Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26588.t1 | XP_003608130.2 | 93.4 | 272 | 13 | 1 | 1 | 267 | 1 | 272 | 4.70E-134 | 487.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26588.t1 | Q9S7Y1 | 38.8 | 178 | 106 | 3 | 56 | 232 | 160 | 335 | 4.4e-24 | 113.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26588.t1 | G7JPQ2 | 93.4 | 272 | 13 | 1 | 1 | 267 | 1 | 272 | 3.4e-134 | 487.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26588.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26588.t1 | MTR_4g087920 | 93.436 | 259 | 12 | 1 | 1 | 254 | 1 | 259 | 5.66e-169 | 468 |
| MS.gene26588.t1 | MTR_2g015890 | 55.512 | 254 | 100 | 4 | 19 | 267 | 11 | 256 | 3.91e-84 | 252 |
| MS.gene26588.t1 | MTR_2g015890 | 47.638 | 254 | 80 | 5 | 19 | 267 | 11 | 216 | 1.37e-60 | 191 |
| MS.gene26588.t1 | MTR_2g015890 | 58.182 | 165 | 62 | 2 | 103 | 267 | 1 | 158 | 1.19e-58 | 184 |
| MS.gene26588.t1 | MTR_2g091190 | 45.259 | 232 | 117 | 6 | 7 | 237 | 4 | 226 | 1.47e-48 | 161 |
| MS.gene26588.t1 | MTR_4g079760 | 39.147 | 258 | 149 | 6 | 1 | 257 | 1 | 251 | 3.73e-42 | 145 |
| MS.gene26588.t1 | MTR_2g015890 | 46.061 | 165 | 42 | 3 | 103 | 267 | 1 | 118 | 3.71e-35 | 122 |
| MS.gene26588.t1 | MTR_3g070970 | 34.673 | 199 | 110 | 7 | 64 | 252 | 67 | 255 | 1.37e-28 | 110 |
| MS.gene26588.t1 | MTR_1g093750 | 41.667 | 180 | 94 | 5 | 56 | 231 | 144 | 316 | 3.14e-25 | 102 |
| MS.gene26588.t1 | MTR_5g032375 | 31.737 | 167 | 97 | 4 | 68 | 222 | 43 | 204 | 2.20e-15 | 73.6 |
| MS.gene26588.t1 | MTR_5g066080 | 33.000 | 200 | 91 | 4 | 63 | 229 | 30 | 219 | 1.37e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26588.t1 | AT3G56770 | 39.205 | 176 | 98 | 5 | 62 | 235 | 37 | 205 | 5.56e-30 | 112 |
| MS.gene26588.t1 | AT2G40200 | 41.667 | 132 | 73 | 2 | 72 | 200 | 65 | 195 | 1.17e-27 | 107 |
| MS.gene26588.t1 | AT2G41130 | 38.068 | 176 | 101 | 4 | 62 | 235 | 59 | 228 | 4.65e-24 | 97.8 |
| MS.gene26588.t1 | AT1G68810 | 40.306 | 196 | 111 | 5 | 56 | 250 | 160 | 350 | 4.77e-24 | 99.8 |
| MS.gene26588.t1 | AT3G25710 | 38.776 | 147 | 86 | 3 | 56 | 201 | 118 | 261 | 2.31e-20 | 89.4 |
Find 55 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCTTCTCCTCTTATT+TGG | 0.100613 | 4.1:+22614375 | None:intergenic |
| ATCACCACATTCATTGGTTT+TGG | 0.252086 | 4.1:-22617593 | MS.gene26588:CDS |
| TTCGTCAAGGTATGATGATT+TGG | 0.259992 | 4.1:-22617665 | MS.gene26588:CDS |
| GAACCATATGATACTAAATT+AGG | 0.319188 | 4.1:-22614681 | MS.gene26588:CDS |
| AGAAGAAGGGAGAGAATAAA+TGG | 0.348920 | 4.1:-22617457 | MS.gene26588:CDS |
| TATGATACTAAATTAGGATA+TGG | 0.351083 | 4.1:-22614675 | MS.gene26588:CDS |
| TCGTCAAGGTATGATGATTT+GGG | 0.363305 | 4.1:-22617664 | MS.gene26588:CDS |
| ATTGTCATCACCACATTCAT+TGG | 0.377503 | 4.1:-22617599 | MS.gene26588:CDS |
| TTCACTTCATCAACTTCTGT+TGG | 0.395317 | 4.1:+22614708 | None:intergenic |
| AATCAAGCTTTGGATAACTT+TGG | 0.396394 | 4.1:-22617634 | MS.gene26588:CDS |
| TATCCTAATTTAGTATCATA+TGG | 0.402521 | 4.1:+22614678 | None:intergenic |
| TTAAGGTCACATAGTATCTC+AGG | 0.426548 | 4.1:+22614612 | None:intergenic |
| GAACTTCATATCCAAATAAG+AGG | 0.441039 | 4.1:-22614386 | MS.gene26588:CDS |
| GGGAAGCAGAGAGGAGAAGA+AGG | 0.448212 | 4.1:-22617471 | MS.gene26588:CDS |
