Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26864.t1 | KEH30946.1 | 78.4 | 399 | 59 | 3 | 1 | 399 | 1 | 372 | 6.30E-167 | 597 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26864.t1 | Q6X7J5 | 27.9 | 412 | 183 | 11 | 8 | 399 | 7 | 324 | 2.4e-26 | 121.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26864.t1 | A0A072UNJ4 | 78.4 | 399 | 59 | 3 | 1 | 399 | 1 | 372 | 4.5e-167 | 597.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene26864.t1 | TF | HB-WOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26864.t1 | MTR_4g088070 | 79.198 | 399 | 56 | 3 | 1 | 399 | 1 | 372 | 0.0 | 603 |
MS.gene26864.t1 | MTR_7g025010 | 57.985 | 407 | 149 | 6 | 8 | 400 | 7 | 405 | 2.22e-150 | 438 |
MS.gene26864.t1 | MTR_4g088080 | 70.871 | 333 | 80 | 3 | 1 | 333 | 1 | 316 | 1.77e-147 | 421 |
MS.gene26864.t1 | MTR_2g015000 | 37.671 | 438 | 188 | 18 | 8 | 399 | 7 | 405 | 3.67e-57 | 194 |
MS.gene26864.t1 | MTR_3g462480 | 67.647 | 68 | 22 | 0 | 332 | 399 | 22 | 89 | 1.79e-25 | 99.4 |
MS.gene26864.t1 | MTR_6g027390 | 63.333 | 60 | 22 | 0 | 35 | 94 | 24 | 83 | 8.20e-21 | 92.4 |
MS.gene26864.t1 | MTR_7g086940 | 67.308 | 52 | 17 | 0 | 41 | 92 | 26 | 77 | 2.54e-18 | 84.7 |
MS.gene26864.t1 | MTR_4g088065 | 46.903 | 113 | 45 | 4 | 52 | 163 | 134 | 232 | 4.93e-18 | 83.6 |
MS.gene26864.t1 | MTR_4g084550 | 46.269 | 67 | 36 | 0 | 37 | 103 | 58 | 124 | 4.19e-17 | 79.3 |
MS.gene26864.t1 | MTR_5g081990 | 37.778 | 90 | 50 | 1 | 14 | 103 | 10 | 93 | 8.52e-16 | 75.5 |
MS.gene26864.t1 | MTR_8g107210 | 49.180 | 61 | 31 | 0 | 43 | 103 | 96 | 156 | 1.92e-15 | 77.4 |
MS.gene26864.t1 | MTR_4g063735 | 30.508 | 177 | 91 | 3 | 43 | 189 | 25 | 199 | 3.50e-15 | 75.5 |
MS.gene26864.t1 | MTR_1g019130 | 49.180 | 61 | 31 | 0 | 43 | 103 | 90 | 150 | 4.02e-14 | 71.6 |
MS.gene26864.t1 | MTR_5g021930 | 41.975 | 81 | 45 | 2 | 43 | 122 | 30 | 109 | 5.53e-14 | 72.4 |
MS.gene26864.t1 | MTR_1g019130 | 40.449 | 89 | 43 | 1 | 15 | 103 | 72 | 150 | 1.17e-13 | 70.5 |
MS.gene26864.t1 | MTR_3g115620 | 33.010 | 103 | 62 | 1 | 41 | 143 | 80 | 175 | 6.12e-13 | 68.2 |
MS.gene26864.t1 | MTR_7g060630 | 43.333 | 60 | 34 | 0 | 43 | 102 | 8 | 67 | 2.25e-12 | 66.2 |
MS.gene26864.t1 | MTR_1g115315 | 41.270 | 63 | 37 | 0 | 40 | 102 | 82 | 144 | 1.11e-11 | 65.1 |
MS.gene26864.t1 | MTR_1g115315 | 41.270 | 63 | 37 | 0 | 40 | 102 | 82 | 144 | 1.23e-11 | 65.1 |
MS.gene26864.t1 | MTR_0777s0020 | 47.191 | 89 | 44 | 2 | 76 | 163 | 50 | 136 | 7.21e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26864.t1 | AT5G45980 | 47.244 | 127 | 51 | 2 | 9 | 119 | 8 | 134 | 3.64e-30 | 119 |
MS.gene26864.t1 | AT3G03660 | 47.872 | 94 | 39 | 2 | 1 | 94 | 1 | 84 | 7.11e-20 | 89.0 |
MS.gene26864.t1 | AT5G17810 | 66.667 | 54 | 18 | 0 | 41 | 94 | 19 | 72 | 1.22e-19 | 88.6 |
MS.gene26864.t1 | AT3G03660 | 47.872 | 94 | 39 | 2 | 1 | 94 | 1 | 84 | 1.23e-19 | 89.0 |
MS.gene26864.t1 | AT5G17810 | 66.667 | 54 | 18 | 0 | 41 | 94 | 19 | 72 | 1.33e-19 | 88.2 |
MS.gene26864.t1 | AT5G17810 | 66.667 | 54 | 18 | 0 | 41 | 94 | 19 | 72 | 1.33e-19 | 88.2 |
MS.gene26864.t1 | AT3G03660 | 47.872 | 94 | 39 | 2 | 1 | 94 | 1 | 84 | 2.00e-19 | 88.2 |
MS.gene26864.t1 | AT3G03660 | 47.872 | 94 | 39 | 2 | 1 | 94 | 1 | 84 | 3.43e-19 | 88.2 |
MS.gene26864.t1 | AT3G18010 | 47.541 | 61 | 32 | 0 | 43 | 103 | 76 | 136 | 4.84e-15 | 76.3 |
MS.gene26864.t1 | AT1G46480 | 47.826 | 69 | 35 | 1 | 35 | 103 | 83 | 150 | 1.82e-14 | 72.0 |
MS.gene26864.t1 | AT5G59340 | 26.667 | 180 | 122 | 4 | 43 | 216 | 14 | 189 | 3.36e-14 | 72.4 |
MS.gene26864.t1 | AT3G11260 | 44.262 | 61 | 34 | 0 | 43 | 103 | 24 | 84 | 6.39e-14 | 70.1 |
MS.gene26864.t1 | AT1G46480 | 47.826 | 69 | 35 | 1 | 35 | 103 | 83 | 150 | 8.28e-14 | 71.2 |
