Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27142.t1 | RHN51648.1 | 92.8 | 221 | 15 | 1 | 1 | 220 | 1 | 221 | 9.30E-112 | 412.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27142.t1 | Q5N6V8 | 38.0 | 237 | 116 | 4 | 14 | 220 | 6 | 241 | 6.5e-37 | 155.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27142.t1 | A0A072U908 | 92.8 | 221 | 15 | 1 | 1 | 220 | 1 | 221 | 6.7e-112 | 412.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene27142.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27142.t1 | MTR_6g045327 | 92.760 | 221 | 15 | 1 | 1 | 220 | 1 | 221 | 3.16e-153 | 431 |
MS.gene27142.t1 | MTR_4g021760 | 48.649 | 222 | 108 | 3 | 1 | 220 | 1 | 218 | 2.56e-61 | 194 |
MS.gene27142.t1 | MTR_8g093040 | 49.545 | 220 | 97 | 3 | 1 | 220 | 1 | 206 | 1.40e-60 | 191 |
MS.gene27142.t1 | MTR_4g021790 | 47.368 | 209 | 107 | 2 | 14 | 220 | 10 | 217 | 2.30e-57 | 183 |
MS.gene27142.t1 | MTR_4g021845 | 44.595 | 222 | 116 | 3 | 1 | 220 | 1 | 217 | 1.03e-55 | 177 |
MS.gene27142.t1 | MTR_1g032570 | 42.917 | 240 | 105 | 4 | 13 | 220 | 10 | 249 | 1.63e-55 | 187 |
MS.gene27142.t1 | MTR_4g021855 | 46.411 | 209 | 109 | 2 | 14 | 220 | 10 | 217 | 5.31e-55 | 177 |
MS.gene27142.t1 | MTR_8g079940 | 36.885 | 244 | 123 | 4 | 4 | 220 | 19 | 258 | 4.69e-45 | 157 |
MS.gene27142.t1 | MTR_4g121020 | 37.712 | 236 | 118 | 3 | 13 | 220 | 30 | 264 | 8.17e-45 | 158 |
MS.gene27142.t1 | MTR_4g121020 | 37.712 | 236 | 118 | 3 | 13 | 220 | 30 | 264 | 8.48e-45 | 158 |
MS.gene27142.t1 | MTR_2g034960 | 38.034 | 234 | 118 | 3 | 13 | 220 | 28 | 260 | 2.01e-44 | 157 |
MS.gene27142.t1 | MTR_8g105600 | 41.048 | 229 | 112 | 3 | 14 | 220 | 9 | 236 | 2.05e-44 | 156 |
MS.gene27142.t1 | MTR_3g086100 | 36.555 | 238 | 122 | 4 | 12 | 220 | 11 | 248 | 4.03e-44 | 155 |
MS.gene27142.t1 | MTR_4g131600 | 33.191 | 235 | 133 | 2 | 10 | 220 | 16 | 250 | 2.41e-38 | 140 |
MS.gene27142.t1 | MTR_5g055260 | 41.063 | 207 | 96 | 5 | 14 | 220 | 10 | 190 | 1.08e-36 | 129 |
MS.gene27142.t1 | MTR_3g106220 | 34.440 | 241 | 125 | 4 | 13 | 220 | 7 | 247 | 2.55e-36 | 135 |
MS.gene27142.t1 | MTR_0450s0040 | 33.175 | 211 | 133 | 1 | 18 | 220 | 8 | 218 | 1.41e-35 | 129 |
MS.gene27142.t1 | MTR_1g013170 | 34.874 | 238 | 124 | 4 | 13 | 220 | 4 | 240 | 2.54e-35 | 130 |
