AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26864


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26864.t1 MTR_4g088070 79.198 399 56 3 1 399 1 372 0.0 603
MS.gene26864.t1 MTR_7g025010 57.985 407 149 6 8 400 7 405 2.22e-150 438
MS.gene26864.t1 MTR_4g088080 70.871 333 80 3 1 333 1 316 1.77e-147 421
MS.gene26864.t1 MTR_2g015000 37.671 438 188 18 8 399 7 405 3.67e-57 194
MS.gene26864.t1 MTR_3g462480 67.647 68 22 0 332 399 22 89 1.79e-25 99.4
MS.gene26864.t1 MTR_6g027390 63.333 60 22 0 35 94 24 83 8.20e-21 92.4
MS.gene26864.t1 MTR_7g086940 67.308 52 17 0 41 92 26 77 2.54e-18 84.7
MS.gene26864.t1 MTR_4g088065 46.903 113 45 4 52 163 134 232 4.93e-18 83.6
MS.gene26864.t1 MTR_4g084550 46.269 67 36 0 37 103 58 124 4.19e-17 79.3
MS.gene26864.t1 MTR_5g081990 37.778 90 50 1 14 103 10 93 8.52e-16 75.5
MS.gene26864.t1 MTR_8g107210 49.180 61 31 0 43 103 96 156 1.92e-15 77.4
MS.gene26864.t1 MTR_4g063735 30.508 177 91 3 43 189 25 199 3.50e-15 75.5
MS.gene26864.t1 MTR_1g019130 49.180 61 31 0 43 103 90 150 4.02e-14 71.6
MS.gene26864.t1 MTR_5g021930 41.975 81 45 2 43 122 30 109 5.53e-14 72.4
MS.gene26864.t1 MTR_1g019130 40.449 89 43 1 15 103 72 150 1.17e-13 70.5
MS.gene26864.t1 MTR_3g115620 33.010 103 62 1 41 143 80 175 6.12e-13 68.2
MS.gene26864.t1 MTR_7g060630 43.333 60 34 0 43 102 8 67 2.25e-12 66.2
MS.gene26864.t1 MTR_1g115315 41.270 63 37 0 40 102 82 144 1.11e-11 65.1
MS.gene26864.t1 MTR_1g115315 41.270 63 37 0 40 102 82 144 1.23e-11 65.1
MS.gene26864.t1 MTR_0777s0020 47.191 89 44 2 76 163 50 136 7.21e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26864.t1 AT5G45980 47.244 127 51 2 9 119 8 134 3.64e-30 119
MS.gene26864.t1 AT3G03660 47.872 94 39 2 1 94 1 84 7.11e-20 89.0
MS.gene26864.t1 AT5G17810 66.667 54 18 0 41 94 19 72 1.22e-19 88.6
MS.gene26864.t1 AT3G03660 47.872 94 39 2 1 94 1 84 1.23e-19 89.0
MS.gene26864.t1 AT5G17810 66.667 54 18 0 41 94 19 72 1.33e-19 88.2
MS.gene26864.t1 AT5G17810 66.667 54 18 0 41 94 19 72 1.33e-19 88.2
MS.gene26864.t1 AT3G03660 47.872 94 39 2 1 94 1 84 2.00e-19 88.2
MS.gene26864.t1 AT3G03660 47.872 94 39 2 1 94 1 84 3.43e-19 88.2
MS.gene26864.t1 AT3G18010 47.541 61 32 0 43 103 76 136 4.84e-15 76.3
MS.gene26864.t1 AT1G46480 47.826 69 35 1 35 103 83 150 1.82e-14 72.0
MS.gene26864.t1 AT5G59340 26.667 180 122 4 43 216 14 189 3.36e-14 72.4
MS.gene26864.t1 AT3G11260 44.262 61 34 0 43 103 24 84 6.39e-14 70.1
MS.gene26864.t1 AT1G46480 47.826 69 35 1 35 103 83 150 8.28e-14 71.2
MS.gene26864.t1 AT5G05770 43.333 60 34 0 43 102 29 88 1.05e-13 67.8
MS.gene26864.t1 AT2G17950 50.000 62 30 1 43 103 38 99 1.25e-13 71.2
MS.gene26864.t1 AT2G01500 49.091 55 28 0 43 97 61 115 4.64e-13 69.3
MS.gene26864.t1 AT2G33880 45.205 73 36 1 327 399 309 377 5.20e-13 70.5
MS.gene26864.t1 AT2G33880 45.205 73 36 1 327 399 309 377 6.97e-13 70.1
MS.gene26864.t1 AT2G28610 42.424 66 38 0 37 102 2 67 1.98e-12 67.0
MS.gene26864.t1 AT4G35550 42.857 63 36 0 41 103 97 159 3.72e-12 66.6
MS.gene26864.t1 AT1G20700 41.270 63 37 0 41 103 31 93 8.24e-12 63.2
MS.gene26864.t1 AT1G20700 36.486 74 47 0 30 103 82 155 9.25e-12 64.7
MS.gene26864.t1 AT1G20700 36.486 74 47 0 30 103 82 155 1.13e-11 63.9

Find 99 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAACAATTAGAAGAATT+TGG 0.130042 4.1:-22298034 MS.gene26864:CDS
CAAGACCCGCAATTTAATTT+TGG 0.177107 4.1:-22297398 MS.gene26864:CDS
TTAGAAGAATTTGGGAAAAT+TGG 0.179693 4.1:-22298025 MS.gene26864:CDS
CCATTGAGAAAGAGGAAAAT+AGG 0.245649 4.1:+22297660 None:intergenic
AATAAGTATCATCTTGCTTT+TGG 0.259990 4.1:+22297723 None:intergenic
