AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26836

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26836.t1 MTR_4g035820 51.724 406 184 5 21 422 35 432 3.10e-131 399
MS.gene26836.t1 MTR_5g017720 79.641 167 9 1 424 590 18 159 6.83e-87 268
MS.gene26836.t1 MTR_6g014355 73.810 126 33 0 126 251 5 130 8.65e-56 189
MS.gene26836.t1 MTR_6g014355 69.565 138 36 2 337 474 114 245 1.38e-54 186
MS.gene26836.t1 MTR_3g450850 37.238 239 140 3 65 295 50 286 1.18e-43 159
MS.gene26836.t1 MTR_1g061650 98.214 56 1 0 1 56 1 56 2.80e-32 119
MS.gene26836.t1 MTR_6g051425 26.912 353 209 12 46 375 1 327 1.10e-30 123
MS.gene26836.t1 MTR_8g447350 49.558 113 35 3 376 488 1 91 1.21e-27 110
MS.gene26836.t1 MTR_1g070355 29.967 307 193 10 20 316 27 321 6.31e-26 112
MS.gene26836.t1 MTR_6g025700 67.164 67 22 0 11 77 11 77 6.58e-26 102
MS.gene26836.t1 MTR_2g035140 36.932 176 86 5 406 572 104 263 1.16e-24 104
MS.gene26836.t1 MTR_2g035140 43.103 116 51 3 192 307 13 113 4.20e-18 85.1
MS.gene26836.t1 MTR_3g012160 43.011 93 53 0 204 296 1 93 3.06e-19 83.2
MS.gene26836.t1 MTR_5g076070 25.517 290 195 9 19 295 1 282 1.37e-18 86.7
MS.gene26836.t1 MTR_2g098880 33.333 141 86 3 51 188 50 185 1.70e-16 80.1
MS.gene26836.t1 MTR_2g098880 33.333 141 86 3 51 188 62 197 2.03e-16 80.1
MS.gene26836.t1 MTR_0558s0020 23.507 268 173 7 59 300 28 289 8.19e-15 75.9
MS.gene26836.t1 MTR_2g098920 34.426 122 65 5 53 169 71 182 3.98e-14 73.2
MS.gene26836.t1 MTR_7g446520 29.958 237 134 8 68 298 94 304 6.59e-14 73.6
MS.gene26836.t1 MTR_3g006370 31.544 149 87 5 61 206 49 185 4.31e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26836.t1 AT1G10240 37.631 287 166 5 33 310 13 295 4.38e-55 198
MS.gene26836.t1 AT1G10240 36.318 201 118 3 294 489 409 604 9.27e-35 140
MS.gene26836.t1 AT1G10240 37.631 287 166 5 33 310 13 295 4.38e-55 198
MS.gene26836.t1 AT1G10240 36.318 201 118 3 294 489 409 604 9.27e-35 140
MS.gene26836.t1 AT5G28530 35.968 253 149 3 57 298 50 300 2.13e-45 171
MS.gene26836.t1 AT5G28530 29.439 214 141 4 281 487 406 616 4.46e-25 110
MS.gene26836.t1 AT5G28530 35.968 253 149 3 57 298 50 300 2.23e-45 171
MS.gene26836.t1 AT5G28530 29.907 214 136 4 281 487 406 612 4.57e-25 110
MS.gene26836.t1 AT5G28530 35.968 253 149 3 57 298 50 300 2.23e-45 171
MS.gene26836.t1 AT5G28530 29.907 214 136 4 281 487 406 612 4.57e-25 110
MS.gene26836.t1 AT5G28530 37.681 207 119 3 57 255 50 254 5.59e-38 149
MS.gene26836.t1 AT5G28530 29.907 214 136 4 281 487 343 549 2.68e-25 110
MS.gene26836.t1 AT5G28530 37.681 207 119 3 57 255 50 254 5.68e-38 149
MS.gene26836.t1 AT5G28530 29.439 214 141 4 281 487 343 553 2.85e-25 110
MS.gene26836.t1 AT4G38180 31.250 304 182 10 6 300 24 309 1.31e-30 128
MS.gene26836.t1 AT4G38180 27.074 229 157 2 293 516 430 653 3.56e-23 105
MS.gene26836.t1 AT4G38170 32.075 212 137 4 298 503 200 410 2.61e-27 116
MS.gene26836.t1 AT1G76320 28.866 194 132 3 298 487 348 539 2.05e-21 99.4
MS.gene26836.t1 AT1G76320 30.833 240 133 8 68 297 3 219 3.45e-18 89.0
MS.gene26836.t1 AT1G76320 28.866 194 132 3 298 487 348 539 2.05e-21 99.4
MS.gene26836.t1 AT1G76320 30.833 240 133 8 68 297 3 219 3.45e-18 89.0
MS.gene26836.t1 AT1G76320 28.866 194 132 3 298 487 348 539 2.17e-21 99.4
MS.gene26836.t1 AT1G76320 30.833 240 133 8 68 297 3 219 3.26e-18 89.4
MS.gene26836.t1 AT1G76320 28.866 194 132 3 298 487 348 539 2.50e-21 99.0
MS.gene26836.t1 AT1G76320 30.833 240 133 8 68 297 3 219 4.93e-18 88.6
MS.gene26836.t1 AT4G15090 28.788 198 135 3 298 490 411 607 6.47e-20 94.7
MS.gene26836.t1 AT4G15090 28.980 245 163 6 60 300 49 286 7.13e-18 88.2
