AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27180.t1 MTR_2g024380 87.179 312 40 0 245 556 159 470 0.0 574
MS.gene27180.t1 MTR_2g024380 74.468 235 50 2 1 235 1 225 1.28e-88 281
MS.gene27180.t1 MTR_2g024350 87.665 227 28 0 330 556 1 227 5.65e-146 419
MS.gene27180.t1 MTR_6g053200 39.812 319 160 6 255 556 233 536 8.75e-67 226
MS.gene27180.t1 MTR_6g053200 48.958 96 43 1 1 90 1 96 1.14e-14 77.0
MS.gene27180.t1 MTR_7g104980 51.759 199 95 1 358 556 18 215 5.19e-55 185
MS.gene27180.t1 MTR_8g067635 35.925 373 162 7 171 469 135 504 8.31e-54 191
MS.gene27180.t1 MTR_8g067650 36.228 334 142 6 253 555 226 519 4.67e-53 189
MS.gene27180.t1 MTR_8g069935 41.294 201 87 2 256 426 220 419 2.95e-40 152
MS.gene27180.t1 MTR_1g099600 53.061 98 44 2 315 412 164 259 2.78e-29 118
MS.gene27180.t1 MTR_7g079040 35.135 185 103 5 305 478 122 300 1.43e-26 110
MS.gene27180.t1 MTR_8g028565 45.370 108 58 1 316 423 134 240 1.20e-25 108
MS.gene27180.t1 MTR_7g105000 33.921 227 92 4 179 357 124 340 1.48e-25 108
MS.gene27180.t1 MTR_7g105000 54.762 84 37 1 1 84 1 83 3.05e-12 68.6
MS.gene27180.t1 MTR_1g070455 65.079 63 22 0 334 396 290 352 6.84e-24 103
MS.gene27180.t1 MTR_2g032030 37.778 135 70 3 288 409 205 338 4.58e-23 102
MS.gene27180.t1 MTR_2g033110 65.049 103 31 2 1 98 1 103 7.76e-23 97.1
MS.gene27180.t1 MTR_2g032030 37.778 135 70 3 288 409 205 338 8.29e-23 102
MS.gene27180.t1 MTR_4g127040 60.317 63 25 0 334 396 242 304 2.79e-22 98.2
MS.gene27180.t1 MTR_3g108960 45.055 91 49 1 313 402 289 379 3.98e-22 99.4
MS.gene27180.t1 MTR_4g094908 47.674 86 42 1 313 395 239 324 5.48e-22 97.8
MS.gene27180.t1 MTR_5g016610 56.061 66 29 0 330 395 192 257 8.76e-22 95.9
MS.gene27180.t1 MTR_8g098945 54.795 73 32 1 338 410 130 201 1.64e-21 95.1
MS.gene27180.t1 MTR_8g087000 59.677 62 25 0 336 397 76 137 1.79e-21 94.4
MS.gene27180.t1 MTR_8g087000 59.677 62 25 0 336 397 75 136 2.34e-21 94.0
MS.gene27180.t1 MTR_7g109600 46.154 91 42 1 315 398 24 114 3.67e-21 94.0
MS.gene27180.t1 MTR_4g052030 71.186 59 5 1 337 395 5 51 4.67e-21 87.0
MS.gene27180.t1 MTR_1g009613 43.750 112 55 2 287 394 212 319 7.85e-21 94.4
MS.gene27180.t1 MTR_2g016770 47.253 91 44 1 311 397 5 95 1.18e-20 91.3
MS.gene27180.t1 MTR_2g016770 59.677 62 25 0 336 397 26 87 1.55e-20 90.5
MS.gene27180.t1 MTR_2g083870 59.677 62 25 0 336 397 79 140 1.58e-20 92.0
MS.gene27180.t1 MTR_0117s0040 56.250 64 28 0 331 394 68 131 6.84e-20 89.7
MS.gene27180.t1 MTR_2g045360 35.345 116 69 1 282 397 162 271 2.27e-17 85.1
MS.gene27180.t1 MTR_3g053330 50.000 60 30 0 338 397 252 311 5.20e-17 84.3
MS.gene27180.t1 MTR_1g086790 41.111 90 51 2 317 406 139 226 1.83e-16 81.3
MS.gene27180.t1 MTR_3g106060 50.847 59 29 0 337 395 138 196 6.22e-16 79.0
