Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26576.t1 | XP_024632961.1 | 84.6 | 793 | 94 | 4 | 1 | 765 | 1 | 793 | 0.00E+00 | 1340.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26576.t1 | Q9SZL8 | 26.9 | 636 | 395 | 11 | 32 | 665 | 70 | 637 | 4.8e-63 | 244.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26576.t1 | D3YBB9 | 76.7 | 774 | 160 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1189.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene26576.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26576.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 548 |
MS.gene26576.t1 | MTR_1g083640 | 83.451 | 284 | 31 | 1 | 1 | 268 | 1 | 284 | 3.60e-173 | 499 |
MS.gene26576.t1 | MTR_8g446020 | 73.559 | 295 | 39 | 1 | 1 | 295 | 1 | 256 | 7.74e-152 | 443 |
MS.gene26576.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 65 | 301 | 1 | 237 | 1.91e-142 | 423 |
MS.gene26576.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 3.44e-34 | 135 |
MS.gene26576.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 8.51e-11 | 65.1 |
MS.gene26576.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 2.93e-142 | 418 |
MS.gene26576.t1 | MTR_0337s0040 | 72.308 | 260 | 32 | 2 | 1 | 259 | 1 | 221 | 2.96e-124 | 371 |
MS.gene26576.t1 | MTR_3g008240 | 84.729 | 203 | 30 | 1 | 1 | 202 | 1 | 203 | 1.04e-118 | 356 |
MS.gene26576.t1 | MTR_4g040430 | 84.158 | 202 | 28 | 1 | 1 | 202 | 1 | 198 | 3.60e-118 | 354 |
MS.gene26576.t1 | MTR_0337s0060 | 58.861 | 316 | 30 | 4 | 447 | 759 | 21 | 239 | 7.70e-109 | 332 |
MS.gene26576.t1 | MTR_5g071590 | 73.889 | 180 | 34 | 2 | 1 | 167 | 1 | 180 | 5.01e-90 | 281 |
MS.gene26576.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 6.23e-87 | 271 |
MS.gene26576.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 82 | 233 | 9 | 160 | 4.70e-86 | 269 |
MS.gene26576.t1 | MTR_3g028680 | 80.795 | 151 | 26 | 1 | 618 | 765 | 1 | 151 | 5.06e-80 | 254 |
MS.gene26576.t1 | MTR_2g067090 | 77.703 | 148 | 30 | 1 | 621 | 765 | 99 | 246 | 4.24e-71 | 234 |
MS.gene26576.t1 | MTR_4g133495 | 60.714 | 196 | 49 | 4 | 576 | 768 | 88 | 258 | 2.99e-66 | 221 |
MS.gene26576.t1 | MTR_4g133340 | 60.714 | 196 | 49 | 4 | 576 | 768 | 88 | 258 | 2.99e-66 | 221 |
MS.gene26576.t1 | MTR_1281s0010 | 81.651 | 109 | 20 | 0 | 19 | 127 | 1 | 109 | 7.30e-57 | 189 |
MS.gene26576.t1 | MTR_6g051425 | 31.761 | 318 | 186 | 6 | 40 | 341 | 22 | 324 | 6.54e-38 | 145 |
MS.gene26576.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 1.76e-31 | 131 |
MS.gene26576.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.37e-31 | 122 |
MS.gene26576.t1 | MTR_1g070355 | 27.888 | 251 | 162 | 4 | 41 | 291 | 80 | 311 | 7.66e-19 | 91.3 |
MS.gene26576.t1 | MTR_2g067130 | 62.162 | 74 | 22 | 2 | 695 | 765 | 46 | 116 | 1.98e-18 | 83.6 |
MS.gene26576.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 1.70e-14 | 77.4 |
MS.gene26576.t1 | MTR_0337s0050 | 72.222 | 36 | 10 | 0 | 259 | 294 | 14 | 49 | 7.67e-13 | 64.7 |
MS.gene26576.t1 | MTR_4g035820 | 22.069 | 290 | 193 | 7 | 17 | 299 | 61 | 324 | 2.57e-12 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26576.t1 | AT4G38180 | 27.613 | 641 | 384 | 13 | 32 | 665 | 70 | 637 | 9.09e-70 | 245 |
MS.gene26576.t1 | AT4G15090 | 24.856 | 696 | 436 | 15 | 50 | 741 | 66 | 678 | 8.03e-59 | 214 |
MS.gene26576.t1 | AT4G15090 | 24.856 | 696 | 436 | 15 | 50 | 741 | 66 | 678 | 8.03e-59 | 214 |
MS.gene26576.t1 | AT4G15090 | 24.856 | 696 | 436 | 15 | 50 | 741 | 66 | 678 | 8.03e-59 | 214 |
MS.gene26576.t1 | AT4G15090 | 24.856 | 696 | 436 | 15 | 50 | 741 | 66 | 678 | 8.03e-59 | 214 |
MS.gene26576.t1 | AT4G15090 | 24.856 | 696 | 436 | 15 | 50 | 741 | 66 | 678 | 8.03e-59 | 214 |
MS.gene26576.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 3.36e-53 | 198 |
MS.gene26576.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 3.36e-53 | 198 |
MS.gene26576.t1 | AT2G27110 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 9.29e-53 | 195 |
MS.gene26576.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 8.51e-52 | 193 |
MS.gene26576.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 8.51e-52 | 193 |
MS.gene26576.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 8.51e-52 | 193 |
MS.gene26576.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 5.67e-50 | 187 |
MS.gene26576.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 1.63e-49 | 186 |
MS.gene26576.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 1.73e-49 | 186 |
MS.gene26576.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 1.73e-49 | 186 |
MS.gene26576.t1 | AT3G22170 | 22.207 | 725 | 457 | 16 | 34 | 753 | 69 | 691 | 6.37e-47 | 180 |
MS.gene26576.t1 | AT3G22170 | 22.207 | 725 | 457 | 16 | 34 | 753 | 69 | 691 | 6.37e-47 | 180 |
MS.gene26576.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.89e-46 | 177 |
MS.gene26576.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.89e-46 | 177 |
