Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27036.t1 | XP_003589390.1 | 95.8 | 520 | 20 | 1 | 1 | 518 | 36 | 555 | 5.50E-248 | 866.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27036.t1 | Q04088 | 40.0 | 170 | 98 | 1 | 305 | 474 | 156 | 321 | 1.7e-16 | 89.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27036.t1 | G7I6G4 | 95.8 | 520 | 20 | 1 | 1 | 518 | 36 | 555 | 4.0e-248 | 866.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene27036.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27036.t1 | MTR_1g023690 | 96.731 | 520 | 15 | 1 | 1 | 518 | 36 | 555 | 0.0 | 1024 |
MS.gene27036.t1 | MTR_4g072090 | 49.485 | 485 | 177 | 19 | 7 | 469 | 41 | 479 | 3.64e-111 | 339 |
MS.gene27036.t1 | MTR_4g072090 | 48.889 | 450 | 162 | 19 | 7 | 434 | 41 | 444 | 7.88e-98 | 303 |
MS.gene27036.t1 | MTR_6g034945 | 47.964 | 221 | 94 | 8 | 266 | 478 | 74 | 281 | 2.85e-44 | 159 |
MS.gene27036.t1 | MTR_2g099050 | 60.000 | 140 | 53 | 2 | 305 | 442 | 175 | 313 | 2.15e-41 | 154 |
MS.gene27036.t1 | MTR_3g094020 | 54.777 | 157 | 67 | 2 | 333 | 486 | 91 | 246 | 1.81e-40 | 148 |
MS.gene27036.t1 | MTR_5g075390 | 56.944 | 144 | 52 | 2 | 305 | 448 | 124 | 257 | 1.81e-39 | 147 |
MS.gene27036.t1 | MTR_3g467120 | 52.486 | 181 | 78 | 4 | 305 | 483 | 138 | 312 | 2.32e-39 | 147 |
MS.gene27036.t1 | MTR_2g090900 | 51.020 | 98 | 44 | 2 | 349 | 444 | 190 | 285 | 2.26e-18 | 86.7 |
MS.gene27036.t1 | MTR_4g079500 | 50.000 | 98 | 45 | 2 | 349 | 444 | 193 | 288 | 2.34e-18 | 86.7 |
MS.gene27036.t1 | MTR_2g090900 | 51.020 | 98 | 44 | 2 | 349 | 444 | 190 | 285 | 2.67e-18 | 86.7 |
MS.gene27036.t1 | MTR_0405s0060 | 65.517 | 58 | 20 | 0 | 324 | 381 | 98 | 155 | 7.85e-16 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27036.t1 | AT4G38900 | 45.309 | 501 | 184 | 22 | 12 | 470 | 59 | 511 | 1.26e-99 | 311 |
MS.gene27036.t1 | AT4G38900 | 45.309 | 501 | 184 | 22 | 12 | 470 | 59 | 511 | 1.26e-99 | 311 |
MS.gene27036.t1 | AT4G38900 | 44.773 | 507 | 184 | 23 | 12 | 470 | 59 | 517 | 6.13e-97 | 304 |
MS.gene27036.t1 | AT2G21230 | 41.866 | 461 | 206 | 15 | 44 | 475 | 74 | 501 | 5.76e-80 | 259 |
MS.gene27036.t1 | AT2G21230 | 41.866 | 461 | 206 | 15 | 44 | 475 | 74 | 501 | 5.76e-80 | 259 |
MS.gene27036.t1 | AT2G21230 | 40.899 | 467 | 208 | 16 | 44 | 475 | 74 | 507 | 1.31e-76 | 250 |
MS.gene27036.t1 | AT2G21230 | 42.195 | 410 | 181 | 14 | 44 | 430 | 74 | 450 | 3.29e-72 | 237 |
MS.gene27036.t1 | AT1G43700 | 47.549 | 204 | 87 | 6 | 265 | 448 | 89 | 292 | 1.61e-42 | 155 |
MS.gene27036.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 305 | 474 | 156 | 321 | 3.26e-41 | 152 |
MS.gene27036.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 305 | 474 | 156 | 321 | 9.70e-41 | 151 |
MS.gene27036.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 305 | 474 | 156 | 321 | 9.70e-41 | 151 |
MS.gene27036.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 305 | 474 | 156 | 321 | 9.70e-41 | 151 |
MS.gene27036.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 305 | 474 | 156 | 321 | 9.70e-41 | 151 |
MS.gene27036.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 305 | 474 | 156 | 321 | 9.70e-41 | 151 |
MS.gene27036.t1 | AT2G31370 | 53.529 | 170 | 75 | 1 | 305 | 474 | 156 | 321 | 9.70e-41 | 151 |
MS.gene27036.t1 | AT2G40620 | 49.505 | 202 | 77 | 4 | 302 | 490 | 112 | 301 | 1.07e-40 | 150 |
MS.gene27036.t1 | AT1G06070 | 56.494 | 154 | 56 | 3 | 299 | 442 | 150 | 302 | 3.49e-40 | 150 |
MS.gene27036.t1 | AT1G06850 | 51.634 | 153 | 72 | 1 | 321 | 471 | 117 | 269 | 2.34e-38 | 143 |
MS.gene27036.t1 | AT2G13150 | 36.788 | 193 | 111 | 5 | 263 | 453 | 71 | 254 | 6.36e-29 | 115 |
MS.gene27036.t1 | AT2G12940 | 35.676 | 185 | 110 | 4 | 261 | 445 | 68 | 243 | 3.89e-28 | 114 |
MS.gene27036.t1 | AT2G12900 | 38.760 | 129 | 71 | 1 | 322 | 442 | 80 | 208 | 3.23e-23 | 99.8 |
MS.gene27036.t1 | AT1G06850 | 60.241 | 83 | 31 | 1 | 321 | 401 | 117 | 199 | 1.21e-21 | 94.4 |
MS.gene27036.t1 | AT3G58120 | 51.546 | 97 | 43 | 2 | 350 | 444 | 202 | 296 | 6.17e-19 | 88.6 |
MS.gene27036.t1 | AT2G42380 | 50.515 | 97 | 44 | 2 | 350 | 444 | 186 | 280 | 2.75e-18 | 86.3 |
MS.gene27036.t1 | AT2G42380 | 51.190 | 84 | 37 | 2 | 350 | 431 | 186 | 267 | 8.89e-16 | 78.2 |
MS.gene27036.t1 | AT3G58120 | 52.439 | 82 | 35 | 2 | 350 | 429 | 202 | 281 | 1.78e-15 | 77.4 |
