Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26613.t1 | XP_013456911.1 | 88.7 | 275 | 19 | 3 | 1 | 270 | 1 | 268 | 1.80E-133 | 485.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26613.t1 | Q9LNB9 | 36.5 | 126 | 71 | 1 | 6 | 131 | 24 | 140 | 4.8e-18 | 93.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26613.t1 | A0A072UMQ1 | 88.7 | 275 | 19 | 3 | 1 | 270 | 1 | 268 | 1.3e-133 | 485.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene26613.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26613.t1 | MTR_4g088035 | 87.273 | 275 | 23 | 3 | 1 | 270 | 1 | 268 | 4.53e-172 | 476 |
MS.gene26613.t1 | MTR_3g073690 | 39.175 | 97 | 59 | 0 | 3 | 99 | 6 | 102 | 2.93e-21 | 89.0 |
MS.gene26613.t1 | MTR_5g083230 | 38.542 | 96 | 59 | 0 | 1 | 96 | 1 | 96 | 1.11e-20 | 86.7 |
MS.gene26613.t1 | MTR_3g071590 | 39.130 | 92 | 56 | 0 | 5 | 96 | 7 | 98 | 1.46e-20 | 86.3 |
MS.gene26613.t1 | MTR_7g033800 | 36.842 | 95 | 60 | 0 | 5 | 99 | 10 | 104 | 1.02e-19 | 84.3 |
MS.gene26613.t1 | MTR_6g011250 | 34.351 | 131 | 67 | 3 | 1 | 112 | 4 | 134 | 3.46e-19 | 83.2 |
MS.gene26613.t1 | MTR_4g083680 | 38.710 | 93 | 57 | 0 | 7 | 99 | 16 | 108 | 6.59e-19 | 82.0 |
MS.gene26613.t1 | MTR_3g031660 | 29.197 | 137 | 85 | 1 | 5 | 129 | 6 | 142 | 1.37e-18 | 81.3 |
MS.gene26613.t1 | MTR_3g077240 | 36.842 | 95 | 60 | 0 | 5 | 99 | 9 | 103 | 2.16e-18 | 81.3 |
MS.gene26613.t1 | MTR_2g068760 | 37.624 | 101 | 62 | 1 | 7 | 106 | 14 | 114 | 2.20e-18 | 80.1 |
MS.gene26613.t1 | MTR_4g105170 | 36.842 | 95 | 60 | 0 | 5 | 99 | 10 | 104 | 2.73e-18 | 80.9 |
MS.gene26613.t1 | MTR_8g079620 | 36.275 | 102 | 58 | 1 | 7 | 101 | 9 | 110 | 1.64e-17 | 79.7 |
MS.gene26613.t1 | MTR_6g005070 | 32.632 | 95 | 64 | 0 | 5 | 99 | 8 | 102 | 1.27e-16 | 75.1 |
MS.gene26613.t1 | MTR_8g040900 | 32.075 | 106 | 58 | 1 | 7 | 98 | 8 | 113 | 2.26e-16 | 76.6 |
MS.gene26613.t1 | MTR_6g005080 | 32.632 | 95 | 64 | 0 | 5 | 99 | 9 | 103 | 3.02e-16 | 73.9 |
MS.gene26613.t1 | MTR_6g011230 | 40.000 | 80 | 48 | 0 | 6 | 85 | 11 | 90 | 3.92e-16 | 75.1 |
MS.gene26613.t1 | MTR_5g017950 | 33.684 | 95 | 63 | 0 | 5 | 99 | 7 | 101 | 6.18e-16 | 76.6 |
MS.gene26613.t1 | MTR_1g095850 | 33.684 | 95 | 63 | 0 | 7 | 101 | 73 | 167 | 8.23e-16 | 75.1 |
MS.gene26613.t1 | MTR_2g093310 | 34.021 | 97 | 64 | 0 | 5 | 101 | 32 | 128 | 8.44e-16 | 74.3 |
