Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27064.t1 | AFK49400.1 | 90.9 | 329 | 26 | 1 | 15 | 343 | 79 | 403 | 2.60E-153 | 551.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27064.t1 | G7I760 | 90.9 | 329 | 26 | 1 | 15 | 343 | 79 | 403 | 1.9e-153 | 551.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27064.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27064.t1 | MTR_1g024980 | 96.353 | 329 | 8 | 1 | 15 | 343 | 79 | 403 | 0.0 | 644 |
| MS.gene27064.t1 | MTR_3g072920 | 58.759 | 274 | 90 | 7 | 84 | 340 | 183 | 450 | 1.08e-106 | 320 |
| MS.gene27064.t1 | MTR_4g081420 | 50.833 | 240 | 105 | 3 | 111 | 340 | 200 | 436 | 4.98e-70 | 225 |
| MS.gene27064.t1 | MTR_3g463270 | 43.396 | 265 | 123 | 10 | 96 | 341 | 133 | 389 | 7.26e-59 | 194 |
| MS.gene27064.t1 | MTR_2g010860 | 44.304 | 237 | 115 | 6 | 116 | 340 | 145 | 376 | 1.10e-53 | 181 |
| MS.gene27064.t1 | MTR_2g010870 | 40.816 | 245 | 120 | 5 | 116 | 340 | 116 | 355 | 4.20e-49 | 169 |
| MS.gene27064.t1 | MTR_5g012220 | 40.097 | 207 | 100 | 7 | 138 | 341 | 105 | 290 | 9.89e-37 | 134 |
| MS.gene27064.t1 | MTR_4g101450 | 40.609 | 197 | 86 | 6 | 149 | 341 | 106 | 275 | 1.49e-36 | 133 |
| MS.gene27064.t1 | MTR_5g094440 | 33.981 | 206 | 119 | 7 | 141 | 339 | 74 | 269 | 9.12e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27064.t1 | AT1G75710 | 61.838 | 359 | 104 | 8 | 15 | 342 | 104 | 460 | 1.54e-138 | 401 |
| MS.gene27064.t1 | AT4G27240 | 51.883 | 239 | 95 | 4 | 116 | 340 | 198 | 430 | 4.19e-70 | 225 |
| MS.gene27064.t1 | AT5G54630 | 49.388 | 245 | 98 | 5 | 116 | 340 | 233 | 471 | 8.60e-69 | 223 |
| MS.gene27064.t1 | AT4G27240 | 51.643 | 213 | 83 | 4 | 116 | 314 | 198 | 404 | 8.93e-58 | 193 |
| MS.gene27064.t1 | AT2G29660 | 42.570 | 249 | 117 | 7 | 116 | 341 | 128 | 373 | 8.71e-54 | 181 |
| MS.gene27064.t1 | AT1G11490 | 38.333 | 240 | 129 | 6 | 116 | 340 | 129 | 364 | 3.09e-41 | 148 |
| MS.gene27064.t1 | AT1G11490 | 38.333 | 240 | 129 | 6 | 116 | 340 | 129 | 364 | 3.09e-41 | 148 |
| MS.gene27064.t1 | AT4G12450 | 34.703 | 219 | 101 | 5 | 133 | 341 | 91 | 277 | 3.37e-31 | 119 |
| MS.gene27064.t1 | AT4G22560 | 37.500 | 208 | 91 | 6 | 138 | 341 | 92 | 264 | 2.41e-29 | 114 |
| MS.gene27064.t1 | AT1G62520 | 36.585 | 205 | 104 | 7 | 139 | 341 | 100 | 280 | 7.81e-29 | 113 |
Find 91 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCAAGCTTTCAATCTT+AGG | 0.165279 | 1.1:+711718 | None:intergenic |
| ACTCGCTCTGCATCATGTTC+TGG | 0.262275 | 1.1:-713104 | MS.gene27064:CDS |
| CTTCGATCTGTTTGCATGAT+AGG | 0.262632 | 1.1:+713345 | None:intergenic |
| CAACGACATAATGTGCTTCT+AGG | 0.275334 | 1.1:+711763 | None:intergenic |
| CTTCAAGAGGAATGCAGTTT+AGG | 0.296779 | 1.1:-713040 | MS.gene27064:CDS |
| TCCGCCCTTTGCGCCGTGCC+TGG | 0.315948 | 1.1:-709295 | MS.gene27064:CDS |
| CTGGTGTGCCGCGTGATTGC+CGG | 0.335086 | 1.1:-709154 | MS.gene27064:CDS |
| AGCTTCAGAGATGTTGTTCA+TGG | 0.341820 | 1.1:-713242 | MS.gene27064:CDS |
| CATAATGTGCTTCTAGGAAT+TGG | 0.382545 | 1.1:+711769 | None:intergenic |
| ATCACCAGAGAGTAGTATCT+TGG | 0.393830 | 1.1:-713186 | MS.gene27064:CDS |
| CGCCACGCGCTTCACTTTCC+CGG | 0.395766 | 1.1:+709135 | None:intergenic |
| CAGTTGGAGAAGATTCTAGA+AGG | 0.406367 | 1.1:-709183 | MS.gene27064:CDS |
| ATGCAGTTTAGGAAGCTATC+TGG | 0.408827 | 1.1:-713029 | MS.gene27064:CDS |
| CTCGCTCTGCATCATGTTCT+GGG | 0.411037 | 1.1:-713103 | MS.gene27064:CDS |
| GTTCCAAGCTTTCAATCTTA+GGG | 0.412870 | 1.1:+711719 | None:intergenic |
| CTTCCCTAAGATTGAAAGCT+TGG | 0.415664 | 1.1:-711722 | MS.gene27064:CDS |
| GAGCTGGGTCCAGAGGATTC+AGG | 0.426596 | 1.1:-709568 | MS.gene27064:CDS |
| GCGGAGTTTGCAACATAATC+CGG | 0.437889 | 1.1:-709270 | MS.gene27064:CDS |