AAAGGATTCACGAACGTTAA+AGG 0.277504 4.1:+22297003 None:intergenic
ATGCGGATTTGCTCAGGCTT+TGG 0.283372 4.1:+22298118 None:intergenic
ATGAACAATGAAAATGAAAA+TGG 0.285973 4.1:-22297497 MS.gene26864:CDS
CACTCTCCCATCATTAATAT+TGG 0.292661 4.1:+22297778 None:intergenic
GCCTGAGCAAATCCGCATTC+TGG 0.308743 4.1:-22298113 MS.gene26864:CDS
TGCGGATTTGCTCAGGCTTT+GGG 0.308960 4.1:+22298119 None:intergenic
TCAGGCTTTGGGTTCCATCT+TGG 0.322968 4.1:+22298130 None:intergenic
TTTCACTGGGAGAGGCTCTT+TGG 0.326910 4.1:+22297828 None:intergenic
GAAGTTGATCATCAGTAAAA+AGG 0.326950 4.1:+22297282 None:intergenic
TTTGGGTTCCATCTTGGCCT+TGG 0.327019 4.1:+22298136 None:intergenic
ATCACAATATCTAACAATAT+TGG 0.329123 4.1:-22297806 MS.gene26864:CDS
GGAGAGATTGTGGATGAATT+AGG 0.338412 4.1:+22297749 None:intergenic
GGTGGTGGTGGTGGGATTTG+TGG 0.341213 4.1:+22297881 None:intergenic
GTGGTGGTGGTGGGATTTGT+GGG 0.343259 4.1:+22297882 None:intergenic
GGTGAGGGTTCAATCATATT+CGG 0.354951 4.1:+22297563 None:intergenic
ATTTGTGGGAGAGAGTTATT+AGG 0.358733 4.1:+22297896 None:intergenic
GTGAACAATTAGAAGAATTT+GGG 0.359582 4.1:-22298033 MS.gene26864:CDS
TTCCATCTTGGCCTTGGTCC+AGG 0.361114 4.1:+22298142 None:intergenic
TGGTTGGAGTTCGACGAATT+TGG 0.370437 4.1:+22298760 None:intergenic
GATGGATTAGGTGGTGGTGG+TGG 0.376558 4.1:+22297872 None:intergenic
AGAGGCTCTTTGGTGATTAG+AGG 0.377467 4.1:+22297838 None:intergenic
TTTACTGATGATCAACTTCA+AGG 0.378920 4.1:-22297278 MS.gene26864:intron
AATTAAATTGCGGGTCTTGT+TGG 0.379122 4.1:+22297402 None:intergenic
CTGGAAGCAATCTACAACTC+AGG 0.386585 4.1:-22298094 MS.gene26864:CDS
GAAGATGATGAAGATGGATT+AGG 0.391757 4.1:+22297860 None:intergenic
TGACACCAAAATTAAATTGC+GGG 0.395460 4.1:+22297393 None:intergenic
CCCCATTCATCGGTTAGAAC+CGG 0.398111 4.1:+22296944 None:intergenic
CCCGGTTCTAACCGATGAAT+GGG 0.399463 4.1:-22296945 MS.gene26864:CDS
GTTGTAGATCGGTTTCAGTT+GGG 0.400667 4.1:+22297693 None:intergenic
GATAATGAAGAAAGAAATCC+TGG 0.405944 4.1:-22298160 MS.gene26864:CDS
CATTGAGAAAGAGGAAAATA+GGG 0.407191 4.1:+22297661 None:intergenic
GTGCATGTGCATCATATTCA+TGG 0.415898 4.1:+22297424 None:intergenic
TTAGGAGCTGGATCTGCAAT+TGG 0.417412 4.1:+22297914 None:intergenic
TCCAGAATGCGGATTTGCTC+AGG 0.421812 4.1:+22298112 None:intergenic
GTTAGATATTGTGATTTCAC+TGG 0.434652 4.1:+22297814 None:intergenic
TTTAACGTTCGTGAATCCTT+TGG 0.434959 4.1:-22297001 MS.gene26864:CDS
ATGATTCTCCATTGAGAAAG+AGG 0.435482 4.1:+22297652 None:intergenic
GGAATCTCCAATATTAATGA+TGG 0.437319 4.1:-22297785 MS.gene26864:CDS
GTGAGGGTTCAATCATATTC+GGG 0.442014 4.1:+22297564 None:intergenic
AAGGATTCACGAACGTTAAA+GGG 0.443421 4.1:+22297004 None:intergenic
ATCTTCTTGATTTCATCTAC+AGG 0.443482 4.1:+22298058 None:intergenic
CCCCGGTTCTAACCGATGAA+TGG 0.455370 4.1:-22296946 MS.gene26864:CDS
AGTTGTAGATCGGTTTCAGT+TGG 0.468112 4.1:+22297692 None:intergenic
CCCATTCATCGGTTAGAACC+GGG 0.470305 4.1:+22296945 None:intergenic
ATGGATTAGGTGGTGGTGGT+GGG 0.472541 4.1:+22297873 None:intergenic
ATGTCAATGGCCGGAGGTAG+AGG 0.473475 4.1:+22297329 None:intergenic
GGTGACTTTATAAACTTGCT+TGG 0.474802 4.1:+22298781 None:intergenic
ATGGAGAATCATGTTAATGA+AGG 0.479722 4.1:-22297641 MS.gene26864:CDS
TTGTAGATCGGTTTCAGTTG+GGG 0.501118 4.1:+22297694 None:intergenic
GAAGATGGATTAGGTGGTGG+TGG 0.501572 4.1:+22297869 None:intergenic
TATTGTGATTTCACTGGGAG+AGG 0.511945 4.1:+22297820 None:intergenic
GGGAGAGAGTTATTAGGAGC+TGG 0.513692 4.1:+22297902 None:intergenic
ATCCTGGACCAAGGCCAAGA+TGG 0.528279 4.1:-22298144 MS.gene26864:CDS
GGTGCACTCATGTCAATGGC+CGG 0.541661 4.1:+22297320 None:intergenic