MS.gene26836.t1 AT4G15090 28.788 198 135 3 298 490 411 607 6.47e-20 94.7
MS.gene26836.t1 AT4G15090 28.980 245 163 6 60 300 49 286 7.13e-18 88.2
MS.gene26836.t1 AT4G15090 28.788 198 135 3 298 490 411 607 6.47e-20 94.7
MS.gene26836.t1 AT4G15090 28.980 245 163 6 60 300 49 286 7.13e-18 88.2
MS.gene26836.t1 AT4G15090 28.788 198 135 3 298 490 411 607 6.47e-20 94.7
MS.gene26836.t1 AT4G15090 28.980 245 163 6 60 300 49 286 7.13e-18 88.2
MS.gene26836.t1 AT4G15090 28.788 198 135 3 298 490 411 607 6.47e-20 94.7
MS.gene26836.t1 AT4G15090 28.980 245 163 6 60 300 49 286 7.13e-18 88.2
MS.gene26836.t1 AT3G22170 27.723 202 140 3 298 494 420 620 9.21e-20 94.4
MS.gene26836.t1 AT3G22170 25.781 256 146 7 60 300 68 294 1.03e-12 71.6
MS.gene26836.t1 AT3G22170 27.723 202 140 3 298 494 420 620 9.21e-20 94.4
MS.gene26836.t1 AT3G22170 25.781 256 146 7 60 300 68 294 1.03e-12 71.6
MS.gene26836.t1 AT3G06250 29.741 232 144 7 283 500 489 715 4.72e-19 92.0
MS.gene26836.t1 AT3G06250 29.741 232 144 7 283 500 489 715 4.72e-19 92.0
MS.gene26836.t1 AT3G06250 29.741 232 144 7 283 500 489 715 4.72e-19 92.0
MS.gene26836.t1 AT4G19990 26.887 212 145 4 293 496 297 506 7.35e-19 91.3
MS.gene26836.t1 AT4G19990 26.887 212 145 4 293 496 354 563 7.73e-19 91.3
MS.gene26836.t1 AT4G19990 26.887 212 145 4 293 496 354 563 7.73e-19 91.3
MS.gene26836.t1 AT4G19990 26.887 212 145 4 293 496 368 577 7.99e-19 91.3
MS.gene26836.t1 AT4G19990 26.887 212 145 4 293 496 354 563 8.65e-19 90.9
MS.gene26836.t1 AT4G19990 26.887 212 145 4 293 496 354 563 9.95e-19 90.9
MS.gene26836.t1 AT4G19990 26.887 212 145 4 293 496 354 563 9.95e-19 90.9
MS.gene26836.t1 AT2G27110 28.241 216 145 5 298 507 237 448 3.05e-18 89.4
MS.gene26836.t1 AT2G27110 28.241 216 145 5 298 507 382 593 3.13e-18 89.4
MS.gene26836.t1 AT2G27110 22.846 267 172 6 34 300 24 256 3.71e-12 70.1
MS.gene26836.t1 AT2G27110 28.241 216 145 5 298 507 382 593 3.13e-18 89.4
MS.gene26836.t1 AT2G27110 22.846 267 172 6 34 300 24 256 3.71e-12 70.1
MS.gene26836.t1 AT5G18960 27.434 226 144 7 290 500 519 739 1.64e-17 87.0
MS.gene26836.t1 AT5G18960 27.434 226 144 7 290 500 519 739 1.64e-17 87.0
MS.gene26836.t1 AT1G52520 26.818 220 143 5 289 490 417 636 1.45e-15 80.9
MS.gene26836.t1 AT3G59470 28.495 186 94 6 13 169 9 184 1.41e-13 71.6
MS.gene26836.t1 AT3G59470 32.258 155 86 6 24 169 28 172 3.19e-13 70.5
MS.gene26836.t1 AT3G59470 32.258 155 86 6 24 169 28 172 3.19e-13 70.5
MS.gene26836.t1 AT2G32250 23.469 196 146 2 298 489 355 550 2.19e-12 70.5
MS.gene26836.t1 AT2G32250 23.469 196 146 2 298 489 355 550 2.43e-12 70.5
MS.gene26836.t1 AT2G32250 23.469 196 146 2 298 489 355 550 2.43e-12 70.5
MS.gene26836.t1 AT2G32250 23.469 196 146 2 298 489 355 550 2.43e-12 70.5
MS.gene26836.t1 AT2G32250 23.469 196 146 2 298 489 355 550 2.44e-12 70.5
MS.gene26836.t1 AT2G32250 23.469 196 146 2 298 489 355 550 2.44e-12 70.5
MS.gene26836.t1 AT2G32250 23.469 196 146 2 298 489 314 509 2.85e-12 70.1
MS.gene26836.t1 AT2G32250 23.469 196 146 2 298 489 314 509 3.03e-12 70.1

Find 95 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCACACGGTTCATTATT+TGG 0.112193 8.1:-8119354 None:intergenic
TATCTTCGTGGACATTTCTT+TGG 0.188030 8.1:+8120365 MS.gene26836:CDS
GGAAGATCAGAGAGTATAAA+TGG 0.208991 8.1:+8120404 MS.gene26836:CDS
TCAATAACTTGCCATTCTTT+TGG 0.220230 8.1:-8119714 None:intergenic
CACAAAAGCATAAAGTCTTA+TGG 0.233735 8.1:+8121045 MS.gene26836:CDS
CTATTTCGTTGTTCTTTAGA+TGG 0.256140 8.1:-8119624 None:intergenic
CTTTGAACTTGCTCCTCTAT+AGG 0.259030 8.1:-8120903 None:intergenic
AGAAAACATTGTCCAATAAA+AGG 0.261110 8.1:-8119447 None:intergenic