| TTGTTGAACAGTTTCGGAGC+TGG | 0.439362 | 1.1:-709584 | MS.gene27064:intron |
| GATTCTATTGTGGAGAATGC+TGG | 0.440036 | 1.1:-709067 | MS.gene27064:CDS |
| ATGTTTCTGCCTGAATCCTC+TGG | 0.441608 | 1.1:+709559 | None:intergenic |
| TGTTGAACAGTTTCGGAGCT+GGG | 0.442643 | 1.1:-709583 | MS.gene27064:intron |
| CTCTGCATTCCTCGAACCGT+TGG | 0.442678 | 1.1:+709440 | None:intergenic |
| CGCATCCAGGCACGGCGCAA+AGG | 0.455208 | 1.1:+709290 | None:intergenic |
| CTTTGCGCCGTGCCTGGATG+CGG | 0.466713 | 1.1:-709289 | MS.gene27064:CDS |
| AGGCACGGCGCAAAGGGCGG+AGG | 0.470822 | 1.1:+709297 | None:intergenic |
| AAACATTATGTTAACCTGCT+AGG | 0.471824 | 1.1:+712978 | None:intergenic |
| GCATCCAGGCACGGCGCAAA+GGG | 0.472172 | 1.1:+709291 | None:intergenic |
| GGTGGTGTCAGAGGAGGAAA+TGG | 0.486566 | 1.1:-709098 | MS.gene27064:CDS |
| TCACCAGAGAGTAGTATCTT+GGG | 0.490800 | 1.1:-713185 | MS.gene27064:CDS |
| ACGAACAATCCAACGGTTCG+AGG | 0.494391 | 1.1:-709449 | MS.gene27064:CDS |
| CTTGGTGGTGTTGGATGCAC+GGG | 0.495904 | 1.1:+709405 | None:intergenic |
| AACATTATGTTAACCTGCTA+GGG | 0.496126 | 1.1:+712979 | None:intergenic |
| GAAAGTGAAGCGCGTGGCGG+AGG | 0.498808 | 1.1:-709131 | MS.gene27064:CDS |
| TCTTGGTGGTGTTGGATGCA+CGG | 0.499082 | 1.1:+709404 | None:intergenic |
| ACATGATCGTTGACCCTAGC+AGG | 0.499380 | 1.1:-712992 | MS.gene27064:intron |
| TGGTGTGCCGCGTGATTGCC+GGG | 0.506413 | 1.1:-709153 | MS.gene27064:CDS |
| CATCAAGCTGTTCGACATGC+AGG | 0.509515 | 1.1:-711694 | MS.gene27064:intron |
| AGATTCTAGAAGGGCAATGC+TGG | 0.511299 | 1.1:-709173 | MS.gene27064:CDS |
| ATAGCGATGTGCTGTGGAAA+CGG | 0.513165 | 1.1:+709344 | None:intergenic |
| GAAACACTAGAGTTGTTCAT+AGG | 0.519636 | 1.1:-713220 | MS.gene27064:CDS |
| AAACAAGGAAGAATAGCTCT+TGG | 0.523135 | 1.1:+709007 | None:intergenic |
| TCCAGGCACGGCGCAAAGGG+CGG | 0.528114 | 1.1:+709294 | None:intergenic |
| CTTCTCCAACTGAATTGTCA+TGG | 0.528807 | 1.1:+709194 | None:intergenic |
| ATTCTATTGTGGAGAATGCT+GGG | 0.532404 | 1.1:-709066 | MS.gene27064:CDS |
| CGATCTGTTTGCATGATAGG+AGG | 0.534881 | 1.1:+713348 | None:intergenic |
| GTGAAGCGCGTGGCGGAGGA+AGG | 0.538219 | 1.1:-709127 | MS.gene27064:CDS |
| AGGTGCACCGGTGGTGTCAG+AGG | 0.541723 | 1.1:-709107 | MS.gene27064:CDS |
| GGATTGTTCGTTGTGTGTTG+TGG | 0.544405 | 1.1:+709461 | None:intergenic |
| TTCTCCAACTGAATTGTCAT+GGG | 0.545184 | 1.1:+709195 | None:intergenic |
| ATGTTGCAAACTCCGCATCC+AGG | 0.553814 | 1.1:+709277 | None:intergenic |
| GATGATGATGAAGCAGTGAC+AGG | 0.553941 | 1.1:+713134 | None:intergenic |
| GGGAAATCATCCAACGGTGG+AGG | 0.554162 | 1.1:-713083 | MS.gene27064:CDS |
| AGATAATCTTCAAATCTAGC+TGG | 0.554427 | 1.1:-709531 | MS.gene27064:CDS |
| GGCCCTACCACTACTAGCAT+TGG | 0.555926 | 1.1:+709216 | None:intergenic |
| AGGGCCCATGACAATTCAGT+TGG | 0.558945 | 1.1:-709199 | MS.gene27064:CDS |
| AATCCACGGTGTGCCGCGGA+CGG | 0.561977 | 1.1:-709379 | MS.gene27064:CDS |
| TGTGTAGTTTCCTCCACCGT+TGG | 0.563416 | 1.1:+713073 | None:intergenic |
| GCAAACTCCGCATCCAGGCA+CGG | 0.564278 | 1.1:+709282 | None:intergenic |
| TGACCCAAGATACTACTCTC+TGG | 0.570001 | 1.1:+713182 | None:intergenic |
| GAGGAGTTCGTTGCCGTCCG+CGG | 0.571453 | 1.1:+709366 | None:intergenic |
| GGCGGAGGAAGGTGCACCGG+TGG | 0.572043 | 1.1:-709116 | MS.gene27064:CDS |
| GACCAATGCTAGTAGTGGTA+GGG | 0.575088 | 1.1:-709218 | MS.gene27064:CDS |
| CTCCAATGTGCAAGATTGAA+CGG | 0.576390 | 1.1:-709495 | MS.gene27064:CDS |
| AGACCAATGCTAGTAGTGGT+AGG | 0.580999 | 1.1:-709219 | MS.gene27064:CDS |
| ATCCGTTCAATCTTGCACAT+TGG | 0.586137 | 1.1:+709493 | None:intergenic |
| TTGCCGTCCGCGGCACACCG+TGG | 0.592005 | 1.1:+709376 | None:intergenic |
| TGCAAGGTATTCGGTCAACA+TGG | 0.593874 | 1.1:+708962 | None:intergenic |