MS.gene26576.t1 | AT5G28530 | 24.257 | 639 | 387 | 17 | 40 | 660 | 60 | 619 | 4.76e-43 | 167 |
MS.gene26576.t1 | AT4G38170 | 24.324 | 481 | 296 | 13 | 235 | 703 | 24 | 448 | 8.23e-43 | 164 |
MS.gene26576.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 1.43e-42 | 165 |
MS.gene26576.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 1.43e-42 | 165 |
MS.gene26576.t1 | AT5G28530 | 24.100 | 639 | 384 | 18 | 40 | 660 | 60 | 615 | 3.20e-42 | 164 |
MS.gene26576.t1 | AT5G28530 | 24.100 | 639 | 384 | 18 | 40 | 660 | 60 | 615 | 3.20e-42 | 164 |
MS.gene26576.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.43e-39 | 157 |
MS.gene26576.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.43e-39 | 157 |
MS.gene26576.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.43e-39 | 157 |
MS.gene26576.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene26576.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene26576.t1 | AT2G32250 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.80e-39 | 157 |
MS.gene26576.t1 | AT2G32250 | 23.605 | 699 | 400 | 18 | 50 | 743 | 12 | 581 | 1.09e-38 | 154 |
MS.gene26576.t1 | AT2G32250 | 23.605 | 699 | 400 | 18 | 50 | 743 | 12 | 581 | 1.29e-38 | 154 |
MS.gene26576.t1 | AT1G80010 | 23.252 | 658 | 372 | 24 | 41 | 662 | 101 | 661 | 2.60e-34 | 140 |
MS.gene26576.t1 | AT1G52520 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 1.74e-33 | 138 |
MS.gene26576.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.29e-26 | 116 |
MS.gene26576.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.14e-12 | 71.2 |
MS.gene26576.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 177 | 440 | 1.59e-26 | 116 |
MS.gene26576.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.21e-12 | 71.2 |
MS.gene26576.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 1.63e-26 | 116 |
MS.gene26576.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.07e-12 | 71.2 |
MS.gene26576.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.92e-26 | 116 |
MS.gene26576.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
MS.gene26576.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.92e-26 | 116 |
MS.gene26576.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
MS.gene26576.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 2.20e-26 | 115 |
MS.gene26576.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.04e-12 | 71.2 |
MS.gene26576.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 2.20e-26 | 115 |
MS.gene26576.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.04e-12 | 71.2 |
MS.gene26576.t1 | AT5G28530 | 21.940 | 629 | 351 | 20 | 40 | 660 | 60 | 556 | 5.52e-24 | 107 |
MS.gene26576.t1 | AT5G28530 | 21.781 | 629 | 348 | 21 | 40 | 660 | 60 | 552 | 3.28e-23 | 105 |
Find 116 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 4.1:+22723040 | MS.gene26576:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 4.1:+22722731 | MS.gene26576:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 4.1:-22723866 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4.1:+22722998 | MS.gene26576:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4.1:+22721947 | MS.gene26576:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 4.1:+22722450 | MS.gene26576:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 4.1:+22722483 | MS.gene26576:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 4.1:-22722577 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 4.1:-22723860 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 4.1:+22722772 | MS.gene26576:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.324740 | 4.1:+22723712 | MS.gene26576:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 4.1:-22722595 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4.1:-22721997 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 4.1:+22723295 | MS.gene26576:CDS |
CTCAATGGTGTTCTTGAGGC+AGG | 0.359373 | 4.1:+22723704 | MS.gene26576:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 4.1:+22722872 | MS.gene26576:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 4.1:+22722004 | MS.gene26576:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4.1:+22721996 | MS.gene26576:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 4.1:+22722871 | MS.gene26576:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 4.1:-22723588 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4.1:-22721467 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 4.1:+22723852 | MS.gene26576:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 4.1:-22723842 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 4.1:+22723172 | MS.gene26576:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 4.1:+22723737 | MS.gene26576:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4.1:+22721238 | MS.gene26576:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 4.1:+22723420 | MS.gene26576:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 