Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26660.t1 | XP_024637842.1 | 82.9 | 222 | 8 | 1 | 1 | 192 | 1 | 222 | 1.30E-93 | 352.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26660.t1 | F4HY56 | 42.6 | 242 | 80 | 6 | 4 | 189 | 2 | 240 | 4.0e-35 | 149.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26660.t1 | A0A396IC38 | 82.9 | 222 | 8 | 1 | 1 | 192 | 1 | 222 | 9.3e-94 | 352.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26660.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26660.t1 | MTR_4g088375 | 81.517 | 211 | 8 | 2 | 12 | 192 | 12 | 221 | 5.21e-109 | 342 |
| MS.gene26660.t1 | MTR_4g088375 | 81.517 | 211 | 8 | 2 | 12 | 192 | 12 | 221 | 5.22e-109 | 342 |
| MS.gene26660.t1 | MTR_4g088375 | 81.517 | 211 | 8 | 2 | 12 | 192 | 12 | 221 | 7.28e-109 | 341 |
| MS.gene26660.t1 | MTR_2g014490 | 62.000 | 200 | 47 | 4 | 22 | 192 | 31 | 230 | 1.03e-68 | 227 |
| MS.gene26660.t1 | MTR_2g014490 | 62.000 | 200 | 47 | 4 | 22 | 192 | 31 | 230 | 1.09e-68 | 227 |
| MS.gene26660.t1 | MTR_4g078860 | 44.162 | 197 | 69 | 6 | 28 | 183 | 16 | 212 | 4.06e-36 | 133 |
| MS.gene26660.t1 | MTR_4g078860 | 44.162 | 197 | 69 | 6 | 28 | 183 | 16 | 212 | 4.35e-36 | 133 |
| MS.gene26660.t1 | MTR_4g078860 | 44.162 | 197 | 69 | 6 | 28 | 183 | 16 | 212 | 7.09e-36 | 133 |
| MS.gene26660.t1 | MTR_4g078860 | 44.162 | 197 | 69 | 6 | 28 | 183 | 16 | 212 | 7.18e-36 | 133 |
| MS.gene26660.t1 | MTR_5g089870 | 53.571 | 56 | 26 | 0 | 33 | 88 | 20 | 75 | 7.33e-15 | 72.4 |
| MS.gene26660.t1 | MTR_3g045830 | 50.909 | 55 | 27 | 0 | 34 | 88 | 21 | 75 | 9.53e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26660.t1 | AT1G28420 | 46.190 | 210 | 64 | 5 | 26 | 189 | 34 | 240 | 1.79e-44 | 157 |
| MS.gene26660.t1 | AT5G44180 | 43.850 | 187 | 77 | 4 | 29 | 189 | 15 | 199 | 1.94e-39 | 143 |
| MS.gene26660.t1 | AT5G44180 | 43.850 | 187 | 77 | 4 | 29 | 189 | 15 | 199 | 2.08e-39 | 143 |
| MS.gene26660.t1 | AT5G44180 | 43.850 | 187 | 77 | 4 | 29 | 189 | 15 | 199 | 2.08e-39 | 143 |
| MS.gene26660.t1 | AT4G03250 | 42.500 | 80 | 42 | 1 | 10 | 89 | 2 | 77 | 5.52e-14 | 69.7 |
Find 76 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGATTTGTCTGAGAAAT+TGG | 0.144437 | 4.1:-21938613 | MS.gene26660:CDS |
| CCGTGGCGGCACCACCTTCT+TGG | 0.148215 | 4.1:+21938521 | None:intergenic |
| GATGCATTTGGGGCACTTAT+AGG | 0.267094 | 4.1:-21938232 | MS.gene26660:intron |
| CCATTGCCACCGGATGCATT+TGG | 0.275912 | 4.1:-21938244 | MS.gene26660:CDS |
| GCTTATGACGGTAAAATATA+TGG | 0.303678 | 4.1:-21937403 | MS.gene26660:CDS |
| CATTGCCACCGGATGCATTT+GGG | 0.321417 | 4.1:-21938243 | MS.gene26660:CDS |