MS.gene27036.t1 | AT2G21235 | 32.995 | 197 | 90 | 5 | 347 | 507 | 356 | 546 | 2.88e-15 | 79.0 |
MS.gene27036.t1 | AT2G42380 | 46.392 | 97 | 37 | 3 | 350 | 444 | 186 | 269 | 1.30e-12 | 69.3 |
MS.gene27036.t1 | AT1G58110 | 43.158 | 95 | 49 | 1 | 348 | 442 | 232 | 321 | 6.05e-11 | 64.7 |
MS.gene27036.t1 | AT1G58110 | 43.158 | 95 | 49 | 1 | 348 | 442 | 232 | 321 | 6.05e-11 | 64.7 |
Find 143 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAAACTCCATGCTGATTTC+TGG | 0.095023 | 1.1:+1170452 | None:intergenic |
TGAATTCTCTTCTAGGATTT+TGG | 0.159961 | 1.1:-1170242 | MS.gene27036:intron |
TTAGGTGATAAACTGGTATT+AGG | 0.185148 | 1.1:+1171343 | None:intergenic |
GTTTAGTGCTTACATGAATT+TGG | 0.199161 | 1.1:-1170804 | MS.gene27036:CDS |
GATCGTCGGAATTTGGTTTC+TGG | 0.214069 | 1.1:-1170953 | MS.gene27036:CDS |
ATGGACGATGGCTTGGATTT+TGG | 0.220488 | 1.1:-1171142 | MS.gene27036:CDS |
TCTAGCAGTGATTCGCCTTT+AGG | 0.230921 | 1.1:-1171037 | MS.gene27036:CDS |
GAGATTGTGGAGGCATAAAT+TGG | 0.250520 | 1.1:+1171302 | None:intergenic |
GATGATACACACCTGTAATT+TGG | 0.266445 | 1.1:+1170105 | None:intergenic |
CCTGAAAATCACAAAAGTTC+TGG | 0.271067 | 1.1:-1171394 | MS.gene27036:CDS |
GTCTGCCCTCTCAGGTCTTA+TGG | 0.290824 | 1.1:-1168830 | MS.gene27036:CDS |
AATCACAAAAGTTCTGGTTT+TGG | 0.303027 | 1.1:-1171388 | MS.gene27036:CDS |
TGTCAGTGATCGTCGGAATT+TGG | 0.310184 | 1.1:-1170960 | MS.gene27036:CDS |
TTGGCTGCTGATGCTGCGCC+TGG | 0.311111 | 1.1:+1168776 | None:intergenic |
CTAGCAGTGATTCGCCTTTA+GGG | 0.324253 | 1.1:-1171036 | MS.gene27036:CDS |
GATGAAATACATTTCTGAAT+TGG | 0.329479 | 1.1:-1170182 | MS.gene27036:CDS |
GACTGTGTTGATGGGTTTAG+AGG | 0.332730 | 1.1:-1170878 | MS.gene27036:CDS |
TACTCAGTTTACCAAATTAC+AGG | 0.335238 | 1.1:-1170116 | MS.gene27036:intron |
GATAAACTGGTATTAGGGTT+AGG | 0.348576 | 1.1:+1171349 | None:intergenic |
CCAGAAATCAGCATGGAGTT+TGG | 0.352422 | 1.1:-1170452 | MS.gene27036:CDS |
GGGTTCGAAAGATGTTTCTA+TGG | 0.361008 | 1.1:-1171161 | MS.gene27036:CDS |
CAAATTGAGGCTTCAATCCT+TGG | 0.361103 | 1.1:-1169928 | MS.gene27036:CDS |
TTCGAACCCGATTCCGAAAA+GGG | 0.372318 | 1.1:+1171175 | None:intergenic |
GGAGTCAAGAGGAGTTCTAA+TGG | 0.374634 | 1.1:-1170623 | MS.gene27036:CDS |
TAGTTTCTGTCTGAAGAGTT+TGG | 0.377481 | 1.1:+1170149 | None:intergenic |
TGATGGTTTAGGTGATAAAC+TGG | 0.388036 | 1.1:+1171336 | None:intergenic |
CACAATCTCAAACTCATTCC+AGG | 0.390554 | 1.1:-1171288 | MS.gene27036:CDS |
AAGGATAGGGACTGTGTTGA+TGG | 0.391348 | 1.1:-1170887 | MS.gene27036:CDS |
TGGAAATTTCTAAGCTGGTT+TGG | 0.392467 | 1.1:+1168757 | None:intergenic |
GGATAAGGAGATGATGGTTT+AGG | 0.394908 | 1.1:+1171325 | None:intergenic |
GCCGATTCAGTTGGTGTTGA+AGG | 0.397394 | 1.1:-1170906 | MS.gene27036:CDS |
GGGTTTGAACTTACATGATA+AGG | 0.398012 | 1.1:+1171196 | None:intergenic |
CGTGTAAATGTGAAAGGAAT+AGG | 0.399807 | 1.1:-1170689 | MS.gene27036:CDS |
TTCTTACCTCTTTGCACGCT+TGG | 0.401343 | 1.1:+1170352 | None:intergenic |
ACAGGAGATGAAGAAAATAA+TGG | 0.405735 | 1.1:-1170411 | MS.gene27036:CDS |
TCTTACCTCTTTGCACGCTT+GGG | 0.408680 | 1.1:+1170353 | None:intergenic |
TATTAATCAACAAATGTTCC+AGG | 0.413163 | 1.1:-1168794 | MS.gene27036:CDS |
GGTTTGAACTTACATGATAA+GGG | 0.413641 | 1.1:+1171197 | None:intergenic |
AGATTGTGGAGGCATAAATT+GGG | 0.419988 | 1.1:+1171303 | None:intergenic |
AGAGAATGATGGAGCTGAAA+TGG | 0.422683 | 1.1:-1170834 | MS.gene27036:CDS |
TGATTCGCCTTTAGGGATAT+CGG | 0.426575 | 1.1:-1171029 | MS.gene27036:CDS |
TTTCGAACCCGATTCCGAAA+AGG | 0.436816 | 1.1:+1171174 | None:intergenic |
ATTGTCTTCCGCCTCGTAAA+GGG | 0.438192 | 1.1:-1171069 | MS.gene27036:CDS |
CATAAGCTTCCTCCTTTACA+AGG | 0.439342 | 1.1:-1170524 | MS.gene27036:CDS |
TGCCATTCTGATGCTTCGAT+TGG | 0.443341 | 1.1:+1168662 | None:intergenic |
TTTAGAGGAGAGAGTTTCGA+TGG | 0.447218 | 1.1:-1170863 | MS.gene27036:CDS |
TGTTTCTATGGACGATGGCT+TGG | 0.448923 | 1.1:-1171149 | MS.gene27036:CDS |
GAGGAGAGAGTTTCGATGGG+AGG | 0.451918 | 1.1:-1170859 | MS.gene27036:CDS |
GGCGGAGAGTCTGCCCTCTC+AGG | 0.456637 | 1.1:-1168838 | MS.gene27036:CDS |
GCCGCAAAACAGCGTCTCTC+AGG | 0.456659 | 1.1:-1168734 | MS.gene27036:CDS |
TAGGTGATAAACTGGTATTA+GGG | 0.460276 | 1.1:+1171344 | None:intergenic |
GGAGGCATAAATTGGGGATA+AGG | 0.460553 | 1.1:+1171310 | None:intergenic |
TTCAACCGTCTTCGAACCAC+TGG | 0.466140 | 1.1:+1170736 | None:intergenic |
TCCTTCAACACCAACTGAAT+CGG | 0.468786 | 1.1:+1170905 | None:intergenic |