MS.gene26864.t1 | AT5G05770 | 43.333 | 60 | 34 | 0 | 43 | 102 | 29 | 88 | 1.05e-13 | 67.8 |
MS.gene26864.t1 | AT2G17950 | 50.000 | 62 | 30 | 1 | 43 | 103 | 38 | 99 | 1.25e-13 | 71.2 |
MS.gene26864.t1 | AT2G01500 | 49.091 | 55 | 28 | 0 | 43 | 97 | 61 | 115 | 4.64e-13 | 69.3 |
MS.gene26864.t1 | AT2G33880 | 45.205 | 73 | 36 | 1 | 327 | 399 | 309 | 377 | 5.20e-13 | 70.5 |
MS.gene26864.t1 | AT2G33880 | 45.205 | 73 | 36 | 1 | 327 | 399 | 309 | 377 | 6.97e-13 | 70.1 |
MS.gene26864.t1 | AT2G28610 | 42.424 | 66 | 38 | 0 | 37 | 102 | 2 | 67 | 1.98e-12 | 67.0 |
MS.gene26864.t1 | AT4G35550 | 42.857 | 63 | 36 | 0 | 41 | 103 | 97 | 159 | 3.72e-12 | 66.6 |
MS.gene26864.t1 | AT1G20700 | 41.270 | 63 | 37 | 0 | 41 | 103 | 31 | 93 | 8.24e-12 | 63.2 |
MS.gene26864.t1 | AT1G20700 | 36.486 | 74 | 47 | 0 | 30 | 103 | 82 | 155 | 9.25e-12 | 64.7 |
MS.gene26864.t1 | AT1G20700 | 36.486 | 74 | 47 | 0 | 30 | 103 | 82 | 155 | 1.13e-11 | 63.9 |
Find 99 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTGAACAATTAGAAGAATT+TGG | 0.130042 | 4.1:-22298034 | MS.gene26864:CDS |
CAAGACCCGCAATTTAATTT+TGG | 0.177107 | 4.1:-22297398 | MS.gene26864:CDS |
TTAGAAGAATTTGGGAAAAT+TGG | 0.179693 | 4.1:-22298025 | MS.gene26864:CDS |
CCATTGAGAAAGAGGAAAAT+AGG | 0.245649 | 4.1:+22297660 | None:intergenic |
AATAAGTATCATCTTGCTTT+TGG | 0.259990 | 4.1:+22297723 | None:intergenic |
AAAGGATTCACGAACGTTAA+AGG | 0.277504 | 4.1:+22297003 | None:intergenic |
ATGCGGATTTGCTCAGGCTT+TGG | 0.283372 | 4.1:+22298118 | None:intergenic |
ATGAACAATGAAAATGAAAA+TGG | 0.285973 | 4.1:-22297497 | MS.gene26864:CDS |
CACTCTCCCATCATTAATAT+TGG | 0.292661 | 4.1:+22297778 | None:intergenic |
GCCTGAGCAAATCCGCATTC+TGG | 0.308743 | 4.1:-22298113 | MS.gene26864:CDS |
TGCGGATTTGCTCAGGCTTT+GGG | 0.308960 | 4.1:+22298119 | None:intergenic |
TCAGGCTTTGGGTTCCATCT+TGG | 0.322968 | 4.1:+22298130 | None:intergenic |
TTTCACTGGGAGAGGCTCTT+TGG | 0.326910 | 4.1:+22297828 | None:intergenic |
GAAGTTGATCATCAGTAAAA+AGG | 0.326950 | 4.1:+22297282 | None:intergenic |
TTTGGGTTCCATCTTGGCCT+TGG | 0.327019 | 4.1:+22298136 | None:intergenic |
ATCACAATATCTAACAATAT+TGG | 0.329123 | 4.1:-22297806 | MS.gene26864:CDS |
GGAGAGATTGTGGATGAATT+AGG | 0.338412 | 4.1:+22297749 | None:intergenic |
GGTGGTGGTGGTGGGATTTG+TGG | 0.341213 | 4.1:+22297881 | None:intergenic |
GTGGTGGTGGTGGGATTTGT+GGG | 0.343259 | 4.1:+22297882 | None:intergenic |
GGTGAGGGTTCAATCATATT+CGG | 0.354951 | 4.1:+22297563 | None:intergenic |
ATTTGTGGGAGAGAGTTATT+AGG | 0.358733 | 4.1:+22297896 | None:intergenic |
GTGAACAATTAGAAGAATTT+GGG | 0.359582 | 4.1:-22298033 | MS.gene26864:CDS |
TTCCATCTTGGCCTTGGTCC+AGG | 0.361114 | 4.1:+22298142 | None:intergenic |
TGGTTGGAGTTCGACGAATT+TGG | 0.370437 | 4.1:+22298760 | None:intergenic |
GATGGATTAGGTGGTGGTGG+TGG | 0.376558 | 4.1:+22297872 | None:intergenic |
AGAGGCTCTTTGGTGATTAG+AGG | 0.377467 | 4.1:+22297838 | None:intergenic |
TTTACTGATGATCAACTTCA+AGG | 0.378920 | 4.1:-22297278 | MS.gene26864:intron |
AATTAAATTGCGGGTCTTGT+TGG | 0.379122 | 4.1:+22297402 | None:intergenic |
CTGGAAGCAATCTACAACTC+AGG | 0.386585 | 4.1:-22298094 | MS.gene26864:CDS |
GAAGATGATGAAGATGGATT+AGG | 0.391757 | 4.1:+22297860 | None:intergenic |
TGACACCAAAATTAAATTGC+GGG | 0.395460 | 4.1:+22297393 | None:intergenic |
CCCCATTCATCGGTTAGAAC+CGG | 0.398111 | 4.1:+22296944 | None:intergenic |
CCCGGTTCTAACCGATGAAT+GGG | 0.399463 | 4.1:-22296945 | MS.gene26864:CDS |
GTTGTAGATCGGTTTCAGTT+GGG | 0.400667 | 4.1:+22297693 | None:intergenic |
GATAATGAAGAAAGAAATCC+TGG | 0.405944 | 4.1:-22298160 | MS.gene26864:CDS |
CATTGAGAAAGAGGAAAATA+GGG | 0.407191 | 4.1:+22297661 | None:intergenic |
GTGCATGTGCATCATATTCA+TGG | 0.415898 | 4.1:+22297424 | None:intergenic |
TTAGGAGCTGGATCTGCAAT+TGG | 0.417412 | 4.1:+22297914 | None:intergenic |