MS.gene26613.t1 | MTR_5g083010 | 32.632 | 95 | 64 | 0 | 5 | 99 | 10 | 104 | 1.55e-15 | 73.2 |
MS.gene26613.t1 | MTR_4g060950 | 33.663 | 101 | 66 | 1 | 7 | 106 | 25 | 125 | 1.58e-15 | 73.2 |
MS.gene26613.t1 | MTR_3g094690 | 35.354 | 99 | 61 | 1 | 5 | 100 | 46 | 144 | 3.36e-15 | 73.6 |
MS.gene26613.t1 | MTR_3g452660 | 33.684 | 95 | 63 | 0 | 5 | 99 | 6 | 100 | 3.75e-15 | 73.9 |
MS.gene26613.t1 | MTR_4g099230 | 32.500 | 120 | 69 | 4 | 6 | 113 | 2 | 121 | 4.12e-15 | 71.2 |
MS.gene26613.t1 | MTR_3g071420 | 31.959 | 97 | 66 | 0 | 3 | 99 | 11 | 107 | 4.21e-15 | 72.0 |
MS.gene26613.t1 | MTR_8g079660 | 35.106 | 94 | 61 | 0 | 7 | 100 | 9 | 102 | 6.58e-15 | 73.2 |
MS.gene26613.t1 | MTR_8g017090 | 30.693 | 101 | 70 | 0 | 6 | 106 | 12 | 112 | 8.35e-15 | 73.2 |
MS.gene26613.t1 | MTR_7g028905 | 32.955 | 88 | 59 | 0 | 5 | 92 | 4 | 91 | 2.12e-14 | 68.6 |
MS.gene26613.t1 | MTR_6g027700 | 33.333 | 102 | 64 | 2 | 7 | 104 | 8 | 109 | 3.21e-14 | 70.1 |
MS.gene26613.t1 | MTR_5g083960 | 32.967 | 91 | 61 | 0 | 5 | 95 | 38 | 128 | 3.51e-14 | 69.7 |
MS.gene26613.t1 | MTR_8g079580 | 33.663 | 101 | 59 | 2 | 7 | 99 | 9 | 109 | 4.28e-14 | 70.1 |
MS.gene26613.t1 | MTR_6g011200 | 35.802 | 81 | 51 | 1 | 6 | 85 | 9 | 89 | 5.51e-14 | 70.1 |
MS.gene26613.t1 | MTR_3g094690 | 35.354 | 99 | 60 | 2 | 5 | 100 | 46 | 143 | 1.19e-13 | 68.9 |
MS.gene26613.t1 | MTR_5g080470 | 32.258 | 93 | 62 | 1 | 5 | 96 | 6 | 98 | 1.71e-13 | 67.8 |
MS.gene26613.t1 | MTR_2g100020 | 34.667 | 75 | 49 | 0 | 6 | 80 | 19 | 93 | 1.99e-13 | 68.9 |
MS.gene26613.t1 | MTR_5g093010 | 30.000 | 100 | 63 | 1 | 7 | 99 | 6 | 105 | 2.10e-13 | 66.2 |
MS.gene26613.t1 | MTR_6g027710 | 26.744 | 172 | 99 | 4 | 5 | 168 | 39 | 191 | 5.12e-13 | 67.0 |
MS.gene26613.t1 | MTR_4g107450 | 31.313 | 99 | 68 | 0 | 6 | 104 | 10 | 108 | 7.98e-13 | 67.4 |
MS.gene26613.t1 | MTR_5g075020 | 34.568 | 81 | 53 | 0 | 5 | 85 | 42 | 122 | 1.06e-12 | 66.2 |
MS.gene26613.t1 | MTR_5g075020 | 34.568 | 81 | 53 | 0 | 5 | 85 | 46 | 126 | 1.22e-12 | 66.2 |
MS.gene26613.t1 | MTR_1g070220 | 31.731 | 104 | 69 | 2 | 7 | 108 | 16 | 119 | 2.12e-12 | 65.1 |
MS.gene26613.t1 | MTR_1g070205 | 30.851 | 94 | 64 | 1 | 7 | 99 | 13 | 106 | 1.70e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26613.t1 | AT1G06280 | 41.837 | 98 | 55 | 2 | 6 | 102 | 24 | 120 | 5.41e-23 | 94.0 |