MS.gene27142.t1 | MTR_3g102600 | 32.243 | 214 | 112 | 1 | 7 | 220 | 1 | 181 | 3.67e-35 | 123 |
MS.gene27142.t1 | MTR_3g102600 | 32.243 | 214 | 112 | 1 | 7 | 220 | 1 | 181 | 1.42e-34 | 123 |
MS.gene27142.t1 | MTR_4g131580 | 31.760 | 233 | 133 | 2 | 14 | 220 | 17 | 249 | 2.50e-34 | 129 |
MS.gene27142.t1 | MTR_4g131570 | 30.159 | 252 | 144 | 3 | 1 | 220 | 1 | 252 | 6.42e-34 | 127 |
MS.gene27142.t1 | MTR_1g032570 | 40.000 | 180 | 76 | 4 | 73 | 220 | 1 | 180 | 1.09e-33 | 127 |
MS.gene27142.t1 | MTR_6g016850 | 42.405 | 158 | 88 | 3 | 9 | 164 | 4 | 160 | 6.54e-33 | 117 |
MS.gene27142.t1 | MTR_7g117705 | 32.068 | 237 | 132 | 3 | 13 | 220 | 4 | 240 | 8.17e-33 | 123 |
MS.gene27142.t1 | MTR_2g450070 | 29.804 | 255 | 141 | 3 | 4 | 220 | 8 | 262 | 3.00e-32 | 123 |
MS.gene27142.t1 | MTR_2g450070 | 29.804 | 255 | 141 | 3 | 4 | 220 | 8 | 262 | 3.40e-32 | 123 |
MS.gene27142.t1 | MTR_1g013180 | 30.924 | 249 | 143 | 2 | 1 | 220 | 143 | 391 | 5.76e-31 | 120 |
MS.gene27142.t1 | MTR_7g026400 | 36.458 | 192 | 105 | 2 | 44 | 220 | 17 | 206 | 1.71e-30 | 118 |
MS.gene27142.t1 | MTR_3g102590 | 33.333 | 216 | 118 | 3 | 7 | 220 | 1 | 192 | 2.36e-30 | 111 |
MS.gene27142.t1 | MTR_3g102590 | 33.333 | 216 | 118 | 3 | 7 | 220 | 1 | 192 | 6.73e-30 | 111 |
MS.gene27142.t1 | MTR_3g086100 | 35.593 | 177 | 85 | 4 | 73 | 220 | 1 | 177 | 1.72e-29 | 114 |
MS.gene27142.t1 | MTR_4g023980 | 40.714 | 140 | 75 | 3 | 61 | 195 | 36 | 172 | 1.49e-28 | 106 |
MS.gene27142.t1 | MTR_3g102600 | 30.909 | 165 | 81 | 1 | 56 | 220 | 1 | 132 | 2.28e-26 | 99.4 |
MS.gene27142.t1 | MTR_3g102600 | 30.909 | 165 | 81 | 1 | 56 | 220 | 1 | 132 | 1.52e-25 | 98.6 |
MS.gene27142.t1 | MTR_4g121020 | 34.839 | 155 | 74 | 1 | 93 | 220 | 6 | 160 | 5.88e-24 | 99.8 |
MS.gene27142.t1 | MTR_5g014040 | 34.109 | 129 | 81 | 2 | 12 | 139 | 12 | 137 | 2.47e-14 | 71.6 |
MS.gene27142.t1 | MTR_5g014040 | 34.109 | 129 | 81 | 2 | 12 | 139 | 12 | 137 | 2.53e-14 | 71.6 |
MS.gene27142.t1 | MTR_1g013160 | 26.174 | 149 | 81 | 2 | 76 | 195 | 1 | 149 | 1.84e-13 | 66.2 |
MS.gene27142.t1 | MTR_5g041350 | 54.902 | 51 | 22 | 1 | 171 | 220 | 15 | 65 | 2.64e-11 | 62.4 |
MS.gene27142.t1 | MTR_4g064730 | 52.941 | 51 | 24 | 0 | 170 | 220 | 130 | 180 | 2.92e-11 | 62.0 |
MS.gene27142.t1 | MTR_6g088950 | 29.231 | 130 | 86 | 2 | 53 | 182 | 43 | 166 | 4.61e-11 | 60.5 |