4.1:-22723343 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4.1:+22721309 | MS.gene26576:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 4.1:-22723344 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4.1:+22721644 | MS.gene26576:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4.1:+22721526 | MS.gene26576:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 4.1:-22722588 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4.1:+22721509 | MS.gene26576:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 4.1:-22723521 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 4.1:+22721392 | MS.gene26576:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4.1:+22721674 | MS.gene26576:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4.1:+22721163 | MS.gene26576:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 4.1:+22722662 | MS.gene26576:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 4.1:+22722826 | MS.gene26576:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 4.1:+22723421 | MS.gene26576:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4.1:+22721358 | MS.gene26576:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 4.1:+22723378 | MS.gene26576:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 4.1:+22721719 | MS.gene26576:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 4.1:-22723174 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4.1:-22721503 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 4.1:+22721296 | MS.gene26576:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 4.1:+22723813 | MS.gene26576:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 4.1:+22721787 | MS.gene26576:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 4.1:-22721614 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4.1:+22721352 | MS.gene26576:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 4.1:+22723188 | MS.gene26576:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 4.1:-22722463 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 4.1:+22722773 | MS.gene26576:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 4.1:+22721800 | MS.gene26576:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4.1:+22723012 | MS.gene26576:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 4.1:-22723092 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 4.1:+22721706 | MS.gene26576:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4.1:-22721892 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 4.1:+22723812 | MS.gene26576:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 4.1:-22721602 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 4.1:+22722859 | MS.gene26576:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 4.1:+22723357 | MS.gene26576:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4.1:-22721758 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 4.1:+22723031 | MS.gene26576:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 4.1:+22722877 | MS.gene26576:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 4.1:+22721562 | MS.gene26576:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 4.1:-22723337 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 4.1:-22722980 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 4.1:+22721403 | MS.gene26576:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 4.1:+22723358 | MS.gene26576:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 4.1:-22723169 | None:intergenic |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 4.1:+22723377 | MS.gene26576:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 4.1:-22722975 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 4.1:+22723189 | MS.gene26576:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4.1:+22721404 | MS.gene26576:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 4.1:+22721228 | MS.gene26576:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 4.1:-22722608 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 4.1:+22723578 | MS.gene26576:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4.1:+22721854 | MS.gene26576:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4.1:+22721187 | MS.gene26576:CDS |
GCATCTGAAATATTTCTCAA+TGG | 0.566996 | 4.1:+22723689 | MS.gene26576:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 4.1:+22721722 | MS.gene26576:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 4.1:+22723664 | MS.gene26576:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 4.1:+22721561 | MS.gene26576:CDS |
ATTTCTCAATGGTGTTCTTG+AGG | 0.572762 | 4.1:+22723700 | MS.gene26576:CDS |