| TCGAACTCTACTCCTATAAT+TGG | 0.321639 | 4.1:+21938268 | None:intergenic |
| ATAGATTTGTCTGAGAAATT+GGG | 0.322970 | 4.1:-21938612 | MS.gene26660:CDS |
| AAGCAAGACGAGGTCGCTTC+TGG | 0.325403 | 4.1:+21937422 | None:intergenic |
| AGGGAGGATGCACCAATTAT+AGG | 0.325819 | 4.1:-21938280 | MS.gene26660:CDS |
| CGTGGCGGCACCACCTTCTT+GGG | 0.333145 | 4.1:+21938522 | None:intergenic |
| GCCTGTGGTTCAGCCTTTGC+CGG | 0.356317 | 4.1:-21938496 | MS.gene26660:CDS |
| GTCTGAGAAATTGGGGTTGA+CGG | 0.392863 | 4.1:-21938604 | MS.gene26660:CDS |
| AGGGAGAGAGTGATCGGAAA+AGG | 0.407258 | 4.1:-21938897 | MS.gene26660:CDS |
| AGGCTTACTCTGCCCCTCAT+TGG | 0.410523 | 4.1:+21938843 | None:intergenic |
| TCAGCCTTTGCCGGATTCCC+CGG | 0.426296 | 4.1:-21938487 | MS.gene26660:CDS |
| TGATCATCCACCGGGGAATC+CGG | 0.426382 | 4.1:+21938477 | None:intergenic |
| TGAGTCCCCTCAGGATGAAA+TGG | 0.439651 | 4.1:-21938350 | MS.gene26660:intron |
| TGCAGATGTGGTTCTGTCAT+AGG | 0.441916 | 4.1:-21938572 | MS.gene26660:CDS |
| TAGGAGGTTGAAGGATAAGA+AGG | 0.444980 | 4.1:-21938553 | MS.gene26660:CDS |
| GGGAGAGAGTGATCGGAAAA+GGG | 0.455311 | 4.1:-21938896 | MS.gene26660:CDS |
| TCTATCCTCACCGGCTCTGA+AGG | 0.456529 | 4.1:+21938630 | None:intergenic |
| GATGGAAGGTGAAGGTAGTT+CGG | 0.485460 | 4.1:-21938920 | MS.gene26660:CDS |
| AAAAGGGGTGGTGCAGATGA+TGG | 0.490000 | 4.1:-21938880 | MS.gene26660:CDS |
| GGAGAGAGTGATCGGAAAAG+GGG | 0.491151 | 4.1:-21938895 | MS.gene26660:CDS |
| CGGATCGGCAGTTGCAGATG+TGG | 0.492519 | 4.1:-21938584 | MS.gene26660:CDS |
| AAAATTGCTGTTTCCAATGA+GGG | 0.496793 | 4.1:-21938856 | MS.gene26660:CDS |
| TCTAGGGTTTCAAGCTGAAA+CGG | 0.507096 | 4.1:+21938802 | None:intergenic |
| TAGATTTGTCTGAGAAATTG+GGG | 0.508540 | 4.1:-21938611 | MS.gene26660:CDS |
| CCAAATGCATCCGGTGGCAA+TGG | 0.510293 | 4.1:+21938244 | None:intergenic |
| TCCGGCAAAGGCTGAACCAC+AGG | 0.511181 | 4.1:+21938495 | None:intergenic |
| ATTGGTGCATCCTCCCTCAA+TGG | 0.519341 | 4.1:+21938286 | None:intergenic |
| CCCATCCTGTGATCATCCAC+CGG | 0.522966 | 4.1:+21938468 | None:intergenic |
| CCATCCTGTGATCATCCACC+GGG | 0.523980 | 4.1:+21938469 | None:intergenic |
| ATCAGTTAGGTGAACCATTG+AGG | 0.526705 | 4.1:-21938300 | MS.gene26660:CDS |
| ATTGCCACCGGATGCATTTG+GGG | 0.527290 | 4.1:-21938242 | MS.gene26660:CDS |
| GCTTGTGTGGAGGATCAGTT+AGG | 0.532850 | 4.1:-21938313 | MS.gene26660:CDS |
| AGAAATTGGGGTTGACGGAT+CGG | 0.536879 | 4.1:-21938599 | MS.gene26660:CDS |
| TCAGTTAGGTGAACCATTGA+GGG | 0.541387 | 4.1:-21938299 | MS.gene26660:CDS |
| GGCTGAACCACAGGCTTCCG+TGG | 0.541562 | 4.1:+21938504 | None:intergenic |
| GAAGGTGAAGGTAGTTCGGA+GGG | 0.542625 | 4.1:-21938916 | MS.gene26660:CDS |
