Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27013.t1 | RHN77531.1 | 98.7 | 231 | 1 | 1 | 1 | 229 | 108 | 338 | 7.90E-82 | 313.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27013.t1 | Q9LQZ5 | 58.0 | 231 | 80 | 5 | 11 | 229 | 121 | 346 | 1.3e-40 | 167.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27013.t1 | A0A396JLJ5 | 98.7 | 231 | 1 | 1 | 1 | 229 | 108 | 338 | 5.7e-82 | 313.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27013.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27013.t1 | MTR_1g023230 | 100.000 | 121 | 0 | 0 | 1 | 121 | 108 | 228 | 2.19e-85 | 254 |
| MS.gene27013.t1 | MTR_3g112510 | 61.538 | 221 | 68 | 9 | 11 | 226 | 82 | 290 | 2.20e-72 | 222 |
| MS.gene27013.t1 | MTR_8g076620 | 54.132 | 242 | 78 | 7 | 1 | 229 | 110 | 331 | 4.05e-68 | 213 |
| MS.gene27013.t1 | MTR_5g021130 | 54.661 | 236 | 90 | 6 | 7 | 229 | 92 | 323 | 7.09e-68 | 212 |
| MS.gene27013.t1 | MTR_5g089750 | 45.062 | 162 | 82 | 3 | 15 | 169 | 249 | 410 | 3.98e-38 | 138 |
| MS.gene27013.t1 | MTR_3g014660 | 40.331 | 181 | 90 | 5 | 1 | 168 | 119 | 294 | 1.06e-35 | 129 |
| MS.gene27013.t1 | MTR_4g071110 | 41.611 | 149 | 62 | 2 | 12 | 160 | 14 | 137 | 2.65e-34 | 124 |
| MS.gene27013.t1 | MTR_8g039110 | 39.779 | 181 | 96 | 3 | 15 | 182 | 124 | 304 | 1.53e-32 | 120 |
| MS.gene27013.t1 | MTR_0363s0040 | 75.556 | 45 | 11 | 0 | 15 | 59 | 124 | 168 | 2.25e-20 | 86.7 |
| MS.gene27013.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 17 | 49 | 44 | 76 | 9.73e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27013.t1 | AT1G75520 | 52.340 | 235 | 87 | 7 | 11 | 229 | 121 | 346 | 1.42e-71 | 222 |
| MS.gene27013.t1 | AT3G51060 | 50.211 | 237 | 90 | 5 | 13 | 229 | 142 | 370 | 1.44e-68 | 215 |
| MS.gene27013.t1 | AT1G19790 | 50.000 | 244 | 105 | 7 | 1 | 228 | 102 | 344 | 1.03e-67 | 212 |
| MS.gene27013.t1 | AT1G19790 | 50.000 | 244 | 105 | 7 | 1 | 228 | 102 | 344 | 1.03e-67 | 212 |
| MS.gene27013.t1 | AT5G66350 | 49.333 | 225 | 91 | 6 | 15 | 229 | 120 | 331 | 6.76e-64 | 202 |
| MS.gene27013.t1 | AT5G66350 | 48.182 | 220 | 91 | 6 | 15 | 224 | 120 | 326 | 4.35e-61 | 194 |
| MS.gene27013.t1 | AT5G66350 | 49.065 | 214 | 86 | 6 | 15 | 218 | 120 | 320 | 6.38e-60 | 191 |
| MS.gene27013.t1 | AT2G21400 | 42.791 | 215 | 83 | 6 | 12 | 223 | 7 | 184 | 2.77e-48 | 157 |
| MS.gene27013.t1 | AT2G21400 | 42.791 | 215 | 83 | 6 | 12 | 223 | 6 | 183 | 2.81e-48 | 157 |
| MS.gene27013.t1 | AT4G36260 | 52.500 | 160 | 61 | 5 | 13 | 162 | 92 | 246 | 2.97e-46 | 156 |
| MS.gene27013.t1 | AT2G21400 | 41.981 | 212 | 74 | 6 | 12 | 223 | 6 | 168 | 3.52e-46 | 151 |
| MS.gene27013.t1 | AT2G21400 | 41.981 | 212 | 74 | 6 | 12 | 223 | 7 | 169 | 3.70e-46 | 151 |
| MS.gene27013.t1 | AT2G18120 | 47.134 | 157 | 56 | 3 | 13 | 162 | 70 | 206 | 1.92e-41 | 140 |
| MS.gene27013.t1 | AT2G18120 | 48.026 | 152 | 60 | 2 | 13 | 162 | 70 | 204 | 6.71e-39 | 134 |
| MS.gene27013.t1 | AT5G12330 | 45.625 | 160 | 75 | 3 | 15 | 162 | 112 | 271 | 1.57e-37 | 133 |
| MS.gene27013.t1 | AT5G12330 | 45.625 | 160 | 75 | 3 | 15 | 162 | 112 | 271 | 1.57e-37 | 133 |
| MS.gene27013.t1 | AT5G12330 | 45.625 | 160 | 75 | 3 | 15 | 162 | 199 | 358 | 1.75e-37 | 135 |
