Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26935.t1 | XP_013466060.1 | 86.7 | 249 | 33 | 0 | 1 | 249 | 1 | 249 | 3.10E-116 | 427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26935.t1 | Q8S307 | 40.0 | 290 | 96 | 8 | 37 | 248 | 46 | 335 | 2.1e-36 | 154.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26935.t1 | A0A072VDJ6 | 86.7 | 249 | 33 | 0 | 1 | 249 | 1 | 249 | 2.3e-116 | 427.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26935.t1 | TF | BES1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26935.t1 | MTR_1g021990 | 90.763 | 249 | 23 | 0 | 1 | 249 | 1 | 249 | 6.80e-169 | 466 |
| MS.gene26935.t1 | MTR_3g111680 | 46.006 | 313 | 103 | 7 | 1 | 247 | 1 | 313 | 2.98e-58 | 187 |
| MS.gene26935.t1 | MTR_2g075410 | 37.931 | 319 | 109 | 13 | 14 | 246 | 6 | 321 | 4.35e-25 | 101 |
| MS.gene26935.t1 | MTR_5g019550 | 43.842 | 203 | 68 | 4 | 14 | 175 | 9 | 206 | 1.10e-24 | 100 |
| MS.gene26935.t1 | MTR_2g075400 | 36.656 | 311 | 117 | 10 | 14 | 246 | 6 | 314 | 8.72e-24 | 99.8 |
| MS.gene26935.t1 | MTR_5g026210 | 54.545 | 55 | 25 | 0 | 26 | 80 | 62 | 116 | 2.34e-11 | 63.5 |
| MS.gene26935.t1 | MTR_5g026210 | 54.545 | 55 | 25 | 0 | 26 | 80 | 62 | 116 | 2.46e-11 | 63.5 |
| MS.gene26935.t1 | MTR_5g026210 | 53.226 | 62 | 28 | 1 | 26 | 87 | 62 | 122 | 2.58e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26935.t1 | AT1G75080 | 45.541 | 314 | 93 | 8 | 13 | 248 | 22 | 335 | 4.20e-63 | 201 |
| MS.gene26935.t1 | AT1G75080 | 45.541 | 314 | 93 | 8 | 13 | 248 | 22 | 335 | 4.20e-63 | 201 |
| MS.gene26935.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 43 | 355 | 1.12e-60 | 195 |
| MS.gene26935.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 21 | 333 | 1.61e-60 | 194 |
| MS.gene26935.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 21 | 333 | 1.61e-60 | 194 |
| MS.gene26935.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 21 | 333 | 1.61e-60 | 194 |
| MS.gene26935.t1 | AT1G19350 | 44.089 | 313 | 97 | 8 | 13 | 247 | 21 | 333 | 1.61e-60 | 194 |
| MS.gene26935.t1 | AT3G50750 | 40.559 | 286 | 110 | 9 | 1 | 243 | 1 | 269 | 6.40e-34 | 124 |
| MS.gene26935.t1 | AT4G36780 | 50.000 | 164 | 46 | 2 | 14 | 141 | 16 | 179 | 4.91e-33 | 121 |
| MS.gene26935.t1 | AT4G18890 | 36.000 | 300 | 102 | 12 | 14 | 246 | 6 | 282 | 1.94e-22 | 93.6 |
| MS.gene26935.t1 | AT1G78700 | 32.727 | 330 | 107 | 9 | 14 | 243 | 6 | 320 | 1.44e-19 | 86.3 |
