Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26980.t1 | XP_024632961.1 | 87.8 | 720 | 76 | 3 | 1 | 708 | 81 | 800 | 0.00E+00 | 1281.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26980.t1 | Q9SZL8 | 27.1 | 584 | 360 | 10 | 20 | 601 | 118 | 637 | 7.8e-60 | 233.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26980.t1 | D3YBB9 | 79.5 | 709 | 125 | 4 | 2 | 700 | 114 | 812 | 0.0e+00 | 1136.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene26980.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26980.t1 | MTR_0558s0020 | 88.745 | 231 | 26 | 0 | 1 | 231 | 66 | 296 | 4.86e-153 | 446 |
MS.gene26980.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 1 | 237 | 1 | 237 | 1.93e-142 | 421 |
MS.gene26980.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 332 | 431 | 230 | 306 | 3.47e-34 | 134 |
MS.gene26980.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 503 | 551 | 314 | 362 | 8.14e-11 | 64.7 |
MS.gene26980.t1 | MTR_1g083640 | 90.196 | 204 | 20 | 0 | 1 | 204 | 81 | 284 | 4.46e-136 | 402 |
MS.gene26980.t1 | MTR_8g446020 | 79.825 | 228 | 46 | 0 | 4 | 231 | 29 | 256 | 1.04e-131 | 390 |
MS.gene26980.t1 | MTR_0337s0060 | 58.544 | 316 | 31 | 4 | 383 | 695 | 21 | 239 | 1.72e-108 | 329 |
MS.gene26980.t1 | MTR_0337s0040 | 78.125 | 192 | 42 | 0 | 4 | 195 | 30 | 221 | 6.11e-106 | 322 |
MS.gene26980.t1 | MTR_2g014100 | 86.628 | 172 | 23 | 0 | 1 | 172 | 74 | 245 | 1.43e-105 | 322 |
MS.gene26980.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 27 | 168 | 3 | 144 | 4.70e-87 | 270 |
MS.gene26980.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 18 | 169 | 9 | 160 | 3.62e-86 | 268 |
MS.gene26980.t1 | MTR_3g028680 | 80.380 | 158 | 28 | 1 | 554 | 708 | 1 | 158 | 1.06e-83 | 263 |
MS.gene26980.t1 | MTR_3g008240 | 86.232 | 138 | 19 | 0 | 1 | 138 | 66 | 203 | 1.98e-80 | 255 |
MS.gene26980.t1 | MTR_4g040430 | 85.507 | 138 | 16 | 1 | 1 | 138 | 65 | 198 | 9.76e-79 | 250 |
MS.gene26980.t1 | MTR_2g067090 | 77.419 | 155 | 32 | 1 | 557 | 708 | 99 | 253 | 4.80e-75 | 244 |
MS.gene26980.t1 | MTR_4g133495 | 61.538 | 182 | 44 | 2 | 512 | 690 | 88 | 246 | 8.27e-66 | 219 |
MS.gene26980.t1 | MTR_4g133340 | 61.538 | 182 | 44 | 2 | 512 | 690 | 88 | 246 | 8.27e-66 | 219 |
MS.gene26980.t1 | MTR_5g071590 | 80.583 | 103 | 20 | 0 | 1 | 103 | 78 | 180 | 1.90e-56 | 191 |
MS.gene26980.t1 | MTR_6g051425 | 33.333 | 273 | 154 | 5 | 21 | 277 | 64 | 324 | 2.81e-36 | 140 |
MS.gene26980.t1 | MTR_1281s0010 | 80.952 | 63 | 12 | 0 | 1 | 63 | 47 | 109 | 6.47e-29 | 111 |
MS.gene26980.t1 | MTR_2g067130 | 62.963 | 81 | 24 | 2 | 631 | 708 | 46 | 123 | 5.32e-22 | 93.6 |
MS.gene26980.t1 | MTR_1g070355 | 25.714 | 280 | 192 | 4 | 21 | 298 | 119 | 384 | 2.85e-16 | 83.2 |
MS.gene26980.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 195 | 230 | 14 | 49 | 1.06e-13 | 67.4 |
MS.gene26980.t1 | MTR_0402s0040 | 26.000 | 150 | 96 | 3 | 20 | 169 | 71 | 205 | 1.78e-12 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26980.t1 | AT4G38180 | 27.844 | 589 | 349 | 12 | 20 | 601 | 118 | 637 | 3.21e-68 | 239 |
MS.gene26980.t1 | AT4G15090 | 25.682 | 623 | 394 | 12 | 59 | 677 | 121 | 678 | 1.73e-59 | 215 |
MS.gene26980.t1 | AT4G15090 | 25.682 | 623 | 394 | 12 | 59 | 677 | 121 | 678 | 1.73e-59 | 215 |
MS.gene26980.t1 | AT4G15090 | 25.682 | 623 | 394 | 12 | 59 | 677 | 121 | 678 | 1.73e-59 | 215 |
MS.gene26980.t1 | AT4G15090 | 25.682 | 623 | 394 | 12 | 59 | 677 | 121 | 678 | 1.73e-59 | 215 |
MS.gene26980.t1 | AT4G15090 | 25.682 | 623 | 394 | 12 | 59 | 677 | 121 | 678 | 1.73e-59 | 215 |
MS.gene26980.t1 | AT2G27110 | 26.131 | 597 | 367 | 15 | 63 | 655 | 108 | 634 | 2.24e-53 | 198 |
MS.gene26980.t1 | AT2G27110 | 26.131 | 597 | 367 | 15 | 63 | 655 | 108 | 634 | 2.24e-53 | 198 |
MS.gene26980.t1 | AT2G27110 | 27.112 | 509 | 314 | 11 | 149 | 655 | 36 | 489 | 5.96e-53 | 195 |
MS.gene26980.t1 | AT3G06250 | 24.957 | 581 | 321 | 14 | 20 | 597 | 235 | 703 | 5.12e-49 | 184 |
MS.gene26980.t1 | AT3G06250 | 24.957 | 581 | 321 | 14 | 20 | 597 | 235 | 703 | 5.12e-49 | 184 |
MS.gene26980.t1 | AT3G06250 | 24.957 | 581 | 321 | 14 | 20 | 597 | 235 | 703 | 5.12e-49 | 184 |
MS.gene26980.t1 | AT1G76320 | 25.039 | 643 | 390 | 18 | 19 | 655 | 41 | 597 | 3.29e-48 | 181 |
MS.gene26980.t1 | AT1G76320 | 25.039 | 643 | 390 | 18 | 19 | 655 | 41 | 597 | 8.39e-48 | 181 |