TAAGATTCACCAAGGTAAAT+TGG 0.262024 8.1:+8119953 MS.gene26836:CDS
TAAGACTTTAAATATAAAAT+AGG 0.262718 8.1:-8121515 None:intergenic
TTCTCCACATTCTCAATATA+TGG 0.265541 8.1:-8121269 None:intergenic
TTTGAACTTGCTCCTCTATA+GGG 0.267606 8.1:-8120902 None:intergenic
CACCATGTTGGATACATATA+GGG 0.299499 8.1:+8120857 MS.gene26836:CDS
TTTGAGTTGTACCAAGAATA+TGG 0.300348 8.1:+8120104 MS.gene26836:CDS
TATCAACAGTGAATGCAAAT+TGG 0.310367 8.1:-8120037 None:intergenic
ATTATAAGAATTCACCTTGT+AGG 0.317528 8.1:-8120150 None:intergenic
AAAGACTAGAGAATATATTT+TGG 0.320756 8.1:+8120066 MS.gene26836:CDS
GATTGAGAACCCACTCCTTT+TGG 0.334536 8.1:-8119508 None:intergenic
GAAGCAAACAAACACATAAT+AGG 0.338772 8.1:+8120308 MS.gene26836:CDS
ATCTTCGTGGACATTTCTTT+GGG 0.345309 8.1:+8120366 MS.gene26836:CDS
CAACGACCTCTCCATATTCT+TGG 0.352260 8.1:-8120115 None:intergenic
TGAATATCTTTCCGAAGAAA+TGG 0.356103 8.1:-8119918 None:intergenic
ACACCATGTTGGATACATAT+AGG 0.358167 8.1:+8120856 MS.gene26836:CDS
GCAAGGAAGCGCACTTGATC+TGG 0.359458 8.1:-8119771 None:intergenic
ACAAAAGCATAAAGTCTTAT+GGG 0.378373 8.1:+8121046 MS.gene26836:CDS
CTAAGTGAGGAAGAAGCTTT+CGG 0.384552 8.1:+8119468 MS.gene26836:CDS
ATCTTGCCATTGAGGACATT+GGG 0.386566 8.1:+8120817 MS.gene26836:CDS
CAAGCAAATAATGTGTGTTA+TGG 0.397147 8.1:+8119863 MS.gene26836:CDS
ATGGTGATCTTCCATTTCTT+CGG 0.414681 8.1:+8119907 MS.gene26836:CDS
TTTAGTGAAGTAGGACATAA+AGG 0.415021 8.1:+8121239 MS.gene26836:CDS
GAGAATTATGCCAAAAGGAG+TGG 0.432756 8.1:+8119498 MS.gene26836:CDS
TTTGGGAGTATGACAACAAC+AGG 0.434388 8.1:+8120383 MS.gene26836:CDS
TTGCCCTCTCAAACTCCTCC+TGG 0.438199 8.1:-8120956 None:intergenic
AAAGGAGTGGGTTCTCAATC+CGG 0.438711 8.1:+8119511 MS.gene26836:CDS
TTATGGGATGGTGATGTTGT+TGG 0.458032 8.1:+8121062 MS.gene26836:CDS
AACATGACATTTACTTCGAC+TGG 0.459520 8.1:-8121218 None:intergenic
AACGAAATAGACAATCTTCA+AGG 0.467235 8.1:+8119637 MS.gene26836:CDS
GGAACATAACCTTCTTTGTC+CGG 0.471805 8.1:-8121437 None:intergenic
AATGTCATGTTTAGTGAAGT+AGG 0.472229 8.1:+8121230 MS.gene26836:CDS
TGGGTACCGGCTTATCTTCG+TGG 0.475874 8.1:+8120353 MS.gene26836:CDS
TCAAGGTGTGGATGCAAAGC+GGG 0.486956 8.1:+8119654 MS.gene26836:CDS
TTTATGAGAATTATGCCAAA+AGG 0.493635 8.1:+8119493 MS.gene26836:CDS
TTAGGTTGATCTTGCCATTG+AGG 0.494408 8.1:+8120809 MS.gene26836:intron
GAGGTAGTAAATCATGATTA+TGG 0.500482 8.1:-8119749 None:intergenic
GCATGAACTTAAGCAACATT+GGG 0.501171 8.1:+8120334 MS.gene26836:CDS
CCTAAAACAAAACGATCAAA+AGG 0.501176 8.1:+8121341 MS.gene26836:CDS
TGCATGAACTTAAGCAACAT+TGG 0.502369 8.1:+8120333 MS.gene26836:CDS
CGTAATGGCAGATACCTTGT+TGG 0.505068 8.1:-8121170 None:intergenic
TGATTTGAGCAACGACGAGC+AGG 0.506619 8.1:+8119395 MS.gene26836:CDS
TCACAATGTTACAACTTGTC+CGG 0.507013 8.1:+8121418 MS.gene26836:CDS
TCGATCATTATCCCCTATAG+AGG 0.513231 8.1:+8120890 MS.gene26836:CDS
GATCTTGCCATTGAGGACAT+TGG 0.526255 8.1:+8120816 MS.gene26836:CDS
CCTCCGCGTTCAATAACAAA+AGG 0.532998 8.1:+8121314 MS.gene26836:CDS
TTGTTGCCCAATGTCCTCAA+TGG 0.536367 8.1:-8120823 None:intergenic
ACAACTTGTCCGGACAAAGA+AGG 0.546455 8.1:+8121428 MS.gene26836:CDS
TGCATTTGATACTACCTACA+AGG 0.547093 8.1:+8120136 MS.gene26836:CDS
TCATCACGACACCAACGTAA+TGG 0.552128 8.1:-8121185 None:intergenic
GAAGATCAGAGAGTATAAAT+GGG 0.554653 8.1:+8120405 MS.gene26836:CDS
ATTTACTGTGAAATATTACA+AGG 0.556334 8.1:+8121013 MS.gene26836:CDS
CATCTTCCTCAGAAATGTTG+TGG 0.561811 8.1:-8119800 None:intergenic
TTGAACTTGCTCCTCTATAG+GGG 0.562876 8.1:-8120901 None:intergenic
TAGTAAATCATGATTATGGT+TGG 0.565674 8.1:-8119745 None:intergenic
AAAATGGGATGATACATAGG+AGG 0.572376 8.1:+8119553 MS.gene26836:CDS