| MS.gene26935.t1 | AT2G45880 | 51.515 | 66 | 32 | 0 | 13 | 78 | 68 | 133 | 7.01e-14 | 71.2 |
| MS.gene26935.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 98 | 156 | 8.29e-13 | 68.2 |
| MS.gene26935.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 98 | 156 | 8.36e-13 | 68.2 |
| MS.gene26935.t1 | AT5G45300 | 54.237 | 59 | 27 | 0 | 26 | 84 | 112 | 170 | 8.42e-13 | 68.2 |
Find 69 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAATGGGACATGGATTT+TGG | 0.099494 | 1.3:+3110442 | None:intergenic |
| ATCGAATATCTTTGATGTTA+TGG | 0.271986 | 1.3:+3111220 | None:intergenic |
| TGATGAGGGATTGGATGATT+TGG | 0.284092 | 1.3:-3110040 | MS.gene26935:CDS |
| AGATGCAGCAAAAGGGTAAT+TGG | 0.291581 | 1.3:+3110251 | None:intergenic |
| CTCCATTTCCAATGAATCTA+TGG | 0.308568 | 1.3:-3110280 | MS.gene26935:CDS |
| CTTGGGTTCGTTGGGCTAGC+AGG | 0.311924 | 1.3:+3110222 | None:intergenic |
| TTGGAACTCACTCTTGGAAC+TGG | 0.334633 | 1.3:-3110021 | MS.gene26935:CDS |
| GAGTAGAGAGGAGGTGTAAC+AGG | 0.350527 | 1.3:+3110342 | None:intergenic |
| GGAAAATGCCATAGATTCAT+TGG | 0.351258 | 1.3:+3110272 | None:intergenic |
| TGCCATAGATTCATTGGAAA+TGG | 0.364323 | 1.3:+3110278 | None:intergenic |
| AACTGGGAAAGGAAAGATTT+AGG | 0.375942 | 1.3:-3110004 | None:intergenic |
| GGAATTGAAGTTGGAAAAGA+TGG | 0.394254 | 1.3:+3110420 | None:intergenic |
| GATGATTTGGAACTCACTCT+TGG | 0.402192 | 1.3:-3110027 | MS.gene26935:CDS |
| TATGAAGGCTTGGGTTCGTT+GGG | 0.406355 | 1.3:+3110214 | None:intergenic |
| GAAGAGGTTGGCACTGCAAA+TGG | 0.411998 | 1.3:+3110159 | None:intergenic |
| TTGGGTTCGTTGGGCTAGCA+GGG | 0.427382 | 1.3:+3110223 | None:intergenic |
| TTGATTGGAGTATGAAGGCT+TGG | 0.439266 | 1.3:+3110204 | None:intergenic |
| CTCTTCATCTTTCAATGCTG+TGG | 0.445261 | 1.3:-3110142 | MS.gene26935:CDS |
| AGTTGGAAAAGATGGACAAA+TGG | 0.453995 | 1.3:+3110428 | None:intergenic |
| GCAAAAGGATGGAACTTGAT+TGG | 0.457115 | 1.3:+3110189 | None:intergenic |
| GGGGTAGAAGATGCAGCAAA+AGG | 0.462613 | 1.3:+3110243 | None:intergenic |
| TGGTATGAAGGAATTGAAGT+TGG | 0.464795 | 1.3:+3110411 | None:intergenic |
| GTATGAAGGCTTGGGTTCGT+TGG | 0.466162 | 1.3:+3110213 | None:intergenic |
| GATATCCACAAAGGAGGAAA+AGG | 0.466792 | 1.3:+3110375 | None:intergenic |
| ATGGAGTCCCATGCTGGAAT+TGG | 0.471276 | 1.3:+3110297 | None:intergenic |
| GAAAAGGCTGAGGAGTGAAT+TGG | 0.472490 | 1.3:+3110391 | None:intergenic |
| CTTCTGCACAAAGAGCTTTG+AGG | 0.474572 | 1.3:+3111141 | None:intergenic |
| GGTGTAAGGCTTATTGATGT+TGG | 0.478866 | 1.3:+3110318 | None:intergenic |
