Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26461.t1 | XP_003607934.1 | 85.9 | 306 | 41 | 1 | 1 | 306 | 1 | 304 | 3.20E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26461.t1 | Q9FXA3 | 34.8 | 138 | 72 | 4 | 175 | 306 | 181 | 306 | 1.1e-10 | 68.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26461.t1 | G7JK21 | 85.9 | 306 | 41 | 1 | 1 | 306 | 1 | 304 | 2.3e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26461.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26461.t1 | MTR_4g085660 | 93.464 | 306 | 18 | 1 | 1 | 306 | 1 | 304 | 0.0 | 541 |
| MS.gene26461.t1 | MTR_4g085700 | 89.251 | 307 | 30 | 2 | 1 | 306 | 1 | 305 | 0.0 | 505 |
| MS.gene26461.t1 | MTR_4g081980 | 44.918 | 305 | 126 | 9 | 1 | 301 | 1 | 267 | 7.75e-58 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26461.t1 | AT1G49770 | 33.537 | 328 | 155 | 9 | 12 | 306 | 9 | 306 | 1.53e-42 | 149 |
Find 62 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTGATTCCTTCTTTC+TGG | 0.071265 | 4.1:+23887746 | None:intergenic |
| TCACCTAAATTATCAGAATT+TGG | 0.105182 | 4.1:+23887805 | None:intergenic |
| TGAAAATTTCTACATGATTA+TGG | 0.218947 | 4.1:-23886528 | MS.gene26461:CDS |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.231106 | 4.1:-23887542 | MS.gene26461:intron |
| CTCCCAAATTCTGATAATTT+AGG | 0.240479 | 4.1:-23887808 | MS.gene26461:CDS |
| GAAAATGAATTTACCTTAGA+AGG | 0.295761 | 4.1:+23887529 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4.1:+23886826 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.303231 | 4.1:+23887754 | None:intergenic |
| CACCTAAATTATCAGAATTT+GGG | 0.327226 | 4.1:+23887806 | None:intergenic |
| CTCAAATGTGTATCCCCATT+TGG | 0.335851 | 4.1:-23886884 | MS.gene26461:CDS |
| AAACCTACTTGTTGCATTTG+AGG | 0.351914 | 4.1:+23886713 | None:intergenic |
| GTGTTCAGACAGGTTTCATT+TGG | 0.354346 | 4.1:-23887852 | MS.gene26461:CDS |
| GAAAATGCATTAATATTTGA+AGG | 0.369535 | 4.1:+23886740 | None:intergenic |
| TTTACCTTAGAAGGAAGTTC+AGG | 0.386490 | 4.1:+23887538 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.410651 | 4.1:-23886606 | MS.gene26461:CDS |
| TCAAATGTGTATCCCCATTT+GGG | 0.412830 | 4.1:-23886883 | MS.gene26461:CDS |
| TGTTCAGACAGGTTTCATTT+GGG | 0.442568 | 4.1:-23887851 | MS.gene26461:CDS |
| TGGTGAGGAAGAAGAGAAAC+CGG | 0.451961 | 4.1:-23887714 | MS.gene26461:CDS |
| CAGATGACTCACTCCCAAAT+GGG | 0.455516 | 4.1:+23886870 | None:intergenic |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4.1:-23887591 | MS.gene26461:CDS |
| ACAGATGACTCACTCCCAAA+TGG | 0.463724 | 4.1:+23886869 | None:intergenic |
| TTGAAAAGAAGAAGCAAGAA+AGG | 0.480003 | 4.1:-23886907 | MS.gene26461:CDS |
| GAAACATACAAGCATGCGGC+TGG | 0.489565 | 4.1:-23886198 | MS.gene26461:CDS |
| CATGATCAAGGTGTTCAGAC+AGG | 0.491804 | 4.1:-23887862 | MS.gene26461:CDS |
| CTCCAACACCAAAGCAATTG+TGG | 0.500537 | 4.1:+23886598 | None:intergenic |
| CATTTGGGAAAATCATCCAT+GGG | 0.506047 | 4.1:-23887836 | MS.gene26461:CDS |
| TCATTTGGGAAAATCATCCA+TGG | 0.517340 | 4.1:-23887837 | MS.gene26461:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4.1:+23886827 | None:intergenic |
| GACCACAATTGCTTTGGTGT+TGG | 0.522135 | 4.1:-23886600 | MS.gene26461:CDS |
| GAAGAAGAGAAACCGGGGTG+GGG | 0.528579 | 4.1:-23887707 | MS.gene26461:CDS |
| AATCAACGAAGGAGATGCTC+TGG | 0.530071 | 4.1:-23887734 | MS.gene26461:CDS |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4.1:-23886835 | MS.gene26461:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4.1:-23886629 | MS.gene26461:CDS |
| CTTCATTGCTGCATCTACAA+TGG | 0.548628 | 4.1:+23886964 | None:intergenic |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4.1:-23886812 | MS.gene26461:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4.1:+23887554 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4.1:+23887546 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4.1:-23887606 | MS.gene26461:CDS |
| ATTTGCATTGCACATGATGT+TGG | 0.560264 | 4.1:+23886550 | None:intergenic |
| GGAAGAAGAGAAACCGGGGT+GGG | 0.561203 | 4.1:-23887708 | MS.gene26461:CDS |
| GGTGAGGAAGAAGAGAAACC+GGG | 0.561493 | 4.1:-23887713 | MS.gene26461:CDS |