GCGGCTGGAAATTTCTAAGC+TGG | 0.471848 | 1.1:+1168752 | None:intergenic |
CAGTTGGGACTGTTGTTCCA+AGG | 0.474662 | 1.1:+1169911 | None:intergenic |
CATTGTCTTCCGCCTCGTAA+AGG | 0.477811 | 1.1:-1171070 | MS.gene27036:CDS |
CTACCATCCATTGAATTGCT+AGG | 0.480737 | 1.1:+1170482 | None:intergenic |
AATTGGGGATAAGGAGATGA+TGG | 0.483937 | 1.1:+1171319 | None:intergenic |
ATAAACTGGTATTAGGGTTA+GGG | 0.484174 | 1.1:+1171350 | None:intergenic |
TGTTAACTCTGTGCCTCAGC+TGG | 0.484237 | 1.1:-1171002 | MS.gene27036:CDS |
ATCAGCATGGAGTTTGGAAA+TGG | 0.484264 | 1.1:-1170446 | MS.gene27036:CDS |
TTGCTAGGCGAGTGTTGACC+AGG | 0.493979 | 1.1:+1170497 | None:intergenic |
AGACTTTGAATGGCGAAGTC+CGG | 0.501336 | 1.1:-1168888 | MS.gene27036:CDS |
ACTCAATGGTGGCAAAGAAA+AGG | 0.504888 | 1.1:+1171231 | None:intergenic |
TTCAGTTGGTGTTGAAGGAT+AGG | 0.505836 | 1.1:-1170901 | MS.gene27036:CDS |
ATGCATACCATCTTTCAGTT+GGG | 0.510205 | 1.1:+1169896 | None:intergenic |
ACATAGGAGAAGTTACTCAT+TGG | 0.510819 | 1.1:-1170579 | MS.gene27036:CDS |
TTAGAGGAGAGAGTTTCGAT+GGG | 0.511374 | 1.1:-1170862 | MS.gene27036:CDS |
CTGGAATGAGTTTGAGATTG+TGG | 0.518906 | 1.1:+1171289 | None:intergenic |
GGGGAAGGGGAAGGACTCAA+TGG | 0.522243 | 1.1:+1171217 | None:intergenic |
TGTGAAAGGAATAGGTGCTA+AGG | 0.524307 | 1.1:-1170681 | MS.gene27036:CDS |
CATTTCTGAATTGGAGCAGA+AGG | 0.526293 | 1.1:-1170173 | MS.gene27036:CDS |
AGACACACTGTAGCAGAACT+AGG | 0.526862 | 1.1:-1168859 | MS.gene27036:CDS |
CATGCATACCATCTTTCAGT+TGG | 0.528845 | 1.1:+1169895 | None:intergenic |
GGGTGCGAGTTCAAGCTGTT+CGG | 0.530451 | 1.1:-1170660 | MS.gene27036:CDS |
GGTTAGGCGAAGGTGCATGA+TGG | 0.530722 | 1.1:+1171116 | None:intergenic |
TCAGTTGGTGTTGAAGGATA+GGG | 0.533089 | 1.1:-1170900 | MS.gene27036:CDS |
GTATTAGGGTTAGGGTATGA+AGG | 0.535303 | 1.1:+1171358 | None:intergenic |
ACAAATTCCGATATCCCTAA+AGG | 0.537853 | 1.1:+1171022 | None:intergenic |
GTTAGGCGAAGGTGCATGAT+GGG | 0.538166 | 1.1:+1171117 | None:intergenic |
AACTTACATGATAAGGGGAA+GGG | 0.539958 | 1.1:+1171203 | None:intergenic |
CGCGGTCATGCTGTTCAACA+TGG | 0.545730 | 1.1:-1171094 | MS.gene27036:CDS |
ACACTCGCCTAGCAATTCAA+TGG | 0.545737 | 1.1:-1170489 | MS.gene27036:CDS |
CGTCGGAATTTGGTTTCTGG+AGG | 0.548514 | 1.1:-1170950 | MS.gene27036:CDS |
GAAGGGGAAGGACTCAATGG+TGG | 0.557252 | 1.1:+1171220 | None:intergenic |
CCTCCTTTACAAGGTCGACC+TGG | 0.557576 | 1.1:-1170515 | MS.gene27036:CDS |
CAACAGTCCCAACTGAAAGA+TGG | 0.557734 | 1.1:-1169903 | MS.gene27036:intron |
TCAATCAGCTGCTCGCTCAA+AGG | 0.558910 | 1.1:-1170212 | MS.gene27036:CDS |
ACTTCTCCTATGTCGACCAC+TGG | 0.561188 | 1.1:+1170589 | None:intergenic |
GAACTTACATGATAAGGGGA+AGG | 0.561647 | 1.1:+1171202 | None:intergenic |
ACTTACATGATAAGGGGAAG+GGG | 0.562315 | 1.1:+1171204 | None:intergenic |
AGGATAGGGACTGTGTTGAT+GGG | 0.565060 | 1.1:-1170886 | MS.gene27036:CDS |
AGAGGAGGGAAGGAGTCAAG+AGG | 0.565709 | 1.1:-1170634 | MS.gene27036:CDS |
GCTCTGAATGAGACTTTGAA+TGG | 0.567061 | 1.1:-1168898 | MS.gene27036:CDS |
CTACAGTGTGTCTTAAGCGC+CGG | 0.567559 | 1.1:+1168869 | None:intergenic |
TTCCAATCGAAGCATCAGAA+TGG | 0.567958 | 1.1:-1168664 | MS.gene27036:CDS |
GATTGTGGAGGCATAAATTG+GGG | 0.570685 | 1.1:+1171304 | None:intergenic |
TTGCTCCCAGTGGTCGACAT+AGG | 0.574211 | 1.1:-1170595 | MS.gene27036:CDS |
GAGAGTCGTGTAAATGTGAA+AGG | 0.575120 | 1.1:-1170695 | MS.gene27036:CDS |
AGAATAAAGAGTACAAATTG+AGG | 0.575659 | 1.1:-1169941 | MS.gene27036:CDS |
AGCTGAGACGTCACCAGCTG+AGG | 0.575859 | 1.1:+1170989 | None:intergenic |
GTTTCTGGAGGAGAGAAACC+TGG | 0.577894 | 1.1:-1170938 | MS.gene27036:CDS |
GCATGACCGCGGTTAGGCGA+AGG | 0.578882 | 1.1:+1171106 | None:intergenic |
TGTTCGGATGAGAGGAGGGA+AGG | 0.581391 | 1.1:-1170644 | MS.gene27036:CDS |
TGACCAGGTCGACCTTGTAA+AGG | 0.581765 | 1.1:+1170512 | None:intergenic |
GTTCAAGCTGTTCGGATGAG+AGG | 0.582599 | 1.1:-1170652 | MS.gene27036:CDS |
GATGGGAGGAAAGAGAATGA+TGG | 0.583007 | 1.1:-1170845 | MS.gene27036:CDS |
TTAGGGTTAGGGTATGAAGG+TGG | 0.584414 | 1.1:+1171361 | None:intergenic |
TTCCGCCTCGTAAAGGGCAT+AGG | 0.587282 | 1.1:-1171063 | MS.gene27036:CDS |
TGAACAGCATGACCGCGGTT+AGG | 0.587550 | 1.1:+1171100 | None:intergenic |
ACATGATAAGGGGAAGGGGA+AGG | 0.589634 | 1.1:+1171208 | None:intergenic |
GTGAAAGGAATAGGTGCTAA+GGG | 0.589966 | 1.1:-1170680 | MS.gene27036:CDS |