MS.gene27142.t1 | MTR_7g089010 | 52.941 | 51 | 24 | 0 | 170 | 220 | 90 | 140 | 5.00e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27142.t1 | AT2G01760 | 37.295 | 244 | 117 | 4 | 13 | 220 | 6 | 249 | 4.31e-47 | 159 |
MS.gene27142.t1 | AT1G67710 | 38.034 | 234 | 115 | 5 | 17 | 220 | 10 | 243 | 1.47e-41 | 148 |
MS.gene27142.t1 | AT2G01760 | 33.456 | 272 | 117 | 5 | 13 | 220 | 6 | 277 | 2.80e-41 | 145 |
MS.gene27142.t1 | AT3G16857 | 33.716 | 261 | 124 | 5 | 8 | 220 | 27 | 286 | 2.01e-40 | 146 |
MS.gene27142.t1 | AT3G16857 | 33.716 | 261 | 124 | 5 | 8 | 220 | 27 | 286 | 2.41e-40 | 146 |
MS.gene27142.t1 | AT4G31920 | 34.764 | 233 | 138 | 4 | 1 | 220 | 1 | 232 | 1.05e-34 | 129 |
MS.gene27142.t1 | AT2G25180 | 31.837 | 245 | 141 | 3 | 1 | 220 | 1 | 244 | 2.44e-34 | 129 |
MS.gene27142.t1 | AT3G16857 | 32.407 | 216 | 99 | 3 | 52 | 220 | 1 | 216 | 1.55e-32 | 124 |
MS.gene27142.t1 | AT5G49240 | 30.120 | 249 | 144 | 5 | 3 | 222 | 27 | 274 | 3.48e-31 | 116 |
MS.gene27142.t1 | AT5G58080 | 32.328 | 232 | 132 | 4 | 13 | 220 | 13 | 243 | 9.26e-31 | 119 |
MS.gene27142.t1 | AT2G01760 | 35.912 | 181 | 80 | 4 | 76 | 220 | 4 | 184 | 8.22e-30 | 113 |
MS.gene27142.t1 | AT1G67710 | 37.079 | 178 | 82 | 5 | 73 | 220 | 1 | 178 | 5.17e-28 | 110 |
MS.gene27142.t1 | AT3G62670 | 30.802 | 237 | 131 | 8 | 12 | 220 | 34 | 265 | 5.29e-27 | 107 |
MS.gene27142.t1 | AT1G49190 | 27.600 | 250 | 147 | 7 | 4 | 220 | 20 | 268 | 7.27e-25 | 101 |
MS.gene27142.t1 | AT1G67710 | 37.975 | 158 | 68 | 5 | 93 | 220 | 12 | 169 | 4.47e-22 | 94.0 |
MS.gene27142.t1 | AT5G07210 | 25.573 | 262 | 130 | 6 | 18 | 220 | 16 | 271 | 8.19e-16 | 76.3 |
MS.gene27142.t1 | AT1G49190 | 28.148 | 135 | 97 | 0 | 4 | 138 | 20 | 154 | 1.81e-14 | 72.4 |
MS.gene27142.t1 | AT5G07210 | 26.872 | 227 | 101 | 6 | 53 | 220 | 59 | 279 | 4.56e-14 | 71.2 |
MS.gene27142.t1 | AT5G59570 | 32.773 | 119 | 77 | 2 | 102 | 220 | 75 | 190 | 2.47e-12 | 65.1 |
MS.gene27142.t1 | AT5G59570 | 32.773 | 119 | 77 | 2 | 102 | 220 | 75 | 190 | 2.47e-12 | 65.1 |
MS.gene27142.t1 | AT2G40970 | 52.941 | 51 | 24 | 0 | 170 | 220 | 104 | 154 | 1.78e-11 | 62.4 |
MS.gene27142.t1 | AT5G05090 | 52.941 | 51 | 24 | 0 | 170 | 220 | 80 | 130 | 3.56e-11 | 61.6 |
MS.gene27142.t1 | AT3G46640 | 52.941 | 51 | 24 | 0 | 170 | 220 | 143 | 193 | 3.80e-11 | 62.0 |