| CCAAGAAGGTGGTGCCGCCA+CGG | 0.542666 | 4.1:-21938521 | MS.gene26660:CDS |
| CAAAATTGCTGTTTCCAATG+AGG | 0.543592 | 4.1:-21938857 | MS.gene26660:CDS |
| GTTCGGAGGGAGAGAGTGAT+CGG | 0.552413 | 4.1:-21938903 | MS.gene26660:CDS |
| TGGTTATTATGAGTCCCCTC+AGG | 0.552580 | 4.1:-21938359 | MS.gene26660:intron |
| ATAAGTGCCCCAAATGCATC+CGG | 0.553483 | 4.1:+21938235 | None:intergenic |
| CCCGGTGGATGATCACAGGA+TGG | 0.556684 | 4.1:-21938469 | MS.gene26660:CDS |
| CCGGTGGATGATCACAGGAT+GGG | 0.570626 | 4.1:-21938468 | MS.gene26660:CDS |
| TCCACCGGGGAATCCGGCAA+AGG | 0.578330 | 4.1:+21938483 | None:intergenic |
| ATTCCCCGGTGGATGATCAC+AGG | 0.578456 | 4.1:-21938473 | MS.gene26660:CDS |
| GCTTAGAGCAATTGCTTGTG+TGG | 0.583221 | 4.1:-21938326 | MS.gene26660:CDS |
| TAAGCTCCATTTCATCCTGA+GGG | 0.585882 | 4.1:+21938344 | None:intergenic |
| CTAAGCTCCATTTCATCCTG+AGG | 0.588163 | 4.1:+21938343 | None:intergenic |
| CTATCCTCACCGGCTCTGAA+GGG | 0.588722 | 4.1:+21938631 | None:intergenic |
| GGATAATTACCCTTCAGAGC+CGG | 0.592084 | 4.1:-21938640 | MS.gene26660:CDS |
| AGAGTTCGATCCATTGCCAC+CGG | 0.595348 | 4.1:-21938254 | MS.gene26660:CDS |
| GAAGGAGTCTGCTCCCAAGA+AGG | 0.597682 | 4.1:-21938535 | MS.gene26660:CDS |
| GTTCTGTCATAGGAGGTTGA+AGG | 0.597689 | 4.1:-21938562 | MS.gene26660:CDS |
| TAGAGCAATTGCTTGTGTGG+AGG | 0.601858 | 4.1:-21938323 | MS.gene26660:CDS |
| GCCTTTGCCGGATTCCCCGG+TGG | 0.611126 | 4.1:-21938484 | MS.gene26660:CDS |
| GAGAGTGATCGGAAAAGGGG+TGG | 0.614009 | 4.1:-21938892 | MS.gene26660:CDS |
| GGTGCCGCCACGGAAGCCTG+TGG | 0.618031 | 4.1:-21938511 | MS.gene26660:CDS |
| TCAGACAAATCTATCCTCAC+CGG | 0.619274 | 4.1:+21938621 | None:intergenic |
| TCACAGGATGGGTTTGAGCA+TGG | 0.624690 | 4.1:-21938457 | MS.gene26660:intron |
| AAATTGCTGTTTCCAATGAG+GGG | 0.631124 | 4.1:-21938855 | MS.gene26660:CDS |
| AGATGTGGTTCTGTCATAGG+AGG | 0.638175 | 4.1:-21938569 | MS.gene26660:CDS |
| GGAGTCTGCTCCCAAGAAGG+TGG | 0.639219 | 4.1:-21938532 | MS.gene26660:CDS |
| GGAAGGTGAAGGTAGTTCGG+AGG | 0.640834 | 4.1:-21938917 | MS.gene26660:CDS |
| CGACCTCGTCTTGCTTATGA+CGG | 0.649743 | 4.1:-21937415 | MS.gene26660:CDS |
| GTTAGGTGAACCATTGAGGG+AGG | 0.671886 | 4.1:-21938296 | MS.gene26660:CDS |
| AGTGCCCCAAATGCATCCGG+TGG | 0.686518 | 4.1:+21938238 | None:intergenic |
| TGAACCACAGGCTTCCGTGG+CGG | 0.692610 | 4.1:+21938507 | None:intergenic |
| AAGCTCCATTTCATCCTGAG+GGG | 0.706202 | 4.1:+21938345 | None:intergenic |
| ATTACCCTTCAGAGCCGGTG+AGG | 0.718129 | 4.1:-21938635 | MS.gene26660:CDS |
| TTACCGTCATAAGCAAGACG+AGG | 0.727905 | 4.1:+21937412 | None:intergenic |