CAAGCTGTTCGGATGAGAGG+AGG | 0.593383 | 1.1:-1170649 | MS.gene27036:CDS |
CGCCTCGTAAAGGGCATAGG+CGG | 0.597353 | 1.1:-1171060 | MS.gene27036:CDS |
AGTAGGTTGTGACAAAGACC+TGG | 0.598554 | 1.1:+1171270 | None:intergenic |
TCGCCTAGCAATTCAATGGA+TGG | 0.602631 | 1.1:-1170485 | MS.gene27036:CDS |
AAATGGTGAATTCAGCTCAC+AGG | 0.605226 | 1.1:-1170429 | MS.gene27036:CDS |
TCGAACCCGATTCCGAAAAG+GGG | 0.606202 | 1.1:+1171176 | None:intergenic |
TTATGAGAAGCCGATTCAGT+TGG | 0.606692 | 1.1:-1170915 | MS.gene27036:CDS |
TGAATCGGCTTCTCATAACC+AGG | 0.610622 | 1.1:+1170920 | None:intergenic |
GTTTGAACTTACATGATAAG+GGG | 0.611900 | 1.1:+1171198 | None:intergenic |
CAGCTGCTCGCTCAAAGGAG+CGG | 0.613324 | 1.1:-1170207 | MS.gene27036:CDS |
AAAGATGTTTCTATGGACGA+TGG | 0.616437 | 1.1:-1171154 | MS.gene27036:CDS |
CTTCTCCTATGTCGACCACT+GGG | 0.616721 | 1.1:+1170590 | None:intergenic |
TCGAGCCATAAGACCTGAGA+GGG | 0.619641 | 1.1:+1168825 | None:intergenic |
AAGCTGTTCGGATGAGAGGA+GGG | 0.619898 | 1.1:-1170648 | MS.gene27036:CDS |
CCAGGTCGACCTTGTAAAGG+AGG | 0.621909 | 1.1:+1170515 | None:intergenic |
CAGAACCAGTGGTTCGAAGA+CGG | 0.626425 | 1.1:-1170741 | MS.gene27036:CDS |
TAGTGAGTGTCAGTGATCGT+CGG | 0.631999 | 1.1:-1170967 | MS.gene27036:CDS |
TTACTGCAAACATTATGCAG+TGG | 0.632905 | 1.1:+1168636 | None:intergenic |
TAAAACACCAGAAATCAGCA+TGG | 0.660292 | 1.1:-1170459 | MS.gene27036:CDS |
CGCCTATGCCCTTTACGAGG+CGG | 0.666230 | 1.1:+1171061 | None:intergenic |
ATGGAAGATAGCAGAACCAG+TGG | 0.676860 | 1.1:-1170752 | MS.gene27036:CDS |
GACCGCCTATGCCCTTTACG+AGG | 0.680484 | 1.1:+1171058 | None:intergenic |
CTGATCCCAAGCGTGCAAAG+AGG | 0.685194 | 1.1:-1170358 | MS.gene27036:intron |
CATGCACCTTCGCCTAACCG+CGG | 0.696591 | 1.1:-1171112 | MS.gene27036:CDS |
TAAACTTGCTGAAATTGCTG+CGG | 0.696854 | 1.1:-1170381 | MS.gene27036:CDS |
GAATGAGTTTGAGATTGTGG+AGG | 0.705083 | 1.1:+1171292 | None:intergenic |
GTCGAGCCATAAGACCTGAG+AGG | 0.706228 | 1.1:+1168824 | None:intergenic |
AATGGAGATATTGCTCCCAG+TGG | 0.710736 | 1.1:-1170605 | MS.gene27036:CDS |
CATGTTGAACAGCATGACCG+CGG | 0.717359 | 1.1:+1171095 | None:intergenic |
CACACTGTAGCAGAACTAGG+CGG | 0.776415 | 1.1:-1168856 | MS.gene27036:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCAATATTAAAATTTTCAA+TGG | + | chr1.1:1169504-1169523 | None:intergenic | 10.0% |
!!! | GAATATAGTAATTCAAATTT+TGG | - | chr1.1:1170395-1170414 | MS.gene27036:CDS | 15.0% |
!! | AATTCACAAACTTAAGAAAA+AGG | + | chr1.1:1169989-1170008 | None:intergenic | 20.0% |
!! | CTTAATACATGATAGTAAAA+TGG | + | chr1.1:1170685-1170704 | None:intergenic | 20.0% |
!! | GAATCAATAGATAAAAAAGT+AGG | + | chr1.1:1168801-1168820 | None:intergenic | 20.0% |
!! | TAACTAGAACATAAAGTAAA+AGG | + | chr1.1:1170190-1170209 | None:intergenic | 20.0% |
!! | TGAATACATAGCTAAATATT+TGG | + | chr1.1:1171113-1171132 | None:intergenic | 20.0% |
!!! | ATATACTGTATGACAAATTT+TGG | - | chr1.1:1170367-1170386 | MS.gene27036:CDS | 20.0% |
!!! | ATATTTAGATGGATTTTATG+TGG | - | chr1.1:1170328-1170347 | MS.gene27036:intron | 20.0% |
!!! | CATTTTACTATCATGTATTA+AGG | - | chr1.1:1170683-1170702 | MS.gene27036:CDS | 20.0% |
!!! | TGTGATTTTCTATATTTAGA+TGG | - | chr1.1:1170317-1170336 | MS.gene27036:intron | 20.0% |
! | AAGATCAAAAAATATGTTGC+TGG | + | chr1.1:1171003-1171022 | None:intergenic | 25.0% |
! | CAAACTGTTTGAATGTAATA+TGG | - | chr1.1:1170568-1170587 | MS.gene27036:CDS | 25.0% |
! | GAACATAAAGTAAAAGGAAT+AGG | + | chr1.1:1170184-1170203 | None:intergenic | 25.0% |
! | GATGAAATACATTTCTGAAT+TGG | - | chr1.1:1169869-1169888 | MS.gene27036:intron | 25.0% |
! | TAAATGTTGAATTCTCTTCT+AGG | - | chr1.1:1169802-1169821 | MS.gene27036:intron | 25.0% |
! | TATTAATCAACAAATGTTCC+AGG | - | chr1.1:1171257-1171276 | MS.gene27036:CDS | 25.0% |
! | TTACCTATGAATCTCTTTAT+CGG | - | chr1.1:1170912-1170931 | MS.gene27036:CDS | 25.0% |
! | TTCCAAAAAAATAGATTGCA+AGG | + | chr1.1:1170225-1170244 | None:intergenic | 25.0% |
!! | AGAATAAAGAGTACAAATTG+AGG | - | chr1.1:1170110-1170129 | MS.gene27036:intron | 25.0% |
!!! | TTCCTTGCAATCTATTTTTT+TGG | - | chr1.1:1170220-1170239 | MS.gene27036:CDS | 25.0% |
!!! | TTGTATATGCAGTTTTAAAG+AGG | + | chr1.1:1170551-1170570 | None:intergenic | 25.0% |
!!! | TTTTTTCCAAAAGAAAGACA+CGG | + | chr1.1:1169748-1169767 | None:intergenic | 25.0% |
AAAAGAAAGACACGGAAATA+TGG | + | chr1.1:1169740-1169759 | None:intergenic | 30.0% | |