TCCAGAATGCGGATTTGCTC+AGG | 0.421812 | 4.1:+22298112 | None:intergenic |
GTTAGATATTGTGATTTCAC+TGG | 0.434652 | 4.1:+22297814 | None:intergenic |
TTTAACGTTCGTGAATCCTT+TGG | 0.434959 | 4.1:-22297001 | MS.gene26864:CDS |
ATGATTCTCCATTGAGAAAG+AGG | 0.435482 | 4.1:+22297652 | None:intergenic |
GGAATCTCCAATATTAATGA+TGG | 0.437319 | 4.1:-22297785 | MS.gene26864:CDS |
GTGAGGGTTCAATCATATTC+GGG | 0.442014 | 4.1:+22297564 | None:intergenic |
AAGGATTCACGAACGTTAAA+GGG | 0.443421 | 4.1:+22297004 | None:intergenic |
ATCTTCTTGATTTCATCTAC+AGG | 0.443482 | 4.1:+22298058 | None:intergenic |
CCCCGGTTCTAACCGATGAA+TGG | 0.455370 | 4.1:-22296946 | MS.gene26864:CDS |
AGTTGTAGATCGGTTTCAGT+TGG | 0.468112 | 4.1:+22297692 | None:intergenic |
CCCATTCATCGGTTAGAACC+GGG | 0.470305 | 4.1:+22296945 | None:intergenic |
ATGGATTAGGTGGTGGTGGT+GGG | 0.472541 | 4.1:+22297873 | None:intergenic |
ATGTCAATGGCCGGAGGTAG+AGG | 0.473475 | 4.1:+22297329 | None:intergenic |
GGTGACTTTATAAACTTGCT+TGG | 0.474802 | 4.1:+22298781 | None:intergenic |
ATGGAGAATCATGTTAATGA+AGG | 0.479722 | 4.1:-22297641 | MS.gene26864:CDS |
TTGTAGATCGGTTTCAGTTG+GGG | 0.501118 | 4.1:+22297694 | None:intergenic |
GAAGATGGATTAGGTGGTGG+TGG | 0.501572 | 4.1:+22297869 | None:intergenic |
TATTGTGATTTCACTGGGAG+AGG | 0.511945 | 4.1:+22297820 | None:intergenic |
GGGAGAGAGTTATTAGGAGC+TGG | 0.513692 | 4.1:+22297902 | None:intergenic |
ATCCTGGACCAAGGCCAAGA+TGG | 0.528279 | 4.1:-22298144 | MS.gene26864:CDS |
GGTGCACTCATGTCAATGGC+CGG | 0.541661 | 4.1:+22297320 | None:intergenic |
AGCAGGTGCACTCATGTCAA+TGG | 0.543766 | 4.1:+22297316 | None:intergenic |
GTTAACCTCGATTACTTCGT+TGG | 0.544175 | 4.1:+22297033 | None:intergenic |
AAAAGGAATGGAATATCAGC+AGG | 0.549420 | 4.1:+22297299 | None:intergenic |
TCCATGGTAGAGTGAGTTGA+GGG | 0.553586 | 4.1:+22296916 | None:intergenic |
TTCTTGATTTCATCTACAGG+TGG | 0.556034 | 4.1:+22298061 | None:intergenic |
GAGGGTGACACCCCATTCAT+CGG | 0.558082 | 4.1:+22296934 | None:intergenic |
TGGAGAATCATGTTAATGAA+GGG | 0.558945 | 4.1:-22297640 | MS.gene26864:CDS |
TGATCAAGTGAATGTTCAAG+AGG | 0.560823 | 4.1:-22297450 | MS.gene26864:CDS |
GTTTGACTCCTTCTGTACCC+CGG | 0.561060 | 4.1:-22296963 | MS.gene26864:CDS |
TTAGAGGAAGATGATGAAGA+TGG | 0.564984 | 4.1:+22297854 | None:intergenic |
AACCATCAAAATCGTCTGCA+TGG | 0.567329 | 4.1:-22298742 | MS.gene26864:intron |
GAATCTCCAATATTAATGAT+GGG | 0.575519 | 4.1:-22297784 | MS.gene26864:CDS |
GGTTAGAACCGGGGTACAGA+AGG | 0.581477 | 4.1:+22296955 | None:intergenic |
TTAGATATTGTGATTTCACT+GGG | 0.581998 | 4.1:+22297815 | None:intergenic |
CTCCATGGTAGAGTGAGTTG+AGG | 0.583077 | 4.1:+22296915 | None:intergenic |
TGATCTTGCTCCTCTACCTC+CGG | 0.584790 | 4.1:-22297339 | MS.gene26864:CDS |
GTGACACCAAAATTAAATTG+CGG | 0.589142 | 4.1:+22297392 | None:intergenic |
TGGAAGCAATCTACAACTCA+GGG | 0.590445 | 4.1:-22298093 | MS.gene26864:CDS |
ATGTTATCATAATTAAGCAC+AGG | 0.594226 | 4.1:+22297521 | None:intergenic |
TTTCAAAACCGCAAGTCCAA+AGG | 0.599228 | 4.1:-22297980 | MS.gene26864:CDS |
CCACGTAATAATCAGCTCCA+TGG | 0.601206 | 4.1:+22296900 | None:intergenic |
TGTAGATTGCTTCCAGAATG+CGG | 0.605667 | 4.1:+22298101 | None:intergenic |
GAAGTAATCGAGGTTAACGC+AGG | 0.607642 | 4.1:-22297028 | MS.gene26864:CDS |
TACTGCCAACGAAGTAATCG+AGG | 0.608047 | 4.1:-22297038 | MS.gene26864:CDS |
GGAGAATCATGTTAATGAAG+GGG | 0.615858 | 4.1:-22297639 | MS.gene26864:CDS |
CAGAACTGCTCTATTACCAA+AGG | 0.619722 | 4.1:+22296985 | None:intergenic |
AATGACATGACAACACTAGA+GGG | 0.631034 | 4.1:-22297608 | MS.gene26864:CDS |
GATGATGAAGATGGATTAGG+TGG | 0.643509 | 4.1:+22297863 | None:intergenic |
ACCCTCAACTCACTCTACCA+TGG | 0.647606 | 4.1:-22296917 | MS.gene26864:CDS |
TAATGACATGACAACACTAG+AGG | 0.647700 | 4.1:-22297609 | MS.gene26864:CDS |