MS.gene26613.t1 | AT3G50510 | 37.895 | 95 | 59 | 0 | 5 | 99 | 11 | 105 | 9.40e-20 | 85.1 |
MS.gene26613.t1 | AT3G50510 | 37.895 | 95 | 59 | 0 | 5 | 99 | 11 | 105 | 9.40e-20 | 85.1 |
MS.gene26613.t1 | AT3G26660 | 32.773 | 119 | 79 | 1 | 2 | 120 | 1 | 118 | 1.54e-19 | 82.4 |
MS.gene26613.t1 | AT3G26620 | 32.143 | 112 | 76 | 0 | 2 | 113 | 1 | 112 | 1.98e-19 | 82.0 |
MS.gene26613.t1 | AT2G30130 | 38.043 | 92 | 57 | 0 | 5 | 96 | 7 | 98 | 2.68e-19 | 83.6 |
MS.gene26613.t1 | AT1G16530 | 38.298 | 94 | 57 | 1 | 7 | 99 | 15 | 108 | 2.82e-18 | 80.1 |
MS.gene26613.t1 | AT5G63090 | 35.789 | 95 | 61 | 0 | 5 | 99 | 10 | 104 | 5.68e-18 | 80.1 |
MS.gene26613.t1 | AT5G63090 | 35.789 | 95 | 61 | 0 | 5 | 99 | 10 | 104 | 5.68e-18 | 80.1 |
MS.gene26613.t1 | AT5G63090 | 35.789 | 95 | 61 | 0 | 5 | 99 | 10 | 104 | 5.68e-18 | 80.1 |
MS.gene26613.t1 | AT5G63090 | 35.789 | 95 | 61 | 0 | 5 | 99 | 10 | 104 | 5.68e-18 | 80.1 |
MS.gene26613.t1 | AT3G27650 | 34.043 | 94 | 62 | 0 | 7 | 100 | 40 | 133 | 2.55e-17 | 77.4 |
MS.gene26613.t1 | AT1G31320 | 35.227 | 88 | 57 | 0 | 5 | 92 | 12 | 99 | 6.52e-16 | 73.9 |
MS.gene26613.t1 | AT5G66870 | 29.032 | 124 | 78 | 1 | 3 | 116 | 4 | 127 | 1.03e-15 | 75.9 |
MS.gene26613.t1 | AT1G72980 | 34.314 | 102 | 67 | 0 | 5 | 106 | 12 | 113 | 1.24e-15 | 74.3 |
MS.gene26613.t1 | AT5G35900 | 30.065 | 153 | 90 | 5 | 2 | 152 | 1 | 138 | 1.27e-15 | 73.9 |
MS.gene26613.t1 | AT3G13850 | 27.320 | 194 | 117 | 6 | 6 | 180 | 36 | 224 | 2.00e-15 | 74.7 |
MS.gene26613.t1 | AT1G65620 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.29e-15 | 73.2 |
MS.gene26613.t1 | AT1G65620 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.29e-15 | 73.2 |
MS.gene26613.t1 | AT1G65620 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.29e-15 | 73.2 |
MS.gene26613.t1 | AT1G65620 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.29e-15 | 73.2 |
MS.gene26613.t1 | AT1G65620 | 31.356 | 118 | 65 | 2 | 5 | 106 | 8 | 125 | 2.29e-15 | 73.2 |
MS.gene26613.t1 | AT2G30340 | 35.789 | 95 | 61 | 0 | 5 | 99 | 52 | 146 | 2.45e-15 | 74.3 |
MS.gene26613.t1 | AT2G30340 | 35.789 | 95 | 61 | 0 | 5 | 99 | 51 | 145 | 3.07e-15 | 73.9 |
MS.gene26613.t1 | AT3G11090 | 31.579 | 95 | 65 | 0 | 3 | 97 | 8 | 102 | 3.67e-15 | 71.6 |