| TTCTCCTCTCTGCTTCCCTA+TGG | 0.451668 | 4.1:+22617476 | None:intergenic |
| GAGTGAGAAGGAAAAGGTGG+TGG | 0.454188 | 4.1:-22617569 | MS.gene26588:CDS |
| GGGTTTGTTCAATCAAGCTT+TGG | 0.456089 | 4.1:-22617644 | MS.gene26588:CDS |
| ACTGGATTCTGTGCTGGAAA+AGG | 0.471850 | 4.1:-22614436 | MS.gene26588:CDS |
| CAAGGCACTGGATTCTGTGC+TGG | 0.480944 | 4.1:-22614442 | MS.gene26588:CDS |
| TAGCTTCTTTGAAGAACCAT+AGG | 0.484232 | 4.1:-22617492 | MS.gene26588:CDS |
| TTTGGAGAGTGAGAAGGAAA+AGG | 0.491135 | 4.1:-22617575 | MS.gene26588:CDS |
| GGAAGCAGAGAGGAGAAGAA+GGG | 0.491306 | 4.1:-22617470 | MS.gene26588:CDS |
| GGAAAAGGCTTCTAACTCAA+TGG | 0.501654 | 4.1:-22614421 | MS.gene26588:CDS |
| TGTAGCTTCCACTCATCAAA+AGG | 0.507874 | 4.1:-22617410 | MS.gene26588:intron |
| TTGTCTTTACATGTTGCAAA+GGG | 0.509752 | 4.1:-22614512 | MS.gene26588:CDS |
| ATGACAAAATTTATTCGTCA+AGG | 0.510237 | 4.1:-22617678 | MS.gene26588:CDS |
| AAATGTCAACATTGGAAAGC+AGG | 0.511259 | 4.1:-22614548 | MS.gene26588:CDS |
| GATAACTTTGGAGCTTCCAA+TGG | 0.517984 | 4.1:-22617622 | MS.gene26588:CDS |
| CATGGATCTTGTTCATGCTA+AGG | 0.518273 | 4.1:-22614321 | None:intergenic |
| TTTGTCTTTACATGTTGCAA+AGG | 0.523070 | 4.1:-22614513 | MS.gene26588:CDS |
| AAATGTTGTTCACAAGGCAC+TGG | 0.530660 | 4.1:-22614454 | MS.gene26588:CDS |
| GATGATGTTTCTGAGGTGAA+AGG | 0.532394 | 4.1:-22617517 | MS.gene26588:CDS |
| GGAGAGTGAGAAGGAAAAGG+TGG | 0.534012 | 4.1:-22617572 | MS.gene26588:CDS |
| ATGGATCTTGTTCATGCTAA+GGG | 0.558202 | 4.1:-22614320 | None:intergenic |
| GAAGGCAGAAATGTCAACAT+TGG | 0.560990 | 4.1:-22614556 | MS.gene26588:CDS |
| GAGAGAATAAATGGTCACCT+TGG | 0.565872 | 4.1:-22617448 | MS.gene26588:CDS |
| GGAGTGCCCTGTTACTGAAA+AGG | 0.568614 | 4.1:-22617548 | MS.gene26588:CDS |
| GGAATTAAAGAAGAATGCAA+TGG | 0.577626 | 4.1:-22614754 | MS.gene26588:CDS |
| TCTACCTCTTCATGCAGCCA+TGG | 0.585535 | 4.1:-22614339 | MS.gene26588:CDS |
| AGCTTCTTTGAAGAACCATA+GGG | 0.592888 | 4.1:-22617491 | MS.gene26588:CDS |
| AGATCCATGGCTGCATGAAG+AGG | 0.593504 | 4.1:+22614335 | None:intergenic |
| AATCACTTCAGCAAGTATTG+TGG | 0.602708 | 4.1:+22614788 | None:intergenic |
| TGCCCTGTTACTGAAAAGGT+TGG | 0.605529 | 4.1:-22617544 | MS.gene26588:CDS |
| TATTGCAAATGTTGTTCACA+AGG | 0.609473 | 4.1:-22614460 | MS.gene26588:CDS |
| CAAGACCACGTAATGTTCCA+AGG | 0.609560 | 4.1:+22617431 | None:intergenic |
| CTCTCCAAAACCAATGAATG+TGG | 0.614029 | 4.1:+22617589 | None:intergenic |
| CTTAGCATGAACAAGATCCA+TGG | 0.618302 | 4.1:+22614322 | None:intergenic |
| TGAAGTGATTAGTCAAGTGA+AGG | 0.620505 | 4.1:-22614775 | MS.gene26588:CDS |
| ATGTGGTGATGACAATCCAT+TGG | 0.630316 | 4.1:+22617606 | None:intergenic |
| ACTTCAACTTCAACTAGTGA+AGG | 0.632952 | 4.1:-22614574 | MS.gene26588:CDS |
| AATGCAATGGAAGCAAGCAA+AGG | 0.642370 | 4.1:-22614741 | MS.gene26588:CDS |
| TGGTAAAGATGATGTTTCTG+AGG | 0.646156 | 4.1:-22617524 | MS.gene26588:CDS |
| GGTCACATAGTATCTCAGGT+TGG | 0.655590 | 4.1:+22614616 | None:intergenic |
| GGTCACCTTGGAACATTACG+TGG | 0.700048 | 4.1:-22617436 | MS.gene26588:CDS |
| AGAACCATAGGGAAGCAGAG+AGG | 0.739044 | 4.1:-22617480 | MS.gene26588:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATTGTAATTAAATTAA+GGG | - | chr4.1:22615775-22615794 | MS.gene26588:intron | 10.0% |