| ACGTGACGCAAATTCAATGA+AGG | 0.564753 | 4.1:-23886220 | MS.gene26461:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4.1:-23887757 | MS.gene26461:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4.1:+23886611 | None:intergenic |
| ATACCTCAAATGCAACAAGT+AGG | 0.573192 | 4.1:-23886716 | MS.gene26461:CDS |
| CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4.1:+23886787 | None:intergenic |
| ATGAGTGTAGATCATGATCA+AGG | 0.591815 | 4.1:-23887874 | MS.gene26461:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.598595 | 4.1:+23887876 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4.1:-23886834 | MS.gene26461:CDS |
| ACGAAGGAGATGCTCTGGTG+AGG | 0.626356 | 4.1:-23887729 | MS.gene26461:CDS |
| AATGTTGTACTAAACATATG+TGG | 0.641101 | 4.1:-23886671 | MS.gene26461:CDS |
| TTCTAATTACAACCCCACCC+CGG | 0.641970 | 4.1:+23887695 | None:intergenic |
| CAGAAAGAAGGAATCAACGA+AGG | 0.651154 | 4.1:-23887745 | MS.gene26461:CDS |
| AGATGACTCACTCCCAAATG+GGG | 0.669367 | 4.1:+23886871 | None:intergenic |
| AGGAAGAAGAGAAACCGGGG+TGG | 0.676084 | 4.1:-23887709 | MS.gene26461:CDS |
| GAAGGAAACATACAAGCATG+CGG | 0.683731 | 4.1:-23886202 | MS.gene26461:CDS |
| CGGCTGGAGAAATTATGATG+TGG | 0.687301 | 4.1:-23886182 | MS.gene26461:CDS |
| ATTTGGGAAAATCATCCATG+GGG | 0.693011 | 4.1:-23887835 | MS.gene26461:CDS |
| GAATTTGGGAGATCACCCCA+TGG | 0.708355 | 4.1:+23887820 | None:intergenic |
| GTGAGGAAGAAGAGAAACCG+GGG | 0.716081 | 4.1:-23887712 | MS.gene26461:CDS |
| GTTGTACTAAACATATGTGG+TGG | 0.748360 | 4.1:-23886668 | MS.gene26461:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4.1:-23886853 | MS.gene26461:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTATATTTTAC+AGG | - | chr4.1:23887054-23887073 | MS.gene26461:intron | 10.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | - | chr4.1:23887638-23887657 | MS.gene26461:CDS | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | + | chr4.1:23887731-23887750 | None:intergenic | 15.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | + | chr4.1:23886629-23886648 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | + | chr4.1:23886813-23886832 | None:intergenic | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | + | chr4.1:23887269-23887288 | None:intergenic | 20.0% |
| !! | CATATAACAAAATGATAAAG+AGG | + | chr4.1:23887576-23887595 | None:intergenic | 20.0% |
| !! | GAAAATGCATTAATATTTGA+AGG | + | chr4.1:23887316-23887335 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | - | chr4.1:23887117-23887136 | MS.gene26461:intron | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | + | chr4.1:23886630-23886649 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | - | chr4.1:23887525-23887544 | MS.gene26461:intron | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | + | chr4.1:23887669-23887688 | None:intergenic | 20.0% |
| ! | AATGTTGTACTAAACATATG+TGG | - | chr4.1:23887382-23887401 | MS.gene26461:intron | 25.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | + | chr4.1:23886250-23886269 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | + | chr4.1:23886527-23886546 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | + | chr4.1:23886251-23886270 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | - | chr4.1:23887797-23887816 | MS.gene26461:CDS | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | + | chr4.1:23887664-23887683 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | - | chr4.1:23886988-23887007 | MS.gene26461:intron | 25.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4.1:23887568-23887587 | None:intergenic | 30.0% | |
| CTCCCAAATTCTGATAATTT+AGG | - | chr4.1:23886245-23886264 | MS.gene26461:intron | 30.0% | |
| TCCAAGTTTGACATTGTATT+CGG | + | chr4.1:23886759-23886778 | None:intergenic | 30.0% | |
| TTGAAAAGAAGAAGCAAGAA+AGG | - | chr4.1:23887146-23887165 | MS.gene26461:intron | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | - | chr4.1:23887350-23887369 | MS.gene26461:intron | 30.0% |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4.1:23886447-23886466 | MS.gene26461:intron | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4.1:23887551-23887570 | None:intergenic | 30.0% |