MS.gene27142.t1 | AT3G46640 | 52.941 | 51 | 24 | 0 | 170 | 220 | 143 | 193 | 3.97e-11 | 62.0 |
MS.gene27142.t1 | AT3G46640 | 52.941 | 51 | 24 | 0 | 170 | 220 | 143 | 193 | 3.97e-11 | 62.0 |
MS.gene27142.t1 | AT3G10760 | 52.941 | 51 | 24 | 0 | 170 | 220 | 104 | 154 | 4.98e-11 | 61.6 |
MS.gene27142.t1 | AT2G27070 | 50.909 | 55 | 26 | 1 | 166 | 220 | 221 | 274 | 5.12e-11 | 62.0 |
MS.gene27142.t1 | AT5G60100 | 28.800 | 125 | 86 | 1 | 15 | 136 | 61 | 185 | 5.77e-11 | 62.0 |
MS.gene27142.t1 | AT3G04030 | 54.902 | 51 | 22 | 1 | 171 | 220 | 45 | 95 | 6.47e-11 | 61.6 |
MS.gene27142.t1 | AT3G04030 | 54.902 | 51 | 22 | 1 | 171 | 220 | 45 | 95 | 7.12e-11 | 61.2 |
MS.gene27142.t1 | AT5G60100 | 28.800 | 125 | 86 | 1 | 15 | 136 | 61 | 185 | 8.01e-11 | 61.2 |
MS.gene27142.t1 | AT5G60100 | 28.800 | 125 | 86 | 1 | 15 | 136 | 61 | 185 | 8.01e-11 | 61.2 |
MS.gene27142.t1 | AT5G60100 | 28.800 | 125 | 86 | 1 | 15 | 136 | 61 | 185 | 8.01e-11 | 61.2 |
MS.gene27142.t1 | AT2G46790 | 31.148 | 122 | 81 | 1 | 18 | 136 | 37 | 158 | 8.66e-11 | 61.2 |
MS.gene27142.t1 | AT3G04030 | 52.000 | 50 | 24 | 0 | 171 | 220 | 45 | 94 | 8.91e-11 | 61.2 |
MS.gene27142.t1 | AT2G46790 | 31.148 | 122 | 81 | 1 | 18 | 136 | 37 | 158 | 8.94e-11 | 61.2 |
Find 37 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAATTCTTAGAGGGTTTA+AGG | 0.118099 | 6.2:+50927602 | MS.gene27142:CDS |
CTAAGGGCTGTGAATCAATT+TGG | 0.229550 | 6.2:+50928513 | MS.gene27142:CDS |
CAATGCATCAAGAATTTCTA+AGG | 0.275756 | 6.2:+50928496 | MS.gene27142:CDS |
GCATATTGCTAGCCATTTAC+AGG | 0.279083 | 6.2:+50928694 | MS.gene27142:CDS |
CCCGTTTGCAATAGCCTTCA+AGG | 0.349006 | 6.2:-50928274 | None:intergenic |
ACTTCCCCAACAATTCTTAG+AGG | 0.375785 | 6.2:+50927594 | MS.gene27142:CDS |
TGACAGGAATATTGATTTGT+TGG | 0.378211 | 6.2:-50927950 | None:intergenic |
GATCAAATTCATGTTGATAA+TGG | 0.381612 | 6.2:+50928390 | MS.gene27142:CDS |
TAAACCCTCTAAGAATTGTT+GGG | 0.382270 | 6.2:-50927599 | None:intergenic |
ACAATTCTTAGAGGGTTTAA+GGG | 0.385698 | 6.2:+50927603 | MS.gene27142:CDS |
TGATTTGTTGGGTAATTTGT+TGG | 0.402510 | 6.2:-50927938 | None:intergenic |
ATTCAAGTGATGAATGTTCC+TGG | 0.409770 | 6.2:+50928659 | MS.gene27142:CDS |
CCTTGAAGGCTATTGCAAAC+GGG | 0.420675 | 6.2:+50928274 | MS.gene27142:CDS |