| MS.gene27013.t1 | AT5G33210 | 60.870 | 92 | 32 | 2 | 13 | 104 | 15 | 102 | 2.25e-31 | 111 |
| MS.gene27013.t1 | AT5G33210 | 48.819 | 127 | 54 | 4 | 13 | 139 | 50 | 165 | 3.18e-31 | 113 |
| MS.gene27013.t1 | AT3G54430 | 35.185 | 162 | 81 | 4 | 11 | 168 | 37 | 178 | 1.09e-23 | 94.0 |
| MS.gene27013.t1 | AT5G12330 | 82.609 | 46 | 8 | 0 | 15 | 60 | 112 | 157 | 9.83e-22 | 90.1 |
Find 59 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATCCCTCTGGAGCTTC+TGG | 0.278538 | 1.3:+2140833 | MS.gene27013:CDS |
| AGCTCCTCTTAATGCTTTCA+TGG | 0.295162 | 1.3:+2141700 | MS.gene27013:CDS |
| CACTCATGTCTTTAGGATCT+TGG | 0.300540 | 1.3:-2141746 | None:intergenic |
| TGAATTCACCGGCGGTGTTC+AGG | 0.312818 | 1.3:+2141420 | MS.gene27013:CDS |
| TATATACCTGTGGTAGTAAT+AGG | 0.332609 | 1.3:-2140878 | None:intergenic |
| AGGTCTTCAAGTGGTGGTTT+AGG | 0.350386 | 1.3:+2140575 | MS.gene27013:CDS |
| GGTGGTGGCGAGGGTTCTTC+CGG | 0.367254 | 1.3:+2141584 | MS.gene27013:CDS |
| CCACCACCAGCAGCAGCATT+TGG | 0.392576 | 1.3:-2141569 | None:intergenic |
| CGTTCGCGGCGTTTAGCAGC+TGG | 0.397352 | 1.3:-2140725 | None:intergenic |
| CCTCTTAATGCTTTCATGGC+TGG | 0.408461 | 1.3:+2141704 | MS.gene27013:CDS |
| GTGGACAATCTTTCTTAGCT+TGG | 0.415642 | 1.3:-2140631 | None:intergenic |
| TGAGTTGTTGCTGCCGTTCG+CGG | 0.429437 | 1.3:-2140739 | None:intergenic |
| GGCGAGGGTTCTTCCGGTGG+TGG | 0.430350 | 1.3:+2141590 | MS.gene27013:CDS |
| TTGAAATTAGGGTTGGAGTT+GGG | 0.437119 | 1.3:+2141380 | MS.gene27013:intron |
| AGTGGTGGTTTAGGTGGTGG+TGG | 0.442865 | 1.3:+2140584 | MS.gene27013:CDS |
| GGTTCTTCCGGTGGTGGCAG+CGG | 0.446891 | 1.3:+2141596 | MS.gene27013:CDS |
| TTCGCCACCGCTGCCACCAC+CGG | 0.449406 | 1.3:-2141603 | None:intergenic |
| CCAAATGCTGCTGCTGGTGG+TGG | 0.457278 | 1.3:+2141569 | MS.gene27013:CDS |
| AAACTCATGTGAAAAGTACT+TGG | 0.464467 | 1.3:+2140699 | MS.gene27013:CDS |
| TGCTGCTGCTGGTGGTGGCG+AGG | 0.465038 | 1.3:+2141574 | MS.gene27013:CDS |
| TTGTATGATCAAGGACTTGA+AGG | 0.474373 | 1.3:+2141533 | MS.gene27013:CDS |
| GAAAATCAAAATGATCCCTC+TGG | 0.474468 | 1.3:+2140824 | MS.gene27013:CDS |
| TGTCTTTAGGATCTTGGAGG+TGG | 0.488834 | 1.3:-2141740 | None:intergenic |
| GCTGCTGCTGGTGGTGGCGA+GGG | 0.489260 | 1.3:+2141575 | MS.gene27013:CDS |
| TCATGTCTTTAGGATCTTGG+AGG | 0.489282 | 1.3:-2141743 | None:intergenic |
| TATAGTGAAGAATACTCAAA+TGG | 0.492700 | 1.3:-2141674 | None:intergenic |
| TCAAGTGGTGGTTTAGGTGG+TGG | 0.495997 | 1.3:+2140581 | MS.gene27013:CDS |
| ATGAAAGCATTAAGAGGAGC+TGG | 0.499046 | 1.3:-2141698 | None:intergenic |
| CCTGTGGTAGTAATAGGTAC+TGG | 0.504192 | 1.3:-2140872 | None:intergenic |
| TCTTCCGGTGGTGGCAGCGG+TGG | 0.515802 | 1.3:+2141599 | MS.gene27013:CDS |
| TCTTCAAGTGGTGGTTTAGG+TGG | 0.516785 | 1.3:+2140578 | MS.gene27013:CDS |
| AGTAATAGGTACTGGAGTAC+AGG | 0.518362 | 1.3:-2140864 | None:intergenic |
| CCAGCCATGAAAGCATTAAG+AGG | 0.523927 | 1.3:-2141704 | None:intergenic |
| TTTGAAATTAGGGTTGGAGT+TGG | 0.534737 | 1.3:+2141379 | MS.gene27013:intron |
| GGTGGTGGCAGCGGTGGCGA+AGG | 0.539736 | 1.3:+2141605 | MS.gene27013:CDS |
| TTTACACACCTGAACACCGC+CGG | 0.552531 | 1.3:-2141428 | None:intergenic |
| TCCACCGGAGCTGAATTCAC+CGG | 0.555263 | 1.3:+2141409 | MS.gene27013:CDS |