MS.gene26980.t1 | AT1G76320 | 25.039 | 643 | 390 | 18 | 19 | 655 | 41 | 597 | 8.39e-48 | 181 |
MS.gene26980.t1 | AT1G76320 | 25.039 | 643 | 390 | 18 | 19 | 655 | 41 | 597 | 9.77e-48 | 180 |
MS.gene26980.t1 | AT3G22170 | 23.810 | 546 | 344 | 10 | 146 | 689 | 216 | 691 | 2.87e-46 | 177 |
MS.gene26980.t1 | AT3G22170 | 23.810 | 546 | 344 | 10 | 146 | 689 | 216 | 691 | 2.87e-46 | 177 |
MS.gene26980.t1 | AT4G38170 | 24.740 | 481 | 294 | 13 | 171 | 639 | 24 | 448 | 1.62e-44 | 168 |
MS.gene26980.t1 | AT5G18960 | 24.786 | 585 | 320 | 16 | 20 | 597 | 256 | 727 | 7.26e-43 | 166 |
MS.gene26980.t1 | AT5G18960 | 24.786 | 585 | 320 | 16 | 20 | 597 | 256 | 727 | 7.26e-43 | 166 |
MS.gene26980.t1 | AT1G10240 | 24.872 | 587 | 352 | 18 | 21 | 595 | 95 | 604 | 4.96e-39 | 154 |
MS.gene26980.t1 | AT1G10240 | 24.872 | 587 | 352 | 18 | 21 | 595 | 95 | 604 | 4.96e-39 | 154 |
MS.gene26980.t1 | AT5G28530 | 24.074 | 594 | 359 | 16 | 21 | 596 | 100 | 619 | 4.61e-38 | 151 |
MS.gene26980.t1 | AT5G28530 | 23.906 | 594 | 356 | 17 | 21 | 596 | 100 | 615 | 3.90e-37 | 148 |
MS.gene26980.t1 | AT5G28530 | 23.906 | 594 | 356 | 17 | 21 | 596 | 100 | 615 | 3.90e-37 | 148 |
MS.gene26980.t1 | AT2G32250 | 23.529 | 680 | 390 | 17 | 5 | 679 | 68 | 622 | 4.09e-37 | 149 |
MS.gene26980.t1 | AT2G32250 | 23.529 | 680 | 390 | 17 | 5 | 679 | 27 | 581 | 4.56e-37 | 149 |
MS.gene26980.t1 | AT2G32250 | 23.529 | 680 | 390 | 17 | 5 | 679 | 68 | 622 | 5.55e-37 | 149 |
MS.gene26980.t1 | AT2G32250 | 23.529 | 680 | 390 | 17 | 5 | 679 | 68 | 622 | 5.55e-37 | 149 |
MS.gene26980.t1 | AT2G32250 | 23.529 | 680 | 390 | 17 | 5 | 679 | 27 | 581 | 5.71e-37 | 148 |
MS.gene26980.t1 | AT2G32250 | 23.529 | 680 | 390 | 17 | 5 | 679 | 68 | 622 | 6.23e-37 | 149 |
MS.gene26980.t1 | AT2G32250 | 23.529 | 680 | 390 | 17 | 5 | 679 | 68 | 622 | 6.23e-37 | 149 |
MS.gene26980.t1 | AT2G32250 | 23.529 | 680 | 390 | 17 | 5 | 679 | 68 | 622 | 6.23e-37 | 149 |
MS.gene26980.t1 | AT1G80010 | 24.838 | 463 | 284 | 14 | 146 | 598 | 253 | 661 | 2.21e-33 | 137 |
MS.gene26980.t1 | AT1G52520 | 21.906 | 598 | 395 | 14 | 2 | 598 | 112 | 638 | 2.64e-31 | 130 |
MS.gene26980.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 106 | 369 | 1.68e-27 | 119 |
MS.gene26980.t1 | AT4G19990 | 36.090 | 133 | 71 | 3 | 527 | 657 | 438 | 558 | 7.53e-13 | 72.4 |
MS.gene26980.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.10e-27 | 119 |
MS.gene26980.t1 | AT4G19990 | 36.090 | 133 | 71 | 3 | 527 | 657 | 495 | 615 | 8.96e-13 | 72.4 |
MS.gene26980.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 177 | 440 | 2.35e-27 | 119 |
MS.gene26980.t1 | AT4G19990 | 36.090 | 133 | 71 | 3 | 527 | 657 | 509 | 629 | 9.80e-13 | 72.0 |
MS.gene26980.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.46e-27 | 118 |
MS.gene26980.t1 | AT4G19990 | 36.090 | 133 | 71 | 3 | 527 | 657 | 495 | 615 | 9.20e-13 | 72.4 |
MS.gene26980.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.46e-27 | 118 |
MS.gene26980.t1 | AT4G19990 | 36.090 | 133 | 71 | 3 | 527 | 657 | 495 | 615 | 9.20e-13 | 72.4 |
MS.gene26980.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.90e-27 | 118 |
MS.gene26980.t1 | AT4G19990 | 36.090 | 133 | 71 | 3 | 527 | 657 | 495 | 615 | 8.82e-13 | 72.4 |
MS.gene26980.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.90e-27 | 118 |
MS.gene26980.t1 | AT4G19990 | 36.090 | 133 | 71 | 3 | 527 | 657 | 495 | 615 | 8.82e-13 | 72.4 |
MS.gene26980.t1 | AT5G28530 | 21.575 | 584 | 323 | 19 | 21 | 596 | 100 | 556 | 5.98e-19 | 91.7 |
MS.gene26980.t1 | AT5G28530 | 21.404 | 584 | 320 | 20 | 21 | 596 | 100 | 552 | 3.87e-18 | 89.4 |