AAATGTTGTGGTAAGATGCA+AGG 0.573935 8.1:-8119788 None:intergenic
CATCACCATCCAATTTACCT+TGG 0.575070 8.1:-8119962 None:intergenic
GGGTCCATATATTGAGAATG+TGG 0.577307 8.1:+8121265 MS.gene26836:CDS
CTCAATCAATTGTTCTCATG+TGG 0.580264 8.1:+8119067 MS.gene26836:CDS
AAATGTCCACGAAGATAAGC+CGG 0.581287 8.1:-8120359 None:intergenic
AAATGGGATGATACATAGGA+GGG 0.584474 8.1:+8119554 MS.gene26836:CDS
ACTTAAGCAACATTGGGTAC+CGG 0.589921 8.1:+8120340 MS.gene26836:CDS
GAAGTAGGACATAAAGGCAA+GGG 0.591654 8.1:+8121245 MS.gene26836:CDS
TTCAAGGTGTGGATGCAAAG+CGG 0.592179 8.1:+8119653 MS.gene26836:CDS
ATTCACCAAGGTAAATTGGA+TGG 0.593411 8.1:+8119957 MS.gene26836:CDS
AGTTCCAGGAGGAGTTTGAG+AGG 0.593892 8.1:+8120952 MS.gene26836:CDS
AGAATTATGCCAAAAGGAGT+GGG 0.597719 8.1:+8119499 MS.gene26836:CDS
ACAACTACATCACACCATGT+TGG 0.599668 8.1:+8120845 MS.gene26836:CDS
AAGCATAAAGTCTTATGGGA+TGG 0.601527 8.1:+8121050 MS.gene26836:CDS
GTTCCAGGAGGAGTTTGAGA+GGG 0.605391 8.1:+8120953 MS.gene26836:CDS
TGAAGTAGGACATAAAGGCA+AGG 0.605684 8.1:+8121244 MS.gene26836:CDS
AATAGACAATCTTCAAGGTG+TGG 0.612896 8.1:+8119642 MS.gene26836:CDS
AAGGTGGAATCGAATTGTCA+AGG 0.613048 8.1:+8121360 MS.gene26836:CDS
ACCATGTTGGATACATATAG+GGG 0.617078 8.1:+8120858 MS.gene26836:CDS
ATCTTACCACAACATTTCTG+AGG 0.619979 8.1:+8119794 MS.gene26836:CDS
TACAACTCAAAGCAATGAGG+TGG 0.628223 8.1:-8120092 None:intergenic
AGGAAGCGCACTTGATCTGG+AGG 0.631105 8.1:-8119768 None:intergenic
AAAACAAAACGATCAAAAGG+TGG 0.634811 8.1:+8121344 MS.gene26836:CDS
TTCTTCAATAAGATTCACCA+AGG 0.638648 8.1:+8119945 MS.gene26836:CDS
AGTGGGTTCTCAATCCGGAA+AGG 0.654585 8.1:+8119516 MS.gene26836:CDS
ATTGCTTTCAAATTCCAACA+AGG 0.667427 8.1:+8121156 MS.gene26836:CDS
TCCCCTATATGTATCCAACA+TGG 0.671193 8.1:-8120859 None:intergenic
CAAGGTATCTGCCATTACGT+TGG 0.682443 8.1:+8121174 MS.gene26836:CDS
TGCGTTTAAGAAGTTCCAGG+AGG 0.692916 8.1:+8120941 MS.gene26836:CDS
TGGTACAACTCAAAGCAATG+AGG 0.700317 8.1:-8120095 None:intergenic
GTTGTACCAAGAATATGGAG+AGG 0.716205 8.1:+8120109 MS.gene26836:CDS
AGTTTAAATAAACTTGAACG+AGG 0.727395 8.1:-8120449 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGACTTTAAATATAAAAT+AGG - chr8.1:8121518-8121537 None:intergenic 10.0%
!! AATGATACTTTAATAACTAA+TGG + chr8.1:8120760-8120779 MS.gene26836:intron 15.0%
!! TAATATGAATTTATTTGTGT+AGG + chr8.1:8119295-8119314 MS.gene26836:intron 15.0%
!!! AATTCAACAATAATATTTTG+TGG + chr8.1:8119229-8119248 MS.gene26836:intron 15.0%
!! AATTCGTATATAAGGAATTA+GGG - chr8.1:8119213-8119232 None:intergenic 20.0%
!! ATTTACTGTGAAATATTACA+AGG + chr8.1:8121013-8121032 MS.gene26836:CDS 20.0%
!! TATTGTTGAATTCGTATATA+AGG - chr8.1:8119221-8119240 None:intergenic 20.0%
!! TTGAGAACAATATAAGAAAA+AGG - chr8.1:8119141-8119160 None:intergenic 20.0%
!!! AAAGACTAGAGAATATATTT+TGG + chr8.1:8120066-8120085 MS.gene26836:CDS 20.0%
!!! AATTCTTATAATATGCCTTT+TGG + chr8.1:8120161-8120180 MS.gene26836:intron 20.0%
!!! AATTGTTTTGAACCTTTTAT+TGG + chr8.1:8119435-8119454 MS.gene26836:CDS 20.0%
!!! GTCGATTTCTTAAAAAAAAT+GGG + chr8.1:8119538-8119557 MS.gene26836:CDS 20.0%
! AAAAAAATGGGATGATACAT+AGG + chr8.1:8119550-8119569 MS.gene26836:CDS 25.0%
! AGAAAACATTGTCCAATAAA+AGG - chr8.1:8119450-8119469 None:intergenic 25.0%
! AGTTTAAATAAACTTGAACG+AGG - chr8.1:8120452-8120471 None:intergenic 25.0%
! ATTACTACTACATAGCTAAA+AGG - chr8.1:8119279-8119298 None:intergenic 25.0%
! ATTATAAGAATTCACCTTGT+AGG - chr8.1:8120153-8120172 None:intergenic 25.0%
! ATTCGTATATAAGGAATTAG+GGG - chr8.1:8119212-8119231 None:intergenic 25.0%
! CAAAACATAGTATAAACACA+GGG - chr8.1:8120562-8120581 None:intergenic 25.0%