| GAACTTGTTGCAAGAGTCGA+GGG | 0.557726 | 1.3:+2140666 | MS.gene27013:CDS |
| CAGCTGCTAAACGCCGCGAA+CGG | 0.557914 | 1.3:+2140726 | MS.gene27013:CDS |
| ATTGTTAACATTTGTTGTCG+TGG | 0.557983 | 1.3:-2141651 | None:intergenic |
| GTCTTTAGGATCTTGGAGGT+GGG | 0.561171 | 1.3:-2141739 | None:intergenic |
| CCAGTACCTATTACTACCAC+AGG | 0.564967 | 1.3:+2140872 | MS.gene27013:CDS |
| CAAACTGCTGTGAACATAGG+AGG | 0.565014 | 1.3:+2141491 | MS.gene27013:CDS |
| ACTAGTCCAAATGCTGCTGC+TGG | 0.565581 | 1.3:+2141563 | MS.gene27013:CDS |
| GCCGGTGAATTCAGCTCCGG+TGG | 0.569608 | 1.3:-2141410 | None:intergenic |
| TATCAAACTGCTGTGAACAT+AGG | 0.572121 | 1.3:+2141488 | MS.gene27013:CDS |
| GGTGGCGAGGGTTCTTCCGG+TGG | 0.572206 | 1.3:+2141587 | MS.gene27013:CDS |
| ACCGCCGGTGAATTCAGCTC+CGG | 0.574562 | 1.3:-2141413 | None:intergenic |
| TAGAGAACCAGAAGCTCCAG+AGG | 0.578477 | 1.3:-2140840 | None:intergenic |
| AGTCCAAATGCTGCTGCTGG+TGG | 0.584415 | 1.3:+2141566 | MS.gene27013:CDS |
| AACTCATGTGAAAAGTACTT+GGG | 0.591492 | 1.3:+2140700 | MS.gene27013:CDS |
| AGAACTTGTTGCAAGAGTCG+AGG | 0.603647 | 1.3:+2140665 | MS.gene27013:CDS |
| GTGATGAGGTCTTCAAGTGG+TGG | 0.621009 | 1.3:+2140569 | None:intergenic |
| CAAGTTCTACATCTAAGATG+TGG | 0.632750 | 1.3:-2140650 | None:intergenic |
| GGAATGAACTGTCAAGATTG+TGG | 0.658447 | 1.3:+2140605 | MS.gene27013:CDS |
| ACCGGAGCTGAATTCACCGG+CGG | 0.668533 | 1.3:+2141412 | MS.gene27013:CDS |
| AGAGAACCAGAAGCTCCAGA+GGG | 0.671479 | 1.3:-2140839 | None:intergenic |
| GTGTGTAAAAGTGAGTGCAA+TGG | 0.678715 | 1.3:+2141442 | MS.gene27013:CDS |
| ACAGTGATGAGGTCTTCAAG+TGG | 0.705760 | 1.3:+2140566 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTGATTTGAAATTA+GGG | + | chr1.3:2141369-2141388 | MS.gene27013:intron | 10.0% |
| !!! | TTTTTATTTGATTTGAAATT+AGG | + | chr1.3:2141368-2141387 | MS.gene27013:intron | 10.0% |
| !! | ATAGAATATATAGACTAATT+AGG | - | chr1.3:2141154-2141173 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | + | chr1.3:2141334-2141353 | MS.gene27013:intron | 15.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | + | chr1.3:2141001-2141020 | MS.gene27013:intron | 20.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | + | chr1.3:2141000-2141019 | MS.gene27013:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | + | chr1.3:2141125-2141144 | MS.gene27013:intron | 20.0% |
| !!! | TAGTTTTTTGATATATAGCT+AGG | + | chr1.3:2141040-2141059 | MS.gene27013:intron | 20.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | + | chr1.3:2141307-2141326 | MS.gene27013:intron | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | - | chr1.3:2141677-2141696 | None:intergenic | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | + | chr1.3:2141255-2141274 | MS.gene27013:intron | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | + | chr1.3:2141248-2141267 | MS.gene27013:intron | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | - | chr1.3:2140891-2140910 | None:intergenic | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | + | chr1.3:2141373-2141392 | MS.gene27013:intron | 25.0% |
| ATCCTTCAGAAGAAAAGAAA+GGG | - | chr1.3:2141236-2141255 | None:intergenic | 30.0% | |
