.0% | |
| TCCTTCTTGTTACCATAGAT+GGG | - | chr4.1:23867504-23867523 | MS.gene26459:intron | 35.0% | |
| TTAAAACCTACATGTTGTGG+TGG | + | chr4.1:23868563-23868582 | None:intergenic | 35.0% | |
| TTGATCATGATCTACACTCA+TGG | + | chr4.1:23866765-23866784 | None:intergenic | 35.0% | |
| TTTAAGAACCCTAGCTAGAT+GGG | + | chr4.1:23867449-23867468 | None:intergenic | 35.0% | |
| ! | ATTTAAGTCAATGGCATTGG+TGG | - | chr4.1:23868123-23868142 | MS.gene26459:intron | 35.0% |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4.1:23868769-23868788 | None:intergenic | 35.0% |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4.1:23866887-23866906 | None:intergenic | 35.0% |
| !! | CTTCATTGATTCCTTCTTTC+TGG | + | chr4.1:23866895-23866914 | None:intergenic | 35.0% |
| !! | TTCCTGAATGGATCGATTTT+TGG | + | chr4.1:23867674-23867693 | None:intergenic | 35.0% |
| AAAGGGGCAATAGATCTACT+AGG | - | chr4.1:23867466-23867485 | MS.gene26459:intron | 40.0% | |
| AAGGGGCAATAGATCTACTA+GGG | - | chr4.1:23867467-23867486 | MS.gene26459:intron | 40.0% | |
| ACCTGAATTCCATTCCTGAA+TGG | + | chr4.1:23867686-23867705 | None:intergenic | 40.0% | |
| AGGTGAGAGTAGCAAACAAT+TGG | - | chr4.1:23866853-23866872 | MS.gene26459:intron | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4.1:23868641-23868660 | MS.gene26459:CDS | 40.0% | |
| CATCTAGCTAGGGTTCTTAA+AGG | - | chr4.1:23867448-23867467 | MS.gene26459:intron | 40.0% | |
| CATCTGTAATCAACTCACAG+TGG | - | chr4.1:23868432-23868451 | MS.gene26459:intron | 40.0% | |
| CCTTCTTGTTACCATAGATG+GGG | - | chr4.1:23867505-23867524 | MS.gene26459:intron | 40.0% | |
| GAACTTTCTCCTTCTTGATC+AGG | - | chr4.1:23867334-23867353 | MS.gene26459:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4.1:23868462-23868481 | None:intergenic | 40.0% | |
| GGCTGATAAATCAACCATTG+TGG | - | chr4.1:23868307-23868326 | MS.gene26459:intron | 40.0% | |
| GTTGTACTGAACATATGTGG+TGG | - | chr4.1:23868602-23868621 | MS.gene26459:intron | 40.0% | |
| TCAAATCTGTATCCCCACTT+GGG | - | chr4.1:23868402-23868421 | MS.gene26459:intron | 40.0% | |
| TCCATTCAGGAATGGAATTC+AGG | - | chr4.1:23867682-23867701 | MS.gene26459:intron | 40.0% | |
| TCTAGCTAGGGTTCTTAAAG+GGG | - | chr4.1:23867450-23867469 | MS.gene26459:intron | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4.1:23868664-23868683 | MS.gene26459:CDS | 40.0% | |
| TCTTTGTGTCAACCTCAGTT+CGG | - | chr4.1:23867626-23867645 | MS.gene26459:intron | 40.0% | |
| TGAATTCCACAAAGGACGAA+TGG | + | chr4.1:23867718-23867737 | None:intergenic | 40.0% | |
| TTAAGAACCCTAGCTAGATG+GGG | + | chr4.1:23867448-23867467 | None:intergenic | 40.0% | |
| ! | CTTTAAGAACCCTAGCTAGA+TGG | + | chr4.1:23867450-23867469 | None:intergenic | 40.0% |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4.1:23868473-23868492 | MS.gene26459:intron | 40.0% |
| !! | CAGCTTTAGAAGTTATGACG+CGG | - | chr4.1:23868947-23868966 | MS.gene26459:CDS | 40.0% |
| AAACCTACATGTTGTGGTGG+AGG | + | chr4.1:23868560-23868579 | None:intergenic | 45.0% | |
| AAGACTTCAAGTCCATGGGT+TGG | + | chr4.1:23868009-23868028 | None:intergenic | 45.0% | |
| ACAGTATTAGAGCCAACCCA+TGG | - | chr4.1:23867994-23868013 | MS.gene26459:intron | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4.1:23867095-23867114 | None:intergenic | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4.1:23868450-23868469 | MS.gene26459:intron | 45.0% | |
| CAGGCAAAACAAGCTTCACA+TGG | - | chr4.1:23868892-23868911 | MS.gene26459:CDS | 45.0% | |
| CCCCATCTATGGTAACAAGA+AGG | + | chr4.1:23867508-23867527 | None:intergenic | 45.0% | |
| CCGATTTCTCTTCTTGCTCA+CGG | + | chr4.1:23866927-23866946 | None:intergenic | 45.0% | |