| AAAGCTCTTTGTGCAGAAGC+TGG | 0.483728 | 1.3:-3111137 | MS.gene26935:CDS |
| TTGGGGTGCAAGTAAAGCCT+TGG | 0.488933 | 1.3:-3110080 | MS.gene26935:CDS |
| ATTGATGTTGGTGAGTAGAG+AGG | 0.496798 | 1.3:+3110330 | None:intergenic |
| GCAAATGGAGATTGTGCAAA+AGG | 0.501672 | 1.3:+3110174 | None:intergenic |
| GGAACTTGATTGGAGTATGA+AGG | 0.505849 | 1.3:+3110199 | None:intergenic |
| GTTGGAAAAGATGGACAAAT+GGG | 0.506046 | 1.3:+3110429 | None:intergenic |
| TGGGGTGCAAGTAAAGCCTT+GGG | 0.507029 | 1.3:-3110079 | MS.gene26935:CDS |
| CTCACTCTTGGAACTGGGAA+AGG | 0.507498 | 1.3:-3110015 | MS.gene26935:CDS |
| TGATTGGAGTATGAAGGCTT+GGG | 0.509209 | 1.3:+3110205 | None:intergenic |
| TTGGAAATGGAGTCCCATGC+TGG | 0.515325 | 1.3:+3110291 | None:intergenic |
| CCCATGCTGGAATTGGTGTA+AGG | 0.517184 | 1.3:+3110304 | None:intergenic |
| ATATGATGAGAGAAAGAAGA+AGG | 0.521014 | 1.3:-3111247 | MS.gene26935:CDS |
| GTGCCTGCATCATTGTTTAG+TGG | 0.523421 | 1.3:+3110480 | None:intergenic |
| CTCTTTGTGCAGAAGCTGGT+TGG | 0.523500 | 1.3:-3111133 | MS.gene26935:CDS |
| ATGGAGATTGTGCAAAAGGA+TGG | 0.524930 | 1.3:+3110178 | None:intergenic |
| CCTGCATCATTGTTTAGTGG+AGG | 0.531453 | 1.3:+3110483 | None:intergenic |
| TTGTGCAGAAGCTGGTTGGT+CGG | 0.532073 | 1.3:-3111129 | MS.gene26935:CDS |
| CTAAGTTACCTTGCGATAGG+TGG | 0.533179 | 1.3:+3111091 | None:intergenic |
| TTCTCTTTCTCCTTCCACGA+TGG | 0.536162 | 1.3:+3111272 | None:intergenic |
| TGGGTTCGTTGGGCTAGCAG+GGG | 0.542358 | 1.3:+3110224 | None:intergenic |
| ATTCTAAGTTACCTTGCGAT+AGG | 0.550407 | 1.3:+3111088 | None:intergenic |
| TCGGAGGAAGCCATCGTGGA+AGG | 0.554225 | 1.3:-3111282 | MS.gene26935:CDS |
| TGGAACTCACTCTTGGAACT+GGG | 0.557403 | 1.3:-3110020 | MS.gene26935:CDS |
| TGAGGAGTGAATTGGTATGA+AGG | 0.559547 | 1.3:+3110399 | None:intergenic |
| CACAGCATTGAAAGATGAAG+AGG | 0.562677 | 1.3:+3110143 | None:intergenic |
| CACAAAGGAGGAAAAGGCTG+AGG | 0.574609 | 1.3:+3110381 | None:intergenic |
| ATAACATCAAAGATATTCGA+TGG | 0.589300 | 1.3:-3111218 | MS.gene26935:CDS |
| GGGTAGAAGATGCAGCAAAA+GGG | 0.593286 | 1.3:+3110244 | None:intergenic |
| CCTCCACTAAACAATGATGC+AGG | 0.594195 | 1.3:-3110483 | MS.gene26935:CDS |
| GCCTTACACCAATTCCAGCA+TGG | 0.599458 | 1.3:-3110305 | MS.gene26935:CDS |
| CCTTACACCAATTCCAGCAT+GGG | 0.605296 | 1.3:-3110304 | MS.gene26935:CDS |
| GGTTGGTCGGTCGAAGAAGA+CGG | 0.613610 | 1.3:-3111116 | MS.gene26935:CDS |
| AAAGATGGACAAATGGGACA+TGG | 0.629842 | 1.3:+3110435 | None:intergenic |