AGCAGGTGCACTCATGTCAA+TGG 0.543766 4.1:+22297316 None:intergenic
GTTAACCTCGATTACTTCGT+TGG 0.544175 4.1:+22297033 None:intergenic
AAAAGGAATGGAATATCAGC+AGG 0.549420 4.1:+22297299 None:intergenic
TCCATGGTAGAGTGAGTTGA+GGG 0.553586 4.1:+22296916 None:intergenic
TTCTTGATTTCATCTACAGG+TGG 0.556034 4.1:+22298061 None:intergenic
GAGGGTGACACCCCATTCAT+CGG 0.558082 4.1:+22296934 None:intergenic
TGGAGAATCATGTTAATGAA+GGG 0.558945 4.1:-22297640 MS.gene26864:CDS
TGATCAAGTGAATGTTCAAG+AGG 0.560823 4.1:-22297450 MS.gene26864:CDS
GTTTGACTCCTTCTGTACCC+CGG 0.561060 4.1:-22296963 MS.gene26864:CDS
TTAGAGGAAGATGATGAAGA+TGG 0.564984 4.1:+22297854 None:intergenic
AACCATCAAAATCGTCTGCA+TGG 0.567329 4.1:-22298742 MS.gene26864:intron
GAATCTCCAATATTAATGAT+GGG 0.575519 4.1:-22297784 MS.gene26864:CDS
GGTTAGAACCGGGGTACAGA+AGG 0.581477 4.1:+22296955 None:intergenic
TTAGATATTGTGATTTCACT+GGG 0.581998 4.1:+22297815 None:intergenic
CTCCATGGTAGAGTGAGTTG+AGG 0.583077 4.1:+22296915 None:intergenic
TGATCTTGCTCCTCTACCTC+CGG 0.584790 4.1:-22297339 MS.gene26864:CDS
GTGACACCAAAATTAAATTG+CGG 0.589142 4.1:+22297392 None:intergenic
TGGAAGCAATCTACAACTCA+GGG 0.590445 4.1:-22298093 MS.gene26864:CDS
ATGTTATCATAATTAAGCAC+AGG 0.594226 4.1:+22297521 None:intergenic
TTTCAAAACCGCAAGTCCAA+AGG 0.599228 4.1:-22297980 MS.gene26864:CDS
CCACGTAATAATCAGCTCCA+TGG 0.601206 4.1:+22296900 None:intergenic
TGTAGATTGCTTCCAGAATG+CGG 0.605667 4.1:+22298101 None:intergenic
GAAGTAATCGAGGTTAACGC+AGG 0.607642 4.1:-22297028 MS.gene26864:CDS
TACTGCCAACGAAGTAATCG+AGG 0.608047 4.1:-22297038 MS.gene26864:CDS
GGAGAATCATGTTAATGAAG+GGG 0.615858 4.1:-22297639 MS.gene26864:CDS
CAGAACTGCTCTATTACCAA+AGG 0.619722 4.1:+22296985 None:intergenic
AATGACATGACAACACTAGA+GGG 0.631034 4.1:-22297608 MS.gene26864:CDS
GATGATGAAGATGGATTAGG+TGG 0.643509 4.1:+22297863 None:intergenic
ACCCTCAACTCACTCTACCA+TGG 0.647606 4.1:-22296917 MS.gene26864:CDS
TAATGACATGACAACACTAG+AGG 0.647700 4.1:-22297609 MS.gene26864:CDS
GATGAAGATGGATTAGGTGG+TGG 0.649565 4.1:+22297866 None:intergenic
CTCGTAAGAAGAAAGTACAT+TGG 0.652355 4.1:-22298804 MS.gene26864:CDS
AAGAAAGAAATCCTGGACCA+AGG 0.658709 4.1:-22298153 MS.gene26864:CDS
CCATGGAGCTGATTATTACG+TGG 0.665604 4.1:-22296900 MS.gene26864:intron
AAGTAATCGAGGTTAACGCA+GGG 0.673390 4.1:-22297027 MS.gene26864:CDS
ATGACATGACAACACTAGAG+GGG 0.676653 4.1:-22297607 MS.gene26864:CDS
TATTAATGATGGGAGAGTGT+TGG 0.676983 4.1:-22297774 MS.gene26864:CDS
CCGGTTCTAACCGATGAATG+GGG 0.682846 4.1:-22296944 MS.gene26864:CDS
CCATTCATCGGTTAGAACCG+GGG 0.687831 4.1:+22296946 None:intergenic
GCACTCATGTCAATGGCCGG+AGG 0.689498 4.1:+22297323 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATAATAATAAAATAA+TGG - chr4.1:22298482-22298501 MS.gene26864:intron 0.0%
!! AAAAATTTACTAAAAAAAAG+AGG - chr4.1:22298556-22298575 MS.gene26864:intron 10.0%
!! TAATAATAATAAAAAGTAGA+AGG + chr4.1:22296249-22296268 None:intergenic 10.0%
!!! ATTTCTAAAACTATTTTTTA+TGG + chr4.1:22296641-22296660 None:intergenic 10.0%
!!! CTTTTTACTAAAAAAATTAA+AGG + chr4.1:22298456-22298475 None:intergenic 10.0%
!!! TTATTTTTCATATATAACTA+TGG - chr4.1:22298709-22298728 MS.gene26864:intron 10.0%
!!! TTTCTAAAACTATTTTTTAT+GGG + chr4.1:22296640-22296659 None:intergenic 10.0%
!! AATTACAAATATAGATGATT+TGG - chr4.1:22298171-22298190 MS.gene26864:intron 15.0%
!! TATATAACTATGGATTTAAT+TGG - chr4.1:22298719-22298738 MS.gene26864:intron 15.0%
!!! ATTTTTTTAAAGCTAAGATT+AGG + chr4.1:22296494-22296513 None:intergenic 15.0%
!!! TTATTTTGAAAATTACGTAT+AGG - chr4.1:22298803-22298822 MS.gene26864:CDS 15.0%
!! AAAAAATATTTACACCCATA+AGG + chr4.1:22298749-22298768 None:intergenic 20.0%