TTAAACCCTCTAAGAATTGT+TGG | 0.427205 | 6.2:-50927600 | None:intergenic |
GCCATCGTTGAAAAGTCAAT+TGG | 0.430946 | 6.2:+50927661 | MS.gene27142:CDS |
TCCTTGAAGGCTATTGCAAA+CGG | 0.433944 | 6.2:+50928273 | MS.gene27142:CDS |
GACAGGAATATTGATTTGTT+GGG | 0.435755 | 6.2:-50927949 | None:intergenic |
TGTGCAGTGATGGGTGTTGA+TGG | 0.436154 | 6.2:+50928237 | MS.gene27142:intron |
AATTTGTTGGAGAAAATCAT+AGG | 0.440238 | 6.2:-50927925 | None:intergenic |
AACGATGGCATTGTGGATAG+TGG | 0.451069 | 6.2:-50927647 | None:intergenic |
ATCAACAAGTGCATCCTTGA+AGG | 0.472077 | 6.2:+50928260 | MS.gene27142:CDS |
GGCAAAGAATCTTACTATCA+AGG | 0.473824 | 6.2:-50928536 | None:intergenic |
AATGGCTCTTTCAACTGAGA+TGG | 0.494149 | 6.2:+50927567 | None:intergenic |
TCATGTTGATGTGGTTGAAA+AGG | 0.515561 | 6.2:+50928425 | MS.gene27142:CDS |
CGTTGAAAAGTCAATTGGAT+GGG | 0.523926 | 6.2:+50927666 | MS.gene27142:CDS |
TATATGTTCTTACTAATGAC+AGG | 0.536013 | 6.2:-50927966 | None:intergenic |
CTTCCCCAACAATTCTTAGA+GGG | 0.553790 | 6.2:+50927595 | MS.gene27142:CDS |
ACATGTGCAAACACGTTCCA+AGG | 0.562980 | 6.2:+50928343 | MS.gene27142:CDS |
TTGATTAGGTCATCACTCAA+AGG | 0.569533 | 6.2:-50928318 | None:intergenic |
TCGTTGAAAAGTCAATTGGA+TGG | 0.580260 | 6.2:+50927665 | MS.gene27142:CDS |
TCAATTGGATGGGATTACAA+AGG | 0.596849 | 6.2:+50927676 | MS.gene27142:CDS |
AAACCCTCTAAGAATTGTTG+GGG | 0.603847 | 6.2:-50927598 | None:intergenic |
CTTGAAGGCTATTGCAAACG+GGG | 0.604122 | 6.2:+50928275 | MS.gene27142:CDS |
AAAAGAAGCATTAGAGCATG+TGG | 0.613637 | 6.2:-50927826 | None:intergenic |
AATGCATCAAGAATTTCTAA+GGG | 0.619626 | 6.2:+50928497 | MS.gene27142:CDS |
AAAAGAATCTCATGTTGATG+TGG | 0.621750 | 6.2:+50928416 | MS.gene27142:CDS |
ATATGCTCTCTTGTCAAACC+AGG | 0.644357 | 6.2:-50928677 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAGAAAAAAAAAAAG+TGG | - | chr6.2:50928560-50928579 | None:intergenic | 15.0% |
!!! | ATCACTTGAATAATTTTTTT+TGG | - | chr6.2:50928650-50928669 | None:intergenic | 15.0% |
!!! | GTTTGTTTTTTAGATTAATT+TGG | + | chr6.2:50928716-50928735 | MS.gene27142:intron | 15.0% |
! | AATGCATCAAGAATTTCTAA+GGG | + | chr6.2:50928497-50928516 | MS.gene27142:CDS | 25.0% |
! | CAAAAAAGAACCGTTTAAAA+TGG | + | chr6.2:50928466-50928485 | MS.gene27142:CDS | 25.0% |