MS.gene26613.t1 | AT1G07900 | 33.684 | 95 | 63 | 0 | 7 | 101 | 34 | 128 | 4.52e-15 | 72.0 |
MS.gene26613.t1 | AT3G47870 | 34.524 | 84 | 55 | 0 | 6 | 89 | 36 | 119 | 5.00e-15 | 74.3 |
MS.gene26613.t1 | AT2G28500 | 33.684 | 95 | 63 | 0 | 7 | 101 | 56 | 150 | 6.90e-15 | 72.4 |
MS.gene26613.t1 | AT2G23660 | 33.010 | 103 | 68 | 1 | 5 | 106 | 4 | 106 | 1.02e-14 | 73.2 |
MS.gene26613.t1 | AT2G23660 | 33.010 | 103 | 68 | 1 | 5 | 106 | 4 | 106 | 1.02e-14 | 73.2 |
MS.gene26613.t1 | AT2G23660 | 33.010 | 103 | 68 | 1 | 5 | 106 | 4 | 106 | 1.02e-14 | 73.2 |
MS.gene26613.t1 | AT2G42430 | 24.599 | 187 | 128 | 5 | 7 | 185 | 16 | 197 | 1.04e-13 | 69.3 |
MS.gene26613.t1 | AT2G40470 | 34.146 | 82 | 54 | 0 | 5 | 86 | 19 | 100 | 3.95e-13 | 67.0 |
MS.gene26613.t1 | AT5G15060 | 35.366 | 82 | 49 | 2 | 7 | 86 | 18 | 97 | 4.21e-13 | 65.5 |
MS.gene26613.t1 | AT2G40470 | 34.146 | 82 | 54 | 0 | 5 | 86 | 44 | 125 | 1.93e-12 | 65.5 |
MS.gene26613.t1 | AT2G42440 | 29.474 | 95 | 66 | 1 | 7 | 100 | 8 | 102 | 4.00e-12 | 65.1 |
MS.gene26613.t1 | AT2G19820 | 35.484 | 93 | 57 | 2 | 2 | 92 | 8 | 99 | 5.19e-12 | 62.0 |
MS.gene26613.t1 | AT4G00220 | 31.868 | 91 | 61 | 1 | 10 | 99 | 21 | 111 | 1.10e-11 | 63.5 |
MS.gene26613.t1 | AT3G03760 | 28.723 | 94 | 66 | 1 | 7 | 99 | 52 | 145 | 4.57e-11 | 62.4 |
MS.gene26613.t1 | AT3G58190 | 27.119 | 177 | 120 | 4 | 7 | 180 | 12 | 182 | 4.78e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTTCTGACCCCAAATTTA+TGG | 0.119750 | 4.1:-22320896 | MS.gene26613:CDS |
TTGGGCAAGACCCATAAATT+TGG | 0.193828 | 4.1:+22320885 | None:intergenic |
CATCCTAAGTATTATTCTTT+TGG | 0.211764 | 4.1:-22320526 | MS.gene26613:CDS |
TATTGAAAGAGAATGAATTT+TGG | 0.212393 | 4.1:+22320866 | None:intergenic |
TTCTTCTTCGTTGGATAATA+AGG | 0.218223 | 4.1:+22321144 | None:intergenic |
CAAAGTCTTGCAAGTAGTTC+TGG | 0.228500 | 4.1:-22320640 | MS.gene26613:CDS |
TCCATACGGATATTCAAAAT+AGG | 0.257950 | 4.1:+22320771 | None:intergenic |
TCCCTGCCTTTGTCTCTTGT+TGG | 0.273999 | 4.1:-22320484 | MS.gene26613:CDS |
TGGGCAAGACCCATAAATTT+GGG | 0.299976 | 4.1:+22320886 | None:intergenic |
TATTCTTGTTTCTTCTTCGT+TGG | 0.359515 | 4.1:+22321135 | None:intergenic |
TCTTCTGACCCCAAATTTAT+GGG | 0.360429 | 4.1:-22320895 | MS.gene26613:CDS |
GTGATGCTAACAATGGAAAT+TGG | 0.377075 | 4.1:-22320843 | MS.gene26613:CDS |