| AGTTTCGGAGCTGGGTCCAG+AGG | 0.594982 | 1.1:-709575 | MS.gene27064:CDS |
| TCGTGTGCACTCGGTGCAAG+TGG | 0.597474 | 1.1:-709322 | MS.gene27064:CDS |
| TCACTTTCCCGGCAATCACG+CGG | 0.600425 | 1.1:+709146 | None:intergenic |
| CGTGGCGGAGGAAGGTGCAC+CGG | 0.604564 | 1.1:-709119 | MS.gene27064:CDS |
| ACATCGCTATCGTGTGCACT+CGG | 0.604788 | 1.1:-709331 | MS.gene27064:CDS |
| ATTTCCTCCTCTGACACCAC+CGG | 0.605158 | 1.1:+709100 | None:intergenic |
| AGTTGGAGAAGATTCTAGAA+GGG | 0.607565 | 1.1:-709182 | MS.gene27064:CDS |
| TGCACCGGTGGTGTCAGAGG+AGG | 0.610517 | 1.1:-709104 | MS.gene27064:CDS |
| ACATCATCATCATCTTCAAG+AGG | 0.620776 | 1.1:-713053 | MS.gene27064:CDS |
| GTGAAGACCAATGCTAGTAG+TGG | 0.632554 | 1.1:-709223 | MS.gene27064:CDS |
| CTATCATGCAAACAGATCGA+AGG | 0.636988 | 1.1:-713344 | MS.gene27064:intron |
| TTGTAAATAACTACGAAACA+AGG | 0.649310 | 1.1:+708992 | None:intergenic |
| CGGGAAAGTGAAGCGCGTGG+CGG | 0.664636 | 1.1:-709134 | MS.gene27064:CDS |
| TGTTCTGGGAAATCATCCAA+CGG | 0.668023 | 1.1:-713089 | MS.gene27064:CDS |
| TGCCGGGAAAGTGAAGCGCG+TGG | 0.670291 | 1.1:-709137 | MS.gene27064:CDS |
| CACACGATAGCGATGTGCTG+TGG | 0.671968 | 1.1:+709338 | None:intergenic |
| GCGATGTGCTGTGGAAACGG+AGG | 0.680201 | 1.1:+709347 | None:intergenic |
| GTTTGCAACATAATCCGGCA+CGG | 0.681455 | 1.1:-709265 | MS.gene27064:CDS |
| ACACACAACGAACAATCCAA+CGG | 0.693116 | 1.1:-709456 | MS.gene27064:CDS |
| TTATGTCGTTGTGATAAGTG+TGG | 0.706591 | 1.1:-711751 | MS.gene27064:CDS |
| GTTCGAGGAATGCAGAGACG+CGG | 0.728390 | 1.1:-709434 | MS.gene27064:CDS |
| TCGTTGTGATAAGTGTGGAG+AGG | 0.731697 | 1.1:-711746 | MS.gene27064:CDS |
| TCTGGGAAATCATCCAACGG+TGG | 0.734107 | 1.1:-713086 | MS.gene27064:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTATTTTTTT+TGG | + | chr1.1:711701-711720 | None:intergenic | 0.0% |
| !!! | TTTTTATTTTTATTTTTTTT+GGG | + | chr1.1:711700-711719 | None:intergenic | 0.0% |
| !! | TGCATAAAATATATATATAT+TGG | + | chr1.1:712668-712687 | None:intergenic | 10.0% |
| !!! | ATAAACAAAATTTACTTTTT+AGG | - | chr1.1:711926-711945 | MS.gene27064:intron | 10.0% |
| !!! | ATTATAGTATTTTTGATATA+TGG | - | chr1.1:709491-709510 | MS.gene27064:CDS | 10.0% |
| !!! | ATTTTGTTTATATTTTGAAA+CGG | + | chr1.1:711917-711936 | None:intergenic | 10.0% |
| !!! | CTAGTTTTTTTTTTTTTTTA+GGG | - | chr1.1:711024-711043 | MS.gene27064:intron | 10.0% |
| !! | AAATGCAACAATTTAAATAA+AGG | - | chr1.1:712432-712451 | MS.gene27064:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr1.1:710205-710224 | MS.gene27064:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr1.1:710224-710205 | None:intergenic | 15.0% |
| !! | AACTTTATAATTATACTAGT+AGG | + | chr1.1:712480-712499 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr1.1:710206-710225 | MS.gene27064:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr1.1:710225-710206 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr1.1:709982-710001 | None:intergenic | 15.0% |
| !! | GATTTATTAACTCTTATATA+TGG | - | chr1.1:710826-710845 | MS.gene27064:intron | 15.0% |
| !! | TTACTCATAAAATAAGATAT+TGG | + | chr1.1:709638-709657 | None:intergenic | 15.0% |
| !! | TTATCTAGTATTAAAAGTTA+GGG | + | chr1.1:710280-710299 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr1.1:710113-710132 | MS.gene27064:intron | 15.0% |
| !! | TTTATGAGTACTAATAATAA+TGG | + | chr1.1:712324-712343 | None:intergenic | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr1.1:709947-709966 | None:intergenic | 15.0% |
| !!! | ATTTGTTGATTTTATTATCT+TGG | - | chr1.1:712704-712723 | MS.gene27064:intron | 15.0% |
| !!! | GCTAATTAATTAATTTTCAA+AGG | + | chr1.1:710477-710496 | None:intergenic | 15.0% |