! | CTAAAAAACAAACCTGTAAA+TGG | - | chr6.2:50928709-50928728 | None:intergenic | 25.0% |
! | TATATGTTCTTACTAATGAC+AGG | - | chr6.2:50927969-50927988 | None:intergenic | 25.0% |
!! | GATCAAATTCATGTTGATAA+TGG | + | chr6.2:50928390-50928409 | MS.gene27142:CDS | 25.0% |
!!! | AATGTCTGTTTTTGCTTTAT+TGG | + | chr6.2:50928083-50928102 | MS.gene27142:intron | 25.0% |
!!! | AATTTGTTGGAGAAAATCAT+AGG | - | chr6.2:50927928-50927947 | None:intergenic | 25.0% |
!!! | GTTTTGCATCTGAAATATAA+GGG | - | chr6.2:50928628-50928647 | None:intergenic | 25.0% |
!!! | TTAAACGGTTCTTTTTTGTT+GGG | - | chr6.2:50928464-50928483 | None:intergenic | 25.0% |
!!! | TTTAAACGGTTCTTTTTTGT+TGG | - | chr6.2:50928465-50928484 | None:intergenic | 25.0% |
AAAAGAATCTCATGTTGATG+TGG | + | chr6.2:50928416-50928435 | MS.gene27142:CDS | 30.0% | |
AACAATTCTTAGAGGGTTTA+AGG | + | chr6.2:50927602-50927621 | MS.gene27142:CDS | 30.0% | |
ACAATTCTTAGAGGGTTTAA+GGG | + | chr6.2:50927603-50927622 | MS.gene27142:CDS | 30.0% | |
CAATGCATCAAGAATTTCTA+AGG | + | chr6.2:50928496-50928515 | MS.gene27142:CDS | 30.0% | |
! | GTTTCATTCAAAGTTTTCCT+TGG | - | chr6.2:50928363-50928382 | None:intergenic | 30.0% |
! | TAAACCCTCTAAGAATTGTT+GGG | - | chr6.2:50927602-50927621 | None:intergenic | 30.0% |
! | TTAAACCCTCTAAGAATTGT+TGG | - | chr6.2:50927603-50927622 | None:intergenic | 30.0% |
! | TTGCTTGAGACCATTTTAAA+CGG | - | chr6.2:50928479-50928498 | None:intergenic | 30.0% |
!! | GACAGGAATATTGATTTGTT+GGG | - | chr6.2:50927952-50927971 | None:intergenic | 30.0% |
!! | GGTTTTGCATCTGAAATATA+AGG | - | chr6.2:50928629-50928648 | None:intergenic | 30.0% |
!! | GTTTGCACATGTTTTTGATT+AGG | - | chr6.2:50928335-50928354 | None:intergenic | 30.0% |
!! | TGACAGGAATATTGATTTGT+TGG | - | chr6.2:50927953-50927972 | None:intergenic | 30.0% |
!! | TGATTTGTTGGGTAATTTGT+TGG | - | chr6.2:50927941-50927960 | None:intergenic | 30.0% |
!!! | TAAACGGTTCTTTTTTGTTG+GGG | - | chr6.2:50928463-50928482 | None:intergenic | 30.0% |
!!! | TTTTGCATTGACTCTTTTGA+GGG | + | chr6.2:50927845-50927864 | MS.gene27142:CDS | 30.0% |
ATTCAAGTGATGAATGTTCC+TGG | + | chr6.2:50928659-50928678 | MS.gene27142:CDS | 35.0% | |
CGTTGAAAAGTCAATTGGAT+GGG | + | chr6.2:50927666-50927685 | MS.gene27142:CDS | 35.0% | |
GGCAAAGAATCTTACTATCA+AGG | - | chr6.2:50928539-50928558 | None:intergenic | 35.0% | |