MS.gene27180.t1 MTR_7g100510 48.276 87 43 2 322 408 174 258 1.58e-15 79.3
MS.gene27180.t1 MTR_7g100510 44.444 81 42 2 332 412 356 433 1.97e-14 75.9
MS.gene27180.t1 MTR_7g110720 49.206 63 32 0 335 397 214 276 2.54e-15 78.6
MS.gene27180.t1 MTR_7g110720 49.206 63 32 0 335 397 187 249 2.91e-15 78.2
MS.gene27180.t1 MTR_1g013790 47.541 61 32 0 337 397 101 161 3.28e-15 76.3
MS.gene27180.t1 MTR_4g094588 46.053 76 39 2 323 398 165 238 3.78e-15 77.4
MS.gene27180.t1 MTR_5g094430 30.726 179 83 5 222 398 285 424 4.02e-15 78.6
MS.gene27180.t1 MTR_3g056100 52.308 65 30 1 338 402 403 466 5.04e-15 78.6
MS.gene27180.t1 MTR_3g056100 52.308 65 30 1 338 402 416 479 5.07e-15 78.6
MS.gene27180.t1 MTR_3g056100 52.308 65 30 1 338 402 272 335 6.00e-15 77.8
MS.gene27180.t1 MTR_5g094430 46.575 73 38 1 326 398 241 312 6.16e-15 77.4
MS.gene27180.t1 MTR_3g056100 52.308 65 30 1 338 402 259 322 6.19e-15 77.4
MS.gene27180.t1 MTR_5g094430 30.726 179 83 5 222 398 151 290 6.44e-15 77.4
MS.gene27180.t1 MTR_4g082580 49.296 71 35 1 332 402 273 342 6.45e-15 77.0
MS.gene27180.t1 MTR_2g088000 46.479 71 38 0 338 408 350 420 6.56e-15 78.2
MS.gene27180.t1 MTR_7g011820 53.846 65 29 1 334 398 407 470 7.80e-15 77.8
MS.gene27180.t1 MTR_7g011820 50.704 71 33 2 333 403 224 292 3.67e-14 75.5
MS.gene27180.t1 MTR_5g042920 50.725 69 33 1 334 402 317 384 9.20e-15 77.0
MS.gene27180.t1 MTR_5g042920 52.174 69 31 2 333 401 147 213 2.25e-13 72.8
MS.gene27180.t1 MTR_4g132430 48.333 60 31 0 338 397 128 187 9.21e-15 76.3
MS.gene27180.t1 MTR_4g107970 44.156 77 41 1 323 397 162 238 9.91e-15 77.4
MS.gene27180.t1 MTR_2g023930 48.333 60 31 0 338 397 306 365 1.06e-14 77.4
MS.gene27180.t1 MTR_4g107970 44.156 77 41 1 323 397 239 315 1.58e-14 77.0
MS.gene27180.t1 MTR_4g049790 43.023 86 47 2 325 408 298 383 1.73e-14 76.6
MS.gene27180.t1 MTR_4g132430 48.333 60 31 0 338 397 262 321 1.93e-14 76.3
MS.gene27180.t1 MTR_3g031220 56.250 64 26 2 338 401 199 260 1.93e-14 75.5
MS.gene27180.t1 MTR_4g007060 47.541 61 32 0 337 397 128 188 2.40e-14 73.9
MS.gene27180.t1 MTR_4g049760 45.070 71 39 0 338 408 291 361 2.54e-14 76.3
MS.gene27180.t1 MTR_3g031220 56.250 64 26 2 338 401 199 260 2.61e-14 75.9
MS.gene27180.t1 MTR_3g031220 47.761 67 34 1 332 398 360 425 3.21e-13 72.4
MS.gene27180.t1 MTR_4g007060 47.541 61 32 0 337 397 162 222 2.62e-14 74.3
MS.gene27180.t1 MTR_5g074400 50.746 67 32 1 332 398 415 480 2.78e-14 76.3
MS.gene27180.t1 MTR_5g074400 56.667 60 24 2 338 397 244 301 2.71e-13 72.8
MS.gene27180.t1 MTR_3g009470 49.296 71 34 2 337 407 280 348 2.93e-14 76.3
MS.gene27180.t1 MTR_3g009470 52.459 61 28 1 338 398 496 555 2.06e-13 73.6
MS.gene27180.t1 MTR_3g009470 49.296 71 34 2 337 407 280 348 3.82e-14 75.5