!! ATCACAATATCTAACAATAT+TGG - chr4.1:22297122-22297141 MS.gene26864:intron 20.0%
!! ATGAACAATGAAAATGAAAA+TGG - chr4.1:22297431-22297450 MS.gene26864:CDS 20.0%
!! ATTACCTAATCAAAATGATT+TGG + chr4.1:22298328-22298347 None:intergenic 20.0%
!! ATTTAATTGGTATACCTTAT+GGG - chr4.1:22298732-22298751 MS.gene26864:intron 20.0%
!! GCTTATAACAAATATTGTTT+AGG - chr4.1:22296741-22296760 MS.gene26864:intron 20.0%
!! TATAACAAATATTGTTTAGG+TGG - chr4.1:22296744-22296763 MS.gene26864:intron 20.0%
!! TTACCTAATCAAAATGATTT+GGG + chr4.1:22298327-22298346 None:intergenic 20.0%
!! TTTATAAGGGAAAATGATTT+GGG + chr4.1:22298294-22298313 None:intergenic 20.0%
!! TTTGATTAGGTAATGATATT+TGG - chr4.1:22298334-22298353 MS.gene26864:intron 20.0%
!!! AAGATCAAATAGTAGATTTT+AGG + chr4.1:22296524-22296543 None:intergenic 20.0%
!!! AATTAGTGTTGAAGAATTAA+TGG + chr4.1:22298363-22298382 None:intergenic 20.0%
!!! GGGAACTTTTTTTTTTATAA+GGG + chr4.1:22298307-22298326 None:intergenic 20.0%
!!! TGGGAACTTTTTTTTTTATA+AGG + chr4.1:22298308-22298327 None:intergenic 20.0%
!!! TTAGTTTTTTTTCCATGTTA+GGG - chr4.1:22296416-22296435 MS.gene26864:intron 20.0%
!!! TTTAGTTTTTTTTCCATGTT+AGG - chr4.1:22296415-22296434 MS.gene26864:intron 20.0%
!!! TTTTATAAGGGAAAATGATT+TGG + chr4.1:22298295-22298314 None:intergenic 20.0%
! AAATAGAGAGATCAATAATG+TGG + chr4.1:22298646-22298665 None:intergenic 25.0%
! ATGTTATCATAATTAAGCAC+AGG + chr4.1:22297410-22297429 None:intergenic 25.0%
! GAATCTCCAATATTAATGAT+GGG - chr4.1:22297144-22297163 MS.gene26864:intron 25.0%
! GATTTAATTGGTATACCTTA+TGG - chr4.1:22298731-22298750 MS.gene26864:intron 25.0%
! GTGAACAATTAGAAGAATTT+GGG - chr4.1:22296895-22296914 MS.gene26864:intron 25.0%
! TTAGAAGAATTTGGGAAAAT+TGG - chr4.1:22296903-22296922 MS.gene26864:CDS 25.0%
! TTAGATATTGTGATTTCACT+GGG + chr4.1:22297116-22297135 None:intergenic 25.0%
!! AATAAGTATCATCTTGCTTT+TGG + chr4.1:22297208-22297227 None:intergenic 25.0%
!! TAATTTGTACGTGTCTAATA+TGG - chr4.1:22298404-22298423 MS.gene26864:intron 25.0%
!! TACTATTTGATCTTTTCCAA+TGG - chr4.1:22296530-22296549 MS.gene26864:intron 25.0%
!! TATAACGATTAGTTGATGTT+TGG - chr4.1:22297820-22297839 MS.gene26864:CDS 25.0%
!!! CATCTTTTGATCATTTTTAG+AGG + chr4.1:22298431-22298450 None:intergenic 25.0%
!!! TAGTTTTTTTTCCATGTTAG+GGG - chr4.1:22296417-22296436 MS.gene26864:intron 25.0%
!!! TCGATATAATTTGTTTCGAT+TGG + chr4.1:22296395-22296414 None:intergenic 25.0%
AAAAAGTAGAAGGAGTTGTT+TGG + chr4.1:22296239-22296258 None:intergenic 30.0%
ATCTTCTTGATTTCATCTAC+AGG + chr4.1:22296873-22296892 None:intergenic 30.0%
ATGGAGAATCATGTTAATGA+AGG - chr4.1:22297287-22297306 MS.gene26864:CDS 30.0%
CACTTGATCAAAAAGATCAT+TGG + chr4.1:22297468-22297487 None:intergenic 30.0%
CATTGAGAAAGAGGAAAATA+GGG + chr4.1:22297270-22297289 None:intergenic 30.0%
CGTGAACAATTAGAAGAATT+TGG - chr4.1:22296894-22296913 MS.gene26864:intron 30.0%
CTAATATAGATCAAGTCCAA+TGG + chr4.1:22298587-22298606 None:intergenic 30.0%
GATAATGAAGAAAGAAATCC+TGG - chr4.1:22296768-22296787 MS.gene26864:intron 30.0%
GGAATCTCCAATATTAATGA+TGG - chr4.1:22297143-22297162 MS.gene26864:intron 30.0%
GTAAACTTTGCATGTTTGAT+CGG - chr4.1:22296719-22296738 MS.gene26864:intron 30.0%
GTGACACCAAAATTAAATTG+CGG + chr4.1:22297539-22297558 None:intergenic 30.0%
GTTAGATATTGTGATTTCAC+TGG + chr4.1:22297117-22297136 None:intergenic 30.0%
TACTAGAGATCATGTTTGTT+TGG + chr4.1:22296461-22296480 None:intergenic 30.0%
TGACACCAAAATTAAATTGC+GGG + chr4.1:22297538-22297557 None:intergenic 30.0%
TGATCATCAGTAAAAAGGAA+TGG + chr4.1:22297644-22297663 None:intergenic 30.0%