| GATGTTGGTGAGTAGAGAGG+AGG | 0.631246 | 1.3:+3110333 | None:intergenic |
| GAATTCGGAGGAAGCCATCG+TGG | 0.640888 | 1.3:-3111286 | MS.gene26935:CDS |
| AGACGGAACCACCTATCGCA+AGG | 0.647720 | 1.3:-3111099 | MS.gene26935:intron |
| GCATTGAAAGATGAAGAGGT+TGG | 0.651739 | 1.3:+3110147 | None:intergenic |
| TCGATGGACTTCGAGCTCAA+AGG | 0.659335 | 1.3:-3111202 | MS.gene26935:CDS |
| CTGTTTGATATCCACAAAGG+AGG | 0.659720 | 1.3:+3110369 | None:intergenic |
| GCACTGTTTGATATCCACAA+AGG | 0.716903 | 1.3:+3110366 | None:intergenic |
| GAAGCATTGTGACAACAACG+AGG | 0.796257 | 1.3:-3111165 | MS.gene26935:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTACATATGAAAAGTAT+CGG | + | chr1.3:3110386-3110405 | None:intergenic | 15.0% |
| !! | AAACTTCAACAAAAAGAATT+CGG | - | chr1.3:3110021-3110040 | MS.gene26935:CDS | 20.0% |
| !! | GAACAATAATGTAGTATAAA+TGG | + | chr1.3:3110315-3110334 | None:intergenic | 20.0% |
| !! | TAGTATAAATGGATAGTTAT+AGG | + | chr1.3:3110304-3110323 | None:intergenic | 20.0% |
| !!! | AACATAATTATCTGATCTTT+TGG | - | chr1.3:3110339-3110358 | MS.gene26935:CDS | 20.0% |
| !!! | ATTGTTGTTTTTTGTGAATA+GGG | - | chr1.3:3110809-3110828 | MS.gene26935:intron | 20.0% |
| ! | ATAACATCAAAGATATTCGA+TGG | - | chr1.3:3110104-3110123 | MS.gene26935:CDS | 25.0% |
| ! | ATCGAATATCTTTGATGTTA+TGG | + | chr1.3:3110105-3110124 | None:intergenic | 25.0% |
| ! | GATGAAAAAATTCATGATGA+GGG | - | chr1.3:3111268-3111287 | MS.gene26935:CDS | 25.0% |
| ! | TGATGAAAAAATTCATGATG+AGG | - | chr1.3:3111267-3111286 | MS.gene26935:CDS | 25.0% |
| !! | ATCTGATGAATAAGATCTTT+TGG | + | chr1.3:3110442-3110461 | None:intergenic | 25.0% |
| !! | TTTTGTTGAAGTTTTTGTGT+CGG | + | chr1.3:3110015-3110034 | None:intergenic | 25.0% |
| !!! | ACATAGTTGTTTTGAACTAA+AGG | + | chr1.3:3110628-3110647 | None:intergenic | 25.0% |
| !!! | ATACCAATTGATTTTCTTCA+TGG | + | chr1.3:3110541-3110560 | None:intergenic | 25.0% |
| !!! | GATTGTTGTTTTTTGTGAAT+AGG | - | chr1.3:3110808-3110827 | MS.gene26935:intron | 25.0% |
| AAAAATTCATGATGAGGGAT+TGG | - | chr1.3:3111273-3111292 | MS.gene26935:CDS | 30.0% | |
| AAAGGTTAAAGAAGTTGAAG+TGG | + | chr1.3:3110610-3110629 | None:intergenic | 30.0% | |
| ACTAATGTTGCAAATAAGGT+AGG | + | chr1.3:3110735-3110754 | None:intergenic | 30.0% | |
| ATATGATGAGAGAAAGAAGA+AGG | - | chr1.3:3110075-3110094 | MS.gene26935:CDS | 30.0% | |
| ATGACAAGTTCAAAAATGCT+TGG | - | chr1.3:3111223-3111242 | MS.gene26935:CDS | 30.0% | |