TCAATGGTGTTCTTGAGGCA+GGG | 0.576112 | 4.1:+22723705 | MS.gene26576:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 4.1:-22723093 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 4.1:-22723824 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 4.1:-22723114 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 4.1:+22721152 | MS.gene26576:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 4.1:+22721713 | MS.gene26576:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 4.1:+22722594 | MS.gene26576:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 4.1:+22723327 | MS.gene26576:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 4.1:-22723780 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 4.1:+22721793 | MS.gene26576:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 4.1:+22721707 | MS.gene26576:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 4.1:+22721796 | MS.gene26576:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 4.1:+22723667 | MS.gene26576:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 4.1:+22723090 | MS.gene26576:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 4.1:+22723175 | MS.gene26576:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 4.1:-22723612 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4.1:-22721452 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 4.1:-22722828 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 4.1:+22721727 | MS.gene26576:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 4.1:-22723342 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 4.1:+22722663 | MS.gene26576:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 4.1:-22723585 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4.1:+22723013 | MS.gene26576:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 4.1:-22723563 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 4.1:-22723134 | None:intergenic |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 4.1:-22723439 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 4.1:+22722590 | MS.gene26576:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 4.1:+22723422 | MS.gene26576:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 4.1:+22723273 | MS.gene26576:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 4.1:+22723274 | MS.gene26576:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACCATAATTATAGTTTAA+TGG | - | chr4.1:22724239-22724258 | None:intergenic | 15.0% |
!! | AAACCATTAAACTATAATTA+TGG | + | chr4.1:22724233-22724252 | MS.gene26576:intron | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr4.1:22723992-22724011 | MS.gene26576:intron | 15.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr4.1:22721561-22721580 | MS.gene26576:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr4.1:22721352-22721371 | MS.gene26576:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr4.1:22721562-22721581 | MS.gene26576:CDS | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr4.1:22721296-22721315 | MS.gene26576:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr4.1:22722179-22722198 | MS.gene26576:intron | 20.0% |
!!! | ACGCATTTATTACTATATTT+TGG | + | chr4.1:22724163-22724182 | MS.gene26576:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr4.1:22722801-22722820 | MS.gene26576:CDS | 20.0% |
!!! | CTATACATTTTCACATTTTT+TGG | + | chr4.1:22724135-22724154 | MS.gene26576:intron | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr4.1:22722151-22722170 | MS.gene26576:intron | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr4.1:22722639-22722658 | None:intergenic | 25.0% |
! | AAACCAAATTAACAGTCTAA+TGG | - | chr4.1:22724196-22724215 | None:intergenic | 25.0% |
! | AAACCATTAGACTGTTAATT+TGG | + | chr4.1:22724190-22724209 | MS.gene26576:intron | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr4.1:22724090-22724109 | MS.gene26576:intron | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr4.1:22721358-22721377 | MS.gene26576:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr4.1:22721996-22722015 | MS.gene26576:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr4.1:22722022-22722041 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr4.1:22723172-22723191 | None:intergenic | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr4.1:22721228-22721247 | MS.gene26576:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr4.1:22722998-22723017 | MS.gene26576:CDS | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr4.1:22721187-22721206 | MS.gene26576:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr4.1:22722069-22722088 | MS.gene26576:intron | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr4.1:22723137-22723156 | None:intergenic | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr4.1:22724023-22724042 | MS.gene26576:intron | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr4.1:22723172-22723191 | MS.gene26576:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr4.1:22722731-22722750 | MS.gene26576:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr4.1:22722171-22722190 | MS.gene26576:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr4.1:22722427-22722446 | MS.gene26576:intron | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | + | chr4.1:22724109-22724128 | MS.gene26576:intron | 25.0% |