TGGAGAATCATGTTAATGAA+GGG - chr4.1:22297288-22297307 MS.gene26864:CDS 30.0%
TTAGGATTTCAATGCAAGTA+AGG - chr4.1:22296582-22296601 MS.gene26864:intron 30.0%
TTGCTTGAATGTGTGAATTT+AGG + chr4.1:22296611-22296630 None:intergenic 30.0%
TTTACTGATGATCAACTTCA+AGG - chr4.1:22297650-22297669 MS.gene26864:CDS 30.0%
! AAAGAGGAAAATAGGGTTTT+AGG + chr4.1:22297263-22297282 None:intergenic 30.0%
! GAAGTTGATCATCAGTAAAA+AGG + chr4.1:22297649-22297668 None:intergenic 30.0%
!!! GGTTGTCTTTTTGATTTCTT+GGG + chr4.1:22296996-22297015 None:intergenic 30.0%
!!! GTTCCCAAATCATTTTGATT+AGG - chr4.1:22298321-22298340 MS.gene26864:intron 30.0%
!!! GTTGTCTTTTTGATTTCTTG+GGG + chr4.1:22296995-22297014 None:intergenic 30.0%
!!! TGCTTTTTTGTTTTTGCCTT+TGG + chr4.1:22296967-22296986 None:intergenic 30.0%
!!! TGGTTGTCTTTTTGATTTCT+TGG + chr4.1:22296997-22297016 None:intergenic 30.0%
!!! TTAGTTGATGTTTGGTTTTC+AGG - chr4.1:22297828-22297847 MS.gene26864:CDS 30.0%
AAAAAAAGAGGATCCACCAT+TGG - chr4.1:22298568-22298587 MS.gene26864:intron 35.0%
AAAAGGAATGGAATATCAGC+AGG + chr4.1:22297632-22297651 None:intergenic 35.0%
AAAGGATTCACGAACGTTAA+AGG + chr4.1:22297928-22297947 None:intergenic 35.0%
AAGGATTCACGAACGTTAAA+GGG + chr4.1:22297927-22297946 None:intergenic 35.0%
AATGACATGACAACACTAGA+GGG - chr4.1:22297320-22297339 MS.gene26864:CDS 35.0%
ACCCAAAATTTCAAGCACAA+GGG - chr4.1:22297706-22297725 MS.gene26864:CDS 35.0%
ATATAGATCAAGTCCAATGG+TGG + chr4.1:22298584-22298603 None:intergenic 35.0%
ATGATTCTCCATTGAGAAAG+AGG + chr4.1:22297279-22297298 None:intergenic 35.0%
ATTTGTGGGAGAGAGTTATT+AGG + chr4.1:22297035-22297054 None:intergenic 35.0%
CACTCTCCCATCATTAATAT+TGG + chr4.1:22297153-22297172 None:intergenic 35.0%
CCATTGAGAAAGAGGAAAAT+AGG + chr4.1:22297271-22297290 None:intergenic 35.0%
GGAGAATCATGTTAATGAAG+GGG - chr4.1:22297289-22297308 MS.gene26864:CDS 35.0%
GGTAAATAGTGTGAAGTGAT+AGG + chr4.1:22298625-22298644 None:intergenic 35.0%
TAATGACATGACAACACTAG+AGG - chr4.1:22297319-22297338 MS.gene26864:CDS 35.0%
TGATCAAGTGAATGTTCAAG+AGG - chr4.1:22297478-22297497 MS.gene26864:CDS 35.0%
TGTGAAGTGATAGGAAAAGA+GGG + chr4.1:22298616-22298635 None:intergenic 35.0%
TGTTTATATGTCCCCTAACA+TGG + chr4.1:22296431-22296450 None:intergenic 35.0%
TTAGAGGAAGATGATGAAGA+TGG + chr4.1:22297077-22297096 None:intergenic 35.0%
TTCTTGATTTCATCTACAGG+TGG + chr4.1:22296870-22296889 None:intergenic 35.0%
TTGCTTGACGGTGTAAATTT+AGG - chr4.1:22296564-22296583 MS.gene26864:intron 35.0%
TTTAACGTTCGTGAATCCTT+TGG - chr4.1:22297927-22297946 MS.gene26864:CDS 35.0%
TTTACACCGTCAAGCAAATA+TGG + chr4.1:22296561-22296580 None:intergenic 35.0%
! AATTAAATTGCGGGTCTTGT+TGG + chr4.1:22297529-22297548 None:intergenic 35.0%
! ACCCTTGTGCTTGAAATTTT+GGG + chr4.1:22297710-22297729 None:intergenic 35.0%
! ATCAACATTTTGTTGAGGTG+AGG + chr4.1:22297384-22297403 None:intergenic 35.0%
! CCTATTTTCCTCTTTCTCAA+TGG - chr4.1:22297268-22297287 MS.gene26864:intron 35.0%
! CTCGTAAGAAGAAAGTACAT+TGG - chr4.1:22296124-22296143 MS.gene26864:intron 35.0%
! GAAGATGATGAAGATGGATT+AGG + chr4.1:22297071-22297090 None:intergenic 35.0%
! GGAAGATCAACATTTTGTTG+AGG + chr4.1:22297389-22297408 None:intergenic 35.0%
! GGTGACTTTATAAACTTGCT+TGG + chr4.1:22296150-22296169 None:intergenic 35.0%
! TACCCTTGTGCTTGAAATTT+TGG + chr4.1:22297711-22297730 None:intergenic 35.0%
! TATTAATGATGGGAGAGTGT+TGG - chr4.1:22297154-22297173 MS.gene26864:intron 35.0%
! TCAACATTTTGTTGAGGTGA+GGG + chr4.1:22297383-22297402 None:intergenic 35.0%
!! CAAGACCCGCAATTTAATTT+TGG - chr4.1:22297530-22297549 MS.gene26864:CDS 35.0%