| !!! | ATTATATTTTTTTTTTTGGA+AGG | + | chr4.1:22617128-22617147 | None:intergenic | 10.0% |
| !!! | TAAAGTATTTTTTATTCTAA+AGG | + | chr4.1:22615596-22615615 | None:intergenic | 10.0% |
| !!! | TAAGAAAATATTTCTTTTTT+TGG | - | chr4.1:22616736-22616755 | MS.gene26588:intron | 10.0% |
| !!! | TGATAATTTTAAAAGAAAAA+TGG | - | chr4.1:22615701-22615720 | MS.gene26588:intron | 10.0% |
| !!! | TTATATTTTTTTTTTTGGAA+GGG | + | chr4.1:22617127-22617146 | None:intergenic | 10.0% |
| !! | AAAAATAAACACAAACTAAA+AGG | + | chr4.1:22615428-22615447 | None:intergenic | 15.0% |
| !! | ACTCCTATATTAATATTATA+AGG | - | chr4.1:22616619-22616638 | MS.gene26588:intron | 15.0% |
| !! | ATTATTATTATCCAAATCTA+TGG | - | chr4.1:22614848-22614867 | MS.gene26588:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr4.1:22615082-22615101 | MS.gene26588:intron | 15.0% |
| !! | CTCCTATATTAATATTATAA+GGG | - | chr4.1:22616620-22616639 | MS.gene26588:intron | 15.0% |
| !! | GCATTATTGTAATTAAATTA+AGG | - | chr4.1:22615774-22615793 | MS.gene26588:intron | 15.0% |
| !! | TAAATAAGCATTAAGAAATA+AGG | + | chr4.1:22615650-22615669 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr4.1:22615081-22615100 | MS.gene26588:intron | 15.0% |
| !! | TTATTATTATCCAAATCTAT+GGG | - | chr4.1:22614849-22614868 | MS.gene26588:intron | 15.0% |
| !!! | TCATGATATTAGTATTTTTA+TGG | - | chr4.1:22615932-22615951 | MS.gene26588:intron | 15.0% |
| !!! | TTCTAATTGTAAAATTTGTT+TGG | - | chr4.1:22614689-22614708 | MS.gene26588:CDS | 15.0% |
| !! | ACACAGATTAGTATAAATAA+AGG | - | chr4.1:22615016-22615035 | MS.gene26588:intron | 20.0% |
| !! | ACAGATTAGTATAAATAAAG+GGG | - | chr4.1:22615018-22615037 | MS.gene26588:intron | 20.0% |
| !! | AGATAACACATATATGATAT+CGG | - | chr4.1:22615491-22615510 | MS.gene26588:intron | 20.0% |
| !! | ATACTAAAAGAGAAATTCTT+AGG | + | chr4.1:22616430-22616449 | None:intergenic | 20.0% |
| !! | ATGAAGGATGATTATAATAT+GGG | + | chr4.1:22616801-22616820 | None:intergenic | 20.0% |
| !! | ATTCAATATCAAAATTCTGA+TGG | + | chr4.1:22615376-22615395 | None:intergenic | 20.0% |
| !! | ATTTAATGGAAAGTTGAAAT+TGG | - | chr4.1:22615204-22615223 | MS.gene26588:intron | 20.0% |
| !! | CACAGATTAGTATAAATAAA+GGG | - | chr4.1:22615017-22615036 | MS.gene26588:intron | 20.0% |
| !! | GACTAAATTAAGTTCAAATA+TGG | - | chr4.1:22616910-22616929 | MS.gene26588:intron | 20.0% |
| !! | TATCCTAATTTAGTATCATA+TGG | + | chr4.1:22617342-22617361 | None:intergenic | 20.0% |
| !! | TATGATACTAAATTAGGATA+TGG | - | chr4.1:22617342-22617361 | MS.gene26588:intron | 20.0% |
| !! | TGCCCTTATAATATTAATAT+AGG | + | chr4.1:22616625-22616644 | None:intergenic | 20.0% |
| !! | TTTAATGGAAAGTTGAAATT+GGG | - | chr4.1:22615205-22615224 | MS.gene26588:intron | 20.0% |
| !!! | CAATACATTATTTCTAGTTT+TGG | + | chr4.1:22616660-22616679 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr4.1:22615151-22615170 | MS.gene26588:intron | 20.0% |
| !!! | TTGTTGTCTTATTTCTATAA+TGG | - | chr4.1:22616489-22616508 | MS.gene26588:intron | 20.0% |
| !!! | TTTTTTACGGTAATAATACA+TGG | - | chr4.1:22616972-22616991 | MS.gene26588:intron | 20.0% |