TATTATGACCAATCAACATA+TGG | 0.380266 | 4.1:-22320572 | MS.gene26613:CDS |
TTATTGAACTGTGTTGTTGC+TGG | 0.391668 | 4.1:-22320700 | MS.gene26613:CDS |
TTGTATTCCCATATGTTGAT+TGG | 0.396164 | 4.1:+22320564 | None:intergenic |
CCATACGGATATTCAAAATA+GGG | 0.399569 | 4.1:+22320772 | None:intergenic |
GCACCAAGTGGACCATTGAT+TGG | 0.406811 | 4.1:+22320988 | None:intergenic |
GCATTGTTGTTAGCCACAAA+AGG | 0.411788 | 4.1:+22320805 | None:intergenic |
CCGTATGGAGGAAATAGCTT+TGG | 0.415315 | 4.1:-22320757 | MS.gene26613:CDS |
AAAGTCTTGCAAGTAGTTCT+GGG | 0.449359 | 4.1:-22320639 | MS.gene26613:CDS |
ATAAATTTGGGGTCAGAAGA+TGG | 0.471135 | 4.1:+22320898 | None:intergenic |
CATTGTTGTTAGCCACAAAA+GGG | 0.471171 | 4.1:+22320806 | None:intergenic |
TTTGGTGTTGTCGTTGGAGT+AGG | 0.480154 | 4.1:+22320926 | None:intergenic |
TTGTTGCTGGTGCTAATGTT+TGG | 0.486568 | 4.1:-22320687 | MS.gene26613:CDS |
CACCAAGTGGACCATTGATT+GGG | 0.487901 | 4.1:+22320989 | None:intergenic |
GGTCAGAAGATGGAACAGTT+TGG | 0.523150 | 4.1:+22320908 | None:intergenic |
TGTCCAAAAGAATAATACTT+AGG | 0.524172 | 4.1:+22320523 | None:intergenic |
TGCAAATAATTGTGTTGTGA+AGG | 0.524425 | 4.1:+22320661 | None:intergenic |
GACCCAATCAATGGTCCACT+TGG | 0.526304 | 4.1:-22320991 | MS.gene26613:CDS |
TTCCAACAAGAGACAAAGGC+AGG | 0.528648 | 4.1:+22320482 | None:intergenic |
GAACAGTTTGGTGTTGTCGT+TGG | 0.529232 | 4.1:+22320920 | None:intergenic |
ATTATGACCAATCAACATAT+GGG | 0.537091 | 4.1:-22320571 | MS.gene26613:CDS |
TGGAAACAAGACCCAATCAA+TGG | 0.537301 | 4.1:-22321000 | MS.gene26613:CDS |
CCAAAGCTATTTCCTCCATA+CGG | 0.542651 | 4.1:+22320757 | None:intergenic |
CTCAGAAACCTTGATGAACA+AGG | 0.552123 | 4.1:-22321066 | MS.gene26613:CDS |
TTCAATAGTGATGCTAACAA+TGG | 0.552245 | 4.1:-22320850 | MS.gene26613:CDS |
GGAAATAGCTTTGGAAGTGT+AGG | 0.563321 | 4.1:-22320748 | MS.gene26613:CDS |
TGTAGGTGCTTTGCAAAATG+AGG | 0.574107 | 4.1:-22320731 | MS.gene26613:CDS |
TTGATTGGGAAGCAAAGATG+TGG | 0.575226 | 4.1:-22321020 | MS.gene26613:CDS |
TTCCCAATCAAAAGACTCGA+TGG | 0.576338 | 4.1:+22321032 | None:intergenic |
AATCAACATATGGGAATACA+AGG | 0.587851 | 4.1:-22320562 | MS.gene26613:CDS |
TCAATTCCAACAAGAGACAA+AGG | 0.608888 | 4.1:+22320478 | None:intergenic |
TCGTTGGATAATAAGGAGCA+AGG | 0.613164 | 4.1:+22321151 | None:intergenic |