| CAAGTAACAAAGAAACAAAG+AGG | + | chr1.3:3110272-3110291 | None:intergenic | 30.0% | |
| CTTCCATGAAGAAAATCAAT+TGG | - | chr1.3:3110535-3110554 | MS.gene26935:intron | 30.0% | |
| GTACACTAATGTTGCAAATA+AGG | + | chr1.3:3110739-3110758 | None:intergenic | 30.0% | |
| TGACAAGTTCAAAAATGCTT+GGG | - | chr1.3:3111224-3111243 | MS.gene26935:CDS | 30.0% | |
| ! | AATAGTGTGCATTTGAAATG+TGG | + | chr1.3:3110685-3110704 | None:intergenic | 30.0% |
| !! | ATTTTGGGAATAAGAGAAAG+AGG | + | chr1.3:3110867-3110886 | None:intergenic | 30.0% |
| !!! | TGAATTTTTTCATCAACCCA+AGG | + | chr1.3:3111262-3111281 | None:intergenic | 30.0% |
| AATTACACAAGCATGCATCA+AGG | + | chr1.3:3110513-3110532 | None:intergenic | 35.0% | |
| AGTTGGAAAAGATGGACAAA+TGG | + | chr1.3:3110897-3110916 | None:intergenic | 35.0% | |
| ATTCTAAGTTACCTTGCGAT+AGG | + | chr1.3:3110237-3110256 | None:intergenic | 35.0% | |
| CTCCATTTCCAATGAATCTA+TGG | - | chr1.3:3111042-3111061 | MS.gene26935:intron | 35.0% | |
| CTTCAACAAAAAGAATTCGG+AGG | - | chr1.3:3110024-3110043 | MS.gene26935:CDS | 35.0% | |
| GACAAGTTCAAAAATGCTTG+GGG | - | chr1.3:3111225-3111244 | MS.gene26935:CDS | 35.0% | |
| GGAAAATGCCATAGATTCAT+TGG | + | chr1.3:3111053-3111072 | None:intergenic | 35.0% | |
| GGAATTGAAGTTGGAAAAGA+TGG | + | chr1.3:3110905-3110924 | None:intergenic | 35.0% | |
| GTTGGAAAAGATGGACAAAT+GGG | + | chr1.3:3110896-3110915 | None:intergenic | 35.0% | |
| TGCCATAGATTCATTGGAAA+TGG | + | chr1.3:3111047-3111066 | None:intergenic | 35.0% | |
| TGGTATGAAGGAATTGAAGT+TGG | + | chr1.3:3110914-3110933 | None:intergenic | 35.0% | |
| ! | ACAAATGGGACATGGATTTT+GGG | + | chr1.3:3110882-3110901 | None:intergenic | 35.0% |
| AAAGATGGACAAATGGGACA+TGG | + | chr1.3:3110890-3110909 | None:intergenic | 40.0% | |
| AGATGCAGCAAAAGGGTAAT+TGG | + | chr1.3:3111074-3111093 | None:intergenic | 40.0% | |
| ATGGAGATTGTGCAAAAGGA+TGG | + | chr1.3:3111147-3111166 | None:intergenic | 40.0% | |
| CTCTTCATCTTTCAATGCTG+TGG | - | chr1.3:3111180-3111199 | MS.gene26935:CDS | 40.0% | |
| CTGTTTGATATCCACAAAGG+AGG | + | chr1.3:3110956-3110975 | None:intergenic | 40.0% | |
| GATATCCACAAAGGAGGAAA+AGG | + | chr1.3:3110950-3110969 | None:intergenic | 40.0% | |
| GCAAAAGGATGGAACTTGAT+TGG | + | chr1.3:3111136-3111155 | None:intergenic | 40.0% | |
| GCAAATGGAGATTGTGCAAA+AGG | + | chr1.3:3111151-3111170 | None:intergenic | 40.0% | |
| GCACTGTTTGATATCCACAA+AGG | + | chr1.3:3110959-3110978 | None:intergenic | 40.0% | |