| !! | AAACATCTTCATTAGTCTTG+AGG | + | chr4.1:23887033-23887052 | None:intergenic | 30.0% |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4.1:23886296-23886315 | MS.gene26461:intron | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4.1:23887229-23887248 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | - | chr4.1:23887337-23887356 | MS.gene26461:intron | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | + | chr4.1:23886706-23886725 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | - | chr4.1:23886179-23886198 | MS.gene26461:CDS | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | + | chr4.1:23887506-23887525 | None:intergenic | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | - | chr4.1:23886218-23886237 | MS.gene26461:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4.1:23886217-23886236 | MS.gene26461:CDS | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | + | chr4.1:23886758-23886777 | None:intergenic | 35.0% | |
| CCACAAATGACGAATTGTTT+GGG | + | chr4.1:23886938-23886957 | None:intergenic | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | - | chr4.1:23886726-23886745 | MS.gene26461:CDS | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4.1:23886462-23886481 | MS.gene26461:intron | 35.0% | |
| GCTAAGTTATACTTACCTCA+CGG | + | chr4.1:23886878-23886897 | None:intergenic | 35.0% | |
| GTTGTACTAAACATATGTGG+TGG | - | chr4.1:23887385-23887404 | MS.gene26461:intron | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | - | chr4.1:23887170-23887189 | MS.gene26461:intron | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4.1:23886216-23886235 | MS.gene26461:CDS | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | + | chr4.1:23886939-23886958 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | - | chr4.1:23886725-23886744 | MS.gene26461:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | - | chr4.1:23886202-23886221 | MS.gene26461:CDS | 35.0% | |
| TTGATCATGATCTACACTCA+TGG | + | chr4.1:23886180-23886199 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | - | chr4.1:23886852-23886871 | MS.gene26461:CDS | 35.0% | |
| TTTACCTTAGAAGGAAGTTC+AGG | + | chr4.1:23886518-23886537 | None:intergenic | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | + | chr4.1:23887343-23887362 | None:intergenic | 35.0% |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4.1:23887552-23887571 | None:intergenic | 35.0% |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4.1:23886302-23886321 | None:intergenic | 35.0% |
| ACGTGACGCAAATTCAATGA+AGG | - | chr4.1:23887833-23887852 | MS.gene26461:CDS | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4.1:23887424-23887443 | MS.gene26461:intron | 40.0% | |
| CAGAAAGAAGGAATCAACGA+AGG | - | chr4.1:23886308-23886327 | MS.gene26461:intron | 40.0% | |
| CCCAAACAATTCGTCATTTG+TGG | - | chr4.1:23886935-23886954 | MS.gene26461:CDS | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | - | chr4.1:23886755-23886774 | MS.gene26461:CDS | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | + | chr4.1:23886729-23886748 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | - | chr4.1:23887169-23887188 | MS.gene26461:intron | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | + | chr4.1:23887092-23887111 | None:intergenic | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | - | chr4.1:23887851-23887870 | MS.gene26461:CDS | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4.1:23887230-23887249 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | + | chr4.1:23886707-23886726 | None:intergenic | 40.0% | |
| GTGTTCAGACAGGTTTCATT+TGG | - | chr4.1:23886201-23886220 | MS.gene26461:CDS | 40.0% | |
| TAGCCAAAAATTGTTCCACC+CGG | - | chr4.1:23886894-23886913 | MS.gene26461:CDS | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | + | chr4.1:23886705-23886724 | None:intergenic | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4.1:23887447-23887466 | MS.gene26461:intron | 40.0% | |
| ! | AGAACTCGATTTTCATTCCC+GGG | + | chr4.1:23886915-23886934 | None:intergenic | 40.0% |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4.1:23887241-23887260 | MS.gene26461:intron | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+CGG | + | chr4.1:23886916-23886935 | None:intergenic | 40.0% |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | + | chr4.1:23886310-23886329 | None:intergenic | 40.0% |