TCAATTGGATGGGATTACAA+AGG | + | chr6.2:50927676-50927695 | MS.gene27142:CDS | 35.0% | |
TCATGTTGATGTGGTTGAAA+AGG | + | chr6.2:50928425-50928444 | MS.gene27142:CDS | 35.0% | |
TCGTTGAAAAGTCAATTGGA+TGG | + | chr6.2:50927665-50927684 | MS.gene27142:CDS | 35.0% | |
TTGATTAGGTCATCACTCAA+AGG | - | chr6.2:50928321-50928340 | None:intergenic | 35.0% | |
! | AAACCCTCTAAGAATTGTTG+GGG | - | chr6.2:50927601-50927620 | None:intergenic | 35.0% |
! | TGCATCTGAAATATAAGGGA+GGG | - | chr6.2:50928624-50928643 | None:intergenic | 35.0% |
! | TTGCATCTGAAATATAAGGG+AGG | - | chr6.2:50928625-50928644 | None:intergenic | 35.0% |
!! | AAAAGAAGCATTAGAGCATG+TGG | - | chr6.2:50927829-50927848 | None:intergenic | 35.0% |
!! | TCCAATTGACTTTTCAACGA+TGG | - | chr6.2:50927665-50927684 | None:intergenic | 35.0% |
!!! | AAACGGTTCTTTTTTGTTGG+GGG | - | chr6.2:50928462-50928481 | None:intergenic | 35.0% |
!!! | CTTTTGCATTGACTCTTTTG+AGG | + | chr6.2:50927844-50927863 | MS.gene27142:CDS | 35.0% |
!!! | TCTGTTTTTGCTTTATTGGC+TGG | + | chr6.2:50928087-50928106 | MS.gene27142:intron | 35.0% |
ACTTCCCCAACAATTCTTAG+AGG | + | chr6.2:50927594-50927613 | MS.gene27142:CDS | 40.0% | |
ATATGCTCTCTTGTCAAACC+AGG | - | chr6.2:50928680-50928699 | None:intergenic | 40.0% | |
ATATGTGTCATGTGCAGTGA+TGG | + | chr6.2:50928227-50928246 | MS.gene27142:intron | 40.0% | |
ATCAACAAGTGCATCCTTGA+AGG | + | chr6.2:50928260-50928279 | MS.gene27142:CDS | 40.0% | |
CTAAGGGCTGTGAATCAATT+TGG | + | chr6.2:50928513-50928532 | MS.gene27142:CDS | 40.0% | |
CTTCCCCAACAATTCTTAGA+GGG | + | chr6.2:50927595-50927614 | MS.gene27142:CDS | 40.0% | |
GCATATTGCTAGCCATTTAC+AGG | + | chr6.2:50928694-50928713 | MS.gene27142:CDS | 40.0% | |
GCCATCGTTGAAAAGTCAAT+TGG | + | chr6.2:50927661-50927680 | MS.gene27142:CDS | 40.0% | |
TATGTGTCATGTGCAGTGAT+GGG | + | chr6.2:50928228-50928247 | MS.gene27142:intron | 40.0% | |
TCCTTGAAGGCTATTGCAAA+CGG | + | chr6.2:50928273-50928292 | MS.gene27142:CDS | 40.0% | |
! | ACTTTTCAACGATGGCATTG+TGG | - | chr6.2:50927657-50927676 | None:intergenic | 40.0% |
! | GCATCTGAAATATAAGGGAG+GGG | - | chr6.2:50928623-50928642 | None:intergenic | 40.0% |
! | GTCAAAAGCGAACGTGATTT+TGG | - | chr6.2:50928055-50928074 | None:intergenic | 40.0% |
!! | ACTCTTTTGAGGGAAGCAAA+GGG | + | chr6.2:50927855-50927874 | MS.gene27142:CDS | 40.0% |