Find 108 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 1.3:-2586136 | MS.gene26980:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 1.3:-2586445 | MS.gene26980:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 1.3:+2585310 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1.3:-2586178 | MS.gene26980:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 1.3:-2587229 | MS.gene26980:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 1.3:-2586726 | MS.gene26980:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 1.3:-2586693 | MS.gene26980:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 1.3:+2586599 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 1.3:+2585316 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 1.3:-2586404 | MS.gene26980:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 1.3:-2585464 | MS.gene26980:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 1.3:+2586581 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1.3:+2587179 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 1.3:-2585881 | MS.gene26980:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 1.3:-2586304 | MS.gene26980:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 1.3:-2585472 | MS.gene26980:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 1.3:-2587172 | MS.gene26980:intron |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1.3:-2587180 | MS.gene26980:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 1.3:-2586305 | MS.gene26980:CDS |
TTCCTTCAAATACTATTATG+AGG | 0.392551 | 1.3:-2586004 | MS.gene26980:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 1.3:+2585588 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 1.3:+2587709 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 1.3:-2585324 | MS.gene26980:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 1.3:+2585334 | None:intergenic |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 1.3:-2585439 | MS.gene26980:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 1.3:-2585756 | MS.gene26980:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 1.3:+2585833 | None:intergenic |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 1.3:+2585832 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1.3:-2587532 | MS.gene26980:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 1.3:-2587650 | MS.gene26980:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 1.3:+2586588 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1.3:-2587667 | MS.gene26980:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 1.3:+2585655 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 1.3:-2587784 | MS.gene26980:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 1.3:-2587502 | MS.gene26980:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 1.3:-2586514 | MS.gene26980:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 1.3:-2586350 | MS.gene26980:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 1.3:-2585755 | MS.gene26980:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 1.3:-2587818 | MS.gene26980:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 1.3:-2585798 | MS.gene26980:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 1.3:-2587457 | MS.gene26980:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1.3:+2586002 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 1.3:+2587673 | None:intergenic |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 1.3:-2585363 | MS.gene26980:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 1.3:-2587389 | MS.gene26980:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 1.3:+2587562 | None:intergenic |
CAATTTACAAAATAAGAAAT+CGG | 0.490263 | 1.3:-2587824 | MS.gene26980:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1.3:-2585988 | MS.gene26980:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 1.3:+2586713 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 1.3:-2586403 | MS.gene26980:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 1.3:-2587376 | MS.gene26980:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1.3:-2586164 | MS.gene26980:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 1.3:+2586084 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 1.3:-2587470 | MS.gene26980:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 1.3:+2587284 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 1.3:-2585364 | MS.gene26980:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 1.3:+2587574 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 1.3:-2586317 | MS.gene26980:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 1.3:-2585819 | MS.gene26980:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 1.3:+2587418 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 1.3:-2586145 | MS.gene26980:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 1.3:-2586299 | MS.gene26980:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 1.3:-2587614 | MS.gene26980:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 1.3:+2585839 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 1.3:+2586196 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 1.3:-2587773 | MS.gene26980:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 1.3:-2585818 | MS.gene26980:CDS |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 1.3:-2585799 | MS.gene26980:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 1.3:+2586201 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1.3:-2585987 | MS.gene26980:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1.3:-2587772 | MS.gene26980:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 1.3:+2586568 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 1.3:-2585598 | MS.gene26980:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 1.3:-2587322 | MS.gene26980:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 1.3:-2587454 | MS.gene26980:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 1.3:-2585512 | MS.gene26980:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 1.3:-2587615 | MS.gene26980:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 1.3:+2586083 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 1.3:+2585352 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 1.3:+2586062 | None:intergenic |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 1.3:-2587463 | MS.gene26980:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 1.3:-2585471 | MS.gene26980:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 1.3:-2586582 | MS.gene26980:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 1.3:-2585476 | MS.gene26980:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 1.3:-2585849 | MS.gene26980:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 1.3:+2585396 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 1.3:-2587383 | MS.gene26980:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 1.3:-2587469 | MS.gene26980:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 1.3:-2587380 | MS.gene26980:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 1.3:-2585509 | MS.gene26980:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 1.3:-2586086 | MS.gene26980:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1.3:-2586001 | MS.gene26980:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 1.3:+2585564 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 1.3:+2587724 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 1.3:+2586348 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 1.3:-2587449 | MS.gene26980:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 1.3:+2585834 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 1.3:-2586513 | MS.gene26980:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 1.3:+2585591 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1.3:-2586163 | MS.gene26980:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 1.3:+2585613 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 1.3:+2586042 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 1.3:-2585487 | MS.gene26980:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 1.3:+2585737 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 1.3:-2586586 | MS.gene26980:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 1.3:-2585754 | MS.gene26980:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 1.3:-2585903 | MS.gene26980:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 1.3:-2585902 | MS.gene26980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACCATAATTATAGTTTAA+TGG | + | chr1.3:2587605-2587624 | None:intergenic | 15.0% |
!! | AAACCATTAAACTATAATTA+TGG | - | chr1.3:2587599-2587618 | MS.gene26980:CDS | 15.0% |
!! | CAATTTACAAAATAAGAAAT+CGG | - | chr1.3:2584718-2584737 | MS.gene26980:intron | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr1.3:2587358-2587377 | MS.gene26980:CDS | 15.0% |
!! | ATGTCTATAAGATATATAAG+TGG | - | chr1.3:2584927-2584946 | MS.gene26980:intron | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | - | chr1.3:2584928-2584947 | MS.gene26980:intron | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr1.3:2585545-2585564 | MS.gene26980:CDS | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr1.3:2586167-2586186 | MS.gene26980:CDS | 20.0% |