GATGAAGATGGATTAGGTGG+TGG | 0.649565 | 4.1:+22297866 | None:intergenic |
CTCGTAAGAAGAAAGTACAT+TGG | 0.652355 | 4.1:-22298804 | MS.gene26864:CDS |
AAGAAAGAAATCCTGGACCA+AGG | 0.658709 | 4.1:-22298153 | MS.gene26864:CDS |
CCATGGAGCTGATTATTACG+TGG | 0.665604 | 4.1:-22296900 | MS.gene26864:intron |
AAGTAATCGAGGTTAACGCA+GGG | 0.673390 | 4.1:-22297027 | MS.gene26864:CDS |
ATGACATGACAACACTAGAG+GGG | 0.676653 | 4.1:-22297607 | MS.gene26864:CDS |
TATTAATGATGGGAGAGTGT+TGG | 0.676983 | 4.1:-22297774 | MS.gene26864:CDS |
CCGGTTCTAACCGATGAATG+GGG | 0.682846 | 4.1:-22296944 | MS.gene26864:CDS |
CCATTCATCGGTTAGAACCG+GGG | 0.687831 | 4.1:+22296946 | None:intergenic |
GCACTCATGTCAATGGCCGG+AGG | 0.689498 | 4.1:+22297323 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTATAATAATAAAATAA+TGG | - | chr4.1:22298482-22298501 | MS.gene26864:intron | 0.0% |
!! | AAAAATTTACTAAAAAAAAG+AGG | - | chr4.1:22298556-22298575 | MS.gene26864:intron | 10.0% |
!! | TAATAATAATAAAAAGTAGA+AGG | + | chr4.1:22296249-22296268 | None:intergenic | 10.0% |
!!! | ATTTCTAAAACTATTTTTTA+TGG | + | chr4.1:22296641-22296660 | None:intergenic | 10.0% |
!!! | CTTTTTACTAAAAAAATTAA+AGG | + | chr4.1:22298456-22298475 | None:intergenic | 10.0% |
!!! | TTATTTTTCATATATAACTA+TGG | - | chr4.1:22298709-22298728 | MS.gene26864:intron | 10.0% |
!!! | TTTCTAAAACTATTTTTTAT+GGG | + | chr4.1:22296640-22296659 | None:intergenic | 10.0% |
!! | AATTACAAATATAGATGATT+TGG | - | chr4.1:22298171-22298190 | MS.gene26864:intron | 15.0% |
!! | TATATAACTATGGATTTAAT+TGG | - | chr4.1:22298719-22298738 | MS.gene26864:intron | 15.0% |
!!! | ATTTTTTTAAAGCTAAGATT+AGG | + | chr4.1:22296494-22296513 | None:intergenic | 15.0% |
!!! | TTATTTTGAAAATTACGTAT+AGG | - | chr4.1:22298803-22298822 | MS.gene26864:CDS | 15.0% |
!! | AAAAAATATTTACACCCATA+AGG | + | chr4.1:22298749-22298768 | None:intergenic | 20.0% |
!! | ATCACAATATCTAACAATAT+TGG | - | chr4.1:22297122-22297141 | MS.gene26864:intron | 20.0% |
!! | ATGAACAATGAAAATGAAAA+TGG | - | chr4.1:22297431-22297450 | MS.gene26864:CDS | 20.0% |
!! | ATTACCTAATCAAAATGATT+TGG | + | chr4.1:22298328-22298347 | None:intergenic | 20.0% |
!! | ATTTAATTGGTATACCTTAT+GGG | - | chr4.1:22298732-22298751 | MS.gene26864:intron | 20.0% |
!! | GCTTATAACAAATATTGTTT+AGG | - | chr4.1:22296741-22296760 | MS.gene26864:intron | 20.0% |
!! | TATAACAAATATTGTTTAGG+TGG | - | chr4.1:22296744-22296763 | MS.gene26864:intron | 20.0% |
!! | TTACCTAATCAAAATGATTT+GGG | + | chr4.1:22298327-22298346 | None:intergenic | 20.0% |
!! | TTTATAAGGGAAAATGATTT+GGG | + | chr4.1:22298294-22298313 | None:intergenic | 20.0% |
!! | TTTGATTAGGTAATGATATT+TGG | - | chr4.1:22298334-22298353 | MS.gene26864:intron | 20.0% |
!!! | AAGATCAAATAGTAGATTTT+AGG | + | chr4.1:22296524-22296543 | None:intergenic | 20.0% |
!!! | AATTAGTGTTGAAGAATTAA+TGG | + | chr4.1:22298363-22298382 | None:intergenic | 20.0% |
!!! | GGGAACTTTTTTTTTTATAA+GGG | + | chr4.1:22298307-22298326 | None:intergenic | 20.0% |
!!! | TGGGAACTTTTTTTTTTATA+AGG | + | chr4.1:22298308-22298327 | None:intergenic | 20.0% |
!!! | TTAGTTTTTTTTCCATGTTA+GGG | - | chr4.1:22296416-22296435 | MS.gene26864:intron | 20.0% |
!!! | TTTAGTTTTTTTTCCATGTT+AGG | - | chr4.1:22296415-22296434 | MS.gene26864:intron | 20.0% |
!!! | TTTTATAAGGGAAAATGATT+TGG | + | chr4.1:22298295-22298314 | None:intergenic | 20.0% |
! | AAATAGAGAGATCAATAATG+TGG | + | chr4.1:22298646-22298665 | None:intergenic | 25.0% |
! | ATGTTATCATAATTAAGCAC+AGG | + | chr4.1:22297410-22297429 | None:intergenic | 25.0% |
! | GAATCTCCAATATTAATGAT+GGG | - | chr4.1:22297144-22297163 | MS.gene26864:intron | 25.0% |
! | GATTTAATTGGTATACCTTA+TGG | - | chr4.1:22298731-22298750 | MS.gene26864:intron | 25.0% |