AACGATGGCATTGTGGATAG+TGG | - | chr6.2:50927650-50927669 | None:intergenic | 45.0% | |
ACATGTGCAAACACGTTCCA+AGG | + | chr6.2:50928343-50928362 | MS.gene27142:CDS | 45.0% | |
CAATCAGTCACTCAAGCACA+AGG | - | chr6.2:50928163-50928182 | None:intergenic | 45.0% | |
CACACACACTTATGTGCAAC+AGG | + | chr6.2:50928021-50928040 | MS.gene27142:intron | 45.0% | |
CCTTGAAGGCTATTGCAAAC+GGG | + | chr6.2:50928274-50928293 | MS.gene27142:CDS | 45.0% | |
CTTGAAGGCTATTGCAAACG+GGG | + | chr6.2:50928275-50928294 | MS.gene27142:CDS | 45.0% | |
GCATTAGAGCATGTGGTAAC+TGG | - | chr6.2:50927822-50927841 | None:intergenic | 45.0% | |
!! | GACTCTTTTGAGGGAAGCAA+AGG | + | chr6.2:50927854-50927873 | MS.gene27142:CDS | 45.0% |
CCCGTTTGCAATAGCCTTCA+AGG | - | chr6.2:50928277-50928296 | None:intergenic | 50.0% | |
!! | TGTGCAGTGATGGGTGTTGA+TGG | + | chr6.2:50928237-50928256 | MS.gene27142:intron | 50.0% |
CAAGCACAAGGCGTGCTGAA+GGG | - | chr6.2:50928151-50928170 | None:intergenic | 55.0% | |
TCAAGCACAAGGCGTGCTGA+AGG | - | chr6.2:50928152-50928171 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 50927568 | 50928809 | 50927568 | ID=MS.gene27142 |
chr6.2 | mRNA | 50927568 | 50928809 | 50927568 | ID=MS.gene27142.t1;Parent=MS.gene27142 |
chr6.2 | exon | 50927568 | 50927697 | 50927568 | ID=MS.gene27142.t1.exon1;Parent=MS.gene27142.t1 |
chr6.2 | CDS | 50927568 | 50927697 | 50927568 | ID=cds.MS.gene27142.t1;Parent=MS.gene27142.t1 |
chr6.2 | exon | 50927823 | 50927975 | 50927823 | ID=MS.gene27142.t1.exon2;Parent=MS.gene27142.t1 |
chr6.2 | CDS | 50927823 | 50927975 | 50927823 | ID=cds.MS.gene27142.t1;Parent=MS.gene27142.t1 |
chr6.2 | exon | 50928244 | 50928543 | 50928244 | ID=MS.gene27142.t1.exon3;Parent=MS.gene27142.t1 |
chr6.2 | CDS | 50928244 | 50928543 | 50928244 | ID=cds.MS.gene27142.t1;Parent=MS.gene27142.t1 |
chr6.2 | exon | 50928639 | 50928715 | 50928639 | ID=MS.gene27142.t1.exon4;Parent=MS.gene27142.t1 |
chr6.2 | CDS | 50928639 | 50928715 | 50928639 | ID=cds.MS.gene27142.t1;Parent=MS.gene27142.t1 |
chr6.2 | exon | 50928798 | 50928809 | 50928798 | ID=MS.gene27142.t1.exon5;Parent=MS.gene27142.t1 |
chr6.2 | CDS | 50928798 | 50928809 | 50928798 | ID=cds.MS.gene27142.t1;Parent=MS.gene27142.t1 |
Gene Sequence |
Protein sequence |