| !!! | GCTAGTTTTTTTTTTTTTTT+AGG | - | chr1.1:711023-711042 | MS.gene27064:intron | 15.0% |
| !!! | TTCATTTATTAATGTTTTTC+AGG | - | chr1.1:709436-709455 | MS.gene27064:CDS | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr1.1:709852-709871 | None:intergenic | 20.0% |
| !! | AATAACTCACTATAATTGAA+TGG | + | chr1.1:709682-709701 | None:intergenic | 20.0% |
| !! | ATTCATTAACCAATGTTAAT+TGG | + | chr1.1:711374-711393 | None:intergenic | 20.0% |
| !! | CTTATCTAGTATTAAAAGTT+AGG | + | chr1.1:710281-710300 | None:intergenic | 20.0% |
| !! | GAAAAAAAAACCTAAAAAGT+TGG | - | chr1.1:710387-710406 | MS.gene27064:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr1.1:709853-709872 | None:intergenic | 20.0% |
| !! | TCACATATATTTCATTCTAA+AGG | - | chr1.1:710433-710452 | MS.gene27064:intron | 20.0% |
| !!! | AAATACAATCAATTTTTGTG+TGG | - | chr1.1:709569-709588 | MS.gene27064:CDS | 20.0% |
| !!! | AATATTGGTTACTCAAAATT+AGG | - | chr1.1:709055-709074 | MS.gene27064:CDS | 20.0% |
| !!! | ATCTCATCAAAATAATCTTT+TGG | - | chr1.1:711089-711108 | MS.gene27064:intron | 20.0% |
| !!! | ATTTTCCAATCATAACTTTT+AGG | - | chr1.1:709715-709734 | MS.gene27064:intron | 20.0% |
| !!! | ATTTTGCTTATATTTTGACA+CGG | - | chr1.1:712024-712043 | MS.gene27064:intron | 20.0% |
| !!! | TCTCATCAAAATAATCTTTT+GGG | - | chr1.1:711090-711109 | MS.gene27064:intron | 20.0% |
| !!! | TTTTCCAATCATAACTTTTA+GGG | - | chr1.1:709716-709735 | MS.gene27064:intron | 20.0% |
| !!! | TTTTTTCATTATCTTGTTCT+TGG | - | chr1.1:711296-711315 | MS.gene27064:intron | 20.0% |
| ! | AACTTTCACAACAATTAACA+TGG | - | chr1.1:711411-711430 | MS.gene27064:intron | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr1.1:709819-709838 | None:intergenic | 25.0% |
| ! | CATTTGTTTAATGATGTATG+TGG | + | chr1.1:711990-712009 | None:intergenic | 25.0% |
| ! | GAAATTGAGAGTTAATATGT+TGG | + | chr1.1:710889-710908 | None:intergenic | 25.0% |
| ! | TAAAATTGAATCATGTGTGT+GGG | - | chr1.1:711130-711149 | MS.gene27064:intron | 25.0% |
| ! | TATAGTAAATGTGATACGAA+TGG | + | chr1.1:710796-710815 | None:intergenic | 25.0% |
| ! | TATGATTGGAAAATGTAGTT+GGG | + | chr1.1:709709-709728 | None:intergenic | 25.0% |
| ! | TCAAAACCAAACAACAATAT+TGG | - | chr1.1:709040-709059 | MS.gene27064:CDS | 25.0% |
| ! | TGACTAATGATAACTTTCAA+TGG | + | chr1.1:712086-712105 | None:intergenic | 25.0% |
| ! | TTAACCCTAAAAGTTATGAT+TGG | + | chr1.1:709723-709742 | None:intergenic | 25.0% |
| ! | TTATGATTGGAAAATGTAGT+TGG | + | chr1.1:709710-709729 | None:intergenic | 25.0% |
| ! | TTGTAAATAACTACGAAACA+AGG | + | chr1.1:713353-713372 | None:intergenic | 25.0% |
| !! | AGCAATTGTTTGAAGATTTT+TGG | - | chr1.1:709536-709555 | MS.gene27064:CDS | 25.0% |
| !! | ATTAATTCACCTTGTTATGA+TGG | + | chr1.1:712356-712375 | None:intergenic | 25.0% |
| !! | TGTTTTCGTCTTAAAGAAAA+AGG | + | chr1.1:710758-710777 | None:intergenic | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr1.1:710142-710161 | MS.gene27064:intron | 25.0% |
| !!! | ATATTGTTGTTTGGTTTTGA+AGG | + | chr1.1:709040-709059 | None:intergenic | 25.0% |
| !!! | ATGATAGGAGGTTTTTTATT+TGG | + | chr1.1:708985-709004 | None:intergenic | 25.0% |
| !!! | ATGATTCAATTTTAGCACAA+AGG | + | chr1.1:711124-711143 | None:intergenic | 25.0% |
| !!! | ATTTACTTTTTTGTATCGAG+AGG | - | chr1.1:712292-712311 | MS.gene27064:intron | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr1.1:710141-710160 | MS.gene27064:intron | 25.0% |
| !!! | TGATTCAATTTTAGCACAAA+GGG | + | chr1.1:711123-711142 | None:intergenic | 25.0% |
| !!! | TGTTTATATTTTGAAACGGA+GGG | + | chr1.1:711913-711932 | None:intergenic | 25.0% |
| !!! | TTGTTTATATTTTGAAACGG+AGG | + | chr1.1:711914-711933 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTTGTATCGAGA+GGG | - | chr1.1:712293-712312 | MS.gene27064:intron | 25.0% |