| CATCCTGTGATCATCCACCG+GGG | 0.810049 | 4.1:+21938470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTGTTTTGTTCTAT+AGG | + | chr4.1:21938505-21938524 | None:intergenic | 15.0% |
| !!! | TTGATAATTATATTGTGTTT+TGG | - | chr4.1:21937603-21937622 | MS.gene26660:intron | 15.0% |
| !! | GATCCAAAAAACATATATAA+CGG | + | chr4.1:21938840-21938859 | None:intergenic | 20.0% |
| !! | TGCACATATATTTAAAAACA+TGG | + | chr4.1:21938331-21938350 | None:intergenic | 20.0% |
| !! | TTGCTTGAAACATAATATAA+TGG | - | chr4.1:21938754-21938773 | MS.gene26660:intron | 20.0% |
| !!! | AATGTGCTTTCTATTTTATA+TGG | - | chr4.1:21938660-21938679 | MS.gene26660:intron | 20.0% |
| !!! | ATATTGTGTTTTGGTTAATT+TGG | - | chr4.1:21937612-21937631 | MS.gene26660:intron | 20.0% |
| !!! | ATGTAATGCATTTTTATTTC+TGG | - | chr4.1:21938260-21938279 | MS.gene26660:CDS | 20.0% |
| !!! | TCTTAATTTAACTTGCTTAT+TGG | - | chr4.1:21938132-21938151 | MS.gene26660:intron | 20.0% |
| !!! | TGCATTACATTTTCTAAAAT+CGG | + | chr4.1:21938250-21938269 | None:intergenic | 20.0% |
| !!! | TTCAAAAAAAATTGGCTTAT+TGG | - | chr4.1:21938160-21938179 | MS.gene26660:intron | 20.0% |
| ! | AAACAAAAATGCTTTCTGAT+TGG | + | chr4.1:21938531-21938550 | None:intergenic | 25.0% |
| ! | AAGTTCTTCAATTCATCAAT+TGG | - | chr4.1:21937534-21937553 | MS.gene26660:intron | 25.0% |
| ! | AGTTCTTCAATTCATCAATT+GGG | - | chr4.1:21937535-21937554 | MS.gene26660:intron | 25.0% |
| ! | ATAGATTTGTCTGAGAAATT+GGG | - | chr4.1:21937685-21937704 | MS.gene26660:intron | 25.0% |
| ! | CTAAAAAGATGTAAAATGCA+AGG | + | chr4.1:21938199-21938218 | None:intergenic | 25.0% |
| !! | CTCTATAAATCTCTGAAAAA+CGG | - | chr4.1:21938402-21938421 | MS.gene26660:intron | 25.0% |
| !! | CTTGCATTTTACATCTTTTT+AGG | - | chr4.1:21938197-21938216 | MS.gene26660:intron | 25.0% |
| !! | TGGACTTGTTCAAAAAAAAT+TGG | - | chr4.1:21938152-21938171 | MS.gene26660:intron | 25.0% |
| !!! | CTTCCGTTATATATGTTTTT+TGG | - | chr4.1:21938834-21938853 | MS.gene26660:CDS | 25.0% |
| !!! | CTTGTGCAAAATTTTGAAAA+TGG | + | chr4.1:21938580-21938599 | None:intergenic | 25.0% |
| CAGTCTTAGTCTCTTATATA+TGG | + | chr4.1:21938713-21938732 | None:intergenic | 30.0% | |
| GATAGATTTGTCTGAGAAAT+TGG | - | chr4.1:21937684-21937703 | MS.gene26660:intron | 30.0% | |
| GCTTATGACGGTAAAATATA+TGG | - | chr4.1:21938894-21938913 | MS.gene26660:CDS | 30.0% | |
| TAGATTTGTCTGAGAAATTG+GGG | - | chr4.1:21937686-21937705 | MS.gene26660:intron | 30.0% | |
| ! | CAACCATTTTCTGTTTGATT+GGG | + | chr4.1:21938440-21938459 | None:intergenic | 30.0% |
| ! | TCAACCATTTTCTGTTTGAT+TGG | + | chr4.1:21938441-21938460 | None:intergenic | 30.0% |
| !! | AAAATTGCTGTTTCCAATGA+GGG | - | chr4.1:21937441-21937460 | MS.gene26660:intron | 30.0% |