| ! | AACAAATAAAGATAAGATGG+CGG | + | chr4.1:22616474-22616493 | None:intergenic | 25.0% |
| ! | AACACAAACTAAAAGGATAT+TGG | + | chr4.1:22615421-22615440 | None:intergenic | 25.0% |
| ! | AAGAAATAAGGAAATGCTAA+GGG | + | chr4.1:22615638-22615657 | None:intergenic | 25.0% |
| ! | ACTTCAAATTTCAAAACTTG+TGG | + | chr4.1:22615754-22615773 | None:intergenic | 25.0% |
| ! | AGGTGAGAATCAAATATAAT+TGG | - | chr4.1:22615307-22615326 | MS.gene26588:intron | 25.0% |
| ! | ATATTGCATAAAACATACGT+AGG | - | chr4.1:22614752-22614771 | MS.gene26588:CDS | 25.0% |
| ! | ATGACAAAATTTATTCGTCA+AGG | - | chr4.1:22614339-22614358 | MS.gene26588:CDS | 25.0% |
| ! | ATTCAAGACAATGTTATCAA+AGG | - | chr4.1:22616873-22616892 | MS.gene26588:intron | 25.0% |
| ! | GAACCATATGATACTAAATT+AGG | - | chr4.1:22617336-22617355 | MS.gene26588:intron | 25.0% |
| ! | GACAACAAATAAAGATAAGA+TGG | + | chr4.1:22616477-22616496 | None:intergenic | 25.0% |
| ! | GATGAAGGATGATTATAATA+TGG | + | chr4.1:22616802-22616821 | None:intergenic | 25.0% |
| ! | GGTGAGAATCAAATATAATT+GGG | - | chr4.1:22615308-22615327 | MS.gene26588:intron | 25.0% |
| ! | TAAGAAATAAGGAAATGCTA+AGG | + | chr4.1:22615639-22615658 | None:intergenic | 25.0% |
| ! | TAATAAATCAACTCAGTTGT+TGG | - | chr4.1:22616827-22616846 | MS.gene26588:intron | 25.0% |
| ! | TAATGAATGATTTCCAGTTT+GGG | + | chr4.1:22615974-22615993 | None:intergenic | 25.0% |
| ! | TTAATGAATGATTTCCAGTT+TGG | + | chr4.1:22615975-22615994 | None:intergenic | 25.0% |
| ! | TTTATTTATGAAGAGAGAGA+AGG | + | chr4.1:22616328-22616347 | None:intergenic | 25.0% |
| !! | AGTTTAAGTTTGAACAAAGA+TGG | - | chr4.1:22615264-22615283 | MS.gene26588:intron | 25.0% |
| !! | ATATACTTTTGTTCATGTCA+TGG | + | chr4.1:22616050-22616069 | None:intergenic | 25.0% |
| !! | ATGGTTCATTACATTTTAGA+TGG | - | chr4.1:22617200-22617219 | MS.gene26588:intron | 25.0% |
| !! | TATTTCTATAATGGTGATGT+GGG | - | chr4.1:22616498-22616517 | MS.gene26588:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | - | chr4.1:22615128-22615147 | MS.gene26588:intron | 25.0% |
| !! | TTTTATGGTTTCTTCTTCTA+TGG | - | chr4.1:22615947-22615966 | MS.gene26588:intron | 25.0% |
| !!! | ACAACTGAGTTGATTTATTA+AGG | + | chr4.1:22616827-22616846 | None:intergenic | 25.0% |
| !!! | ATATTAATATAGGAGTACTG+AGG | + | chr4.1:22616615-22616634 | None:intergenic | 25.0% |
| !!! | ATGTGTTGAATTTGATTTTG+TGG | - | chr4.1:22617173-22617192 | MS.gene26588:intron | 25.0% |
| !!! | CAGATATAGTTTTGGTTTTT+AGG | - | chr4.1:22615235-22615254 | MS.gene26588:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr4.1:22615150-22615169 | MS.gene26588:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | - | chr4.1:22615129-22615148 | MS.gene26588:intron | 25.0% |
| !!! | TGTGTTGAATTTGATTTTGT+GGG | - | chr4.1:22617174-22617193 | MS.gene26588:intron | 25.0% |
| !!! | TTATTTCTATAATGGTGATG+TGG | - | chr4.1:22616497-22616516 | MS.gene26588:intron | 25.0% |
| AAATATAATTGGGTACCTGA+GGG | - | chr4.1:22615318-22615337 | MS.gene26588:intron | 30.0% | |
| ACACTTCACAATCAAATTGA+AGG | - | chr4.1:22614787-22614806 | MS.gene26588:CDS | 30.0% | |
| ACTAATCACGTTCAAATATG+TGG | - | chr4.1:22617028-22617047 | MS.gene26588:intron | 30.0% | |