AAAGAAAGACACGGAAATAT+GGG | + | chr1.1:1169739-1169758 | None:intergenic | 30.0% | |
ACAGGAGATGAAGAAAATAA+TGG | - | chr1.1:1169640-1169659 | MS.gene27036:intron | 30.0% | |
ATAAACTGGTATTAGGGTTA+GGG | + | chr1.1:1168704-1168723 | None:intergenic | 30.0% | |
ATAGCAGCATACATGATATA+TGG | + | chr1.1:1170023-1170042 | None:intergenic | 30.0% | |
GGTTTGAACTTACATGATAA+GGG | + | chr1.1:1168857-1168876 | None:intergenic | 30.0% | |
GTTTAGTGCTTACATGAATT+TGG | - | chr1.1:1169247-1169266 | MS.gene27036:intron | 30.0% | |
GTTTGAACTTACATGATAAG+GGG | + | chr1.1:1168856-1168875 | None:intergenic | 30.0% | |
TACTCAGTTTACCAAATTAC+AGG | - | chr1.1:1169935-1169954 | MS.gene27036:CDS | 30.0% | |
TAGGTGATAAACTGGTATTA+GGG | + | chr1.1:1168710-1168729 | None:intergenic | 30.0% | |
TTAGGTGATAAACTGGTATT+AGG | + | chr1.1:1168711-1168730 | None:intergenic | 30.0% | |
! | ATATTTCCGTGTCTTTCTTT+TGG | - | chr1.1:1169739-1169758 | MS.gene27036:intron | 30.0% |
! | TATGCACAACATGAGTTTTT+CGG | - | chr1.1:1169274-1169293 | MS.gene27036:intron | 30.0% |
! | TCTATAAAGTTGATCCCATA+AGG | + | chr1.1:1170642-1170661 | None:intergenic | 30.0% |
!! | AAAACCAAAAGTACTATGTC+AGG | + | chr1.1:1170479-1170498 | None:intergenic | 30.0% |
!!! | AATCACAAAAGTTCTGGTTT+TGG | - | chr1.1:1168663-1168682 | MS.gene27036:CDS | 30.0% |
!!! | GACATAGTACTTTTGGTTTT+TGG | - | chr1.1:1170479-1170498 | MS.gene27036:CDS | 30.0% |
!!! | TGAATTCTCTTCTAGGATTT+TGG | - | chr1.1:1169809-1169828 | MS.gene27036:intron | 30.0% |
AACTTACATGATAAGGGGAA+GGG | + | chr1.1:1168851-1168870 | None:intergenic | 35.0% | |
ACAAATTCCGATATCCCTAA+AGG | + | chr1.1:1169032-1169051 | None:intergenic | 35.0% | |
ACATAGGAGAAGTTACTCAT+TGG | - | chr1.1:1169472-1169491 | MS.gene27036:intron | 35.0% | |
ATGCATACCATCTTTCAGTT+GGG | + | chr1.1:1170158-1170177 | None:intergenic | 35.0% | |
ATGCCGATAAAGAGATTCAT+AGG | + | chr1.1:1170918-1170937 | None:intergenic | 35.0% | |
ATTCAGTACAATACGGTACT+TGG | + | chr1.1:1170508-1170527 | None:intergenic | 35.0% | |
ATTCTGCTATGCTATAGTGT+CGG | - | chr1.1:1170873-1170892 | MS.gene27036:CDS | 35.0% | |
CAGAGATCATTGAACAAGAT+TGG | + | chr1.1:1170429-1170448 | None:intergenic | 35.0% | |
CATATTGTCCTGTCAAATAG+CGG | + | chr1.1:1170805-1170824 | None:intergenic | 35.0% | |
CCAAGAGATTCAGTACAATA+CGG | + | chr1.1:1170515-1170534 | None:intergenic | 35.0% | |
CCTGAAAATCACAAAAGTTC+TGG | - | chr1.1:1168657-1168676 | MS.gene27036:CDS | 35.0% | |
CGTGTAAATGTGAAAGGAAT+AGG | - | chr1.1:1169362-1169381 | MS.gene27036:intron | 35.0% | |
GATAAACTGGTATTAGGGTT+AGG | + | chr1.1:1168705-1168724 | None:intergenic | 35.0% | |
GATGATACACACCTGTAATT+TGG | + | chr1.1:1169949-1169968 | None:intergenic | 35.0% | |
GGGTTTGAACTTACATGATA+AGG | + | chr1.1:1168858-1168877 | None:intergenic | 35.0% | |
TAAAACACCAGAAATCAGCA+TGG | - | chr1.1:1169592-1169611 | MS.gene27036:intron | 35.0% | |
TAGTTTCTGTCTGAAGAGTT+TGG | + | chr1.1:1169905-1169924 | None:intergenic | 35.0% | |
TCAATTGCAGCACAAAATCA+AGG | + | chr1.1:1171076-1171095 | None:intergenic | 35.0% | |
TGATGGTTTAGGTGATAAAC+TGG | + | chr1.1:1168718-1168737 | None:intergenic | 35.0% | |
TGGAAATTTCTAAGCTGGTT+TGG | + | chr1.1:1171297-1171316 | None:intergenic | 35.0% | |
TTATTGCACTTGTCTACAGA+TGG | - | chr1.1:1170066-1170085 | MS.gene27036:intron | 35.0% | |
TTCAGTACAATACGGTACTT+GGG | + | chr1.1:1170507-1170526 | None:intergenic | 35.0% | |
! | AAAGATGTTTCTATGGACGA+TGG | - | chr1.1:1168897-1168916 | MS.gene27036:CDS | 35.0% |
! | AGATTGTGGAGGCATAAATT+GGG | + | chr1.1:1168751-1168770 | None:intergenic | 35.0% |
! | ATGCACAACATGAGTTTTTC+GGG | - | chr1.1:1169275-1169294 | MS.gene27036:intron | 35.0% |
! | CCAGAACTTTTGTGATTTTC+AGG | + | chr1.1:1168660-1168679 | None:intergenic | 35.0% |
! | TGTAAGTTCAAACCCCTTTT+CGG | - | chr1.1:1168863-1168882 | MS.gene27036:CDS | 35.0% |
!! | TAAACTTGCTGAAATTGCTG+CGG | - | chr1.1:1169670-1169689 | MS.gene27036:intron | 35.0% |
AAATGGTGAATTCAGCTCAC+AGG | - | chr1.1:1169622-1169641 | MS.gene27036:intron | 40.0% | |
AATTGGGGATAAGGAGATGA+TGG | + | chr1.1:1168735-1168754 | None:intergenic | 40.0% | |
ACTCAATGGTGGCAAAGAAA+AGG | + | chr1.1:1168823-1168842 | None:intergenic | 40.0% | |
ACTTACATGATAAGGGGAAG+GGG | + | chr1.1:1168850-1168869 | None:intergenic | 40.0% | |
AGGAATTACAGTGCTTCTGA+AGG | + | chr1.1:1171056-1171075 | None:intergenic | 40.0% | |