| !!! | TTTTTTGGGTGAATGAATAA+GGG | + | chr1.1:711686-711705 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGGTGAATGAATA+AGG | + | chr1.1:711687-711706 | None:intergenic | 25.0% |
| AAAATTGAATCATGTGTGTG+GGG | - | chr1.1:711131-711150 | MS.gene27064:intron | 30.0% | |
| AAACATTATGTTAACCTGCT+AGG | + | chr1.1:709367-709386 | None:intergenic | 30.0% | |
| AACATTATGTTAACCTGCTA+GGG | + | chr1.1:709366-709385 | None:intergenic | 30.0% | |
| ACTATTACTGCAGTCATTTA+TGG | + | chr1.1:710911-710930 | None:intergenic | 30.0% | |
| AGATAATCTTCAAATCTAGC+TGG | - | chr1.1:712811-712830 | MS.gene27064:intron | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr1.1:710079-710098 | None:intergenic | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr1.1:709820-709839 | None:intergenic | 30.0% | |
| CCATATAGAAATTCAAACCA+AGG | - | chr1.1:712153-712172 | MS.gene27064:intron | 30.0% | |
| CTAAAATTGAATCATGTGTG+TGG | - | chr1.1:711129-711148 | MS.gene27064:intron | 30.0% | |
| CTTGTATTCCAATTAATGCA+CGG | - | chr1.1:710960-710979 | MS.gene27064:intron | 30.0% | |
| GTGATAAACTGTGAATGAAT+TGG | + | chr1.1:711605-711624 | None:intergenic | 30.0% | |
| TACTAAGATAATGACATGCA+CGG | + | chr1.1:711217-711236 | None:intergenic | 30.0% | |
| TTGCTAGAACCAATTAACAT+TGG | - | chr1.1:711362-711381 | MS.gene27064:intron | 30.0% | |
| ! | CATCTTCGAAATTTGAAACA+AGG | - | chr1.1:711171-711190 | MS.gene27064:intron | 30.0% |
| ! | CCTTGGTTTGAATTTCTATA+TGG | + | chr1.1:712156-712175 | None:intergenic | 30.0% |
| ! | GAGTAACCAATATTGTTGTT+TGG | + | chr1.1:709049-709068 | None:intergenic | 30.0% |
| ! | GTAACTACATCCAACTTTTT+AGG | + | chr1.1:710400-710419 | None:intergenic | 30.0% |
| ! | TGGTTTTCTATCGTATGATA+TGG | + | chr1.1:711885-711904 | None:intergenic | 30.0% |
| ! | TTCGAAATTTGAAACAAGGA+GGG | - | chr1.1:711175-711194 | MS.gene27064:intron | 30.0% |
| ! | TTGTACTTGTTGAACAGTTT+CGG | - | chr1.1:712752-712771 | MS.gene27064:intron | 30.0% |
| !! | GTGATTTAGAATTGATAGTG+TGG | + | chr1.1:711836-711855 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr1.1:710237-710256 | MS.gene27064:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1.1:710256-710237 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr1.1:710236-710255 | MS.gene27064:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1.1:710255-710236 | None:intergenic | 30.0% |
| !! | TTTAGAATTGATAGTGTGGA+TGG | + | chr1.1:711832-711851 | None:intergenic | 30.0% |
| !!! | GAAAGTATCATGAGTTTTCA+TGG | + | chr1.1:712576-712595 | None:intergenic | 30.0% |
| AAACAAGGAAGAATAGCTCT+TGG | + | chr1.1:713338-713357 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr1.1:710221-710240 | MS.gene27064:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr1.1:710240-710221 | None:intergenic | 35.0% | |
| ACATCATCATCATCTTCAAG+AGG | - | chr1.1:709289-709308 | MS.gene27064:CDS | 35.0% | |
| AGTATCACTCCATCATAACA+AGG | - | chr1.1:712344-712363 | MS.gene27064:intron | 35.0% | |
| AGTTCCAAGCTTTCAATCTT+AGG | + | chr1.1:710627-710646 | None:intergenic | 35.0% | |
| ATGACTCATAACAAATGCAC+TGG | + | chr1.1:711645-711664 | None:intergenic | 35.0% | |
| ATTCTATTGTGGAGAATGCT+GGG | - | chr1.1:713276-713295 | MS.gene27064:intron | 35.0% | |
| CGGTAACAAGAATTTAGATC+TGG | - | chr1.1:710980-710999 | MS.gene27064:intron | 35.0% | |
| GAAACACTAGAGTTGTTCAT+AGG | - | chr1.1:709122-709141 | MS.gene27064:CDS | 35.0% | |
| GTTCCAAGCTTTCAATCTTA+GGG | + | chr1.1:710626-710645 | None:intergenic | 35.0% | |
| TATCTCATCTCGTACGTATA+AGG | + | chr1.1:711739-711758 | None:intergenic | 35.0% | |
| TCTTGTTACCGTGCATTAAT+TGG | + | chr1.1:710971-710990 | None:intergenic | 35.0% | |