!! GTATCATCTTGCTTTTGGTT+CGG + chr4.1:22297203-22297222 None:intergenic 35.0%
!!! CTTTTTGATTTCTTGGGGTA+GGG + chr4.1:22296990-22297009 None:intergenic 35.0%
!!! GATGTTTGGTTTTCAGGTTT+TGG - chr4.1:22297834-22297853 MS.gene26864:CDS 35.0%
!!! GGTTTTAGGTAGTTGTAGAT+CGG + chr4.1:22297249-22297268 None:intergenic 35.0%
!!! TCTTTTTGATTTCTTGGGGT+AGG + chr4.1:22296991-22297010 None:intergenic 35.0%
AACCATCAAAATCGTCTGCA+TGG - chr4.1:22296186-22296205 MS.gene26864:intron 40.0%
AAGAAAGAAATCCTGGACCA+AGG - chr4.1:22296775-22296794 MS.gene26864:intron 40.0%
AAGTAATCGAGGTTAACGCA+GGG - chr4.1:22297901-22297920 MS.gene26864:CDS 40.0%
AGCAAATATGGTCAGACCAT+TGG + chr4.1:22296549-22296568 None:intergenic 40.0%
ATGACATGACAACACTAGAG+GGG - chr4.1:22297321-22297340 MS.gene26864:CDS 40.0%
CACCCAAAATTTCAAGCACA+AGG - chr4.1:22297705-22297724 MS.gene26864:CDS 40.0%
CAGAACTGCTCTATTACCAA+AGG + chr4.1:22297946-22297965 None:intergenic 40.0%
GGAGAGATTGTGGATGAATT+AGG + chr4.1:22297182-22297201 None:intergenic 40.0%
GGTGAGGGTTCAATCATATT+CGG + chr4.1:22297368-22297387 None:intergenic 40.0%
GTCTGACCATATTTGCTTGA+CGG - chr4.1:22296552-22296571 MS.gene26864:intron 40.0%
GTGAAGTGATAGGAAAAGAG+GGG + chr4.1:22298615-22298634 None:intergenic 40.0%
GTGAGGGTTCAATCATATTC+GGG + chr4.1:22297367-22297386 None:intergenic 40.0%
GTGCATGTGCATCATATTCA+TGG + chr4.1:22297507-22297526 None:intergenic 40.0%
GTGTGAAGTGATAGGAAAAG+AGG + chr4.1:22298617-22298636 None:intergenic 40.0%
GTTAACCTCGATTACTTCGT+TGG + chr4.1:22297898-22297917 None:intergenic 40.0%
TATTGTGATTTCACTGGGAG+AGG + chr4.1:22297111-22297130 None:intergenic 40.0%
TGAAGTGATAGGAAAAGAGG+GGG + chr4.1:22298614-22298633 None:intergenic 40.0%
TGAGTGAACAACAGTTGCTT+AGG - chr4.1:22298145-22298164 MS.gene26864:CDS 40.0%
TGGAAGCAATCTACAACTCA+GGG - chr4.1:22296835-22296854 MS.gene26864:intron 40.0%
TGTAGATTGCTTCCAGAATG+CGG + chr4.1:22296830-22296849 None:intergenic 40.0%
TTTCAAAACCGCAAGTCCAA+AGG - chr4.1:22296948-22296967 MS.gene26864:CDS 40.0%
! AGTTGTAGATCGGTTTCAGT+TGG + chr4.1:22297239-22297258 None:intergenic 40.0%
! GTGATTCGAGTGTCTTTTAC+TGG - chr4.1:22296925-22296944 MS.gene26864:CDS 40.0%
! GTTGTAGATCGGTTTCAGTT+GGG + chr4.1:22297238-22297257 None:intergenic 40.0%
! TACCATGCAGACGATTTTGA+TGG + chr4.1:22296191-22296210 None:intergenic 40.0%
! TTGTAGATCGGTTTCAGTTG+GGG + chr4.1:22297237-22297256 None:intergenic 40.0%
!! ATGCAGACGATTTTGATGGT+TGG + chr4.1:22296187-22296206 None:intergenic 40.0%
!! GATGATGAAGATGGATTAGG+TGG + chr4.1:22297068-22297087 None:intergenic 40.0%
!! TGTTTTTGCCTTTGGACTTG+CGG + chr4.1:22296959-22296978 None:intergenic 40.0%
!!! TTGGTTTTCAGGTTTTGGTG+AGG - chr4.1:22297839-22297858 MS.gene26864:CDS 40.0%
AGACCATTGAAGAGAGAGGA+GGG + chr4.1:22296216-22296235 None:intergenic 45.0%
ATAGACGTGTGCAATGTGCA+TGG - chr4.1:22297752-22297771 MS.gene26864:CDS 45.0%
ATGCACATTGCACACGTCTA+TGG + chr4.1:22297753-22297772 None:intergenic 45.0%
CCACGTAATAATCAGCTCCA+TGG + chr4.1:22298031-22298050 None:intergenic 45.0%
CCATGGAGCTGATTATTACG+TGG - chr4.1:22298028-22298047 MS.gene26864:CDS 45.0%
CTGGAAGCAATCTACAACTC+AGG - chr4.1:22296834-22296853 MS.gene26864:intron 45.0%
GAAGTAATCGAGGTTAACGC+AGG - chr4.1:22297900-22297919 MS.gene26864:CDS 45.0%
TACTGCCAACGAAGTAATCG+AGG - chr4.1:22297890-22297909 MS.gene26864:CDS 45.0%
TGCACATTGCACACGTCTAT+GGG + chr4.1:22297752-22297771 None:intergenic 45.0%
TGGTTGGAGTTCGACGAATT+TGG + chr4.1:22296171-22296190 None:intergenic 45.0%
TTAGGAGCTGGATCTGCAAT+TGG + chr4.1:22297017-22297036 None:intergenic 45.0%