| !! | ACAAGCATAAGCTTTTTCTA+GGG | + | chr4.1:21937514-21937533 | None:intergenic | 30.0% |
| !! | CGTTTTTCAGAGATTTATAG+AGG | + | chr4.1:21938404-21938423 | None:intergenic | 30.0% |
| !! | TACAAGCATAAGCTTTTTCT+AGG | + | chr4.1:21937515-21937534 | None:intergenic | 30.0% |
| !!! | GATGTTTTTGGTTTGATTAG+TGG | - | chr4.1:21937636-21937655 | MS.gene26660:intron | 30.0% |
| !!! | GGTTAATTTGGTGATGTTTT+TGG | - | chr4.1:21937624-21937643 | MS.gene26660:intron | 30.0% |
| !!! | TACATTTTCTAAAATCGGAC+AGG | + | chr4.1:21938245-21938264 | None:intergenic | 30.0% |
| ATATGTGCAGTTAACACTGA+AGG | - | chr4.1:21938342-21938361 | MS.gene26660:CDS | 35.0% | |
| TAGCCCAATCAAACAGAAAA+TGG | - | chr4.1:21938434-21938453 | MS.gene26660:intron | 35.0% | |
| TCGAACTCTACTCCTATAAT+TGG | + | chr4.1:21938032-21938051 | None:intergenic | 35.0% | |
| TGGACAACAAAGTTCAAAAC+AGG | + | chr4.1:21938560-21938579 | None:intergenic | 35.0% | |
| ! | ATGGTAATGAGTATGACTCA+GGG | - | chr4.1:21937859-21937878 | MS.gene26660:intron | 35.0% |
| ! | GACAGGTCTTAGTATTTTCA+TGG | + | chr4.1:21938228-21938247 | None:intergenic | 35.0% |
| !! | AAATTGCTGTTTCCAATGAG+GGG | - | chr4.1:21937442-21937461 | MS.gene26660:intron | 35.0% |
| !! | CAAAATTGCTGTTTCCAATG+AGG | - | chr4.1:21937440-21937459 | MS.gene26660:intron | 35.0% |
| AGGAAGCAGTAAAGTGAAAC+AGG | + | chr4.1:21938473-21938492 | None:intergenic | 40.0% | |
| AGTGCATGCAATACCATGTT+CGG | - | chr4.1:21938802-21938821 | MS.gene26660:CDS | 40.0% | |
| ATCAGTTAGGTGAACCATTG+AGG | - | chr4.1:21937997-21938016 | MS.gene26660:intron | 40.0% | |
| GCACATTTGTGACAAGATAG+AGG | + | chr4.1:21938647-21938666 | None:intergenic | 40.0% | |
| TAAGCTCCATTTCATCCTGA+GGG | + | chr4.1:21937956-21937975 | None:intergenic | 40.0% | |
| TAATGAGTATGACTCAGGGT+CGG | - | chr4.1:21937863-21937882 | MS.gene26660:intron | 40.0% | |
| TAGGAGGTTGAAGGATAAGA+AGG | - | chr4.1:21937744-21937763 | MS.gene26660:intron | 40.0% | |
| TCAGACAAATCTATCCTCAC+CGG | + | chr4.1:21937679-21937698 | None:intergenic | 40.0% | |
| TCAGTTAGGTGAACCATTGA+GGG | - | chr4.1:21937998-21938017 | MS.gene26660:intron | 40.0% | |
| TGTTCTATAGGACTTGTACC+AGG | + | chr4.1:21938493-21938512 | None:intergenic | 40.0% | |
| TGTTTCACTTTACTGCTTCC+TGG | - | chr4.1:21938472-21938491 | MS.gene26660:CDS | 40.0% | |
| ! | CATGGTAATGAGTATGACTC+AGG | - | chr4.1:21937858-21937877 | MS.gene26660:intron | 40.0% |
| ! | TCTAGGGTTTCAAGCTGAAA+CGG | + | chr4.1:21937498-21937517 | None:intergenic | 40.0% |
| !! | AGAGGCGCTACAATCAATAA+GGG | + | chr4.1:21938629-21938648 | None:intergenic | 40.0% |