| TTATGTCGTTGTGATAAGTG+TGG | - | chr1.1:710591-710610 | MS.gene27064:intron | 35.0% | |
| TTCTCCAACTGAATTGTCAT+GGG | + | chr1.1:713150-713169 | None:intergenic | 35.0% | |
| ! | AGTTGGAGAAGATTCTAGAA+GGG | - | chr1.1:713160-713179 | MS.gene27064:CDS | 35.0% |
| ! | CATAATGTGCTTCTAGGAAT+TGG | + | chr1.1:710576-710595 | None:intergenic | 35.0% |
| ! | CTTCGAAATTTGAAACAAGG+AGG | - | chr1.1:711174-711193 | MS.gene27064:intron | 35.0% |
| ! | TAGGAATCTAATCCCTTTTC+AGG | - | chr1.1:712194-712213 | MS.gene27064:intron | 35.0% |
| !! | AACATCTCTGAAGCTACAAA+TGG | + | chr1.1:709095-709114 | None:intergenic | 35.0% |
| !! | AACATTAGCTTTGCTAGTAG+TGG | + | chr1.1:710853-710872 | None:intergenic | 35.0% |
| !! | CGTGAAAAGTATCCTGAAAA+GGG | + | chr1.1:712209-712228 | None:intergenic | 35.0% |
| !!! | GGTGTGTTTTGATTCTATTG+TGG | - | chr1.1:713265-713284 | MS.gene27064:intron | 35.0% |
| !!! | TGCTTATATTTTGACACGGA+GGG | - | chr1.1:712028-712047 | MS.gene27064:intron | 35.0% |
| !!! | TTGCTTATATTTTGACACGG+AGG | - | chr1.1:712027-712046 | MS.gene27064:intron | 35.0% |
| AAGATAATGACATGCACGGA+TGG | + | chr1.1:711213-711232 | None:intergenic | 40.0% | |
| AATCAAGAGTTGTCACGTTG+TGG | + | chr1.1:711801-711820 | None:intergenic | 40.0% | |
| ACACACAACGAACAATCCAA+CGG | - | chr1.1:712886-712905 | MS.gene27064:intron | 40.0% | |
| ACACCACCAAGAAAAATCCA+CGG | - | chr1.1:712949-712968 | MS.gene27064:intron | 40.0% | |
| ACGTGACAACTCTTGATTTC+TGG | - | chr1.1:711803-711822 | MS.gene27064:intron | 40.0% | |
| AGCTTCAGAGATGTTGTTCA+TGG | - | chr1.1:709100-709119 | MS.gene27064:CDS | 40.0% | |
| ATCACCAGAGAGTAGTATCT+TGG | - | chr1.1:709156-709175 | MS.gene27064:CDS | 40.0% | |
| ATCCGTTCAATCTTGCACAT+TGG | + | chr1.1:712852-712871 | None:intergenic | 40.0% | |
| ATGCAGTTTAGGAAGCTATC+TGG | - | chr1.1:709313-709332 | MS.gene27064:CDS | 40.0% | |
| CAACGACATAATGTGCTTCT+AGG | + | chr1.1:710582-710601 | None:intergenic | 40.0% | |
| CAGTTGGAGAAGATTCTAGA+AGG | - | chr1.1:713159-713178 | MS.gene27064:CDS | 40.0% | |
| CTATCATGCAAACAGATCGA+AGG | - | chr1.1:708998-709017 | MS.gene27064:CDS | 40.0% | |
| CTCCAATGTGCAAGATTGAA+CGG | - | chr1.1:712847-712866 | MS.gene27064:intron | 40.0% | |
| CTTCAAGAGGAATGCAGTTT+AGG | - | chr1.1:709302-709321 | MS.gene27064:CDS | 40.0% | |
| CTTCCCTAAGATTGAAAGCT+TGG | - | chr1.1:710620-710639 | MS.gene27064:intron | 40.0% | |
| CTTCGATCTGTTTGCATGAT+AGG | + | chr1.1:709000-709019 | None:intergenic | 40.0% | |
| CTTCTCCAACTGAATTGTCA+TGG | + | chr1.1:713151-713170 | None:intergenic | 40.0% | |
| GATGAGATATCACAGCTGTA+TGG | - | chr1.1:711750-711769 | MS.gene27064:CDS | 40.0% | |
| GATTCTATTGTGGAGAATGC+TGG | - | chr1.1:713275-713294 | MS.gene27064:intron | 40.0% | |
| GTGTATGTGATTGCAAACTC+AGG | - | chr1.1:710547-710566 | MS.gene27064:intron | 40.0% | |
| TCACCAGAGAGTAGTATCTT+GGG | - | chr1.1:709157-709176 | MS.gene27064:CDS | 40.0% | |
| TTGAAACAAGGAGGGCAAAA+AGG | - | chr1.1:711183-711202 | MS.gene27064:intron | 40.0% | |
| ! | CACGGTTTTCAAAAGAAAGG+TGG | - | chr1.1:713095-713114 | MS.gene27064:CDS | 40.0% |
| ! | CTTTCAATGGAAGAGAGTGT+TGG | + | chr1.1:712073-712092 | None:intergenic | 40.0% |
| !! | CATAACAAATGCACTGGCTT+TGG | + | chr1.1:711639-711658 | None:intergenic | 40.0% |
| !! | CTTTCTTTTGAAAACCGTGC+CGG | + | chr1.1:713094-713113 | None:intergenic | 40.0% |
| !! | GCGTGAAAAGTATCCTGAAA+AGG | + | chr1.1:712210-712229 | None:intergenic | 40.0% |
| !! | TGTTCTGGGAAATCATCCAA+CGG | - | chr1.1:709253-709272 | MS.gene27064:CDS | 40.0% |
| !!! | TGGATTTTTCTTGGTGGTGT+TGG | + | chr1.1:712949-712968 | None:intergenic | 40.0% |