!!! | CTATACATTTTCACATTTTT+TGG | - | chr1.3:2587501-2587520 | MS.gene26980:CDS | 20.0% |
!!! | CTTATTTTGTAAATTGTTCT+TGG | + | chr1.3:2584714-2584733 | None:intergenic | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | - | chr1.3:2585517-2585536 | MS.gene26980:CDS | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | + | chr1.3:2586005-2586024 | None:intergenic | 25.0% |
! | AAACCAAATTAACAGTCTAA+TGG | + | chr1.3:2587562-2587581 | None:intergenic | 25.0% |
! | AAACCATTAGACTGTTAATT+TGG | - | chr1.3:2587556-2587575 | MS.gene26980:CDS | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | - | chr1.3:2587456-2587475 | MS.gene26980:CDS | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | - | chr1.3:2584724-2584743 | MS.gene26980:intron | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | - | chr1.3:2585362-2585381 | MS.gene26980:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | + | chr1.3:2585388-2585407 | None:intergenic | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | - | chr1.3:2586364-2586383 | MS.gene26980:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | - | chr1.3:2585435-2585454 | MS.gene26980:CDS | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | + | chr1.3:2586503-2586522 | None:intergenic | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | - | chr1.3:2587389-2587408 | MS.gene26980:CDS | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | - | chr1.3:2586538-2586557 | MS.gene26980:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | - | chr1.3:2586097-2586116 | MS.gene26980:CDS | 25.0% |
!! | ACGCATTTATTACTATGTTT+TGG | - | chr1.3:2587529-2587548 | MS.gene26980:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | - | chr1.3:2585537-2585556 | MS.gene26980:CDS | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | - | chr1.3:2585793-2585812 | MS.gene26980:CDS | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | - | chr1.3:2587475-2587494 | MS.gene26980:CDS | 25.0% |
!! | TTTTCAATTACTGAGTTAAG+TGG | - | chr1.3:2587633-2587652 | MS.gene26980:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | - | chr1.3:2586639-2586658 | MS.gene26980:CDS | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr1.3:2585544-2585563 | MS.gene26980:CDS | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr1.3:2585040-2585059 | MS.gene26980:intron | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr1.3:2586171-2586190 | MS.gene26980:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | - | chr1.3:2586640-2586659 | MS.gene26980:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | + | chr1.3:2585608-2585627 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | - | chr1.3:2584770-2584789 | MS.gene26980:intron | 30.0% | |
AACAATAAATATCGGCCATT+AGG | - | chr1.3:2585370-2585389 | MS.gene26980:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | - | chr1.3:2587218-2587237 | MS.gene26980:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | - | chr1.3:2586138-2586157 | MS.gene26980:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | - | chr1.3:2585073-2585092 | MS.gene26980:intron | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | - | chr1.3:2586139-2586158 | MS.gene26980:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | + | chr1.3:2585832-2585851 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | + | chr1.3:2586711-2586730 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | - | chr1.3:2585313-2585332 | MS.gene26980:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | - | chr1.3:2584758-2584777 | MS.gene26980:intron | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | + | chr1.3:2586543-2586562 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | - | chr1.3:2585474-2585493 | MS.gene26980:CDS | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | - | chr1.3:2586541-2586560 | MS.gene26980:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | - | chr1.3:2586053-2586072 | MS.gene26980:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | + | chr1.3:2586712-2586731 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | + | chr1.3:2585366-2585385 