| AATCAACGAAGGAGATGCTC+TGG | - | chr4.1:23886319-23886338 | MS.gene26461:intron | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | + | chr4.1:23887187-23887206 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4.1:23886510-23886529 | None:intergenic | 45.0% | |
| AGATGACTCACTCCCAAATG+GGG | + | chr4.1:23887185-23887204 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+GGG | - | chr4.1:23886895-23886914 | MS.gene26461:CDS | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4.1:23887218-23887237 | MS.gene26461:intron | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | + | chr4.1:23887186-23887205 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4.1:23887200-23887219 | MS.gene26461:intron | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | - | chr4.1:23887871-23887890 | MS.gene26461:CDS | 45.0% | |
| CTCCAACACCAAAGCAATTG+TGG | + | chr4.1:23887458-23887477 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4.1:23886511-23886530 | MS.gene26461:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4.1:23887219-23887238 | MS.gene26461:intron | 45.0% | |
| TGGTGAGGAAGAAGAGAAAC+CGG | - | chr4.1:23886339-23886358 | MS.gene26461:intron | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | - | chr4.1:23886732-23886751 | MS.gene26461:CDS | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | - | chr4.1:23886688-23886707 | MS.gene26461:CDS | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | + | chr4.1:23886361-23886380 | None:intergenic | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | + | chr4.1:23886753-23886772 | None:intergenic | 45.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | - | chr4.1:23886191-23886210 | MS.gene26461:CDS | 45.0% |
| ! | GACCACAATTGCTTTGGTGT+TGG | - | chr4.1:23887453-23887472 | MS.gene26461:intron | 45.0% |
| ! | TTCCCGGGTGGAACAATTTT+TGG | + | chr4.1:23886900-23886919 | None:intergenic | 45.0% |
| GAAACATACAAGCATGCGGC+TGG | - | chr4.1:23887855-23887874 | MS.gene26461:CDS | 50.0% | |
| GAATTTGGGAGATCACCCCA+TGG | + | chr4.1:23886236-23886255 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4.1:23887445-23887464 | None:intergenic | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | - | chr4.1:23886340-23886359 | MS.gene26461:intron | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | - | chr4.1:23886341-23886360 | MS.gene26461:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4.1:23886502-23886521 | None:intergenic | 50.0% | |
| ! | ACTCGATTTTCATTCCCGGG+TGG | + | chr4.1:23886912-23886931 | None:intergenic | 50.0% |
| ACCTCACGGCCAAACTTCGA+AGG | + | chr4.1:23886864-23886883 | None:intergenic | 55.0% | |
| ACCTTCGAAGTTTGGCCGTG+AGG | - | chr4.1:23886860-23886879 | MS.gene26461:CDS | 55.0% | |
| ACGAAGGAGATGCTCTGGTG+AGG | - | chr4.1:23886324-23886343 | MS.gene26461:intron | 55.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | - | chr4.1:23886344-23886363 | MS.gene26461:intron | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | - | chr4.1:23886346-23886365 | MS.gene26461:intron | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | - | chr4.1:23886345-23886364 | MS.gene26461:intron | 55.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | + | chr4.1:23886740-23886759 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 23886173 | 23887902 | 23886173 | ID=MS.gene26461 |
| chr4.1 | mRNA | 23886173 | 23887902 | 23886173 | ID=MS.gene26461.t1;Parent=MS.gene26461 |
| chr4.1 | exon | 23887543 | 23887902 | 23887543 | ID=MS.gene26461.t1.exon1;Parent=MS.gene26461.t1 |
| chr4.1 | CDS | 23887543 | 23887902 | 23887543 | ID=cds.MS.gene26461.t1;Parent=MS.gene26461.t1 |
| chr4.1 | exon | 23886523 | 23886999 | 23886523 | ID=MS.gene26461.t1.exon2;Parent=MS.gene26461.t1 |
| chr4.1 | CDS | 23886523 | 23886999 | 23886523 | ID=cds.MS.gene26461.t1;Parent=MS.gene26461.t1 |
| chr4.1 | exon | 23886173 | 23886256 | 23886173 | ID=MS.gene26461.t1.exon3;Parent=MS.gene26461.t1 |
| chr4.1 | CDS | 23886173 | 23886256 | 23886173 | ID=cds.MS.gene26461.t1;Parent=MS.gene26461.t1 |
| Gene Sequence |
| Protein sequence |