| AACCAAGGTAGCCAAGTTGT+AGG | - | chr1.1:712168-712187 | MS.gene27064:intron | 45.0% | |
| ACCAAGGTAGCCAAGTTGTA+GGG | - | chr1.1:712169-712188 | MS.gene27064:intron | 45.0% | |
| AGACCAATGCTAGTAGTGGT+AGG | - | chr1.1:713123-713142 | MS.gene27064:CDS | 45.0% | |
| ATAATGACATGCACGGATGG+TGG | + | chr1.1:711210-711229 | None:intergenic | 45.0% | |
| ATAGCGATGTGCTGTGGAAA+CGG | + | chr1.1:713001-713020 | None:intergenic | 45.0% | |
| CGATCTGTTTGCATGATAGG+AGG | + | chr1.1:708997-709016 | None:intergenic | 45.0% | |
| GACCAATGCTAGTAGTGGTA+GGG | - | chr1.1:713124-713143 | MS.gene27064:CDS | 45.0% | |
| GATTCCTAGTCCCTACAACT+TGG | + | chr1.1:712182-712201 | None:intergenic | 45.0% | |
| GCGGAGTTTGCAACATAATC+CGG | - | chr1.1:713072-713091 | MS.gene27064:CDS | 45.0% | |
| GGATTGTTCGTTGTGTGTTG+TGG | + | chr1.1:712884-712903 | None:intergenic | 45.0% | |
| GTGAAGACCAATGCTAGTAG+TGG | - | chr1.1:713119-713138 | MS.gene27064:CDS | 45.0% | |
| GTTTGCAACATAATCCGGCA+CGG | - | chr1.1:713077-713096 | MS.gene27064:CDS | 45.0% | |
| TCGTTGTGATAAGTGTGGAG+AGG | - | chr1.1:710596-710615 | MS.gene27064:intron | 45.0% | |
| TGACCCAAGATACTACTCTC+TGG | + | chr1.1:709163-709182 | None:intergenic | 45.0% | |
| TGTTGAACAGTTTCGGAGCT+GGG | - | chr1.1:712759-712778 | MS.gene27064:intron | 45.0% | |
| TTGTTGAACAGTTTCGGAGC+TGG | - | chr1.1:712758-712777 | MS.gene27064:intron | 45.0% | |
| ! | ACACCGTGGATTTTTCTTGG+TGG | + | chr1.1:712955-712974 | None:intergenic | 45.0% |
| ! | AGATTCTAGAAGGGCAATGC+TGG | - | chr1.1:713169-713188 | MS.gene27064:CDS | 45.0% |
| ! | ATGTTTCTGCCTGAATCCTC+TGG | + | chr1.1:712786-712805 | None:intergenic | 45.0% |
| ! | CGGCACGGTTTTCAAAAGAA+AGG | - | chr1.1:713092-713111 | MS.gene27064:CDS | 45.0% |
| ! | GATGATGATGAAGCAGTGAC+AGG | + | chr1.1:709211-709230 | None:intergenic | 45.0% |
| !! | AACAAATGCACTGGCTTTGG+TGG | + | chr1.1:711636-711655 | None:intergenic | 45.0% |
| !! | ACAAATGCACTGGCTTTGGT+GGG | + | chr1.1:711635-711654 | None:intergenic | 45.0% |
| !!! | TTTTGAAACGGAGGGAGTAC+TGG | + | chr1.1:711905-711924 | None:intergenic | 45.0% |
| !!! | AAGTAAATTTTTTTTTTTAT+AGG | - | chr1.1:710176-710195 | MS.gene27064:intron | 5.0% |
| !!! | AGTAAATTTTTTTTTTTATA+GGG | - | chr1.1:710177-710196 | MS.gene27064:intron | 5.0% |
| !!! | TATTTTTTTAACAATATTAT+TGG | - | chr1.1:709602-709621 | MS.gene27064:intron | 5.0% |
| ACATCGCTATCGTGTGCACT+CGG | - | chr1.1:713011-713030 | MS.gene27064:CDS | 50.0% | |
| ACATGATCGTTGACCCTAGC+AGG | - | chr1.1:709350-709369 | MS.gene27064:CDS | 50.0% | |
| ACGAACAATCCAACGGTTCG+AGG | - | chr1.1:712893-712912 | MS.gene27064:intron | 50.0% | |
| ACTCGCTCTGCATCATGTTC+TGG | - | chr1.1:709238-709257 | MS.gene27064:CDS | 50.0% | |
| AGGGCCCATGACAATTCAGT+TGG | - | chr1.1:713143-713162 | MS.gene27064:CDS | 50.0% | |
| ATGTTGCAAACTCCGCATCC+AGG | + | chr1.1:713068-713087 | None:intergenic | 50.0% | |
| ATTTCCTCCTCTGACACCAC+CGG | + | chr1.1:713245-713264 | None:intergenic | 50.0% | |
| CAAGAGTTGTCACGTTGTGG+AGG | + | chr1.1:711798-711817 | None:intergenic | 50.0% | |
| CATCAAGCTGTTCGACATGC+AGG | - | chr1.1:710648-710667 | MS.gene27064:intron | 50.0% | |
| CTCGCTCTGCATCATGTTCT+GGG | - | chr1.1:709239-709258 | MS.gene27064:CDS | 50.0% | |
| GTAGCCAAGTTGTAGGGACT+AGG | - | chr1.1:712175-712194 | MS.gene27064:intron | 50.0% | |
| TCCCTACAACTTGGCTACCT+TGG | + | chr1.1:712173-712192 | None:intergenic | 50.0% | |
| TCTGGGAAATCATCCAACGG+TGG | - | chr1.1:709256-709275 | MS.gene27064:CDS | 50.0% | |
| TGTGTAGTTTCCTCCACCGT+TGG | + | chr1.1:709272-709291 | None:intergenic | 50.0% | |
| !! | TCTTGGTGGTGTTGGATGCA+CGG | + | chr1.1:712941-712960 | None:intergenic | 50.0% |
| AGTTGTCACGTTGTGGAGGC+AGG | + | chr1.1:711794-711813 | None:intergenic | 55.0% | |