| TATATACCTGTGGTAGTAAT+AGG | - | chr1.3:2140881-2140900 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | - | chr1.3:2141181-2141200 | None:intergenic | 30.0% | |
| ! | AAGGGAATTTTGTATGATCA+AGG | + | chr1.3:2141524-2141543 | MS.gene27013:CDS | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | + | chr1.3:2140699-2140718 | MS.gene27013:CDS | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | + | chr1.3:2140700-2140719 | MS.gene27013:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTCG+TGG | - | chr1.3:2141654-2141673 | None:intergenic | 30.0% |
| !! | CTAAGTTGATAGAGTATGAA+AGG | - | chr1.3:2141186-2141205 | None:intergenic | 30.0% |
| CATCCTTCAGAAGAAAAGAA+AGG | - | chr1.3:2141237-2141256 | None:intergenic | 35.0% | |
| GAAAATCAAAATGATCCCTC+TGG | + | chr1.3:2140824-2140843 | MS.gene27013:CDS | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | + | chr1.3:2141488-2141507 | MS.gene27013:CDS | 35.0% | |
| TTGAAATTAGGGTTGGAGTT+GGG | + | chr1.3:2141380-2141399 | MS.gene27013:intron | 35.0% | |
| TTGTATGATCAAGGACTTGA+AGG | + | chr1.3:2141533-2141552 | MS.gene27013:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | + | chr1.3:2141506-2141525 | MS.gene27013:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | - | chr1.3:2140653-2140672 | None:intergenic | 35.0% |
| ! | TTCCCTTTCTTTTCTTCTGA+AGG | + | chr1.3:2141231-2141250 | MS.gene27013:intron | 35.0% |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | + | chr1.3:2141379-2141398 | MS.gene27013:intron | 35.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | + | chr1.3:2141700-2141719 | MS.gene27013:CDS | 40.0% | |
| GGAATGAACTGTCAAGATTG+TGG | + | chr1.3:2140605-2140624 | MS.gene27013:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | - | chr1.3:2140634-2140653 | None:intergenic | 40.0% | |
| GTGTGTAAAAGTGAGTGCAA+TGG | + | chr1.3:2141442-2141461 | MS.gene27013:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | + | chr1.3:2141505-2141524 | MS.gene27013:CDS | 40.0% |
| !! | AGTAATAGGTACTGGAGTAC+AGG | - | chr1.3:2140867-2140886 | None:intergenic | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | - | chr1.3:2141701-2141720 | None:intergenic | 40.0% |
| AGGTCTTCAAGTGGTGGTTT+AGG | + | chr1.3:2140575-2140594 | MS.gene27013:CDS | 45.0% | |
| CAAACTGCTGTGAACATAGG+AGG | + | chr1.3:2141491-2141510 | MS.gene27013:CDS | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | + | chr1.3:2140872-2140891 | MS.gene27013:CDS | 45.0% | |
| CCTCTTAATGCTTTCATGGC+TGG | + | chr1.3:2141704-2141723 | MS.gene27013:CDS | 45.0% | |
| CCTGTGGTAGTAATAGGTAC+TGG | - | chr1.3:2140875-2140894 | None:intergenic | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | + | chr1.3:2141089-2141108 | MS.gene27013:intron | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | + | chr1.3:2140578-2140597 | MS.gene27013:CDS | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | + | chr1.3:2141394-2141413 | MS.gene27013:CDS | 45.0% |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | + | chr1.3:2140665-2140684 | MS.gene27013:CDS | 45.0% |
| !! | CCAGCCATGAAAGCATTAAG+AGG | - | chr1.3:2141707-2141726 | None:intergenic | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | + | chr1.3:2140666-2140685 | MS.gene27013:CDS | 45.0% |