ATCAGCATGGAGTTTGGAAA+TGG | - | chr1.1:1169605-1169624 | MS.gene27036:intron | 40.0% | |
CAAATTGAGGCTTCAATCCT+TGG | - | chr1.1:1170123-1170142 | MS.gene27036:CDS | 40.0% | |
CAAGCCTTAGTCTACCTTAT+GGG | - | chr1.1:1170625-1170644 | MS.gene27036:CDS | 40.0% | |
CACAATCTCAAACTCATTCC+AGG | - | chr1.1:1168763-1168782 | MS.gene27036:CDS | 40.0% | |
CATAAGCTTCCTCCTTTACA+AGG | - | chr1.1:1169527-1169546 | MS.gene27036:intron | 40.0% | |
CATGCATACCATCTTTCAGT+TGG | + | chr1.1:1170159-1170178 | None:intergenic | 40.0% | |
CATTTCTGAATTGGAGCAGA+AGG | - | chr1.1:1169878-1169897 | MS.gene27036:intron | 40.0% | |
CCGTATTGTACTGAATCTCT+TGG | - | chr1.1:1170512-1170531 | MS.gene27036:CDS | 40.0% | |
CTACCATCCATTGAATTGCT+AGG | + | chr1.1:1169572-1169591 | None:intergenic | 40.0% | |
GAACTTACATGATAAGGGGA+AGG | + | chr1.1:1168852-1168871 | None:intergenic | 40.0% | |
GAGAGTCGTGTAAATGTGAA+AGG | - | chr1.1:1169356-1169375 | MS.gene27036:intron | 40.0% | |
GGAATTACAGTGCTTCTGAA+GGG | + | chr1.1:1171055-1171074 | None:intergenic | 40.0% | |
GTATTAGGGTTAGGGTATGA+AGG | + | chr1.1:1168696-1168715 | None:intergenic | 40.0% | |
GTCAGGCAGGAAGATTTAAA+AGG | + | chr1.1:1170462-1170481 | None:intergenic | 40.0% | |
GTGAAAGGAATAGGTGCTAA+GGG | - | chr1.1:1169371-1169390 | MS.gene27036:intron | 40.0% | |
TACTATAGCCGCTATTTGAC+AGG | - | chr1.1:1170794-1170813 | MS.gene27036:CDS | 40.0% | |
TCCTTCAACACCAACTGAAT+CGG | + | chr1.1:1169149-1169168 | None:intergenic | 40.0% | |
TGATCCCATAAGGTAGACTA+AGG | + | chr1.1:1170632-1170651 | None:intergenic | 40.0% | |
TGTGAAAGGAATAGGTGCTA+AGG | - | chr1.1:1169370-1169389 | MS.gene27036:intron | 40.0% | |
TTAGAGGAGAGAGTTTCGAT+GGG | - | chr1.1:1169189-1169208 | MS.gene27036:intron | 40.0% | |
TTCAGTGTTGTCAATCACAG+CGG | - | chr1.1:1170724-1170743 | MS.gene27036:CDS | 40.0% | |
TTTAGAGGAGAGAGTTTCGA+TGG | - | chr1.1:1169188-1169207 | MS.gene27036:intron | 40.0% | |
! | AGAGAATGATGGAGCTGAAA+TGG | - | chr1.1:1169217-1169236 | MS.gene27036:intron | 40.0% |
! | CTGGAATGAGTTTGAGATTG+TGG | + | chr1.1:1168765-1168784 | None:intergenic | 40.0% |
! | GAATGAGTTTGAGATTGTGG+AGG | + | chr1.1:1168762-1168781 | None:intergenic | 40.0% |
! | GAGATTGTGGAGGCATAAAT+TGG | + | chr1.1:1168752-1168771 | None:intergenic | 40.0% |
! | GATTGTGGAGGCATAAATTG+GGG | + | chr1.1:1168750-1168769 | None:intergenic | 40.0% |
! | GCTCTGAATGAGACTTTGAA+TGG | - | chr1.1:1171153-1171172 | MS.gene27036:CDS | 40.0% |
! | GGATAAGGAGATGATGGTTT+AGG | + | chr1.1:1168729-1168748 | None:intergenic | 40.0% |
! | GGGTTCGAAAGATGTTTCTA+TGG | - | chr1.1:1168890-1168909 | MS.gene27036:CDS | 40.0% |
! | TGATTCGCCTTTAGGGATAT+CGG | - | chr1.1:1169022-1169041 | MS.gene27036:intron | 40.0% |
! | TTATGAGAAGCCGATTCAGT+TGG | - | chr1.1:1169136-1169155 | MS.gene27036:intron | 40.0% |
! | TTCAAACCCCTTTTCGGAAT+CGG | - | chr1.1:1168869-1168888 | MS.gene27036:CDS | 40.0% |
! | TTCCAATCGAAGCATCAGAA+TGG | - | chr1.1:1171387-1171406 | MS.gene27036:CDS | 40.0% |
!! | TCAGTTGGTGTTGAAGGATA+GGG | - | chr1.1:1169151-1169170 | MS.gene27036:intron | 40.0% |
!! | TTATCGGCATTTTTCAGCAC+TGG | - | chr1.1:1170928-1170947 | MS.gene27036:CDS | 40.0% |
!! | TTCAGTTGGTGTTGAAGGAT+AGG | - | chr1.1:1169150-1169169 | MS.gene27036:intron | 40.0% |
!!! | CAACATGAGTTTTTCGGGTA+TGG | - | chr1.1:1169280-1169299 | MS.gene27036:intron | 40.0% |
AAGGATAGGGACTGTGTTGA+TGG | - | chr1.1:1169164-1169183 | MS.gene27036:intron | 45.0% | |
AATGGAGATATTGCTCCCAG+TGG | - | chr1.1:1169446-1169465 | MS.gene27036:intron | 45.0% | |
ACACTCGCCTAGCAATTCAA+TGG | - | chr1.1:1169562-1169581 | MS.gene27036:intron | 45.0% | |
AGACACACTGTAGCAGAACT+AGG | - | chr1.1:1171192-1171211 | MS.gene27036:CDS | 45.0% | |
AGACTTTGAATGGCGAAGTC+CGG | - | chr1.1:1171163-1171182 | MS.gene27036:CDS | 45.0% | |
AGTAGGTTGTGACAAAGACC+TGG | + | chr1.1:1168784-1168803 | None:intergenic | 45.0% | |
ATGGAAGATAGCAGAACCAG+TGG | - | chr1.1:1169299-1169318 | MS.gene27036:intron | 45.0% | |
ATTGTCTTCCGCCTCGTAAA+GGG | - | chr1.1:1168982-1169001 | MS.gene27036:intron | 45.0% | |
CAACAGTCCCAACTGAAAGA+TGG | - | chr1.1:1170148-1170167 | MS.gene27036:CDS | 45.0% | |
CAATCACAGCGGAAAGTAGT+GGG | - | chr1.1:1170735-1170754 | MS.gene27036:CDS | 45.0% | |
CCAAGCCTTAGTCTACCTTA+TGG | - | chr1.1:1170624-1170643 | MS.gene27036:CDS | 45.0% | |