| !! | GGTGTTTTCATCTGTCGTTT+AGG | + | chr4.1:21937477-21937496 | None:intergenic | 40.0% |
| !! | TAGAGGCGCTACAATCAATA+AGG | + | chr4.1:21938630-21938649 | None:intergenic | 40.0% |
| AAGCTCCATTTCATCCTGAG+GGG | + | chr4.1:21937955-21937974 | None:intergenic | 45.0% | |
| AATGAGTATGACTCAGGGTC+GGG | - | chr4.1:21937864-21937883 | MS.gene26660:intron | 45.0% | |
| AGGGAGGATGCACCAATTAT+AGG | - | chr4.1:21938017-21938036 | MS.gene26660:intron | 45.0% | |
| ATAAGTGCCCCAAATGCATC+CGG | + | chr4.1:21938065-21938084 | None:intergenic | 45.0% | |
| CTAAGCTCCATTTCATCCTG+AGG | + | chr4.1:21937957-21937976 | None:intergenic | 45.0% | |
| GCTTAGAGCAATTGCTTGTG+TGG | - | chr4.1:21937971-21937990 | MS.gene26660:intron | 45.0% | |
| GGATAATTACCCTTCAGAGC+CGG | - | chr4.1:21937657-21937676 | MS.gene26660:intron | 45.0% | |
| GTCTGAGAAATTGGGGTTGA+CGG | - | chr4.1:21937693-21937712 | MS.gene26660:intron | 45.0% | |
| GTTCTGTCATAGGAGGTTGA+AGG | - | chr4.1:21937735-21937754 | MS.gene26660:intron | 45.0% | |
| TAGAGCAATTGCTTGTGTGG+AGG | - | chr4.1:21937974-21937993 | MS.gene26660:intron | 45.0% | |
| TGGTTATTATGAGTCCCCTC+AGG | - | chr4.1:21937938-21937957 | MS.gene26660:intron | 45.0% | |
| TTACCGTCATAAGCAAGACG+AGG | + | chr4.1:21938888-21938907 | None:intergenic | 45.0% | |
| ! | AATGCAATGGCACTGAGTGT+TGG | - | chr4.1:21937918-21937937 | MS.gene26660:intron | 45.0% |
| ! | AGAAATTGGGGTTGACGGAT+CGG | - | chr4.1:21937698-21937717 | MS.gene26660:intron | 45.0% |
| ! | AGATGTGGTTCTGTCATAGG+AGG | - | chr4.1:21937728-21937747 | MS.gene26660:intron | 45.0% |
| ! | GAAGTGTTAGTAGCCGAACA+TGG | + | chr4.1:21938818-21938837 | None:intergenic | 45.0% |
| ! | GATGCATTTGGGGCACTTAT+AGG | - | chr4.1:21938065-21938084 | MS.gene26660:intron | 45.0% |
| ! | TGCAGATGTGGTTCTGTCAT+AGG | - | chr4.1:21937725-21937744 | MS.gene26660:intron | 45.0% |
| AAAAGGGGTGGTGCAGATGA+TGG | - | chr4.1:21937417-21937436 | MS.gene26660:CDS | 50.0% | |
| AGAGTTCGATCCATTGCCAC+CGG | - | chr4.1:21938043-21938062 | MS.gene26660:intron | 50.0% | |
| AGGGAGAGAGTGATCGGAAA+AGG | - | chr4.1:21937400-21937419 | MS.gene26660:CDS | 50.0% | |
| ATTGCCACCGGATGCATTTG+GGG | - | chr4.1:21938055-21938074 | MS.gene26660:intron | 50.0% | |
| ATTGGTGCATCCTCCCTCAA+TGG | + | chr4.1:21938014-21938033 | None:intergenic | 50.0% | |
| CATTGCCACCGGATGCATTT+GGG | - | chr4.1:21938054-21938073 | MS.gene26660:intron | 50.0% | |
| CGACCTCGTCTTGCTTATGA+CGG | - | chr4.1:21938882-21938901 | MS.gene26660:CDS | 50.0% | |
| GAAGGTGAAGGTAGTTCGGA+GGG | - | chr4.1:21937381-21937400 | MS.gene26660:CDS | 50.0% | |
| GCTTGTGTGGAGGATCAGTT+AGG | - | chr4.1:21937984-21938003 | MS.gene26660:intron | 50.0% | |