! | GTGAACAATTAGAAGAATTT+GGG | - | chr4.1:22296895-22296914 | MS.gene26864:intron | 25.0% |
! | TTAGAAGAATTTGGGAAAAT+TGG | - | chr4.1:22296903-22296922 | MS.gene26864:CDS | 25.0% |
! | TTAGATATTGTGATTTCACT+GGG | + | chr4.1:22297116-22297135 | None:intergenic | 25.0% |
!! | AATAAGTATCATCTTGCTTT+TGG | + | chr4.1:22297208-22297227 | None:intergenic | 25.0% |
!! | TAATTTGTACGTGTCTAATA+TGG | - | chr4.1:22298404-22298423 | MS.gene26864:intron | 25.0% |
!! | TACTATTTGATCTTTTCCAA+TGG | - | chr4.1:22296530-22296549 | MS.gene26864:intron | 25.0% |
!! | TATAACGATTAGTTGATGTT+TGG | - | chr4.1:22297820-22297839 | MS.gene26864:CDS | 25.0% |
!!! | CATCTTTTGATCATTTTTAG+AGG | + | chr4.1:22298431-22298450 | None:intergenic | 25.0% |
!!! | TAGTTTTTTTTCCATGTTAG+GGG | - | chr4.1:22296417-22296436 | MS.gene26864:intron | 25.0% |
!!! | TCGATATAATTTGTTTCGAT+TGG | + | chr4.1:22296395-22296414 | None:intergenic | 25.0% |
AAAAAGTAGAAGGAGTTGTT+TGG | + | chr4.1:22296239-22296258 | None:intergenic | 30.0% | |
ATCTTCTTGATTTCATCTAC+AGG | + | chr4.1:22296873-22296892 | None:intergenic | 30.0% | |
ATGGAGAATCATGTTAATGA+AGG | - | chr4.1:22297287-22297306 | MS.gene26864:CDS | 30.0% | |
CACTTGATCAAAAAGATCAT+TGG | + | chr4.1:22297468-22297487 | None:intergenic | 30.0% | |
CATTGAGAAAGAGGAAAATA+GGG | + | chr4.1:22297270-22297289 | None:intergenic | 30.0% | |
CGTGAACAATTAGAAGAATT+TGG | - | chr4.1:22296894-22296913 | MS.gene26864:intron | 30.0% | |
CTAATATAGATCAAGTCCAA+TGG | + | chr4.1:22298587-22298606 | None:intergenic | 30.0% | |
GATAATGAAGAAAGAAATCC+TGG | - | chr4.1:22296768-22296787 | MS.gene26864:intron | 30.0% | |
GGAATCTCCAATATTAATGA+TGG | - | chr4.1:22297143-22297162 | MS.gene26864:intron | 30.0% | |
GTAAACTTTGCATGTTTGAT+CGG | - | chr4.1:22296719-22296738 | MS.gene26864:intron | 30.0% | |
GTGACACCAAAATTAAATTG+CGG | + | chr4.1:22297539-22297558 | None:intergenic | 30.0% | |
GTTAGATATTGTGATTTCAC+TGG | + | chr4.1:22297117-22297136 | None:intergenic | 30.0% | |
TACTAGAGATCATGTTTGTT+TGG | + | chr4.1:22296461-22296480 | None:intergenic | 30.0% | |
TGACACCAAAATTAAATTGC+GGG | + | chr4.1:22297538-22297557 | None:intergenic | 30.0% | |
TGATCATCAGTAAAAAGGAA+TGG | + | chr4.1:22297644-22297663 | None:intergenic | 30.0% | |
TGGAGAATCATGTTAATGAA+GGG | - | chr4.1:22297288-22297307 | MS.gene26864:CDS | 30.0% | |
TTAGGATTTCAATGCAAGTA+AGG | - | chr4.1:22296582-22296601 | MS.gene26864:intron | 30.0% | |
TTGCTTGAATGTGTGAATTT+AGG | + | chr4.1:22296611-22296630 | None:intergenic | 30.0% | |
TTTACTGATGATCAACTTCA+AGG | - | chr4.1:22297650-22297669 | MS.gene26864:CDS | 30.0% | |
! | AAAGAGGAAAATAGGGTTTT+AGG | + | chr4.1:22297263-22297282 | None:intergenic | 30.0% |
! | GAAGTTGATCATCAGTAAAA+AGG | + | chr4.1:22297649-22297668 | None:intergenic | 30.0% |
!!! | GGTTGTCTTTTTGATTTCTT+GGG | + | chr4.1:22296996-22297015 | None:intergenic | 30.0% |
!!! | GTTCCCAAATCATTTTGATT+AGG | - | chr4.1:22298321-22298340 | MS.gene26864:intron | 30.0% |
!!! | GTTGTCTTTTTGATTTCTTG+GGG | + | chr4.1:22296995-22297014 | None:intergenic | 30.0% |
!!! | TGCTTTTTTGTTTTTGCCTT+TGG | + | chr4.1:22296967-22296986 | None:intergenic | 30.0% |
!!! | TGGTTGTCTTTTTGATTTCT+TGG | + | chr4.1:22296997-22297016 | None:intergenic | 30.0% |
!!! | TTAGTTGATGTTTGGTTTTC+AGG | - | chr4.1:22297828-22297847 | MS.gene26864:CDS | 30.0% |
AAAAAAAGAGGATCCACCAT+TGG | - | chr4.1:22298568-22298587 | MS.gene26864:intron | 35.0% | |
AAAAGGAATGGAATATCAGC+AGG | + | chr4.1:22297632-22297651 | None:intergenic | 35.0% | |
AAAGGATTCACGAACGTTAA+AGG | + | chr4.1:22297928-22297947 | None:intergenic | 35.0% | |
AAGGATTCACGAACGTTAAA+GGG | + | chr4.1:22297927-22297946 | None:intergenic | 35.0% | |
AATGACATGACAACACTAGA+GGG | - | chr4.1:22297320-22297339 | MS.gene26864:CDS | 35.0% | |