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | - | chr1.3:2584859-2584878 | MS.gene26980:intron | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | + | chr1.3:2586349-2586368 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | - | chr1.3:2584769-2584788 | MS.gene26980:intron | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | + | chr1.3:2585241-2585260 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | + | chr1.3:2586483-2586502 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | + | chr1.3:2587229-2587248 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | + | chr1.3:2585127-2585146 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | - | chr1.3:2585752-2585771 | MS.gene26980:CDS | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | + | chr1.3:2584971-2584990 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | - | chr1.3:2584892-2584911 | MS.gene26980:intron | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | - | chr1.3:2586598-2586617 | MS.gene26980:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | - | chr1.3:2585117-2585136 | MS.gene26980:intron | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | - | chr1.3:2587055-2587074 | MS.gene26980:intron | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr1.3:2585946-2585965 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | - | chr1.3:2585996-2586015 | MS.gene26980:CDS | 30.0% |
! | TCAGTTTTCAATTCAATGAG+TGG | + | chr1.3:2587777-2587796 | None:intergenic | 30.0% |
! | TGAGGCTTTAACAAATTAAG+CGG | - | chr1.3:2587327-2587346 | MS.gene26980:CDS | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr1.3:2587211-2587230 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | - | chr1.3:2586823-2586842 | MS.gene26980:intron | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | - | chr1.3:2586723-2586742 | MS.gene26980:intron | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr1.3:2585449-2585468 | MS.gene26980:CDS | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr1.3:2587103-2587122 | MS.gene26980:intron | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | - | chr1.3:2586724-2586743 | MS.gene26980:intron | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | - | chr1.3:2586820-2586839 | MS.gene26980:intron | 30.0% |
!!! | AAGACATAGCCAGTATTTTT+TGG | - | chr1.3:2585275-2585294 | MS.gene26980:intron | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | - | chr1.3:2585276-2585295 | MS.gene26980:intron | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | - | chr1.3:2586888-2586907 | MS.gene26980:intron | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr1.3:2586008-2586027 | MS.gene26980:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | - | chr1.3:2586378-2586397 | MS.gene26980:CDS | 35.0% | |
CATAAATTCCAAGGCAAGAT+AGG | + | chr1.3:2585575-2585594 | None:intergenic | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | - | chr1.3:2586379-2586398 | MS.gene26980:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | - | chr1.3:2585010-2585029 | MS.gene26980:intron | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | + | chr1.3:2586713-2586732 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | - | chr1.3:2584858-2584877 | MS.gene26980:intron | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | - | chr1.3:2586225-2586244 | MS.gene26980:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | - | chr1.3:2584853-2584872 | MS.gene26980:intron | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | - | chr1.3:2587309-2587328 | MS.gene26980:CDS | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | - | chr1.3:2587284-2587303 | MS.gene26980:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | - | chr1.3:2585072-2585091 | MS.gene26980:intron | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | - | chr1.3:2584795-2584814 | MS.gene26980:intron | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | - | chr1.3:2585153-2585172 | MS.gene26980:intron | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | + | chr1.3:2585584-2585603 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | + | chr1.3:2584836-2584855 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | - | chr1.3:2585849-2585868 | MS.gene26980:CDS | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | - | chr1.3:2587328-2587347 | MS.gene26980:CDS | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | - | chr1.3:2586661-2586680 | MS.gene26980:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr1.3:2586308-2586327 | MS.gene26980:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr1.3:2585455-2585474 | MS.gene26980:CDS | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | - | chr1.3:2586181-2586200 | MS.gene26980:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr1.3:2586021-2586040 | MS.gene26980:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr1.3:2587157-2587176 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | + | chr1.3:2586890-2586909 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | - | chr1.3:2586238-2586257 | MS.gene26980:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr1.3:2586830-2586849 | MS.gene26980:intron | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | - | chr1.3:2585892-2585911 | MS.gene26980:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | - | chr1.3:2586891-2586910 | MS.gene26980:intron | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | + | chr1.3:2586344-2586363 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | + | chr1.3:2585702-2585721 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | + | chr1.3:2587235-2587254 | None:intergenic | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | - | chr1.3:2586555-2586574 | MS.gene26980:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | - | chr1.3:2586787-2586806 | MS.gene26980:intron | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | - | chr1.3:2585588-2585607 | MS.gene26980:CDS | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | - | chr1.3:2587066-2587085 | MS.gene26980:intron | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | - | chr1.3:2586786-2586805 | MS.gene26980:intron | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | - | chr1.3:2586944-2586963 | MS.gene26980:intron | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | + | chr1.3:2586932-2586951 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | - | chr1.3:2587720-2587739 | MS.gene26980:CDS | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | + | chr1.3:2586957-2586976 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | - | chr1.3:2586554-2586573 | MS.gene26980:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | - | chr1.3:2585956-2585975 | MS.gene26980:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | - | chr1.3:2585698-2585717 | MS.gene26980:CDS | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | + | chr1.3:2585287-2585306 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | + | chr1.3:2585957-2585976 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | - | chr1.3:2585816-2585835 | MS.gene26980:CDS | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | - | chr1.3:2586693-2586712 | MS.gene26980:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | + | chr1.3:2586954-2586973 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | + | chr1.3:2587297-2587316 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | - | chr1.3:2586406-2586425 | MS.gene26980:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr1.3:2587149-2587168 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr1.3:2586833-2586852 | MS.gene26980:intron | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | - | chr1.3:2586237-2586256 | MS.gene26980:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | + | chr1.3:2584809-2584828 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | - | chr1.3:2585079-2585098 | MS.gene26980:intron | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | - | chr1.3:2585162-2585181 | MS.gene26980:intron | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | - | chr1.3:2585220-2585239 | MS.gene26980:intron | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | + | chr1.3:2584821-2584840 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | + | chr1.3:2586197-2586216 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | - | chr1.3:2586456-2586475 | MS.gene26980:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | + | chr1.3:2586808-2586827 | None:intergenic | 45.0% | |