| CAAAAAGAACAATGAAAGCA+AGG | + | chr4.1:22614649-22614668 | None:intergenic | 30.0% | |
| CTAAAAGAGAAATTCTTAGG+TGG | + | chr4.1:22616427-22616446 | None:intergenic | 30.0% | |
| GAACTTCATATCCAAATAAG+AGG | - | chr4.1:22617631-22617650 | MS.gene26588:CDS | 30.0% | |
| GGAATTAAAGAAGAATGCAA+TGG | - | chr4.1:22617263-22617282 | MS.gene26588:intron | 30.0% | |
| GTGCAATTATATATCCCATA+TGG | - | chr4.1:22615895-22615914 | MS.gene26588:intron | 30.0% | |
| TATTGCAAATGTTGTTCACA+AGG | - | chr4.1:22617557-22617576 | MS.gene26588:CDS | 30.0% | |
| TCAATTTGATTGTGAAGTGT+CGG | + | chr4.1:22614787-22614806 | None:intergenic | 30.0% | |
| TGATTTATTAAGGTGGATGA+AGG | + | chr4.1:22616817-22616836 | None:intergenic | 30.0% | |
| TGTGACCAAAGAAAATTTCT+TGG | - | chr4.1:22616394-22616413 | MS.gene26588:intron | 30.0% | |
| TTGTCTTTACATGTTGCAAA+GGG | - | chr4.1:22617505-22617524 | MS.gene26588:CDS | 30.0% | |
| TTTGGAAGGGAAAAAATTGT+TGG | + | chr4.1:22617114-22617133 | None:intergenic | 30.0% | |
| TTTGTCTTTACATGTTGCAA+AGG | - | chr4.1:22617504-22617523 | MS.gene26588:CDS | 30.0% | |
| ! | AAATTATCAAAGAGCGTGAA+AGG | + | chr4.1:22615690-22615709 | None:intergenic | 30.0% |
| ! | AATTATCAAAGAGCGTGAAA+GGG | + | chr4.1:22615689-22615708 | None:intergenic | 30.0% |
| ! | ATTTCTATAATGGTGATGTG+GGG | - | chr4.1:22616499-22616518 | MS.gene26588:intron | 30.0% |
| ! | TACTGATTGCTAAAGTCAAA+CGG | - | chr4.1:22615848-22615867 | MS.gene26588:intron | 30.0% |
| ! | TATTGACAATATTTTCCCTC+AGG | + | chr4.1:22615336-22615355 | None:intergenic | 30.0% |
| !! | AATCAAGCTTTGGATAACTT+TGG | - | chr4.1:22614383-22614402 | MS.gene26588:CDS | 30.0% |
| !! | AATTTGATTTTGTGGGTCAA+TGG | - | chr4.1:22617181-22617200 | MS.gene26588:intron | 30.0% |
| !! | ACTGAGTTGATTTATTAAGG+TGG | + | chr4.1:22616824-22616843 | None:intergenic | 30.0% |
| !! | CACTAATGTCAATTTTGACA+AGG | - | chr4.1:22616081-22616100 | MS.gene26588:intron | 30.0% |
| !!! | AGGGAATAGTTTTAATGTTG+AGG | - | chr4.1:22617524-22617543 | MS.gene26588:CDS | 30.0% |
| !!! | ATTGCTTTCAAGTTTTGTTG+TGG | - | chr4.1:22616184-22616203 | MS.gene26588:intron | 30.0% |
| !!! | GACAAGGTATTTTAACTTGA+TGG | - | chr4.1:22616097-22616116 | MS.gene26588:intron | 30.0% |
| !!! | GTGCACTAATTGCTTTTTTA+AGG | + | chr4.1:22617425-22617444 | None:intergenic | 30.0% |
| AAATGTCAACATTGGAAAGC+AGG | - | chr4.1:22617469-22617488 | MS.gene26588:CDS | 35.0% | |
| AAGAACAATGAAAGCAAGGA+AGG | + | chr4.1:22614645-22614664 | None:intergenic | 35.0% | |
| ACGATATTGACCCATAGATT+TGG | + | chr4.1:22614862-22614881 | None:intergenic | 35.0% | |
| ACTTCAACTTCAACTAGTGA+AGG | - | chr4.1:22617443-22617462 | MS.gene26588:CDS | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | - | chr4.1:22615164-22615183 | MS.gene26588:intron | 35.0% | |
| AGAAGAAGGGAGAGAATAAA+TGG | - | chr4.1:22614560-22614579 | MS.gene26588:CDS | 35.0% | |
| AGATGGCAATACAAGCTTTA+AGG | - | chr4.1:22615281-22615300 | MS.gene26588:intron | 35.0% | |
| ATGTCATGGAGACTTAATCA+AGG | + | chr4.1:22616036-22616055 | None:intergenic | 35.0% | |
| ATTGTCATCACCACATTCAT+TGG | - | chr4.1:22614418-22614437 | MS.gene26588:CDS | 35.0% | |
| ATTTCTTAACATGTGCCCTA+AGG | - | chr4.1:22616759-22616778 | MS.gene26588:intron | 35.0% | |