! CTTGAGAAAAATGTTAAGTA+TGG + chr8.1:8119888-8119907 MS.gene26836:CDS 25.0%
! GAATTCGTATATAAGGAATT+AGG - chr8.1:8119214-8119233 None:intergenic 25.0%
! TAGTAAATCATGATTATGGT+TGG - chr8.1:8119748-8119767 None:intergenic 25.0%
! TGAATTTATTTGTGTAGGTT+AGG + chr8.1:8119300-8119319 MS.gene26836:intron 25.0%
! TTTATGAGAATTATGCCAAA+AGG + chr8.1:8119493-8119512 MS.gene26836:CDS 25.0%
!! ACAAAAGCATAAAGTCTTAT+GGG + chr8.1:8121046-8121065 MS.gene26836:CDS 25.0%
!! GGTCGATTTCTTAAAAAAAA+TGG + chr8.1:8119537-8119556 MS.gene26836:CDS 25.0%
!! TCATTTTCTGAATTATCACA+CGG - chr8.1:8119369-8119388 None:intergenic 25.0%
!! TTGAGATTTTTCCAAAAGAA+TGG + chr8.1:8119703-8119722 MS.gene26836:CDS 25.0%
!!! GGATCATGATATTTTTTTTC+TGG - chr8.1:8119606-8119625 None:intergenic 25.0%
!!! TTCTTTTGGAAAAATCTCAA+AGG - chr8.1:8119703-8119722 None:intergenic 25.0%
!!! TTGTAAGCATTTTGAGTTTT+GGG + chr8.1:8121091-8121110 MS.gene26836:CDS 25.0%
AAAACAAAACGATCAAAAGG+TGG + chr8.1:8121344-8121363 MS.gene26836:CDS 30.0%
AACGAAATAGACAATCTTCA+AGG + chr8.1:8119637-8119656 MS.gene26836:CDS 30.0%
AATGTCATGTTTAGTGAAGT+AGG + chr8.1:8121230-8121249 MS.gene26836:CDS 30.0%
ATTCCAACAAAAATGCCAAA+AGG - chr8.1:8120179-8120198 None:intergenic 30.0%
ATTGCTTTCAAATTCCAACA+AGG + chr8.1:8121156-8121175 MS.gene26836:CDS 30.0%
CAAGCAAATAATGTGTGTTA+TGG + chr8.1:8119863-8119882 MS.gene26836:CDS 30.0%
CCAAAACATAGTATAAACAC+AGG - chr8.1:8120563-8120582 None:intergenic 30.0%
CCTAAAACAAAACGATCAAA+AGG + chr8.1:8121341-8121360 MS.gene26836:CDS 30.0%
CTATTTCGTTGTTCTTTAGA+TGG - chr8.1:8119627-8119646 None:intergenic 30.0%
GAAGCAAACAAACACATAAT+AGG + chr8.1:8120308-8120327 MS.gene26836:CDS 30.0%
GAGGTAGTAAATCATGATTA+TGG - chr8.1:8119752-8119771 None:intergenic 30.0%
TAAGATTCACCAAGGTAAAT+TGG + chr8.1:8119953-8119972 MS.gene26836:CDS 30.0%
TATCAACAGTGAATGCAAAT+TGG - chr8.1:8120040-8120059 None:intergenic 30.0%
TGAATATCTTTCCGAAGAAA+TGG - chr8.1:8119921-8119940 None:intergenic 30.0%
TTATCACACGGTTCATTATT+TGG - chr8.1:8119357-8119376 None:intergenic 30.0%
TTCTCCACATTCTCAATATA+TGG - chr8.1:8121272-8121291 None:intergenic 30.0%
TTCTTCAATAAGATTCACCA+AGG + chr8.1:8119945-8119964 MS.gene26836:CDS 30.0%
TTTAGTGAAGTAGGACATAA+AGG + chr8.1:8121239-8121258 MS.gene26836:CDS 30.0%
! CACAAAAGCATAAAGTCTTA+TGG + chr8.1:8121045-8121064 MS.gene26836:CDS 30.0%
! CCTGTGTTTATACTATGTTT+TGG + chr8.1:8120560-8120579 MS.gene26836:intron 30.0%
! GAAGATCAGAGAGTATAAAT+GGG + chr8.1:8120405-8120424 MS.gene26836:CDS 30.0%
! TTCATTCTTCCTCTTTTTGA+TGG - chr8.1:8121471-8121490 None:intergenic 30.0%
!! GTGTTTATACTATGTTTTGG+AGG + chr8.1:8120563-8120582 MS.gene26836:intron 30.0%
!! TCAATAACTTGCCATTCTTT+TGG - chr8.1:8119717-8119736 None:intergenic 30.0%
!! TTTGAGTTGTACCAAGAATA+TGG + chr8.1:8120104-8120123 MS.gene26836:CDS 30.0%
!! TTTTAAGAAATCGACCTTTC+CGG - chr8.1:8119533-8119552 None:intergenic 30.0%
!!! CCTTTTGATCGTTTTGTTTT+AGG - chr8.1:8121344-8121363 None:intergenic 30.0%
!!! GTTGTAAGCATTTTGAGTTT+TGG + chr8.1:8121090-8121109 MS.gene26836:CDS 30.0%
!!! TATGTTTTGGAGGATAGTTT+TGG + chr8.1:8120573-8120592 MS.gene26836:intron 30.0%
!!! TGTAAGCATTTTGAGTTTTG+GGG + chr8.1:8121092-8121111 MS.gene26836:CDS 30.0%
AAAATGGGATGATACATAGG+AGG + chr8.1:8119553-8119572 MS.gene26836:CDS 35.0%
AAACTGCATCTACATTTCGA+TGG + chr8.1:8120249-8120268 MS.gene26836:intron 35.0%
AAATGGGATGATACATAGGA+GGG + chr8.1:8119554-8119573 MS.gene26836:CDS 35.0%
AAATGTTGTGGTAAGATGCA+AGG - chr8.1:8119791-8119810 None:intergenic 35.0%
AACATAGTATAAACACAGGG+AGG - chr8.1:8120559-8120578 None:intergenic 35.0%