ACCCAAAATTTCAAGCACAA+GGG | - | chr4.1:22297706-22297725 | MS.gene26864:CDS | 35.0% | |
ATATAGATCAAGTCCAATGG+TGG | + | chr4.1:22298584-22298603 | None:intergenic | 35.0% | |
ATGATTCTCCATTGAGAAAG+AGG | + | chr4.1:22297279-22297298 | None:intergenic | 35.0% | |
ATTTGTGGGAGAGAGTTATT+AGG | + | chr4.1:22297035-22297054 | None:intergenic | 35.0% | |
CACTCTCCCATCATTAATAT+TGG | + | chr4.1:22297153-22297172 | None:intergenic | 35.0% | |
CCATTGAGAAAGAGGAAAAT+AGG | + | chr4.1:22297271-22297290 | None:intergenic | 35.0% | |
GGAGAATCATGTTAATGAAG+GGG | - | chr4.1:22297289-22297308 | MS.gene26864:CDS | 35.0% | |
GGTAAATAGTGTGAAGTGAT+AGG | + | chr4.1:22298625-22298644 | None:intergenic | 35.0% | |
TAATGACATGACAACACTAG+AGG | - | chr4.1:22297319-22297338 | MS.gene26864:CDS | 35.0% | |
TGATCAAGTGAATGTTCAAG+AGG | - | chr4.1:22297478-22297497 | MS.gene26864:CDS | 35.0% | |
TGTGAAGTGATAGGAAAAGA+GGG | + | chr4.1:22298616-22298635 | None:intergenic | 35.0% | |
TGTTTATATGTCCCCTAACA+TGG | + | chr4.1:22296431-22296450 | None:intergenic | 35.0% | |
TTAGAGGAAGATGATGAAGA+TGG | + | chr4.1:22297077-22297096 | None:intergenic | 35.0% | |
TTCTTGATTTCATCTACAGG+TGG | + | chr4.1:22296870-22296889 | None:intergenic | 35.0% | |
TTGCTTGACGGTGTAAATTT+AGG | - | chr4.1:22296564-22296583 | MS.gene26864:intron | 35.0% | |
TTTAACGTTCGTGAATCCTT+TGG | - | chr4.1:22297927-22297946 | MS.gene26864:CDS | 35.0% | |
TTTACACCGTCAAGCAAATA+TGG | + | chr4.1:22296561-22296580 | None:intergenic | 35.0% | |
! | AATTAAATTGCGGGTCTTGT+TGG | + | chr4.1:22297529-22297548 | None:intergenic | 35.0% |
! | ACCCTTGTGCTTGAAATTTT+GGG | + | chr4.1:22297710-22297729 | None:intergenic | 35.0% |
! | ATCAACATTTTGTTGAGGTG+AGG | + | chr4.1:22297384-22297403 | None:intergenic | 35.0% |
! | CCTATTTTCCTCTTTCTCAA+TGG | - | chr4.1:22297268-22297287 | MS.gene26864:intron | 35.0% |
! | CTCGTAAGAAGAAAGTACAT+TGG | - | chr4.1:22296124-22296143 | MS.gene26864:intron | 35.0% |
! | GAAGATGATGAAGATGGATT+AGG | + | chr4.1:22297071-22297090 | None:intergenic | 35.0% |
! | GGAAGATCAACATTTTGTTG+AGG | + | chr4.1:22297389-22297408 | None:intergenic | 35.0% |
! | GGTGACTTTATAAACTTGCT+TGG | + | chr4.1:22296150-22296169 | None:intergenic | 35.0% |
! | TACCCTTGTGCTTGAAATTT+TGG | + | chr4.1:22297711-22297730 | None:intergenic | 35.0% |
! | TATTAATGATGGGAGAGTGT+TGG | - | chr4.1:22297154-22297173 | MS.gene26864:intron | 35.0% |
! | TCAACATTTTGTTGAGGTGA+GGG | + | chr4.1:22297383-22297402 | None:intergenic | 35.0% |
!! | CAAGACCCGCAATTTAATTT+TGG | - | chr4.1:22297530-22297549 | MS.gene26864:CDS | 35.0% |
!! | GTATCATCTTGCTTTTGGTT+CGG | + | chr4.1:22297203-22297222 | None:intergenic | 35.0% |
!!! | CTTTTTGATTTCTTGGGGTA+GGG | + | chr4.1:22296990-22297009 | None:intergenic | 35.0% |
!!! | GATGTTTGGTTTTCAGGTTT+TGG | - | chr4.1:22297834-22297853 | MS.gene26864:CDS | 35.0% |
!!! | GGTTTTAGGTAGTTGTAGAT+CGG | + | chr4.1:22297249-22297268 | None:intergenic | 35.0% |
!!! | TCTTTTTGATTTCTTGGGGT+AGG | + | chr4.1:22296991-22297010 | None:intergenic | 35.0% |
AACCATCAAAATCGTCTGCA+TGG | - | chr4.1:22296186-22296205 | MS.gene26864:intron | 40.0% | |
AAGAAAGAAATCCTGGACCA+AGG | - | chr4.1:22296775-22296794 | MS.gene26864:intron | 40.0% | |
AAGTAATCGAGGTTAACGCA+GGG | - | chr4.1:22297901-22297920 | MS.gene26864:CDS | 40.0% | |
AGCAAATATGGTCAGACCAT+TGG | + | chr4.1:22296549-22296568 | None:intergenic | 40.0% | |
ATGACATGACAACACTAGAG+GGG | - | chr4.1:22297321-22297340 | MS.gene26864:CDS | 40.0% | |
CACCCAAAATTTCAAGCACA+AGG | - | chr4.1:22297705-22297724 | MS.gene26864:CDS | 40.0% | |
CAGAACTGCTCTATTACCAA+AGG | + | chr4.1:22297946-22297965 | None:intergenic | 40.0% | |
GGAGAGATTGTGGATGAATT+AGG | + | chr4.1:22297182-22297201 | None:intergenic | 40.0% | |