| ACTAGTCCAAATGCTGCTGC+TGG | + | chr1.3:2141563-2141582 | MS.gene27013:CDS | 50.0% | |
| AGAGAACCAGAAGCTCCAGA+GGG | - | chr1.3:2140842-2140861 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | - | chr1.3:2140843-2140862 | None:intergenic | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | + | chr1.3:2140581-2140600 | MS.gene27013:CDS | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | - | chr1.3:2141431-2141450 | None:intergenic | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | + | chr1.3:2140833-2140852 | MS.gene27013:CDS | 50.0% |
| AGTCCAAATGCTGCTGCTGG+TGG | + | chr1.3:2141566-2141585 | MS.gene27013:CDS | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | + | chr1.3:2141409-2141428 | MS.gene27013:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | + | chr1.3:2141420-2141439 | MS.gene27013:CDS | 55.0% | |
| TGAGTTGTTGCTGCCGTTCG+CGG | - | chr1.3:2140742-2140761 | None:intergenic | 55.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | + | chr1.3:2140584-2140603 | MS.gene27013:CDS | 55.0% |
| ACCGCCGGTGAATTCAGCTC+CGG | - | chr1.3:2141416-2141435 | None:intergenic | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | + | chr1.3:2141412-2141431 | MS.gene27013:CDS | 60.0% | |
| CAGCTGCTAAACGCCGCGAA+CGG | + | chr1.3:2140726-2140745 | MS.gene27013:CDS | 60.0% | |
| CCAAATGCTGCTGCTGGTGG+TGG | + | chr1.3:2141569-2141588 | MS.gene27013:CDS | 60.0% | |
| CCACCACCAGCAGCAGCATT+TGG | - | chr1.3:2141572-2141591 | None:intergenic | 60.0% | |
| CGTTCGCGGCGTTTAGCAGC+TGG | - | chr1.3:2140728-2140747 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | - | chr1.3:2141413-2141432 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | + | chr1.3:2141584-2141603 | MS.gene27013:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | + | chr1.3:2141596-2141615 | MS.gene27013:CDS | 65.0% |
| GGCGAGGGTTCTTCCGGTGG+TGG | + | chr1.3:2141590-2141609 | MS.gene27013:CDS | 70.0% | |
| GGTGGCGAGGGTTCTTCCGG+TGG | + | chr1.3:2141587-2141606 | MS.gene27013:CDS | 70.0% | |
| TTCGCCACCGCTGCCACCAC+CGG | - | chr1.3:2141606-2141625 | None:intergenic | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | + | chr1.3:2141599-2141618 | MS.gene27013:CDS | 70.0% |
| !! | GCTGCTGCTGGTGGTGGCGA+GGG | + | chr1.3:2141575-2141594 | MS.gene27013:CDS | 70.0% |
| !! | TGCTGCTGCTGGTGGTGGCG+AGG | + | chr1.3:2141574-2141593 | MS.gene27013:CDS | 70.0% |
| ! | GGTGGTGGCAGCGGTGGCGA+AGG | + | chr1.3:2141605-2141624 | MS.gene27013:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2140572 | 2141757 | 2140572 | ID=MS.gene27013 |
| chr1.3 | mRNA | 2140572 | 2141757 | 2140572 | ID=MS.gene27013.t1;Parent=MS.gene27013 |
| chr1.3 | exon | 2140572 | 2140893 | 2140572 | ID=MS.gene27013.t1.exon1;Parent=MS.gene27013.t1 |
| chr1.3 | CDS | 2140572 | 2140893 | 2140572 | ID=cds.MS.gene27013.t1;Parent=MS.gene27013.t1 |
| chr1.3 | exon | 2141390 | 2141757 | 2141390 | ID=MS.gene27013.t1.exon2;Parent=MS.gene27013.t1 |
| chr1.3 | CDS | 2141390 | 2141757 | 2141390 | ID=cds.MS.gene27013.t1;Parent=MS.gene27013.t1 |
| Gene Sequence |
| Protein sequence |