| GCATTGAAAGATGAAGAGGT+TGG | + | chr1.3:3111178-3111197 | None:intergenic | 40.0% | |
| GGAACTTGATTGGAGTATGA+AGG | + | chr1.3:3111126-3111145 | None:intergenic | 40.0% | |
| GGTGTAAGGCTTATTGATGT+TGG | + | chr1.3:3111007-3111026 | None:intergenic | 40.0% | |
| TGAGGAGTGAATTGGTATGA+AGG | + | chr1.3:3110926-3110945 | None:intergenic | 40.0% | |
| TGATGAGGGATTGGATGATT+TGG | - | chr1.3:3111282-3111301 | MS.gene26935:CDS | 40.0% | |
| TGATTGGAGTATGAAGGCTT+GGG | + | chr1.3:3111120-3111139 | None:intergenic | 40.0% | |
| TTGATTGGAGTATGAAGGCT+TGG | + | chr1.3:3111121-3111140 | None:intergenic | 40.0% | |
| ! | ATTGATGTTGGTGAGTAGAG+AGG | + | chr1.3:3110995-3111014 | None:intergenic | 40.0% |
| ! | CACAGCATTGAAAGATGAAG+AGG | + | chr1.3:3111182-3111201 | None:intergenic | 40.0% |
| ! | GACAAATGGGACATGGATTT+TGG | + | chr1.3:3110883-3110902 | None:intergenic | 40.0% |
| ! | GATGATTTGGAACTCACTCT+TGG | - | chr1.3:3111295-3111314 | MS.gene26935:CDS | 40.0% |
| AAAGCTCTTTGTGCAGAAGC+TGG | - | chr1.3:3110185-3110204 | MS.gene26935:CDS | 45.0% | |
| CCTCCACTAAACAATGATGC+AGG | - | chr1.3:3110839-3110858 | MS.gene26935:intron | 45.0% | |
| CCTGCATCATTGTTTAGTGG+AGG | + | chr1.3:3110842-3110861 | None:intergenic | 45.0% | |
| CCTTACACCAATTCCAGCAT+GGG | - | chr1.3:3111018-3111037 | MS.gene26935:intron | 45.0% | |
| CTAAGTTACCTTGCGATAGG+TGG | + | chr1.3:3110234-3110253 | None:intergenic | 45.0% | |
| CTTCTGCACAAAGAGCTTTG+AGG | + | chr1.3:3110184-3110203 | None:intergenic | 45.0% | |
| GAAAAGGCTGAGGAGTGAAT+TGG | + | chr1.3:3110934-3110953 | None:intergenic | 45.0% | |
| GGGTAGAAGATGCAGCAAAA+GGG | + | chr1.3:3111081-3111100 | None:intergenic | 45.0% | |
| GTGCCTGCATCATTGTTTAG+TGG | + | chr1.3:3110845-3110864 | None:intergenic | 45.0% | |
| TATGAAGGCTTGGGTTCGTT+GGG | + | chr1.3:3111111-3111130 | None:intergenic | 45.0% | |
| TGGAACTCACTCTTGGAACT+GGG | - | chr1.3:3111302-3111321 | MS.gene26935:CDS | 45.0% | |
| TTCTCTTTCTCCTTCCACGA+TGG | + | chr1.3:3110053-3110072 | None:intergenic | 45.0% | |
| TTGGAACTCACTCTTGGAAC+TGG | - | chr1.3:3111301-3111320 | MS.gene26935:CDS | 45.0% | |
| !! | GAAGCATTGTGACAACAACG+AGG | - | chr1.3:3110157-3110176 | MS.gene26935:CDS | 45.0% |
| ATGGAGTCCCATGCTGGAAT+TGG | + | chr1.3:3111028-3111047 | None:intergenic | 50.0% | |
| CACAAAGGAGGAAAAGGCTG+AGG | + | chr1.3:3110944-3110963 | None:intergenic | 50.0% | |
| CCCATGCTGGAATTGGTGTA+AGG | + | chr1.3:3111021-3111040 | None:intergenic | 50.0% | |