| CAAAGAAAATTTCTTGGTCC+TGG | - | chr4.1:22616400-22616419 | MS.gene26588:intron | 35.0% | |
| CAAATATAATTGGGTACCTG+AGG | - | chr4.1:22615317-22615336 | MS.gene26588:intron | 35.0% | |
| CACATTCTTCTCCTCTTATT+TGG | + | chr4.1:22617645-22617664 | None:intergenic | 35.0% | |
| CTTCACAATCAAATTGAAGG+TGG | - | chr4.1:22614790-22614809 | MS.gene26588:CDS | 35.0% | |
| GCATCATGGTTGTCATTATA+TGG | - | chr4.1:22615807-22615826 | MS.gene26588:intron | 35.0% | |
| GGAGGGAGTAATAGATTTAA+TGG | - | chr4.1:22615190-22615209 | MS.gene26588:intron | 35.0% | |
| TCGTCAAGGTATGATGATTT+GGG | - | chr4.1:22614353-22614372 | MS.gene26588:CDS | 35.0% | |
| TCTATAAAATGCATGTGCTG+TGG | - | chr4.1:22614935-22614954 | MS.gene26588:intron | 35.0% | |
| TCTTTACAAGTCTCGAGAAT+TGG | + | chr4.1:22615552-22615571 | None:intergenic | 35.0% | |
| TGTGACCAAACCAAATTTCT+TGG | + | chr4.1:22616292-22616311 | None:intergenic | 35.0% | |
| TTAAGGTCACATAGTATCTC+AGG | + | chr4.1:22617408-22617427 | None:intergenic | 35.0% | |
| TTCACTTCATCAACTTCTGT+TGG | + | chr4.1:22617312-22617331 | None:intergenic | 35.0% | |
| TTCGTCAAGGTATGATGATT+TGG | - | chr4.1:22614352-22614371 | MS.gene26588:CDS | 35.0% | |
| TTTCTTAACATGTGCCCTAA+GGG | - | chr4.1:22616760-22616779 | MS.gene26588:intron | 35.0% | |
| ! | AACTCAGTTTGTTTGCCATA+TGG | + | chr4.1:22615913-22615932 | None:intergenic | 35.0% |
| ! | AAGACATACCTTTTGATGAG+TGG | + | chr4.1:22614618-22614637 | None:intergenic | 35.0% |
| ! | AATCACTTCAGCAAGTATTG+TGG | + | chr4.1:22617232-22617251 | None:intergenic | 35.0% |
| ! | ACTCAGTTTGTTTGCCATAT+GGG | + | chr4.1:22615912-22615931 | None:intergenic | 35.0% |
| ! | AGCTTCTTTGAAGAACCATA+GGG | - | chr4.1:22614526-22614545 | MS.gene26588:CDS | 35.0% |
| ! | CAGGACCAAGAAATTTTCTT+TGG | + | chr4.1:22616402-22616421 | None:intergenic | 35.0% |
| ! | GTGAGGAACAGATATAGTTT+TGG | - | chr4.1:22615227-22615246 | MS.gene26588:intron | 35.0% |
| ! | TACCAACCTTTTCAGTAACA+GGG | + | chr4.1:22614478-22614497 | None:intergenic | 35.0% |
| ! | TAGCTTCTTTGAAGAACCAT+AGG | - | chr4.1:22614525-22614544 | MS.gene26588:CDS | 35.0% |
| ! | TGAAGTGATTAGTCAAGTGA+AGG | - | chr4.1:22617242-22617261 | MS.gene26588:intron | 35.0% |
| ! | TGGTAAAGATGATGTTTCTG+AGG | - | chr4.1:22614493-22614512 | MS.gene26588:CDS | 35.0% |
| ! | TGGTAACCATGTCTCTTTTA+GGG | - | chr4.1:22614885-22614904 | MS.gene26588:intron | 35.0% |
| ! | TTACCAACCTTTTCAGTAAC+AGG | + | chr4.1:22614479-22614498 | None:intergenic | 35.0% |
| !!! | ATCACCACATTCATTGGTTT+TGG | - | chr4.1:22614424-22614443 | MS.gene26588:CDS | 35.0% |
| AAATGTTGTTCACAAGGCAC+TGG | - | chr4.1:22617563-22617582 | MS.gene26588:CDS | 40.0% | |
| AAGGGATTCTGATTGCATCA+TGG | - | chr4.1:22615793-22615812 | MS.gene26588:intron | 40.0% | |
| AATCTGTGTGAAATGAGCCA+AGG | + | chr4.1:22615005-22615024 | None:intergenic | 40.0% | |
| AATGCAATGGAAGCAAGCAA+AGG | - | chr4.1:22617276-22617295 | MS.gene26588:intron | 40.0% | |
| AGCCAAGGGTTCAGATAAAT+TGG | + | chr4.1:22614990-22615009 | None:intergenic | 40.0% | |
| AGGGTTCAGATAAATTGGGA+CGG | + | chr4.1:22614985-22615004 | None:intergenic | 40.0% | |
| ATATCATCCAGAAGAACACC+TGG | + | chr4.1:22616215-22616234 | None:intergenic | 40.0% | |