| GGAGAGAGTGATCGGAAAAG+GGG | - | chr4.1:21937402-21937421 | MS.gene26660:CDS | 50.0% | |
| GGGAGAGAGTGATCGGAAAA+GGG | - | chr4.1:21937401-21937420 | MS.gene26660:CDS | 50.0% | |
| GTTAGGTGAACCATTGAGGG+AGG | - | chr4.1:21938001-21938020 | MS.gene26660:intron | 50.0% | |
| TGAGTCCCCTCAGGATGAAA+TGG | - | chr4.1:21937947-21937966 | MS.gene26660:intron | 50.0% | |
| ! | TCACAGGATGGGTTTGAGCA+TGG | - | chr4.1:21937840-21937859 | MS.gene26660:intron | 50.0% |
| AAGCAAGACGAGGTCGCTTC+TGG | + | chr4.1:21938878-21938897 | None:intergenic | 55.0% | |
| AGGCTTACTCTGCCCCTCAT+TGG | + | chr4.1:21937457-21937476 | None:intergenic | 55.0% | |
| ATTACCCTTCAGAGCCGGTG+AGG | - | chr4.1:21937662-21937681 | MS.gene26660:intron | 55.0% | |
| ATTCCCCGGTGGATGATCAC+AGG | - | chr4.1:21937824-21937843 | MS.gene26660:intron | 55.0% | |
| CATCCTGTGATCATCCACCG+GGG | + | chr4.1:21937830-21937849 | None:intergenic | 55.0% | |
| CCAAATGCATCCGGTGGCAA+TGG | + | chr4.1:21938056-21938075 | None:intergenic | 55.0% | |
| CCATCCTGTGATCATCCACC+GGG | + | chr4.1:21937831-21937850 | None:intergenic | 55.0% | |
| CCATTGCCACCGGATGCATT+TGG | - | chr4.1:21938053-21938072 | MS.gene26660:intron | 55.0% | |
| CCCATCCTGTGATCATCCAC+CGG | + | chr4.1:21937832-21937851 | None:intergenic | 55.0% | |
| CCGGTGGATGATCACAGGAT+GGG | - | chr4.1:21937829-21937848 | MS.gene26660:intron | 55.0% | |
| GAAGGAGTCTGCTCCCAAGA+AGG | - | chr4.1:21937762-21937781 | MS.gene26660:intron | 55.0% | |
| GAGAGTGATCGGAAAAGGGG+TGG | - | chr4.1:21937405-21937424 | MS.gene26660:CDS | 55.0% | |
| GGAAGGTGAAGGTAGTTCGG+AGG | - | chr4.1:21937380-21937399 | MS.gene26660:CDS | 55.0% | |
| GTTCGGAGGGAGAGAGTGAT+CGG | - | chr4.1:21937394-21937413 | MS.gene26660:CDS | 55.0% | |
| TATGACTCAGGGTCGGGTTC+AGG | - | chr4.1:21937870-21937889 | MS.gene26660:intron | 55.0% | |
| TGATCATCCACCGGGGAATC+CGG | + | chr4.1:21937823-21937842 | None:intergenic | 55.0% | |
| ! | CTCAGTGCCATTGCATTCCG+CGG | + | chr4.1:21937915-21937934 | None:intergenic | 55.0% |
| !! | CTATCCTCACCGGCTCTGAA+GGG | + | chr4.1:21937669-21937688 | None:intergenic | 55.0% |
| !! | TCTATCCTCACCGGCTCTGA+AGG | + | chr4.1:21937670-21937689 | None:intergenic | 55.0% |
| AGTGCCCCAAATGCATCCGG+TGG | + | chr4.1:21938062-21938081 | None:intergenic | 60.0% | |
| CCCGGTGGATGATCACAGGA+TGG | - | chr4.1:21937828-21937847 | MS.gene26660:intron | 60.0% | |
| CGGATCGGCAGTTGCAGATG+TGG | - | chr4.1:21937713-21937732 | MS.gene26660:intron | 60.0% | |
| GCCTGTGGTTCAGCCTTTGC+CGG | - | chr4.1:21937801-21937820 | MS.gene26660:intron | 60.0% | |
| GGAGTCTGCTCCCAAGAAGG+TGG | - | chr4.1:21937765-21937784 | MS.gene26660:intron | 60.0% | |