TTGGAGACCATTGAAGAGAG+AGG + chr4.1:22296220-22296239 None:intergenic 45.0%
! AGAGGCTCTTTGGTGATTAG+AGG + chr4.1:22297093-22297112 None:intergenic 45.0%
! TCCATGGTAGAGTGAGTTGA+GGG + chr4.1:22298015-22298034 None:intergenic 45.0%
!! GATGAAGATGGATTAGGTGG+TGG + chr4.1:22297065-22297084 None:intergenic 45.0%
!! TCAGGTTTTGGTGAGGAAGA+TGG - chr4.1:22297846-22297865 MS.gene26864:CDS 45.0%
!!! CTTTTGGTTCGGAGAGATTG+TGG + chr4.1:22297192-22297211 None:intergenic 45.0%
AACCCCTCCTCTCTCTTCAA+TGG - chr4.1:22296210-22296229 MS.gene26864:intron 50.0%
ACCCTCAACTCACTCTACCA+TGG - chr4.1:22298011-22298030 MS.gene26864:CDS 50.0%
AGCAGGTGCACTCATGTCAA+TGG + chr4.1:22297615-22297634 None:intergenic 50.0%
CTCCATGGTAGAGTGAGTTG+AGG + chr4.1:22298016-22298035 None:intergenic 50.0%
GACCATTGAAGAGAGAGGAG+GGG + chr4.1:22296215-22296234 None:intergenic 50.0%
GAGACCATTGAAGAGAGAGG+AGG + chr4.1:22296217-22296236 None:intergenic 50.0%
GGGAGAGAGTTATTAGGAGC+TGG + chr4.1:22297029-22297048 None:intergenic 50.0%
GTTTGACTCCTTCTGTACCC+CGG - chr4.1:22297965-22297984 MS.gene26864:CDS 50.0%
TGATCTTGCTCCTCTACCTC+CGG - chr4.1:22297589-22297608 MS.gene26864:CDS 50.0%
TTTCACTGGGAGAGGCTCTT+TGG + chr4.1:22297103-22297122 None:intergenic 50.0%
! ATGCGGATTTGCTCAGGCTT+TGG + chr4.1:22296813-22296832 None:intergenic 50.0%
! CCATTCATCGGTTAGAACCG+GGG + chr4.1:22297985-22298004 None:intergenic 50.0%
! CCCATTCATCGGTTAGAACC+GGG + chr4.1:22297986-22298005 None:intergenic 50.0%
! CCCCATTCATCGGTTAGAAC+CGG + chr4.1:22297987-22298006 None:intergenic 50.0%
! CCCGGTTCTAACCGATGAAT+GGG - chr4.1:22297983-22298002 MS.gene26864:CDS 50.0%
! CCGGTTCTAACCGATGAATG+GGG - chr4.1:22297984-22298003 MS.gene26864:CDS 50.0%
! TCCAGAATGCGGATTTGCTC+AGG + chr4.1:22296819-22296838 None:intergenic 50.0%
! TGCGGATTTGCTCAGGCTTT+GGG + chr4.1:22296812-22296831 None:intergenic 50.0%
! TTTGGGTTCCATCTTGGCCT+TGG + chr4.1:22296795-22296814 None:intergenic 50.0%
!! ATGGATTAGGTGGTGGTGGT+GGG + chr4.1:22297058-22297077 None:intergenic 50.0%
!! GAAGATGGATTAGGTGGTGG+TGG + chr4.1:22297062-22297081 None:intergenic 50.0%
!! TCAGGCTTTGGGTTCCATCT+TGG + chr4.1:22296801-22296820 None:intergenic 50.0%
ATCCTGGACCAAGGCCAAGA+TGG - chr4.1:22296784-22296803 MS.gene26864:intron 55.0%
ATGTCAATGGCCGGAGGTAG+AGG + chr4.1:22297602-22297621 None:intergenic 55.0%
GAGGGTGACACCCCATTCAT+CGG + chr4.1:22297997-22298016 None:intergenic 55.0%
GCCTGAGCAAATCCGCATTC+TGG - chr4.1:22296815-22296834 MS.gene26864:intron 55.0%
GGTGCACTCATGTCAATGGC+CGG + chr4.1:22297611-22297630 None:intergenic 55.0%
GGTTAGAACCGGGGTACAGA+AGG + chr4.1:22297976-22297995 None:intergenic 55.0%
! CCCCGGTTCTAACCGATGAA+TGG - chr4.1:22297982-22298001 MS.gene26864:CDS 55.0%
!! GATGGATTAGGTGGTGGTGG+TGG + chr4.1:22297059-22297078 None:intergenic 55.0%
!! GTGGTGGTGGTGGGATTTGT+GGG + chr4.1:22297049-22297068 None:intergenic 55.0%
!! TTCCATCTTGGCCTTGGTCC+AGG + chr4.1:22296789-22296808 None:intergenic 55.0%
GCACTCATGTCAATGGCCGG+AGG + chr4.1:22297608-22297627 None:intergenic 60.0%
!! GGTGGTGGTGGTGGGATTTG+TGG + chr4.1:22297050-22297069 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 22296120 22298830 22296120 ID=MS.gene26864
chr4.1 mRNA 22296120 22298830 22296120 ID=MS.gene26864.t1;Parent=MS.gene26864
chr4.1 exon 22298743 22298830 22298743 ID=MS.gene26864.t1.exon1;Parent=MS.gene26864.t1
chr4.1 CDS 22298743 22298830 22298743 ID=cds.MS.gene26864.t1;Parent=MS.gene26864.t1
chr4.1 exon 22297279 22298187 22297279 ID=MS.gene26864.t1.exon2;Parent=MS.gene26864.t1
chr4.1 CDS 22297279 22298187 22297279 ID=cds.MS.gene26864.t1;Parent=MS.gene26864.t1