| ATCAAGCCCTAAAAGAGACA+TGG | + | chr4.1:22614894-22614913 | None:intergenic | 40.0% | |
| ATCTGTGTGAAATGAGCCAA+GGG | + | chr4.1:22615004-22615023 | None:intergenic | 40.0% | |
| CAAACCAAATTTCTTGGTCC+TGG | + | chr4.1:22616286-22616305 | None:intergenic | 40.0% | |
| CAGGACCAAGAAATTTGGTT+TGG | - | chr4.1:22616284-22616303 | MS.gene26588:intron | 40.0% | |
| CTCTCCAAAACCAATGAATG+TGG | + | chr4.1:22614431-22614450 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | - | chr4.1:22615165-22615184 | MS.gene26588:intron | 40.0% | |
| GAAGGCAGAAATGTCAACAT+TGG | - | chr4.1:22617461-22617480 | MS.gene26588:CDS | 40.0% | |
| GAGAGAATAAATGGTCACCT+TGG | - | chr4.1:22614569-22614588 | MS.gene26588:CDS | 40.0% | |
| GAGAGAGAAGAGAGAGAAAA+TGG | + | chr4.1:22616361-22616380 | None:intergenic | 40.0% | |
| GCCAAGGGTTCAGATAAATT+GGG | + | chr4.1:22614989-22615008 | None:intergenic | 40.0% | |
| GGAAAAGGCTTCTAACTCAA+TGG | - | chr4.1:22617596-22617615 | MS.gene26588:CDS | 40.0% | |
| GGAAAGAGGAAGACAACAAA+TGG | + | chr4.1:22616594-22616613 | None:intergenic | 40.0% | |
| TCCCAATTTATCTGAACCCT+TGG | - | chr4.1:22614985-22615004 | MS.gene26588:intron | 40.0% | |
| TGAACCAGGACCAAGAAATT+TGG | - | chr4.1:22616279-22616298 | MS.gene26588:intron | 40.0% | |
| TGGAAAGTTGAAATTGGGTG+AGG | - | chr4.1:22615210-22615229 | MS.gene26588:intron | 40.0% | |
| TGTAGCTTCCACTCATCAAA+AGG | - | chr4.1:22614607-22614626 | MS.gene26588:CDS | 40.0% | |
| TTCAGATAAATTGGGACGGA+GGG | + | chr4.1:22614981-22615000 | None:intergenic | 40.0% | |
| TTTGGAGAGTGAGAAGGAAA+AGG | - | chr4.1:22614442-22614461 | MS.gene26588:CDS | 40.0% | |
| ! | ATGTGGTGATGACAATCCAT+TGG | + | chr4.1:22614414-22614433 | None:intergenic | 40.0% |
| ! | CTGGTAACCATGTCTCTTTT+AGG | - | chr4.1:22614884-22614903 | MS.gene26588:intron | 40.0% |
| ! | GGGTTTGTTCAATCAAGCTT+TGG | - | chr4.1:22614373-22614392 | MS.gene26588:CDS | 40.0% |
| ! | GTGATTAGTCATGTGTCACA+CGG | + | chr4.1:22617017-22617036 | None:intergenic | 40.0% |
| ! | TGATTAGTCATGTGTCACAC+GGG | + | chr4.1:22617016-22617035 | None:intergenic | 40.0% |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | + | chr4.1:22616777-22616796 | None:intergenic | 40.0% |
| !! | CAATACAAGCTTTAAGGCAG+AGG | - | chr4.1:22615287-22615306 | MS.gene26588:intron | 40.0% |
| !! | GATAACTTTGGAGCTTCCAA+TGG | - | chr4.1:22614395-22614414 | MS.gene26588:CDS | 40.0% |
| !! | GATGATGTTTCTGAGGTGAA+AGG | - | chr4.1:22614500-22614519 | MS.gene26588:CDS | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | + | chr4.1:22616778-22616797 | None:intergenic | 40.0% |
| !! | TATAGGAGTACTGAGGAAAG+AGG | + | chr4.1:22616608-22616627 | None:intergenic | 40.0% |
| !!! | ATTGGTTTTGGAGAGTGAGA+AGG | - | chr4.1:22614436-22614455 | MS.gene26588:CDS | 40.0% |
| ACTGGATTCTGTGCTGGAAA+AGG | - | chr4.1:22617581-22617600 | MS.gene26588:CDS | 45.0% | |
| ATGTGCTGTGGAGATGAGAA+AGG | - | chr4.1:22614947-22614966 | MS.gene26588:intron | 45.0% | |
| CAAGACCACGTAATGTTCCA+AGG | + | chr4.1:22614589-22614608 | None:intergenic | 45.0% | |
| CTATGGGTCAATATCGTGTC+TGG | - | chr4.1:22614865-22614884 | MS.gene26588:intron | 45.0% | |
| CTTCTTCTATGGTCCCAAAC+TGG | - | chr4.1:22615958-22615977 | MS.gene26588:intron | 45.0% | |