CCAGAAATCAGCATGGAGTT+TGG | - | chr1.1:1169599-1169618 | MS.gene27036:intron | 45.0% | |
CCATAAGGTAGACTAAGGCT+TGG | + | chr1.1:1170627-1170646 | None:intergenic | 45.0% | |
CCTATAGCACTGTAGCATAG+CGG | + | chr1.1:1170772-1170791 | None:intergenic | 45.0% | |
CGCTATGCTACAGTGCTATA+GGG | - | chr1.1:1170770-1170789 | MS.gene27036:CDS | 45.0% | |
CTAGCAGTGATTCGCCTTTA+GGG | - | chr1.1:1169015-1169034 | MS.gene27036:intron | 45.0% | |
CTATAGCACTGTAGCATAGC+GGG | + | chr1.1:1170771-1170790 | None:intergenic | 45.0% | |
GATGGGAGGAAAGAGAATGA+TGG | - | chr1.1:1169206-1169225 | MS.gene27036:intron | 45.0% | |
GCTGTGATTGACAACACTGA+AGG | + | chr1.1:1170725-1170744 | None:intergenic | 45.0% | |
TAGTGAGTGTCAGTGATCGT+CGG | - | chr1.1:1169084-1169103 | MS.gene27036:intron | 45.0% | |
TCAATCACAGCGGAAAGTAG+TGG | - | chr1.1:1170734-1170753 | MS.gene27036:CDS | 45.0% | |
TCGCCTAGCAATTCAATGGA+TGG | - | chr1.1:1169566-1169585 | MS.gene27036:intron | 45.0% | |
TCTAGCAGTGATTCGCCTTT+AGG | - | chr1.1:1169014-1169033 | MS.gene27036:intron | 45.0% | |
TCTTACCTCTTTGCACGCTT+GGG | + | chr1.1:1169701-1169720 | None:intergenic | 45.0% | |
TGCCATTCTGATGCTTCGAT+TGG | + | chr1.1:1171392-1171411 | None:intergenic | 45.0% | |
TGTCAGTGATCGTCGGAATT+TGG | - | chr1.1:1169091-1169110 | MS.gene27036:intron | 45.0% | |
TTAGGGTTAGGGTATGAAGG+TGG | + | chr1.1:1168693-1168712 | None:intergenic | 45.0% | |
TTCGAACCCGATTCCGAAAA+GGG | + | chr1.1:1168879-1168898 | None:intergenic | 45.0% | |
TTCTTACCTCTTTGCACGCT+TGG | + | chr1.1:1169702-1169721 | None:intergenic | 45.0% | |
TTTCGAACCCGATTCCGAAA+AGG | + | chr1.1:1168880-1168899 | None:intergenic | 45.0% | |
! | AGGATAGGGACTGTGTTGAT+GGG | - | chr1.1:1169165-1169184 | MS.gene27036:intron | 45.0% |
! | CCTGCCTGACATAGTACTTT+TGG | - | chr1.1:1170472-1170491 | MS.gene27036:CDS | 45.0% |
! | GATCGTCGGAATTTGGTTTC+TGG | - | chr1.1:1169098-1169117 | MS.gene27036:intron | 45.0% |
! | GGAGGCATAAATTGGGGATA+AGG | + | chr1.1:1168744-1168763 | None:intergenic | 45.0% |
! | GGAGTCAAGAGGAGTTCTAA+TGG | - | chr1.1:1169428-1169447 | MS.gene27036:intron | 45.0% |
! | TCAAACCCCTTTTCGGAATC+GGG | - | chr1.1:1168870-1168889 | MS.gene27036:CDS | 45.0% |
! | TGAATCGGCTTCTCATAACC+AGG | + | chr1.1:1169134-1169153 | None:intergenic | 45.0% |
! | TGTTTCTATGGACGATGGCT+TGG | - | chr1.1:1168902-1168921 | MS.gene27036:intron | 45.0% |
! | TTACAGTGCTTCTGAAGGGA+TGG | + | chr1.1:1171051-1171070 | None:intergenic | 45.0% |
!! | ATGGACGATGGCTTGGATTT+TGG | - | chr1.1:1168909-1168928 | MS.gene27036:intron | 45.0% |
!! | CCAAAAGTACTATGTCAGGC+AGG | + | chr1.1:1170475-1170494 | None:intergenic | 45.0% |
!! | CCAAACTCCATGCTGATTTC+TGG | + | chr1.1:1169602-1169621 | None:intergenic | 45.0% |
!! | GACTGTGTTGATGGGTTTAG+AGG | - | chr1.1:1169173-1169192 | MS.gene27036:intron | 45.0% |
AAGCTGTTCGGATGAGAGGA+GGG | - | chr1.1:1169403-1169422 | MS.gene27036:intron | 50.0% | |
ACATGATAAGGGGAAGGGGA+AGG | + | chr1.1:1168846-1168865 | None:intergenic | 50.0% | |
ACTTCTCCTATGTCGACCAC+TGG | + | chr1.1:1169465-1169484 | None:intergenic | 50.0% | |
CACACTGTAGCAGAACTAGG+CGG | - | chr1.1:1171195-1171214 | MS.gene27036:CDS | 50.0% | |
CAGAACCAGTGGTTCGAAGA+CGG | - | chr1.1:1169310-1169329 | MS.gene27036:intron | 50.0% | |
CAGTTGGGACTGTTGTTCCA+AGG | + | chr1.1:1170143-1170162 | None:intergenic | 50.0% | |
CATGTTGAACAGCATGACCG+CGG | + | chr1.1:1168959-1168978 | None:intergenic | 50.0% | |
CATTGTCTTCCGCCTCGTAA+AGG | - | chr1.1:1168981-1169000 | MS.gene27036:intron | 50.0% | |
CCGCTATGCTACAGTGCTAT+AGG | - | chr1.1:1170769-1170788 | MS.gene27036:CDS | 50.0% | |
CTACAGTGTGTCTTAAGCGC+CGG | + | chr1.1:1171185-1171204 | None:intergenic | 50.0% | |
CTTCTCCTATGTCGACCACT+GGG | + | chr1.1:1169464-1169483 | None:intergenic | 50.0% | |
GCGGCTGGAAATTTCTAAGC+TGG | + | chr1.1:1171302-1171321 | None:intergenic | 50.0% | |
GTTCAAGCTGTTCGGATGAG+AGG | - | chr1.1:1169399-1169418 | MS.gene27036:intron | 50.0% | |
TCAATCAGCTGCTCGCTCAA+AGG | - | chr1.1:1169839-1169858 | MS.gene27036:intron | 50.0% | |
TCGAACCCGATTCCGAAAAG+GGG | + | chr1.1:1168878-1168897 | None:intergenic | 50.0% | |
TCGAGCCATAAGACCTGAGA+GGG | + | chr1.1:1171229-1171248 | None:intergenic | 50.0% | |
TGACCAGGTCGACCTTGTAA+AGG | + | chr1.1:1169542-1169561 | None:intergenic | 50.0% | |
TGTTAACTCTGTGCCTCAGC+TGG | - | chr1.1:1169049-1169068 | MS.gene27036:intron | 50.0% | |