CTCAAGTAGCACAAATGCTC+TGG | + | chr1.3:2584983-2585002 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | - | chr1.3:2587179-2587198 | MS.gene26980:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | - | chr1.3:2584863-2584882 | MS.gene26980:intron | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | - | chr1.3:2585159-2585178 | MS.gene26980:intron | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | - | chr1.3:2586397-2586416 | MS.gene26980:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | + | chr1.3:2586706-2586725 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | - | chr1.3:2586788-2586807 | MS.gene26980:intron | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | + | chr1.3:2585261-2585280 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | - | chr1.3:2587078-2587097 | MS.gene26980:intron | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | + | chr1.3:2584872-2584891 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | + | chr1.3:2586981-2587000 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | - | chr1.3:2586260-2586279 | MS.gene26980:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr1.3:2586243-2586262 | MS.gene26980:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr1.3:2584875-2584894 | MS.gene26980:intron | 45.0% |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr1.3:2585283-2585302 | MS.gene26980:intron | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | + | chr1.3:2585964-2585983 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | - | chr1.3:2585960-2585979 | MS.gene26980:CDS | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | - | chr1.3:2586743-2586762 | MS.gene26980:intron | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | + | chr1.3:2586461-2586480 | None:intergenic | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | - | chr1.3:2587178-2587197 | MS.gene26980:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | - | chr1.3:2586192-2586211 | MS.gene26980:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | - | chr1.3:2586744-2586763 | MS.gene26980:intron | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | - | chr1.3:2586029-2586048 | MS.gene26980:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | - | chr1.3:2587030-2587049 | MS.gene26980:intron | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | - | chr1.3:2587071-2587090 | MS.gene26980:intron | 50.0% | |
TGGGTGATCCTATCTTGCCT+TGG | - | chr1.3:2585564-2585583 | MS.gene26980:CDS | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | - | chr1.3:2586028-2586047 | MS.gene26980:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr1.3:2587193-2587212 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr1.3:2585085-2585104 | MS.gene26980:intron | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | + | chr1.3:2585977-2585996 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | - | chr1.3:2587070-2587089 | MS.gene26980:intron | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | + | chr1.3:2586462-2586481 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | - | chr1.3:2587084-2587103 | MS.gene26980:intron | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr1.3:2585166-2585185 | MS.gene26980:intron | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr1.3:2585088-2585107 | MS.gene26980:intron | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | - | chr1.3:2587033-2587052 | MS.gene26980:intron | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | - | chr1.3:2585093-2585112 | MS.gene26980:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 2584701 | 2587863 | 2584701 | ID=MS.gene26980 |
chr1.3 | mRNA | 2584701 | 2587863 | 2584701 | ID=MS.gene26980.t1;Parent=MS.gene26980 |
chr1.3 | exon | 2587173 | 2587863 | 2587173 | ID=MS.gene26980.t1.exon1;Parent=MS.gene26980.t1 |
chr1.3 | CDS | 2587173 | 2587863 | 2587173 | ID=cds.MS.gene26980.t1;Parent=MS.gene26980.t1 |
chr1.3 | exon | 2585305 | 2586738 | 2585305 | ID=MS.gene26980.t1.exon2;Parent=MS.gene26980.t1 |
chr1.3 | CDS | 2585305 | 2586738 | 2585305 | ID=cds.MS.gene26980.t1;Parent=MS.gene26980.t1 |
chr1.3 | exon | 2584701 | 2584720 | 2584701 | ID=MS.gene26980.t1.exon3;Parent=MS.gene26980.t1 |
chr1.3 | CDS | 2584701 | 2584720 | 2584701 | ID=cds.MS.gene26980.t1;Parent=MS.gene26980.t1 |
Gene Sequence |
Protein sequence |