| GAGAAACTCTTGTGTGAACC+AGG | - | chr4.1:22616265-22616284 | MS.gene26588:intron | 45.0% | |
| GAGAAATTCTTAGGTGGTCC+AGG | + | chr4.1:22616421-22616440 | None:intergenic | 45.0% | |
| GGTCACATAGTATCTCAGGT+TGG | + | chr4.1:22617404-22617423 | None:intergenic | 45.0% | |
| GTTCAGATAAATTGGGACGG+AGG | + | chr4.1:22614982-22615001 | None:intergenic | 45.0% | |
| TGCCCTGTTACTGAAAAGGT+TGG | - | chr4.1:22614473-22614492 | MS.gene26588:CDS | 45.0% | |
| TGTGCTGTGGAGATGAGAAA+GGG | - | chr4.1:22614948-22614967 | MS.gene26588:intron | 45.0% | |
| !!! | AGTTTTGTTGTGGACATGCC+AGG | - | chr4.1:22616194-22616213 | MS.gene26588:intron | 45.0% |
| !!! | AAATTTAATCATTTTTTTTA+CGG | - | chr4.1:22616959-22616978 | MS.gene26588:intron | 5.0% |
| !!! | AGTAATTATATTTTTTTTTT+TGG | + | chr4.1:22617132-22617151 | None:intergenic | 5.0% |
| !!! | TAAAAAAAATGATTAAATTT+TGG | + | chr4.1:22616959-22616978 | None:intergenic | 5.0% |
| AGAACCATAGGGAAGCAGAG+AGG | - | chr4.1:22614537-22614556 | MS.gene26588:CDS | 50.0% | |
| AGATCCATGGCTGCATGAAG+AGG | + | chr4.1:22617685-22617704 | None:intergenic | 50.0% | |
| ATCTATTACTCCCTCCGTCC+CGG | + | chr4.1:22615186-22615205 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr4.1:22615169-22615188 | MS.gene26588:intron | 50.0% | |
| CACACGGGTGTACATAGAGT+GGG | + | chr4.1:22617001-22617020 | None:intergenic | 50.0% | |
| GAGTGAGAAGGAAAAGGTGG+TGG | - | chr4.1:22614448-22614467 | MS.gene26588:CDS | 50.0% | |
| GGAAGCAGAGAGGAGAAGAA+GGG | - | chr4.1:22614547-22614566 | MS.gene26588:CDS | 50.0% | |
| GGAGAGTGAGAAGGAAAAGG+TGG | - | chr4.1:22614445-22614464 | MS.gene26588:CDS | 50.0% | |
| GGTCACCTTGGAACATTACG+TGG | - | chr4.1:22614581-22614600 | MS.gene26588:CDS | 50.0% | |
| TCACACGGGTGTACATAGAG+TGG | + | chr4.1:22617002-22617021 | None:intergenic | 50.0% | |
| TCTACCTCTTCATGCAGCCA+TGG | - | chr4.1:22617678-22617697 | MS.gene26588:CDS | 50.0% | |
| TTCTCCTCTCTGCTTCCCTA+TGG | + | chr4.1:22614544-22614563 | None:intergenic | 50.0% | |
| ! | GGAGTGCCCTGTTACTGAAA+AGG | - | chr4.1:22614469-22614488 | MS.gene26588:CDS | 50.0% |
| GGACATGCCAGGTGTTCTTC+TGG | - | chr4.1:22616205-22616224 | MS.gene26588:intron | 55.0% | |
| GGGAAGCAGAGAGGAGAAGA+AGG | - | chr4.1:22614546-22614565 | MS.gene26588:CDS | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr4.1:22615173-22615192 | MS.gene26588:intron | 55.0% | |
| !! | CAAGGCACTGGATTCTGTGC+TGG | - | chr4.1:22617575-22617594 | MS.gene26588:CDS | 55.0% |
| GGTCAGATATTCCGGGACGG+AGG | - | chr4.1:22615172-22615191 | MS.gene26588:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 22614323 | 22617716 | 22614323 | ID=MS.gene26588 |
| chr4.1 | mRNA | 22614323 | 22617716 | 22614323 | ID=MS.gene26588.t1;Parent=MS.gene26588 |
| chr4.1 | exon | 22617411 | 22617716 | 22617411 | ID=MS.gene26588.t1.exon1;Parent=MS.gene26588.t1 |
| chr4.1 | CDS | 22617411 | 22617716 | 22617411 | ID=cds.MS.gene26588.t1;Parent=MS.gene26588.t1 |
| chr4.1 | exon | 22614323 | 22614820 | 22614323 | ID=MS.gene26588.t1.exon2;Parent=MS.gene26588.t1 |
| chr4.1 | CDS | 22614323 | 22614820 | 22614323 | ID=cds.MS.gene26588.t1;Parent=MS.gene26588.t1 |
| Gene Sequence |
| Protein sequence |