GGGCAAGACCCATAAATTTG+GGG | 0.616540 | 4.1:+22320887 | None:intergenic |
CATATGGGAATACAAGGAGA+AGG | 0.632124 | 4.1:-22320556 | MS.gene26613:CDS |
GCAGGGAAAAGAATGACTTA+CGG | 0.636274 | 4.1:+22320500 | None:intergenic |
TCCAACAAGAGACAAAGGCA+GGG | 0.647739 | 4.1:+22320483 | None:intergenic |
ATTGTTGTTAGCCACAAAAG+GGG | 0.649584 | 4.1:+22320807 | None:intergenic |
TTCTGGGACTAACGTGACGG+TGG | 0.658470 | 4.1:-22320623 | MS.gene26613:CDS |
GCTTCAGTGAATGCACCAAG+TGG | 0.660474 | 4.1:+22320976 | None:intergenic |
TAGTTCTGGGACTAACGTGA+CGG | 0.692517 | 4.1:-22320626 | MS.gene26613:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGTTTTTGGTTACAAAAAAT+TGG | - | chr4.1:22320545-22320564 | MS.gene26613:CDS | 20.0% |
!!! | ATTGAAAGAGAATGAATTTT+GGG | + | chr4.1:22320778-22320797 | None:intergenic | 20.0% |
!!! | TATTGAAAGAGAATGAATTT+TGG | + | chr4.1:22320779-22320798 | None:intergenic | 20.0% |
! | ATTATGACCAATCAACATAT+GGG | - | chr4.1:22321071-22321090 | MS.gene26613:CDS | 25.0% |
! | TATTATGACCAATCAACATA+TGG | - | chr4.1:22321070-22321089 | MS.gene26613:CDS | 25.0% |
! | TGTCCAAAAGAATAATACTT+AGG | + | chr4.1:22321122-22321141 | None:intergenic | 25.0% |
!! | CATCCTAAGTATTATTCTTT+TGG | - | chr4.1:22321116-22321135 | MS.gene26613:CDS | 25.0% |
AACCAAAAACTTTGTGAACA+AGG | + | chr4.1:22320536-22320555 | None:intergenic | 30.0% | |
AATCAACATATGGGAATACA+AGG | - | chr4.1:22321080-22321099 | MS.gene26613:CDS | 30.0% | |
CCATACGGATATTCAAAATA+GGG | + | chr4.1:22320873-22320892 | None:intergenic | 30.0% | |
GAAAAAGATGCCAAAGAAAA+TGG | + | chr4.1:22321200-22321219 | None:intergenic | 30.0% | |
TCCATACGGATATTCAAAAT+AGG | + | chr4.1:22320874-22320893 | None:intergenic | 30.0% | |
TGCAAATAATTGTGTTGTGA+AGG | + | chr4.1:22320984-22321003 | None:intergenic | 30.0% | |
TTCAATAGTGATGCTAACAA+TGG | - | chr4.1:22320792-22320811 | MS.gene26613:CDS | 30.0% | |
TTCTTCTTCGTTGGATAATA+AGG | + | chr4.1:22320501-22320520 | None:intergenic | 30.0% | |
TTGTATTCCCATATGTTGAT+TGG | + | chr4.1:22321081-22321100 | None:intergenic | 30.0% | |
! | TATTCTTGTTTCTTCTTCGT+TGG | + | chr4.1:22320510-22320529 | None:intergenic | 30.0% |
! | TATTTGTGCACCATTTTCTT+TGG | - | chr4.1:22321187-22321206 | MS.gene26613:CDS | 30.0% |
! | TTTTTCTTCCTTGTTCATCA+AGG | + | chr4.1:22320587-22320606 | None:intergenic | 30.0% |