AACATGACATTTACTTCGAC+TGG - chr8.1:8121221-8121240 None:intergenic 35.0%
AATAGACAATCTTCAAGGTG+TGG + chr8.1:8119642-8119661 MS.gene26836:CDS 35.0%
ACACCATGTTGGATACATAT+AGG + chr8.1:8120856-8120875 MS.gene26836:CDS 35.0%
ACCATGTTGGATACATATAG+GGG + chr8.1:8120858-8120877 MS.gene26836:CDS 35.0%
AGAATTATGCCAAAAGGAGT+GGG + chr8.1:8119499-8119518 MS.gene26836:CDS 35.0%
ATCTTACCACAACATTTCTG+AGG + chr8.1:8119794-8119813 MS.gene26836:CDS 35.0%
ATCTTCGTGGACATTTCTTT+GGG + chr8.1:8120366-8120385 MS.gene26836:CDS 35.0%
ATGGTGATCTTCCATTTCTT+CGG + chr8.1:8119907-8119926 MS.gene26836:CDS 35.0%
ATTCACCAAGGTAAATTGGA+TGG + chr8.1:8119957-8119976 MS.gene26836:CDS 35.0%
CACCATGTTGGATACATATA+GGG + chr8.1:8120857-8120876 MS.gene26836:CDS 35.0%
CCAAGGTGAAAACATTAACA+AGG - chr8.1:8120517-8120536 None:intergenic 35.0%
CTCAATCAATTGTTCTCATG+TGG + chr8.1:8119067-8119086 MS.gene26836:CDS 35.0%
GCATGAACTTAAGCAACATT+GGG + chr8.1:8120334-8120353 MS.gene26836:CDS 35.0%
GTTTGCTTCTAGATTGTACT+TGG - chr8.1:8120297-8120316 None:intergenic 35.0%
TATCTTCGTGGACATTTCTT+TGG + chr8.1:8120365-8120384 MS.gene26836:CDS 35.0%
TCACAATGTTACAACTTGTC+CGG + chr8.1:8121418-8121437 MS.gene26836:CDS 35.0%
TGCATGAACTTAAGCAACAT+TGG + chr8.1:8120333-8120352 MS.gene26836:CDS 35.0%
TGCATTTGATACTACCTACA+AGG + chr8.1:8120136-8120155 MS.gene26836:CDS 35.0%
TTTACTCTACTCAAACACCA+AGG - chr8.1:8120534-8120553 None:intergenic 35.0%
TTTGTTGGAATCGACAATCA+CGG + chr8.1:8120188-8120207 MS.gene26836:intron 35.0%
! AAGCATAAAGTCTTATGGGA+TGG + chr8.1:8121050-8121069 MS.gene26836:CDS 35.0%
! ACAATTTTGTAAGTGTGCCA+AGG + chr8.1:8119998-8120017 MS.gene26836:CDS 35.0%
! ATGCCTTTTGGCATTTTTGT+TGG + chr8.1:8120173-8120192 MS.gene26836:intron 35.0%
! CCTTGTTAATGTTTTCACCT+TGG + chr8.1:8120514-8120533 MS.gene26836:intron 35.0%
! GGAAGATCAGAGAGTATAAA+TGG + chr8.1:8120404-8120423 MS.gene26836:CDS 35.0%
! TATTTTGCTCTTCACAAGTG+TGG + chr8.1:8120662-8120681 MS.gene26836:intron 35.0%
! TGGACAATGTTTTCTAAGTG+AGG + chr8.1:8119455-8119474 MS.gene26836:CDS 35.0%
! TGTAGCTTTTGCAATAGAAG+TGG + chr8.1:8121395-8121414 MS.gene26836:CDS 35.0%
! TTTGAACTTGCTCCTCTATA+GGG - chr8.1:8120905-8120924 None:intergenic 35.0%
! TTTTGCGTTTAAGAAGTTCC+AGG + chr8.1:8120938-8120957 MS.gene26836:CDS 35.0%
!!! CTCTTTTTGATGGTTGATGA+CGG - chr8.1:8121461-8121480 None:intergenic 35.0%
!!! TTTTTTCTGGAAATCCCTCT+CGG - chr8.1:8119593-8119612 None:intergenic 35.0%
AAATGTCCACGAAGATAAGC+CGG - chr8.1:8120362-8120381 None:intergenic 40.0%
AAGGTGGAATCGAATTGTCA+AGG + chr8.1:8121360-8121379 MS.gene26836:CDS 40.0%
ACAACTACATCACACCATGT+TGG + chr8.1:8120845-8120864 MS.gene26836:CDS 40.0%
ACGTGTAGTATGCATCTGTT+AGG + chr8.1:8120607-8120626 MS.gene26836:intron 40.0%
ACTTAAGCAACATTGGGTAC+CGG + chr8.1:8120340-8120359 MS.gene26836:CDS 40.0%
AGTATGCATCTGTTAGGAGT+TGG + chr8.1:8120613-8120632 MS.gene26836:intron 40.0%
ATCTTGCCATTGAGGACATT+GGG + chr8.1:8120817-8120836 MS.gene26836:CDS 40.0%
CACGGAAGGACAATATTGTT+TGG + chr8.1:8120206-8120225 MS.gene26836:intron 40.0%
CATCACCATCCAATTTACCT+TGG - chr8.1:8119965-8119984 None:intergenic 40.0%
CATCTTCCTCAGAAATGTTG+TGG - chr8.1:8119803-8119822 None:intergenic 40.0%
CGTCATCAACCATCAAAAAG+AGG + chr8.1:8121459-8121478 MS.gene26836:CDS 40.0%
CTAAGTGAGGAAGAAGCTTT+CGG + chr8.1:8119468-8119487 MS.gene26836:CDS 40.0%
GAAGTAGGACATAAAGGCAA+GGG + chr8.1:8121245-8121264 MS.gene26836:CDS 40.0%
GAGAATTATGCCAAAAGGAG+TGG + chr8.1:8119498-8119517 MS.gene26836:CDS 40.0%
GGAACATAACCTTCTTTGTC+CGG - chr8.1:8121440-8121459 None:intergenic 40.0%
GGGTCCATATATTGAGAATG+TGG + chr8.1:8121265-8121284 MS.gene26836:CDS 40.0%