!! | TTTTCAATTACTGAGTTAAG+TGG | + | chr4.1:22724267-22724286 | MS.gene26576:intron | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr4.1:22723273-22723292 | MS.gene26576:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr4.1:22721348-22721367 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr4.1:22722178-22722197 | MS.gene26576:intron | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr4.1:22721674-22721693 | MS.gene26576:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr4.1:22722805-22722824 | MS.gene26576:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr4.1:22723274-22723293 | MS.gene26576:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr4.1:22722242-22722261 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr4.1:22721404-22721423 | MS.gene26576:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr4.1:22722004-22722023 | MS.gene26576:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | + | chr4.1:22723852-22723871 | MS.gene26576:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr4.1:22722772-22722791 | MS.gene26576:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr4.1:22721707-22721726 | MS.gene26576:CDS | 30.0% | |
ATATTAACTTCATCTGAGAG+TGG | + | chr4.1:22721152-22721171 | MS.gene26576:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr4.1:22722773-22722792 | MS.gene26576:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr4.1:22722466-22722485 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | - | chr4.1:22723345-22723364 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr4.1:22721947-22721966 | MS.gene26576:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr4.1:22721392-22721411 | MS.gene26576:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr4.1:22723177-22723196 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr4.1:22722108-22722127 | MS.gene26576:intron | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr4.1:22723175-22723194 | MS.gene26576:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | + | chr4.1:22722687-22722706 | MS.gene26576:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr4.1:22723346-22723365 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr4.1:22722000-22722019 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr4.1:22721493-22721512 | MS.gene26576:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr4.1:22721238-22721257 | MS.gene26576:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr4.1:22722983-22723002 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr4.1:22721403-22721422 | MS.gene26576:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr4.1:22721875-22721894 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr4.1:22723117-22723136 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr4.1:22723863-22723882 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr4.1:22721761-22721780 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr4.1:22722386-22722405 | MS.gene26576:intron | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr4.1:22721605-22721624 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr4.1:22721526-22721545 | MS.gene26576:CDS | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr4.1:22723232-22723251 | MS.gene26576:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr4.1:22721751-22721770 | MS.gene26576:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+TGG | + | chr4.1:22723689-22723708 | MS.gene26576:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr4.1:22722580-22722599 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr4.1:22722630-22722649 | MS.gene26576:CDS | 30.0% |
! | TCAGTTTTCAATTCAATGAG+TGG | - | chr4.1:22724411-22724430 | None:intergenic | 30.0% |
! | TGAGGCTTTAACAAATTAAG+CGG | + | chr4.1:22723961-22723980 | MS.gene26576:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr4.1:22723845-22723864 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr4.1:22723457-22723476 | MS.gene26576:CDS | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr4.1:22723357-22723376 | MS.gene26576:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr4.1:22722083-22722102 | MS.gene26576:intron | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr4.1:22723737-22723756 | MS.gene26576:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr4.1:22723358-22723377 | MS.gene26576:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr4.1:22723454-22723473 | MS.gene26576:CDS | 30.0% |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr4.1:22721909-22721928 | MS.gene26576:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr4.1:22721910-22721929 | MS.gene26576:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr4.1:22723522-22723541 | MS.gene26576:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr4.1:22722642-22722661 | MS.gene26576:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr4.1:22723012-22723031 | MS.gene26576:CDS | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | + | chr4.1:22721309-22721328 | MS.gene26576:CDS | 35.0% | |