!! | TATTTTGAATATCCGTATGG+AGG | - | chr4.1:22320873-22320892 | MS.gene26613:CDS | 30.0% |
!!! | CTTTCATGCACTTTTTCTTT+TGG | + | chr4.1:22320464-22320483 | None:intergenic | 30.0% |
!!! | TTTTTCTTTTGGTGTCTACA+AGG | + | chr4.1:22320453-22320472 | None:intergenic | 30.0% |
AAAGTCTTGCAAGTAGTTCT+GGG | - | chr4.1:22321003-22321022 | MS.gene26613:CDS | 35.0% | |
ATCTTCTGACCCCAAATTTA+TGG | - | chr4.1:22320746-22320765 | MS.gene26613:CDS | 35.0% | |
GTGATGCTAACAATGGAAAT+TGG | - | chr4.1:22320799-22320818 | MS.gene26613:CDS | 35.0% | |
TCAATTCCAACAAGAGACAA+AGG | + | chr4.1:22321167-22321186 | None:intergenic | 35.0% | |
TCTTCTGACCCCAAATTTAT+GGG | - | chr4.1:22320747-22320766 | MS.gene26613:CDS | 35.0% | |
! | ATAAATTTGGGGTCAGAAGA+TGG | + | chr4.1:22320747-22320766 | None:intergenic | 35.0% |
! | ATTGTTGTTAGCCACAAAAG+GGG | + | chr4.1:22320838-22320857 | None:intergenic | 35.0% |
! | CATTGTTGTTAGCCACAAAA+GGG | + | chr4.1:22320839-22320858 | None:intergenic | 35.0% |
! | GACCTTGTTCACAAAGTTTT+TGG | - | chr4.1:22320531-22320550 | MS.gene26613:CDS | 35.0% |
! | TTATTGAACTGTGTTGTTGC+TGG | - | chr4.1:22320942-22320961 | MS.gene26613:CDS | 35.0% |
!! | CCCTATTTTGAATATCCGTA+TGG | - | chr4.1:22320870-22320889 | MS.gene26613:CDS | 35.0% |
!!! | TGGAAATTGGTCTTCTTTTG+AGG | - | chr4.1:22320812-22320831 | MS.gene26613:CDS | 35.0% |
CAAAGTCTTGCAAGTAGTTC+TGG | - | chr4.1:22321002-22321021 | MS.gene26613:CDS | 40.0% | |
CATATGGGAATACAAGGAGA+AGG | - | chr4.1:22321086-22321105 | MS.gene26613:CDS | 40.0% | |
CTCAGAAACCTTGATGAACA+AGG | - | chr4.1:22320576-22320595 | MS.gene26613:CDS | 40.0% | |
GCAGGGAAAAGAATGACTTA+CGG | + | chr4.1:22321145-22321164 | None:intergenic | 40.0% | |
TCGTTGGATAATAAGGAGCA+AGG | + | chr4.1:22320494-22320513 | None:intergenic | 40.0% | |
TGGAAACAAGACCCAATCAA+TGG | - | chr4.1:22320642-22320661 | MS.gene26613:CDS | 40.0% | |
TGGGCAAGACCCATAAATTT+GGG | + | chr4.1:22320759-22320778 | None:intergenic | 40.0% | |
TGTAGGTGCTTTGCAAAATG+AGG | - | chr4.1:22320911-22320930 | MS.gene26613:CDS | 40.0% | |
TTCCCAATCAAAAGACTCGA+TGG | + | chr4.1:22320613-22320632 | None:intergenic | 40.0% | |
TTGATTGGGAAGCAAAGATG+TGG | - | chr4.1:22320622-22320641 | MS.gene26613:CDS | 40.0% | |
TTGGGCAAGACCCATAAATT+TGG | + | chr4.1:22320760-22320779 | None:intergenic | 40.0% | |