GTGTGGTTTATGCATCTGTT+AGG + chr8.1:8120679-8120698 MS.gene26836:intron 40.0%
GTTGTACCAAGAATATGGAG+AGG + chr8.1:8120109-8120128 MS.gene26836:CDS 40.0%
TACAACTCAAAGCAATGAGG+TGG - chr8.1:8120095-8120114 None:intergenic 40.0%
TCCCCTATATGTATCCAACA+TGG - chr8.1:8120862-8120881 None:intergenic 40.0%
TCGATCATTATCCCCTATAG+AGG + chr8.1:8120890-8120909 MS.gene26836:CDS 40.0%
TGAAGTAGGACATAAAGGCA+AGG + chr8.1:8121244-8121263 MS.gene26836:CDS 40.0%
TGGTACAACTCAAAGCAATG+AGG - chr8.1:8120098-8120117 None:intergenic 40.0%
! CTTTGAACTTGCTCCTCTAT+AGG - chr8.1:8120906-8120925 None:intergenic 40.0%
! GAAGCAAGAGTTTTCATCCT+TGG - chr8.1:8120018-8120037 None:intergenic 40.0%
! TTATGGGATGGTGATGTTGT+TGG + chr8.1:8121062-8121081 MS.gene26836:CDS 40.0%
! TTGAACTTGCTCCTCTATAG+GGG - chr8.1:8120904-8120923 None:intergenic 40.0%
! TTTGGGAGTATGACAACAAC+AGG + chr8.1:8120383-8120402 MS.gene26836:CDS 40.0%
!! TTAGGTTGATCTTGCCATTG+AGG + chr8.1:8120809-8120828 MS.gene26836:intron 40.0%
!!! CGACCTTTTGTTATTGAACG+CGG - chr8.1:8121320-8121339 None:intergenic 40.0%
!!! GATTTTTTCTGTCACCGAGA+GGG + chr8.1:8119576-8119595 MS.gene26836:CDS 40.0%
!!! GGAGGATAGTTTTGGACAAT+AGG + chr8.1:8120581-8120600 MS.gene26836:intron 40.0%
ACAACTTGTCCGGACAAAGA+AGG + chr8.1:8121428-8121447 MS.gene26836:CDS 45.0%
CAACGACCTCTCCATATTCT+TGG - chr8.1:8120118-8120137 None:intergenic 45.0%
CCTCCGCGTTCAATAACAAA+AGG + chr8.1:8121314-8121333 MS.gene26836:CDS 45.0%
CGTAATGGCAGATACCTTGT+TGG - chr8.1:8121173-8121192 None:intergenic 45.0%
GATCTTGCCATTGAGGACAT+TGG + chr8.1:8120816-8120835 MS.gene26836:CDS 45.0%
TCATCACGACACCAACGTAA+TGG - chr8.1:8121188-8121207 None:intergenic 45.0%
TGCGTTTAAGAAGTTCCAGG+AGG + chr8.1:8120941-8120960 MS.gene26836:CDS 45.0%
TTCAAGGTGTGGATGCAAAG+CGG + chr8.1:8119653-8119672 MS.gene26836:CDS 45.0%
TTGGAATCGACAATCACGGA+AGG + chr8.1:8120192-8120211 MS.gene26836:intron 45.0%
TTGTTGCCCAATGTCCTCAA+TGG - chr8.1:8120826-8120845 None:intergenic 45.0%
! AAAGGAGTGGGTTCTCAATC+CGG + chr8.1:8119511-8119530 MS.gene26836:CDS 45.0%
! CAAGGTATCTGCCATTACGT+TGG + chr8.1:8121174-8121193 MS.gene26836:CDS 45.0%
! GATTGAGAACCCACTCCTTT+TGG - chr8.1:8119511-8119530 None:intergenic 45.0%
!!! CCTTTTGTTATTGAACGCGG+AGG - chr8.1:8121317-8121336 None:intergenic 45.0%
!!! GGATTTTTTCTGTCACCGAG+AGG + chr8.1:8119575-8119594 MS.gene26836:CDS 45.0%
!!! ATTTTTTTATCTAATATTTT+AGG + chr8.1:8120791-8120810 MS.gene26836:intron 5.0%
AGTTCCAGGAGGAGTTTGAG+AGG + chr8.1:8120952-8120971 MS.gene26836:CDS 50.0%
GTTCCAGGAGGAGTTTGAGA+GGG + chr8.1:8120953-8120972 MS.gene26836:CDS 50.0%
TCAAGGTGTGGATGCAAAGC+GGG + chr8.1:8119654-8119673 MS.gene26836:CDS 50.0%
TGATTTGAGCAACGACGAGC+AGG + chr8.1:8119395-8119414 MS.gene26836:CDS 50.0%
! AGTGGGTTCTCAATCCGGAA+AGG + chr8.1:8119516-8119535 MS.gene26836:CDS 50.0%
TTGCCCTCTCAAACTCCTCC+TGG - chr8.1:8120959-8120978 None:intergenic 55.0%
! AGGAAGCGCACTTGATCTGG+AGG - chr8.1:8119771-8119790 None:intergenic 55.0%
! GCAAGGAAGCGCACTTGATC+TGG - chr8.1:8119774-8119793 None:intergenic 55.0%
!! TGGGTACCGGCTTATCTTCG+TGG + chr8.1:8120353-8120372 MS.gene26836:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 8119050 8121538 8119050 ID=MS.gene26836
chr8.1 mRNA 8119050 8121538 8119050 ID=MS.gene26836.t1;Parent=MS.gene26836
chr8.1 exon 8119050 8119102 8119050 ID=MS.gene26836.t1.exon1;Parent=MS.gene26836.t1
chr8.1 CDS 8119050 8119102 8119050 ID=cds.MS.gene26836.t1;Parent=MS.gene26836.t1
chr8.1 exon 8119317 8120157 8119317 ID=MS.gene26836.t1.exon2;Parent=MS.gene26836.t1
chr8.1 CDS 8119317 8120157 8119317 ID=cds.MS.gene26836.t1;Parent=MS.gene26836.t1