| CTCACTCTTGGAACTGGGAA+AGG | - | chr1.3:3111307-3111326 | MS.gene26935:CDS | 50.0% | |
| CTCTTTGTGCAGAAGCTGGT+TGG | - | chr1.3:3110189-3110208 | MS.gene26935:CDS | 50.0% | |
| GAAGAGGTTGGCACTGCAAA+TGG | + | chr1.3:3111166-3111185 | None:intergenic | 50.0% | |
| GCCTTACACCAATTCCAGCA+TGG | - | chr1.3:3111017-3111036 | MS.gene26935:intron | 50.0% | |
| GGGGTAGAAGATGCAGCAAA+AGG | + | chr1.3:3111082-3111101 | None:intergenic | 50.0% | |
| GTATGAAGGCTTGGGTTCGT+TGG | + | chr1.3:3111112-3111131 | None:intergenic | 50.0% | |
| TGGGGTGCAAGTAAAGCCTT+GGG | - | chr1.3:3111243-3111262 | MS.gene26935:CDS | 50.0% | |
| TTGGAAATGGAGTCCCATGC+TGG | + | chr1.3:3111034-3111053 | None:intergenic | 50.0% | |
| TTGGGGTGCAAGTAAAGCCT+TGG | - | chr1.3:3111242-3111261 | MS.gene26935:CDS | 50.0% | |
| TTGTGCAGAAGCTGGTTGGT+CGG | - | chr1.3:3110193-3110212 | MS.gene26935:CDS | 50.0% | |
| ! | CTCAGCCTTTTCCTCCTTTG+TGG | - | chr1.3:3110942-3110961 | MS.gene26935:intron | 50.0% |
| ! | GAGTAGAGAGGAGGTGTAAC+AGG | + | chr1.3:3110983-3111002 | None:intergenic | 50.0% |
| ! | GATGTTGGTGAGTAGAGAGG+AGG | + | chr1.3:3110992-3111011 | None:intergenic | 50.0% |
| ! | TCGATGGACTTCGAGCTCAA+AGG | - | chr1.3:3110120-3110139 | MS.gene26935:CDS | 50.0% |
| AGACGGAACCACCTATCGCA+AGG | - | chr1.3:3110223-3110242 | MS.gene26935:CDS | 55.0% | |
| GAATTCGGAGGAAGCCATCG+TGG | - | chr1.3:3110036-3110055 | MS.gene26935:CDS | 55.0% | |
| ! | GGTTGGTCGGTCGAAGAAGA+CGG | - | chr1.3:3110206-3110225 | MS.gene26935:CDS | 55.0% |
| !! | TTGGGTTCGTTGGGCTAGCA+GGG | + | chr1.3:3111102-3111121 | None:intergenic | 55.0% |
| TCGGAGGAAGCCATCGTGGA+AGG | - | chr1.3:3110040-3110059 | MS.gene26935:CDS | 60.0% | |
| !! | CTTGGGTTCGTTGGGCTAGC+AGG | + | chr1.3:3111103-3111122 | None:intergenic | 60.0% |
| !! | TGGGTTCGTTGGGCTAGCAG+GGG | + | chr1.3:3111101-3111120 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3110005 | 3111339 | 3110005 | ID=MS.gene26935 |
| chr1.3 | mRNA | 3110005 | 3111339 | 3110005 | ID=MS.gene26935.t1;Parent=MS.gene26935 |
| chr1.3 | exon | 3111100 | 3111339 | 3111100 | ID=MS.gene26935.t1.exon1;Parent=MS.gene26935.t1 |
| chr1.3 | CDS | 3111100 | 3111339 | 3111100 | ID=cds.MS.gene26935.t1;Parent=MS.gene26935.t1 |
| chr1.3 | exon | 3110005 | 3110514 | 3110005 | ID=MS.gene26935.t1.exon2;Parent=MS.gene26935.t1 |
| chr1.3 | CDS | 3110005 | 3110514 | 3110005 | ID=cds.MS.gene26935.t1;Parent=MS.gene26935.t1 |
| Gene Sequence |
| Protein sequence |