TTCAACCGTCTTCGAACCAC+TGG | + | chr1.1:1169318-1169337 | None:intergenic | 50.0% | |
! | CGTCGGAATTTGGTTTCTGG+AGG | - | chr1.1:1169101-1169120 | MS.gene27036:intron | 50.0% |
! | GTTAGGCGAAGGTGCATGAT+GGG | + | chr1.1:1168937-1168956 | None:intergenic | 50.0% |
! | GTTTCTGGAGGAGAGAAACC+TGG | - | chr1.1:1169113-1169132 | MS.gene27036:intron | 50.0% |
!! | GCCGATTCAGTTGGTGTTGA+AGG | - | chr1.1:1169145-1169164 | MS.gene27036:intron | 50.0% |
!! | TCCTGAGAGACGCTGTTTTG+CGG | + | chr1.1:1171321-1171340 | None:intergenic | 50.0% |
AGAGGAGGGAAGGAGTCAAG+AGG | - | chr1.1:1169417-1169436 | MS.gene27036:intron | 55.0% | |
CAAGCTGTTCGGATGAGAGG+AGG | - | chr1.1:1169402-1169421 | MS.gene27036:intron | 55.0% | |
CCAGGTCGACCTTGTAAAGG+AGG | + | chr1.1:1169539-1169558 | None:intergenic | 55.0% | |
CCTCCTTTACAAGGTCGACC+TGG | - | chr1.1:1169536-1169555 | MS.gene27036:intron | 55.0% | |
CGCGGTCATGCTGTTCAACA+TGG | - | chr1.1:1168957-1168976 | MS.gene27036:intron | 55.0% | |
CTGATCCCAAGCGTGCAAAG+AGG | - | chr1.1:1169693-1169712 | MS.gene27036:intron | 55.0% | |
GAAGGGGAAGGACTCAATGG+TGG | + | chr1.1:1168834-1168853 | None:intergenic | 55.0% | |
GAGGAGAGAGTTTCGATGGG+AGG | - | chr1.1:1169192-1169211 | MS.gene27036:intron | 55.0% | |
GGGTGCGAGTTCAAGCTGTT+CGG | - | chr1.1:1169391-1169410 | MS.gene27036:intron | 55.0% | |
GTCGAGCCATAAGACCTGAG+AGG | + | chr1.1:1171230-1171249 | None:intergenic | 55.0% | |
GTCTGCCCTCTCAGGTCTTA+TGG | - | chr1.1:1171221-1171240 | MS.gene27036:CDS | 55.0% | |
TGAACAGCATGACCGCGGTT+AGG | + | chr1.1:1168954-1168973 | None:intergenic | 55.0% | |
TGTTCGGATGAGAGGAGGGA+AGG | - | chr1.1:1169407-1169426 | MS.gene27036:intron | 55.0% | |
TTGCTCCCAGTGGTCGACAT+AGG | - | chr1.1:1169456-1169475 | MS.gene27036:intron | 55.0% | |
! | CAGTGCTTCTGAAGGGATGG+TGG | + | chr1.1:1171048-1171067 | None:intergenic | 55.0% |
! | GCACTGTAGCATAGCGGGAT+TGG | + | chr1.1:1170766-1170785 | None:intergenic | 55.0% |
! | GGTTAGGCGAAGGTGCATGA+TGG | + | chr1.1:1168938-1168957 | None:intergenic | 55.0% |
! | TGCTTCTGAAGGGATGGTGG+TGG | + | chr1.1:1171045-1171064 | None:intergenic | 55.0% |
! | TTCCGCCTCGTAAAGGGCAT+AGG | - | chr1.1:1168988-1169007 | MS.gene27036:intron | 55.0% |
!! | TTGCTAGGCGAGTGTTGACC+AGG | + | chr1.1:1169557-1169576 | None:intergenic | 55.0% |
AGCTGAGACGTCACCAGCTG+AGG | + | chr1.1:1169065-1169084 | None:intergenic | 60.0% | |
CAGCTGCTCGCTCAAAGGAG+CGG | - | chr1.1:1169844-1169863 | MS.gene27036:intron | 60.0% | |
CATGCACCTTCGCCTAACCG+CGG | - | chr1.1:1168939-1168958 | MS.gene27036:intron | 60.0% | |
CGCCTATGCCCTTTACGAGG+CGG | + | chr1.1:1168993-1169012 | None:intergenic | 60.0% | |
GACCGCCTATGCCCTTTACG+AGG | + | chr1.1:1168996-1169015 | None:intergenic | 60.0% | |
GCCGCAAAACAGCGTCTCTC+AGG | - | chr1.1:1171317-1171336 | MS.gene27036:CDS | 60.0% | |
GGGGAAGGGGAAGGACTCAA+TGG | + | chr1.1:1168837-1168856 | None:intergenic | 60.0% | |
! | CGCCTCGTAAAGGGCATAGG+CGG | - | chr1.1:1168991-1169010 | MS.gene27036:intron | 60.0% |
!! | GAGAGACGCTGTTTTGCGGC+TGG | + | chr1.1:1171317-1171336 | None:intergenic | 60.0% |
GCATGACCGCGGTTAGGCGA+AGG | + | chr1.1:1168948-1168967 | None:intergenic | 65.0% | |
TTGGCTGCTGATGCTGCGCC+TGG | + | chr1.1:1171278-1171297 | None:intergenic | 65.0% | |
GGCGGAGAGTCTGCCCTCTC+AGG | - | chr1.1:1171213-1171232 | MS.gene27036:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 1168648 | 1171425 | 1168648 | ID=MS.gene27036 |
chr1.1 | mRNA | 1168648 | 1171425 | 1168648 | ID=MS.gene27036.t1;Parent=MS.gene27036 |
chr1.1 | exon | 1170359 | 1171425 | 1170359 | ID=MS.gene27036.t1.exon1;Parent=MS.gene27036.t1 |
chr1.1 | CDS | 1170359 | 1171425 | 1170359 | ID=cds.MS.gene27036.t1;Parent=MS.gene27036.t1 |
chr1.1 | exon | 1170117 | 1170249 | 1170117 | ID=MS.gene27036.t1.exon2;Parent=MS.gene27036.t1 |
chr1.1 | CDS | 1170117 | 1170249 | 1170117 | ID=cds.MS.gene27036.t1;Parent=MS.gene27036.t1 |
chr1.1 | exon | 1169904 | 1169988 | 1169904 | ID=MS.gene27036.t1.exon3;Parent=MS.gene27036.t1 |
chr1.1 | CDS | 1169904 | 1169988 | 1169904 | ID=cds.MS.gene27036.t1;Parent=MS.gene27036.t1 |
chr1.1 | exon | 1168648 | 1168919 | 1168648 | ID=MS.gene27036.t1.exon4;Parent=MS.gene27036.t1 |
chr1.1 | CDS | 1168648 | 1168919 | 1168648 | ID=cds.MS.gene27036.t1;Parent=MS.gene27036.t1 |
Gene Sequence |
Protein sequence |