GGTGAGGGTTCAATCATATT+CGG | + | chr4.1:22297368-22297387 | None:intergenic | 40.0% | |
GTCTGACCATATTTGCTTGA+CGG | - | chr4.1:22296552-22296571 | MS.gene26864:intron | 40.0% | |
GTGAAGTGATAGGAAAAGAG+GGG | + | chr4.1:22298615-22298634 | None:intergenic | 40.0% | |
GTGAGGGTTCAATCATATTC+GGG | + | chr4.1:22297367-22297386 | None:intergenic | 40.0% | |
GTGCATGTGCATCATATTCA+TGG | + | chr4.1:22297507-22297526 | None:intergenic | 40.0% | |
GTGTGAAGTGATAGGAAAAG+AGG | + | chr4.1:22298617-22298636 | None:intergenic | 40.0% | |
GTTAACCTCGATTACTTCGT+TGG | + | chr4.1:22297898-22297917 | None:intergenic | 40.0% | |
TATTGTGATTTCACTGGGAG+AGG | + | chr4.1:22297111-22297130 | None:intergenic | 40.0% | |
TGAAGTGATAGGAAAAGAGG+GGG | + | chr4.1:22298614-22298633 | None:intergenic | 40.0% | |
TGAGTGAACAACAGTTGCTT+AGG | - | chr4.1:22298145-22298164 | MS.gene26864:CDS | 40.0% | |
TGGAAGCAATCTACAACTCA+GGG | - | chr4.1:22296835-22296854 | MS.gene26864:intron | 40.0% | |
TGTAGATTGCTTCCAGAATG+CGG | + | chr4.1:22296830-22296849 | None:intergenic | 40.0% | |
TTTCAAAACCGCAAGTCCAA+AGG | - | chr4.1:22296948-22296967 | MS.gene26864:CDS | 40.0% | |
! | AGTTGTAGATCGGTTTCAGT+TGG | + | chr4.1:22297239-22297258 | None:intergenic | 40.0% |
! | GTGATTCGAGTGTCTTTTAC+TGG | - | chr4.1:22296925-22296944 | MS.gene26864:CDS | 40.0% |
! | GTTGTAGATCGGTTTCAGTT+GGG | + | chr4.1:22297238-22297257 | None:intergenic | 40.0% |
! | TACCATGCAGACGATTTTGA+TGG | + | chr4.1:22296191-22296210 | None:intergenic | 40.0% |
! | TTGTAGATCGGTTTCAGTTG+GGG | + | chr4.1:22297237-22297256 | None:intergenic | 40.0% |
!! | ATGCAGACGATTTTGATGGT+TGG | + | chr4.1:22296187-22296206 | None:intergenic | 40.0% |
!! | GATGATGAAGATGGATTAGG+TGG | + | chr4.1:22297068-22297087 | None:intergenic | 40.0% |
!! | TGTTTTTGCCTTTGGACTTG+CGG | + | chr4.1:22296959-22296978 | None:intergenic | 40.0% |
!!! | TTGGTTTTCAGGTTTTGGTG+AGG | - | chr4.1:22297839-22297858 | MS.gene26864:CDS | 40.0% |
AGACCATTGAAGAGAGAGGA+GGG | + | chr4.1:22296216-22296235 | None:intergenic | 45.0% | |
ATAGACGTGTGCAATGTGCA+TGG | - | chr4.1:22297752-22297771 | MS.gene26864:CDS | 45.0% | |
ATGCACATTGCACACGTCTA+TGG | + | chr4.1:22297753-22297772 | None:intergenic | 45.0% | |
CCACGTAATAATCAGCTCCA+TGG | + | chr4.1:22298031-22298050 | None:intergenic | 45.0% | |
CCATGGAGCTGATTATTACG+TGG | - | chr4.1:22298028-22298047 | MS.gene26864:CDS | 45.0% | |
CTGGAAGCAATCTACAACTC+AGG | - | chr4.1:22296834-22296853 | MS.gene26864:intron | 45.0% | |
GAAGTAATCGAGGTTAACGC+AGG | - | chr4.1:22297900-22297919 | MS.gene26864:CDS | 45.0% | |
TACTGCCAACGAAGTAATCG+AGG | - | chr4.1:22297890-22297909 | MS.gene26864:CDS | 45.0% | |
TGCACATTGCACACGTCTAT+GGG | + | chr4.1:22297752-22297771 | None:intergenic | 45.0% | |
TGGTTGGAGTTCGACGAATT+TGG | + | chr4.1:22296171-22296190 | None:intergenic | 45.0% | |
TTAGGAGCTGGATCTGCAAT+TGG | + | chr4.1:22297017-22297036 | None:intergenic | 45.0% | |
TTGGAGACCATTGAAGAGAG+AGG | + | chr4.1:22296220-22296239 | None:intergenic | 45.0% | |
! | AGAGGCTCTTTGGTGATTAG+AGG | + | chr4.1:22297093-22297112 | None:intergenic | 45.0% |
! | TCCATGGTAGAGTGAGTTGA+GGG | + | chr4.1:22298015-22298034 | None:intergenic | 45.0% |
!! | GATGAAGATGGATTAGGTGG+TGG | + | chr4.1:22297065-22297084 | None:intergenic | 45.0% |
!! | TCAGGTTTTGGTGAGGAAGA+TGG | - | chr4.1:22297846-22297865 | MS.gene26864:CDS | 45.0% |
!!! | CTTTTGGTTCGGAGAGATTG+TGG | + | chr4.1:22297192-22297211 | None:intergenic | 45.0% |
AACCCCTCCTCTCTCTTCAA+TGG | - | chr4.1:22296210-22296229 | MS.gene26864:intron | 50.0% | |
ACCCTCAACTCACTCTACCA+TGG | - | chr4.1:22298011-22298030 | MS.gene26864:CDS | 50.0% | |
AGCAGGTGCACTCATGTCAA+TGG | + | chr4.1:22297615-22297634 | None:intergenic | 50.0% | |