! | AAGCCATCGAGTCTTTTGAT+TGG | - | chr4.1:22320607-22320626 | MS.gene26613:CDS | 40.0% |
! | CCAAAGCTATTTCCTCCATA+CGG | + | chr4.1:22320888-22320907 | None:intergenic | 40.0% |
! | GCATTGTTGTTAGCCACAAA+AGG | + | chr4.1:22320840-22320859 | None:intergenic | 40.0% |
! | TTGTTGCTGGTGCTAATGTT+TGG | - | chr4.1:22320955-22320974 | MS.gene26613:CDS | 40.0% |
!! | AGCCATCGAGTCTTTTGATT+GGG | - | chr4.1:22320608-22320627 | MS.gene26613:CDS | 40.0% |
!! | GGAAATAGCTTTGGAAGTGT+AGG | - | chr4.1:22320894-22320913 | MS.gene26613:CDS | 40.0% |
CCGTATGGAGGAAATAGCTT+TGG | - | chr4.1:22320885-22320904 | MS.gene26613:CDS | 45.0% | |
GGGCAAGACCCATAAATTTG+GGG | + | chr4.1:22320758-22320777 | None:intergenic | 45.0% | |
GGTCAGAAGATGGAACAGTT+TGG | + | chr4.1:22320737-22320756 | None:intergenic | 45.0% | |
TCCAACAAGAGACAAAGGCA+GGG | + | chr4.1:22321162-22321181 | None:intergenic | 45.0% | |
TTCCAACAAGAGACAAAGGC+AGG | + | chr4.1:22321163-22321182 | None:intergenic | 45.0% | |
! | CACCAAGTGGACCATTGATT+GGG | + | chr4.1:22320656-22320675 | None:intergenic | 45.0% |
!! | GAACAGTTTGGTGTTGTCGT+TGG | + | chr4.1:22320725-22320744 | None:intergenic | 45.0% |
!! | TAGTTCTGGGACTAACGTGA+CGG | - | chr4.1:22321016-22321035 | MS.gene26613:CDS | 45.0% |
!! | TTTGGTGTTGTCGTTGGAGT+AGG | + | chr4.1:22320719-22320738 | None:intergenic | 45.0% |
!!! | TTCTTTTGAGGCCCCTTTTG+TGG | - | chr4.1:22320824-22320843 | MS.gene26613:CDS | 45.0% |
GACCCAATCAATGGTCCACT+TGG | - | chr4.1:22320651-22320670 | MS.gene26613:CDS | 50.0% | |
GCACCAAGTGGACCATTGAT+TGG | + | chr4.1:22320657-22320676 | None:intergenic | 50.0% | |
GCTTCAGTGAATGCACCAAG+TGG | + | chr4.1:22320669-22320688 | None:intergenic | 50.0% | |
TCCCTGCCTTTGTCTCTTGT+TGG | - | chr4.1:22321158-22321177 | MS.gene26613:CDS | 50.0% | |
!! | TTCTGGGACTAACGTGACGG+TGG | - | chr4.1:22321019-22321038 | MS.gene26613:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 22320426 | 22321238 | 22320426 | ID=MS.gene26613 |
chr4.1 | mRNA | 22320426 | 22321238 | 22320426 | ID=MS.gene26613.t1;Parent=MS.gene26613 |
chr4.1 | exon | 22320426 | 22321238 | 22320426 | ID=MS.gene26613.t1.exon1;Parent=MS.gene26613.t1 |
chr4.1 | CDS | 22320426 | 22321238 | 22320426 | ID=cds.MS.gene26613.t1;Parent=MS.gene26613.t1 |
Gene Sequence |
Protein sequence |