ATTTCTCAATGGTGTTCTTG+AGG | + | chr4.1:22723700-22723719 | MS.gene26576:CDS | 35.0% | |
CATAAATTCCAAGGCAAGAT+AGG | - | chr4.1:22722209-22722228 | None:intergenic | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr4.1:22723013-22723032 | MS.gene26576:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr4.1:22721644-22721663 | MS.gene26576:CDS | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | - | chr4.1:22723347-22723366 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr4.1:22721492-22721511 | MS.gene26576:CDS | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | + | chr4.1:22722859-22722878 | MS.gene26576:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr4.1:22721487-22721506 | MS.gene26576:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr4.1:22723943-22723962 | MS.gene26576:intron | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | + | chr4.1:22723918-22723937 | MS.gene26576:intron | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr4.1:22721706-22721725 | MS.gene26576:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr4.1:22721429-22721448 | MS.gene26576:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr4.1:22721787-22721806 | MS.gene26576:CDS | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr4.1:22722218-22722237 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr4.1:22721470-22721489 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr4.1:22722483-22722502 | MS.gene26576:CDS | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr4.1:22723962-22723981 | MS.gene26576:intron | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr4.1:22723295-22723314 | MS.gene26576:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr4.1:22722942-22722961 | MS.gene26576:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr4.1:22722089-22722108 | MS.gene26576:intron | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr4.1:22722815-22722834 | MS.gene26576:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr4.1:22722655-22722674 | MS.gene26576:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr4.1:22723791-22723810 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr4.1:22723524-22723543 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr4.1:22722872-22722891 | MS.gene26576:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr4.1:22723464-22723483 | MS.gene26576:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr4.1:22722526-22722545 | MS.gene26576:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr4.1:22723525-22723544 | MS.gene26576:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr4.1:22722978-22722997 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr4.1:22722336-22722355 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr4.1:22723869-22723888 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | + | chr4.1:22721163-22721182 | MS.gene26576:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr4.1:22723189-22723208 | MS.gene26576:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr4.1:22723421-22723440 | MS.gene26576:CDS | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr4.1:22722222-22722241 | MS.gene26576:intron | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr4.1:22723420-22723439 | MS.gene26576:CDS | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr4.1:22723578-22723597 | MS.gene26576:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr4.1:22723566-22723585 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | + | chr4.1:22724354-22724373 | MS.gene26576:intron | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr4.1:22723591-22723610 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | + | chr4.1:22723188-22723207 | MS.gene26576:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr4.1:22722590-22722609 | MS.gene26576:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr4.1:22722332-22722351 | MS.gene26576:intron | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | - | chr4.1:22721921-22721940 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr4.1:22722591-22722610 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr4.1:22722450-22722469 | MS.gene26576:intron | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr4.1:22723327-22723346 | MS.gene26576:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr4.1:22723588-22723607 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr4.1:22723931-22723950 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr4.1:22723040-22723059 | MS.gene26576:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr4.1:22723783-22723802 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr4.1:22723467-22723486 | MS.gene26576:CDS | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr4.1:22722871-22722890 | MS.gene26576:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr4.1:22721443-22721462 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr4.1:22721713-22721732 | MS.gene26576:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr4.1:22721796-22721815 | MS.gene26576:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr4.1:22721854-22721873 | MS.gene26576:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr4.1:22721455-22721474 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr4.1:22722831-22722850 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr4.1:22723090-22723109 | MS.gene26576:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr4.1:22723442-22723461 | None:intergenic | 45.0% | |
CTCAAGTAGCACAAATGCTC+TGG | - | chr4.1:22721617-22721636 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | + | chr4.1:22723813-22723832 | MS.gene26576:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr4.1:22721497-22721516 | MS.gene26576:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr4.1:22721793-22721812 | MS.gene26576:CDS | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | + | chr4.1:22723031-22723050 | MS.gene26576:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr4.1:22723340-22723359 | None:intergenic | 45.0% | |
TCAATGGTGTTCTTGAGGCA+GGG | + | chr4.1:22723705-22723724 | MS.gene26576:CDS | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr4.1:22723422-22723441 | MS.gene26576:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr4.1:22721895-22721914 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr4.1:22723712-22723731 | MS.gene26576:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr4.1:22721506-22721525 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr4.1:22723615-22723634 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr4.1:22722894-22722913 | MS.gene26576:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr4.1:22722877-22722896 | MS.gene26576:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4.1:22721509-22721528 | MS.gene26576:CDS | 45.0% |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr4.1:22721917-22721936 | MS.gene26576:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr4.1:22722598-22722617 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr4.1:22722594-22722613 | MS.gene26576:CDS | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr4.1:22723377-22723396 | MS.gene26576:CDS | 50.0% | |
CTCAATGGTGTTCTTGAGGC+AGG | + | chr4.1:22723704-22723723 | MS.gene26576:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr4.1:22723095-22723114 | None:intergenic | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | + | chr4.1:22723812-22723831 | MS.gene26576:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr4.1:22722826-22722845 | MS.gene26576:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr4.1:22723378-22723397 | MS.gene26576:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr4.1:22722663-22722682 | MS.gene26576:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr4.1:22723664-22723683 | MS.gene26576:CDS | 50.0% | |
TGGGTGATCCTATCTTGCCT+TGG | + | chr4.1:22722198-22722217 | MS.gene26576:intron | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr4.1:22722662-22722681 | MS.gene26576:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr4.1:22723827-22723846 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr4.1:22721719-22721738 | MS.gene26576:CDS | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr4.1:22722611-22722630 | None:intergenic | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr4.1:22723096-22723115 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr4.1:22723718-22723737 | MS.gene26576:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr4.1:22721800-22721819 | MS.gene26576:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr4.1:22721722-22721741 | MS.gene26576:CDS | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr4.1:22723667-22723686 | MS.gene26576:CDS | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr4.1:22721727-22721746 | MS.gene26576:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 22721143 | 22724493 | 22721143 | ID=MS.gene26576 |
chr4.1 | mRNA | 22721143 | 22724493 | 22721143 | ID=MS.gene26576.t1;Parent=MS.gene26576 |
chr4.1 | exon | 22721143 | 22722025 | 22721143 | ID=MS.gene26576.t1.exon1;Parent=MS.gene26576.t1 |
chr4.1 | CDS | 22721143 | 22722025 | 22721143 | ID=cds.MS.gene26576.t1;Parent=MS.gene26576.t1 |
chr4.1 | exon | 22722460 | 22723873 | 22722460 | ID=MS.gene26576.t1.exon2;Parent=MS.gene26576.t1 |
chr4.1 | CDS | 22722460 | 22723873 | 22722460 | ID=cds.MS.gene26576.t1;Parent=MS.gene26576.t1 |
chr4.1 | exon | 22724478 | 22724493 | 22724478 | ID=MS.gene26576.t1.exon3;Parent=MS.gene26576.t1 |
chr4.1 | CDS | 22724478 | 22724493 | 22724478 | ID=cds.MS.gene26576.t1;Parent=MS.gene26576.t1 |
Gene Sequence |
Protein sequence |