CTCCATGGTAGAGTGAGTTG+AGG | + | chr4.1:22298016-22298035 | None:intergenic | 50.0% | |
GACCATTGAAGAGAGAGGAG+GGG | + | chr4.1:22296215-22296234 | None:intergenic | 50.0% | |
GAGACCATTGAAGAGAGAGG+AGG | + | chr4.1:22296217-22296236 | None:intergenic | 50.0% | |
GGGAGAGAGTTATTAGGAGC+TGG | + | chr4.1:22297029-22297048 | None:intergenic | 50.0% | |
GTTTGACTCCTTCTGTACCC+CGG | - | chr4.1:22297965-22297984 | MS.gene26864:CDS | 50.0% | |
TGATCTTGCTCCTCTACCTC+CGG | - | chr4.1:22297589-22297608 | MS.gene26864:CDS | 50.0% | |
TTTCACTGGGAGAGGCTCTT+TGG | + | chr4.1:22297103-22297122 | None:intergenic | 50.0% | |
! | ATGCGGATTTGCTCAGGCTT+TGG | + | chr4.1:22296813-22296832 | None:intergenic | 50.0% |
! | CCATTCATCGGTTAGAACCG+GGG | + | chr4.1:22297985-22298004 | None:intergenic | 50.0% |
! | CCCATTCATCGGTTAGAACC+GGG | + | chr4.1:22297986-22298005 | None:intergenic | 50.0% |
! | CCCCATTCATCGGTTAGAAC+CGG | + | chr4.1:22297987-22298006 | None:intergenic | 50.0% |
! | CCCGGTTCTAACCGATGAAT+GGG | - | chr4.1:22297983-22298002 | MS.gene26864:CDS | 50.0% |
! | CCGGTTCTAACCGATGAATG+GGG | - | chr4.1:22297984-22298003 | MS.gene26864:CDS | 50.0% |
! | TCCAGAATGCGGATTTGCTC+AGG | + | chr4.1:22296819-22296838 | None:intergenic | 50.0% |
! | TGCGGATTTGCTCAGGCTTT+GGG | + | chr4.1:22296812-22296831 | None:intergenic | 50.0% |
! | TTTGGGTTCCATCTTGGCCT+TGG | + | chr4.1:22296795-22296814 | None:intergenic | 50.0% |
!! | ATGGATTAGGTGGTGGTGGT+GGG | + | chr4.1:22297058-22297077 | None:intergenic | 50.0% |
!! | GAAGATGGATTAGGTGGTGG+TGG | + | chr4.1:22297062-22297081 | None:intergenic | 50.0% |
!! | TCAGGCTTTGGGTTCCATCT+TGG | + | chr4.1:22296801-22296820 | None:intergenic | 50.0% |
ATCCTGGACCAAGGCCAAGA+TGG | - | chr4.1:22296784-22296803 | MS.gene26864:intron | 55.0% | |
ATGTCAATGGCCGGAGGTAG+AGG | + | chr4.1:22297602-22297621 | None:intergenic | 55.0% | |
GAGGGTGACACCCCATTCAT+CGG | + | chr4.1:22297997-22298016 | None:intergenic | 55.0% | |
GCCTGAGCAAATCCGCATTC+TGG | - | chr4.1:22296815-22296834 | MS.gene26864:intron | 55.0% | |
GGTGCACTCATGTCAATGGC+CGG | + | chr4.1:22297611-22297630 | None:intergenic | 55.0% | |
GGTTAGAACCGGGGTACAGA+AGG | + | chr4.1:22297976-22297995 | None:intergenic | 55.0% | |
! | CCCCGGTTCTAACCGATGAA+TGG | - | chr4.1:22297982-22298001 | MS.gene26864:CDS | 55.0% |
!! | GATGGATTAGGTGGTGGTGG+TGG | + | chr4.1:22297059-22297078 | None:intergenic | 55.0% |
!! | GTGGTGGTGGTGGGATTTGT+GGG | + | chr4.1:22297049-22297068 | None:intergenic | 55.0% |
!! | TTCCATCTTGGCCTTGGTCC+AGG | + | chr4.1:22296789-22296808 | None:intergenic | 55.0% |
GCACTCATGTCAATGGCCGG+AGG | + | chr4.1:22297608-22297627 | None:intergenic | 60.0% | |
!! | GGTGGTGGTGGTGGGATTTG+TGG | + | chr4.1:22297050-22297069 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 22296120 | 22298830 | 22296120 | ID=MS.gene26864 |
chr4.1 | mRNA | 22296120 | 22298830 | 22296120 | ID=MS.gene26864.t1;Parent=MS.gene26864 |
chr4.1 | exon | 22298743 | 22298830 | 22298743 | ID=MS.gene26864.t1.exon1;Parent=MS.gene26864.t1 |
chr4.1 | CDS | 22298743 | 22298830 | 22298743 | ID=cds.MS.gene26864.t1;Parent=MS.gene26864.t1 |
chr4.1 | exon | 22297279 | 22298187 | 22297279 | ID=MS.gene26864.t1.exon2;Parent=MS.gene26864.t1 |
chr4.1 | CDS | 22297279 | 22298187 | 22297279 | ID=cds.MS.gene26864.t1;Parent=MS.gene26864.t1 |
chr4.1 | exon | 22296901 | 22297100 | 22296901 | ID=MS.gene26864.t1.exon3;Parent=MS.gene26864.t1 |
chr4.1 | CDS | 22296901 | 22297100 | 22296901 | ID=cds.MS.gene26864.t1;Parent=MS.gene26864.t1 |
chr4.1 | exon | 22296120 | 22296125 | 22296120 | ID=MS.gene26864.t1.exon4;Parent=MS.gene26864.t1 |
chr4.1 | CDS | 22296120 | 22296125 | 22296120 | ID=cds.MS.gene26864.t1;Parent=MS.gene26864.t1 |
Gene Sequence |
Protein sequence |