| GTTGGAGCCGCGGAATGCAA+TGG | - | chr4.1:21937905-21937924 | MS.gene26660:intron | 60.0% | |
| TCAGCCTTTGCCGGATTCCC+CGG | - | chr4.1:21937810-21937829 | MS.gene26660:intron | 60.0% | |
| TCCGGCAAAGGCTGAACCAC+AGG | + | chr4.1:21937805-21937824 | None:intergenic | 60.0% | |
| TGAACCACAGGCTTCCGTGG+CGG | + | chr4.1:21937793-21937812 | None:intergenic | 60.0% | |
| ! | GTCGGGTTCAGGTTCGAGTC+CGG | - | chr4.1:21937881-21937900 | MS.gene26660:intron | 60.0% |
| ! | TCGGGTTCAGGTTCGAGTCC+GGG | - | chr4.1:21937882-21937901 | MS.gene26660:intron | 60.0% |
| ! | TTCAGGTTCGAGTCCGGGGT+TGG | - | chr4.1:21937887-21937906 | MS.gene26660:intron | 60.0% |
| CGTGGCGGCACCACCTTCTT+GGG | + | chr4.1:21937778-21937797 | None:intergenic | 65.0% | |
| GGCTGAACCACAGGCTTCCG+TGG | + | chr4.1:21937796-21937815 | None:intergenic | 65.0% | |
| TCCACCGGGGAATCCGGCAA+AGG | + | chr4.1:21937817-21937836 | None:intergenic | 65.0% | |
| ! | CGGGTTCAGGTTCGAGTCCG+GGG | - | chr4.1:21937883-21937902 | MS.gene26660:intron | 65.0% |
| !! | CCAAGAAGGTGGTGCCGCCA+CGG | - | chr4.1:21937776-21937795 | MS.gene26660:intron | 65.0% |
| CCGTGGCGGCACCACCTTCT+TGG | + | chr4.1:21937779-21937798 | None:intergenic | 70.0% | |
| GCATTCCGCGGCTCCAACCC+CGG | + | chr4.1:21937903-21937922 | None:intergenic | 70.0% | |
| GCCTTTGCCGGATTCCCCGG+TGG | - | chr4.1:21937813-21937832 | MS.gene26660:intron | 70.0% | |
| CGAGTCCGGGGTTGGAGCCG+CGG | - | chr4.1:21937895-21937914 | MS.gene26660:intron | 75.0% | |
| ! | GGTGCCGCCACGGAAGCCTG+TGG | - | chr4.1:21937786-21937805 | MS.gene26660:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 21937378 | 21938941 | 21937378 | ID=MS.gene26660 |
| chr4.1 | mRNA | 21937378 | 21938941 | 21937378 | ID=MS.gene26660.t1;Parent=MS.gene26660 |
| chr4.1 | exon | 21938788 | 21938941 | 21938788 | ID=MS.gene26660.t1.exon1;Parent=MS.gene26660.t1 |
| chr4.1 | CDS | 21938788 | 21938941 | 21938788 | ID=cds.MS.gene26660.t1;Parent=MS.gene26660.t1 |
| chr4.1 | exon | 21938458 | 21938663 | 21938458 | ID=MS.gene26660.t1.exon2;Parent=MS.gene26660.t1 |
| chr4.1 | CDS | 21938458 | 21938663 | 21938458 | ID=cds.MS.gene26660.t1;Parent=MS.gene26660.t1 |
| chr4.1 | exon | 21938233 | 21938368 | 21938233 | ID=MS.gene26660.t1.exon3;Parent=MS.gene26660.t1 |
| chr4.1 | CDS | 21938233 | 21938368 | 21938233 | ID=cds.MS.gene26660.t1;Parent=MS.gene26660.t1 |
| chr4.1 | exon | 21937378 | 21937457 | 21937378 | ID=MS.gene26660.t1.exon4;Parent=MS.gene26660.t1 |
| chr4.1 | CDS | 21937378 | 21937457 | 21937378 | ID=cds.MS.gene26660.t1;Parent=MS.gene26660.t1 |
| Gene Sequence |
| Protein sequence |