chr4.1 exon 22296901 22297100 22296901 ID=MS.gene26864.t1.exon3;Parent=MS.gene26864.t1
chr4.1 CDS 22296901 22297100 22296901 ID=cds.MS.gene26864.t1;Parent=MS.gene26864.t1
chr4.1 exon 22296120 22296125 22296120 ID=MS.gene26864.t1.exon4;Parent=MS.gene26864.t1
chr4.1 CDS 22296120 22296125 22296120 ID=cds.MS.gene26864.t1;Parent=MS.gene26864.t1
Gene Sequence

>MS.gene26864

ATGGCTCGTAAGAAGAAAGTACATTGGCCAAGCAAGTTTATAAAGTCACCAAATTCGTCGAACTCCAACCATCAAAATCGTCTGCATGGTAACCCCTCCTCTCTCTTCAATGGTCTCCAAACAACTCCTTCTACTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTAATCAAACTTACATTTATGTTTGTATGAAAGATCAAAATCAATTACTCTACAAACTCAAAATTCCAATCGAAACAAATTATATCGATTTAGTTTTTTTTCCATGTTAGGGGACATATAAACAAATCAAACCAAACAAACATGATCTCTAGTATTTGATCTTTCCTAATCTTAGCTTTAAAAAAATTAAAAAGCCTAAAATCTACTATTTGATCTTTTCCAATGGTCTGACCATATTTGCTTGACGGTGTAAATTTAGGATTTCAATGCAAGTAAGGATTCCTAAATTCACACATTCAAGCAAATATAACCCATAAAAAATAGTTTTAGAAATATCATAATACTATGCTTCATATAGTGTAATGCATATATTTTGATCAATTTTATAATTTGTAAACTTTGCATGTTTGATCGGCTTATAACAAATATTGTTTAGGTGGAGATAATGAAGAAAGAAATCCTGGACCAAGGCCAAGATGGAACCCAAAGCCTGAGCAAATCCGCATTCTGGAAGCAATCTACAACTCAGGGATGAAGAATCCACCTGTAGATGAAATCAAGAAGATACGTGAACAATTAGAAGAATTTGGGAAAATTGGTGATTCGAGTGTCTTTTACTGGTTTCAAAACCGCAAGTCCAAAGGCAAAAACAAAAAAGCACCCTACCCCAAGAAATCAAAAAGACAACCAATTGCAGATCCAGCTCCTAATAACTCTCTCCCACAAATCCCACCACCACCACCTAATCCATCTTCATCATCTTCCTCTAATCACCAAAGAGCCTCTCCCAGTGAAATCACAATATCTAACAATATTGGAATCTCCAATATTAATGATGGGAGAGTGTTGGTGCCTAATTCATCCACAATCTCTCCGAACCAAAAGCAAGATGATACTTATTCTCACACCCCAACTGAAACCGATCTACAACTACCTAAAACCCTATTTTCCTCTTTCTCAATGGAGAATCATGTTAATGAAGGGGTAGTGCTTAATGACATGACAACACTAGAGGGGTTTAATTACTTCTCTGATTTCCCGAATATGATTGAACCCTCACCTCAACAAAATGTTGATCTTCCTGTGCTTAATTATGATAACATCATGAACAATGAAAATGAAAATGGAATCTGCTCAACCAATGATCTTTTTGATCAAGTGAATGTTCAAGAGGAAGCCATGAATATGATGCACATGCACCAACAAGACCCGCAATTTAATTTTGGTGTCACAACAACATCAAGTAATGATGATCATTCAACTGATCTTGCTCCTCTACCTCCGGCCATTGACATGAGTGCACCTGCTGATATTCCATTCCTTTTTACTGATGATCAACTTCAAGGTAATCAATATCAATTTTTACAATATATATATACACCCAAAATTTCAAGCACAAGGGTATGATTATTTTTTAATTATCCCATAGACGTGTGCAATGTGCATGGCTTAATGTTTTTTTTTTTTTTTTTTTTTGTGAACAACATGTATATTATAACGATTAGTTGATGTTTGGTTTTCAGGTTTTGGTGAGGAAGATGGTCTGAGAAAATGTAGAATTTTTACTGCCAACGAAGTAATCGAGGTTAACGCAGGGCCCTTTAACGTTCGTGAATCCTTTGGTAATAGAGCAGTTCTGTTTGACTCCTTCTGTACCCCGGTTCTAACCGATGAATGGGGTGTCACCCTCAACTCACTCTACCATGGAGCTGATTATTACGTGGTAAAATCAACTTTTTCTTATCTACTACGCTTTGTTCATTAACTATTTTACTAATATATATTATGAGTTGCTTCTTCAAAAAAAAATATATATTATGAGTGAACAACAGTTGCTTAGGCACAATTACAAATATAGATGATTTGGACACGCATAGATCACATACATATCAATTAATCATTTGAAAAATATATATTATTTCGTTCATTCTTCTTTTATCATTTTTCAACTATATGTTTAAGTTCCCAAATCATTTTCCCTTATAAAAAAAAAAGTTCCCAAATCATTTTGATTAGGTAATGATATTTGGACACCATTAATTCTTCAACACTAATTTAATATCTACATATATCTTTTTAATTTGTACGTGTCTAATATGGACCTCTAAAAATGATCAAAAGATGAACCTTTAATTTTTTTAGTAAAAAGAACTGAATTTTATAATAATAAAATAATGGATGACAAACATATAGTTTATAGTTCTTAAAAAAAAAACATAATAGTTTATTAAAAATTTACTAAAAAAAAGAGGATCCACCATTGGACTTGATCTATATTAGACGTCCCCCTCTTTTCCTATCACTTCACACTATTTACCACATTATTGATCTCTCTATTTCTTTCTCTCTCAAAGTCTAGAATGATATTTGTGCGTTCATAGATTATTTTTCATATATAACTATGGATTTAATTGGTATACCTTATGGGTGTAAATATTTTTTTTTACAGATAATTAAAACTGTTAGTTTATTAAAATTATTTTGAAAATTACGTATAGGAATAA

Protein sequence

>MS.gene26864.t1

MARKKKVHWPSKFIKSPNSSNSNHQNRLHGGDNEERNPGPRPRWNPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLEEFGKIGDSSVFYWFQNRKSKGKNKKAPYPKKSKRQPIADPAPNNSLPQIPPPPPNPSSSSSSNHQRASPSEITISNNIGISNINDGRVLVPNSSTISPNQKQDDTYSHTPTETDLQLPKTLFSSFSMENHVNEGVVLNDMTTLEGFNYFSDFPNMIEPSPQQNVDLPVLNYDNIMNNENENGICSTNDLFDQVNVQEEAMNMMHMHQQDPQFNFGVTTTSSNDDHSTDLAPLPPAIDMSAPADIPFLFTDDQLQGFGEEDGLRKCRIFTANEVIEVNAGPFNVRESFGNRAVLFDSFCTPVLTDEWGVTLNSLYHGADYYVE