| CCGTGAGCAAGAAGAGAAAT+CGG | - | chr4.1:23866924-23866943 | MS.gene26459:intron | 45.0% | |
| CGATTTCTCTTCTTGCTCAC+GGG | + | chr4.1:23866926-23866945 | None:intergenic | 45.0% | |
| CGTGAGCAAGAAGAGAAATC+GGG | - | chr4.1:23866925-23866944 | MS.gene26459:intron | 45.0% | |
| CTCAAATCTGTATCCCCACT+TGG | - | chr4.1:23868401-23868420 | MS.gene26459:intron | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4.1:23867096-23867115 | MS.gene26459:CDS | 45.0% | |
| GTGAGCAAGAAGAGAAATCG+GGG | - | chr4.1:23866926-23866945 | MS.gene26459:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4.1:23868451-23868470 | MS.gene26459:intron | 45.0% | |
| TAAAAGCCCCCATCTAGCTA+GGG | - | chr4.1:23867438-23867457 | MS.gene26459:intron | 45.0% | |
| TAAGAACCCTAGCTAGATGG+GGG | + | chr4.1:23867447-23867466 | None:intergenic | 45.0% | |
| TCTGAACCATTCGTCCTTTG+TGG | - | chr4.1:23867709-23867728 | MS.gene26459:intron | 45.0% | |
| TGTTACCATAGATGGGGATC+TGG | - | chr4.1:23867511-23867530 | MS.gene26459:intron | 45.0% | |
| TTAAAAGCCCCCATCTAGCT+AGG | - | chr4.1:23867437-23867456 | MS.gene26459:intron | 45.0% | |
| TTACCTCCACCACAACATGT+AGG | - | chr4.1:23868554-23868573 | MS.gene26459:intron | 45.0% | |
| ! | TAGCTAGATGGGGGCTTTTA+AGG | + | chr4.1:23867438-23867457 | None:intergenic | 45.0% |
| ACAGATGACTCACTCCCAAG+TGG | + | chr4.1:23868419-23868438 | None:intergenic | 50.0% | |
| AGATGACTCACTCCCAAGTG+GGG | + | chr4.1:23868417-23868436 | None:intergenic | 50.0% | |
| AGCAAGAAGAGAAATCGGGG+TGG | - | chr4.1:23866929-23866948 | MS.gene26459:intron | 50.0% | |
| CAAGAAGAGAAATCGGGGTG+GGG | - | chr4.1:23866931-23866950 | MS.gene26459:intron | 50.0% | |
| CAGATGACTCACTCCCAAGT+GGG | + | chr4.1:23868418-23868437 | None:intergenic | 50.0% | |
| CTCCAGCACCAAAGCAATTG+TGG | + | chr4.1:23868675-23868694 | None:intergenic | 50.0% | |
| CTTACTTCACGACCGAACTG+AGG | + | chr4.1:23867641-23867660 | None:intergenic | 50.0% | |
| CTTCACTGCTGCATCCACAA+TGG | + | chr4.1:23868324-23868343 | None:intergenic | 50.0% | |
| GAGTTTGGGAGATCATCCCA+TGG | + | chr4.1:23866821-23866840 | None:intergenic | 50.0% | |
| GCAAGAAGAGAAATCGGGGT+GGG | - | chr4.1:23866930-23866949 | MS.gene26459:intron | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4.1:23868662-23868681 | None:intergenic | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4.1:23867087-23867106 | None:intergenic | 50.0% | |
| TTCACATGGCGCAAACTCGA+TGG | - | chr4.1:23868906-23868925 | MS.gene26459:CDS | 50.0% | |
| ! | GACCACAATTGCTTTGGTGC+TGG | - | chr4.1:23868670-23868689 | MS.gene26459:CDS | 50.0% |
| ACATGGCGCAAACTCGATGG+AGG | - | chr4.1:23868909-23868928 | MS.gene26459:CDS | 55.0% | |
| ACGAGCCAGATCCCCATCTA+TGG | + | chr4.1:23867519-23867538 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 23866758 | 23868978 | 23866758 | ID=MS.gene26459 |
| chr4.1 | mRNA | 23866758 | 23868978 | 23866758 | ID=MS.gene26459.t1;Parent=MS.gene26459 |
| chr4.1 | exon | 23868619 | 23868978 | 23868619 | ID=MS.gene26459.t1.exon1;Parent=MS.gene26459.t1 |
| chr4.1 | CDS | 23868619 | 23868978 | 23868619 | ID=cds.MS.gene26459.t1;Parent=MS.gene26459.t1 |
| chr4.1 | exon | 23866967 | 23867428 | 23866967 | ID=MS.gene26459.t1.exon2;Parent=MS.gene26459.t1 |
| chr4.1 | CDS | 23866967 | 23867428 | 23866967 | ID=cds.MS.gene26459.t1;Parent=MS.gene26459.t1 |
| chr4.1 | exon | 23866758 | 23866841 | 23866758 | ID=MS.gene26459.t1.exon3;Parent=MS.gene26459.t1 |
| chr4.1 | CDS | 23866758 | 23866841 | 23866758 | ID=cds.MS.gene26459.t1;Parent=MS.gene26459.t1 |
| Gene Sequence |
| Protein sequence |