| CACACGATAGCGATGTGCTG+TGG | + | chr1.1:713007-713026 | None:intergenic | 55.0% | |
| CTCTGCATTCCTCGAACCGT+TGG | + | chr1.1:712905-712924 | None:intergenic | 55.0% | |
| GGCCCTACCACTACTAGCAT+TGG | + | chr1.1:713129-713148 | None:intergenic | 55.0% | |
| GGGAAATCATCCAACGGTGG+AGG | - | chr1.1:709259-709278 | MS.gene27064:CDS | 55.0% | |
| GTTCGAGGAATGCAGAGACG+CGG | - | chr1.1:712908-712927 | MS.gene27064:intron | 55.0% | |
| TCACTTTCCCGGCAATCACG+CGG | + | chr1.1:713199-713218 | None:intergenic | 55.0% | |
| ! | GGTGGTGTCAGAGGAGGAAA+TGG | - | chr1.1:713244-713263 | MS.gene27064:intron | 55.0% |
| !! | CTTGGTGGTGTTGGATGCAC+GGG | + | chr1.1:712940-712959 | None:intergenic | 55.0% |
| AGTTTCGGAGCTGGGTCCAG+AGG | - | chr1.1:712767-712786 | MS.gene27064:intron | 60.0% | |
| GAGCTGGGTCCAGAGGATTC+AGG | - | chr1.1:712774-712793 | MS.gene27064:intron | 60.0% | |
| GCAAACTCCGCATCCAGGCA+CGG | + | chr1.1:713063-713082 | None:intergenic | 60.0% | |
| GCGATGTGCTGTGGAAACGG+AGG | + | chr1.1:712998-713017 | None:intergenic | 60.0% | |
| !! | TCGTGTGCACTCGGTGCAAG+TGG | - | chr1.1:713020-713039 | MS.gene27064:CDS | 60.0% |
| CGCCACGCGCTTCACTTTCC+CGG | + | chr1.1:713210-713229 | None:intergenic | 65.0% | |
| CGGGAAAGTGAAGCGCGTGG+CGG | - | chr1.1:713208-713227 | MS.gene27064:CDS | 65.0% | |
| CTGGTGTGCCGCGTGATTGC+CGG | - | chr1.1:713188-713207 | MS.gene27064:CDS | 65.0% | |
| CTTTGCGCCGTGCCTGGATG+CGG | - | chr1.1:713053-713072 | MS.gene27064:CDS | 65.0% | |
| GAAAGTGAAGCGCGTGGCGG+AGG | - | chr1.1:713211-713230 | MS.gene27064:CDS | 65.0% | |
| GAGGAGTTCGTTGCCGTCCG+CGG | + | chr1.1:712979-712998 | None:intergenic | 65.0% | |
| GCATCCAGGCACGGCGCAAA+GGG | + | chr1.1:713054-713073 | None:intergenic | 65.0% | |
| TGCCGGGAAAGTGAAGCGCG+TGG | - | chr1.1:713205-713224 | MS.gene27064:CDS | 65.0% | |
| TGGTGTGCCGCGTGATTGCC+GGG | - | chr1.1:713189-713208 | MS.gene27064:CDS | 65.0% | |
| ! | AGGTGCACCGGTGGTGTCAG+AGG | - | chr1.1:713235-713254 | MS.gene27064:CDS | 65.0% |
| ! | TGCACCGGTGGTGTCAGAGG+AGG | - | chr1.1:713238-713257 | MS.gene27064:CDS | 65.0% |
| CGCATCCAGGCACGGCGCAA+AGG | + | chr1.1:713055-713074 | None:intergenic | 70.0% | |
| TCCAGGCACGGCGCAAAGGG+CGG | + | chr1.1:713051-713070 | None:intergenic | 70.0% | |
| ! | CGTGGCGGAGGAAGGTGCAC+CGG | - | chr1.1:713223-713242 | MS.gene27064:CDS | 70.0% |
| ! | GTGAAGCGCGTGGCGGAGGA+AGG | - | chr1.1:713215-713234 | MS.gene27064:CDS | 70.0% |
| AGGCACGGCGCAAAGGGCGG+AGG | + | chr1.1:713048-713067 | None:intergenic | 75.0% | |
| TCCGCCCTTTGCGCCGTGCC+TGG | - | chr1.1:713047-713066 | MS.gene27064:CDS | 75.0% | |
| ! | GGCGGAGGAAGGTGCACCGG+TGG | - | chr1.1:713226-713245 | MS.gene27064:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 708976 | 713388 | 708976 | ID=MS.gene27064 |
| chr1.1 | mRNA | 708976 | 713388 | 708976 | ID=MS.gene27064.t1;Parent=MS.gene27064 |
| chr1.1 | exon | 713345 | 713388 | 713345 | ID=MS.gene27064.t1.exon1;Parent=MS.gene27064.t1 |
| chr1.1 | CDS | 713345 | 713388 | 713345 | ID=cds.MS.gene27064.t1;Parent=MS.gene27064.t1 |
| chr1.1 | exon | 712993 | 713262 | 712993 | ID=MS.gene27064.t1.exon2;Parent=MS.gene27064.t1 |
| chr1.1 | CDS | 712993 | 713262 | 712993 | ID=cds.MS.gene27064.t1;Parent=MS.gene27064.t1 |
| chr1.1 | exon | 711695 | 711795 | 711695 | ID=MS.gene27064.t1.exon3;Parent=MS.gene27064.t1 |
| chr1.1 | CDS | 711695 | 711795 | 711695 | ID=cds.MS.gene27064.t1;Parent=MS.gene27064.t1 |
| chr1.1 | exon | 708976 | 709595 | 708976 | ID=MS.gene27064.t1.exon4;Parent=MS.gene27064.t1 |
| chr1.1 | CDS | 708976 | 709595 | 708976 | ID=cds.MS.gene27064.t1;Parent=MS.gene27064.t1 |
| Gene Sequence |
| Protein sequence |