chr8.1 exon 8120299 8120481 8120299 ID=MS.gene26836.t1.exon3;Parent=MS.gene26836.t1
chr8.1 CDS 8120299 8120481 8120299 ID=cds.MS.gene26836.t1;Parent=MS.gene26836.t1
chr8.1 exon 8120813 8121538 8120813 ID=MS.gene26836.t1.exon4;Parent=MS.gene26836.t1
chr8.1 CDS 8120813 8121538 8120813 ID=cds.MS.gene26836.t1;Parent=MS.gene26836.t1
Gene Sequence

>MS.gene26836

ATGGCAAGTGCTCAGAACTCAATCAATTGTTCTCATGTGGCAGCTATAGCACAGTAAGTAGTATAATTACTTTCTTTCAATTTTTTCACCTTTTTCTTATATTGTTCTCAACTAATTCTTTATGTCACAAATGCATATTATTGCTCTATAATTATTTCACCCCTAATTCCTTATATACGAATTCAACAATAATATTTTGTGGATAAATAATAGTGTTATCATTTTACCTTTTAGCTATGTAGTAGTAATATGAATTTATTTGTGTAGGTTAGGAGTCACAGATTTAATTGATTTGAACAATGTTCCAAATAATGAACCGTGTGATAATTCAGAAAATGAAGTAATTGATTTGAGCAACGACGAGCAGGAAACAATTACTATCGAAAATTGTTTTGAACCTTTTATTGGACAATGTTTTCTAAGTGAGGAAGAAGCTTTCGGATTTTATGAGAATTATGCCAAAAGGAGTGGGTTCTCAATCCGGAAAGGTCGATTTCTTAAAAAAAATGGGATGATACATAGGAGGGATTTTTTCTGTCACCGAGAGGGATTTCCAGAAAAAAAATATCATGATCCATCTAAAGAACAACGAAATAGACAATCTTCAAGGTGTGGATGCAAAGCGGGCATGACAATCAAATTGAAGAAATCCTTTGAGATTTTTCCAAAAGAATGGCAAGTTATTGAACTTATATCCAACCATAATCATGATTTACTACCTCCAGATCAAGTGCGCTTCCTTGCATCTTACCACAACATTTCTGAGGAAGATGAGAAGCGAATTTCGTTATTAAAAGAAGCTGATCTTTCAGTCAAGCAAATAATGTGTGTTATGGAGCTTGAGAAAAATGTTAAGTATGGTGATCTTCCATTTCTTCGGAAAGATATTCATAATTTCTTCAATAAGATTCACCAAGGTAAATTGGATGGTGATGCTGATGATCTTTTACAATTTTGTAAGTGTGCCAAGGATGAAAACTCTTGCTTCCAATTTGCATTCACTGTTGATAAAGAAAAAAGACTAGAGAATATATTTTGGTCTCCACCTCATTGCTTTGAGTTGTACCAAGAATATGGAGAGGTCGTTGCATTTGATACTACCTACAAGGTGAATTCTTATAATATGCCTTTTGGCATTTTTGTTGGAATCGACAATCACGGAAGGACAATATTGTTTGGTTGCGCGCTCATTCGAAATGAAACTGCATCTACATTTCGATGGTTATAATTGTTTATAATTGTTTCCAAGTACAATCTAGAAGCAAACAAACACATAATAGGCTTGCATGAACTTAAGCAACATTGGGTACCGGCTTATCTTCGTGGACATTTCTTTGGGAGTATGACAACAACAGGAAGATCAGAGAGTATAAATGGGTTTGTGAAACGCTTTACTTCACCTCGTTCAAGTTTATTTAAACTTTTCAAACAAGTAAGTATTTATATGTTAATTTAGCTTAGTCACCTTGTTAATGTTTTCACCTTGGTGTTTGAGTAGAGTAAAAACCTCCCTGTGTTTATACTATGTTTTGGAGGATAGTTTTGGACAATAGGAGCACGTGTAGTATGCATCTGTTAGGAGTTGGCTAGCATGTTTTATGTCTCTGTTAGATATTTTGCTCTTCACAAGTGTGGTTTATGCATCTGTTAGGTGCATCATCTTCAAGCTATGCATGAATAAAATTTTGTTGATTAAAAAAATGTATAGAAAATGATACTTTAATAACTAATGGCATGTTTAATTTTTTTATCTAATATTTTAGGTTGATCTTGCCATTGAGGACATTGGGCAACAACAACTACATCACACCATGTTGGATACATATAGGGGATCTTCACTTCGATCATTATCCCCTATAGAGGAGCAAGTTCAAAGTATTTTCACAAATTTTGCGTTTAAGAAGTTCCAGGAGGAGTTTGAGAGGGCAACTCAATACAAGATTTGTGAAGAAAAGCATGTAGAATTTACTGTGAAATATTACAAGGAGCAACATTCACAAAAGCATAAAGTCTTATGGGATGGTGATGTTGTTGGTTGTAGTTGTAAGCATTTTGAGTTTTGGGGTATTCTTTGTCGTCATGTGTTGACAATATTTCTTCATAAAGATTGCTTTCAAATTCCAACAAGGTATCTGCCATTACGTTGGTGTCGTGATGAATTTCAAAGACCAGTCGAAGTAAATGTCATGTTTAGTGAAGTAGGACATAAAGGCAAGGGTCCATATATTGAGAATGTGGAGAATGCAGTAGAGTTTATTAGCAATCCTCCGCGTTCAATAACAAAAGGTCGTCCTAAAACAAAACGATCAAAAGGTGGAATCGAATTGTCAAGGAAAGCAAGAAGTTGTAGCTTTTGCAATAGAAGTGGTCACAATGTTACAACTTGTCCGGACAAAGAAGGTTATGTTCCGTCATCAACCATCAAAAAGAGGAAGAATGAAGCTCAAGCACAACAAAATTTAAATCCTATTTTATATTTAAAGTCTTAG
Protein sequence

>MS.gene26836.t1

MASAQNSINCSHVAAIAQLGVTDLIDLNNVPNNEPCDNSENEVIDLSNDEQETITIENCFEPFIGQCFLSEEEAFGFYENYAKRSGFSIRKGRFLKKNGMIHRRDFFCHREGFPEKKYHDPSKEQRNRQSSRCGCKAGMTIKLKKSFEIFPKEWQVIELISNHNHDLLPPDQVRFLASYHNISEEDEKRISLLKEADLSVKQIMCVMELEKNVKYGDLPFLRKDIHNFFNKIHQGKLDGDADDLLQFCKCAKDENSCFQFAFTVDKEKRLENIFWSPPHCFELYQEYGEVVAFDTTYKYNLEANKHIIGLHELKQHWVPAYLRGHFFGSMTTTGRSESINGFVKRFTSPRSSLFKLFKQVDLAIEDIGQQQLHHTMLDTYRGSSLRSLSPIEEQVQSIFTNFAFKKFQEEFERATQYKICEEKHVEFTVKYYKEQHSQKHKVLWDGDVVGCSCKHFEFWGILCRHVLTIFLHKDCFQIPTRYLPLRWCRDEFQRPVEVNVMFSEVGHKGKGPYIENVENAVEFISNPPRSITKGRPKTKRSKGGIELSRKARSCSFCNRSGHNVTTCPDKEGYVPSSTIKKRKNEAQAQQNLNPILYLKS