MS.gene27180.t1 MTR_7g062220 44.318 88 41 4 324 410 113 193 4.19e-14 73.9
MS.gene27180.t1 MTR_7g009730 50.877 57 28 0 338 394 220 276 5.30e-14 75.1
MS.gene27180.t1 MTR_4g094412 50.000 60 30 0 338 397 235 294 6.37e-14 74.7
MS.gene27180.t1 MTR_4g094412 50.000 60 30 0 338 397 244 303 8.02e-14 74.3
MS.gene27180.t1 MTR_4g122530 40.580 69 40 1 338 406 209 276 9.98e-14 73.6
MS.gene27180.t1 MTR_7g080020 50.000 72 34 2 337 408 280 349 1.37e-13 74.3
MS.gene27180.t1 MTR_7g080020 44.156 77 42 1 332 408 488 563 1.71e-13 73.9
MS.gene27180.t1 MTR_5g097490 52.459 61 28 1 338 398 253 312 1.58e-13 72.8
MS.gene27180.t1 MTR_5g097490 51.471 68 31 2 333 400 88 153 2.14e-13 72.4
MS.gene27180.t1 MTR_7g080000 42.268 97 49 3 337 433 234 323 1.63e-13 73.9
MS.gene27180.t1 MTR_7g080000 47.761 67 34 1 332 398 427 492 8.14e-13 71.6
MS.gene27180.t1 MTR_2g033820 47.541 61 31 1 338 398 204 263 2.19e-13 72.4
MS.gene27180.t1 MTR_7g071120 41.935 93 50 3 309 401 140 228 3.05e-13 72.4
MS.gene27180.t1 MTR_7g071120 39.773 88 52 1 311 398 298 384 1.62e-11 67.0
MS.gene27180.t1 MTR_7g109800 38.554 83 48 2 325 405 131 212 4.17e-13 70.5
MS.gene27180.t1 MTR_1g013760 46.552 58 31 0 338 395 141 198 4.32e-13 70.5
MS.gene27180.t1 MTR_4g130900 46.875 64 33 1 338 401 360 422 4.76e-13 72.0
MS.gene27180.t1 MTR_4g013260 48.438 64 32 1 334 397 333 395 6.82e-13 71.6
MS.gene27180.t1 MTR_4g013260 41.558 77 44 1 321 397 168 243 1.66e-11 67.0
MS.gene27180.t1 MTR_2g105060 45.161 62 34 0 337 398 94 155 6.88e-13 68.9
MS.gene27180.t1 MTR_3g095040 43.750 64 35 1 334 397 115 177 7.70e-13 68.2
MS.gene27180.t1 MTR_5g091390 45.161 62 33 1 337 398 157 217 8.15e-13 70.1
MS.gene27180.t1 MTR_2g105060 45.161 62 34 0 337 398 169 230 8.95e-13 69.7
MS.gene27180.t1 MTR_3g095080 42.857 70 37 2 328 395 157 225 1.02e-12 68.6
MS.gene27180.t1 MTR_3g095080 42.857 70 37 2 328 395 133 201 1.71e-12 67.4
MS.gene27180.t1 MTR_8g007270 46.875 64 33 1 332 395 149 211 1.73e-12 67.4
MS.gene27180.t1 MTR_1g015140 45.902 61 32 1 334 394 99 158 1.92e-12 65.9
MS.gene27180.t1 MTR_8g092140 43.750 64 35 1 332 395 155 217 2.08e-12 67.4
MS.gene27180.t1 MTR_8g092010 43.750 64 35 1 334 397 105 167 2.16e-12 66.2
MS.gene27180.t1 MTR_5g043880 36.735 98 60 2 308 405 96 191 2.51e-12 68.2
MS.gene27180.t1 MTR_5g067680 49.153 59 28 1 336 392 201 259 4.19e-12 68.2
MS.gene27180.t1 MTR_1g078260 32.500 120 58 4 313 410 209 327 9.00e-12 67.8
MS.gene27180.t1 MTR_7g079010 43.548 62 34 1 333 394 137 197 1.14e-11 65.1
MS.gene27180.t1 MTR_7g028415 40.984 61 35 1 334 394 90 149 4.43e-11 62.0
MS.gene27180.t1 MTR_7g028710 40.984 61 35 1 334 394 90 149 4.43e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27180.t1 AT4G01250 48.454 97 49 1 315 411 106 201 3.02e-26 109
MS.gene27180.t1 AT5G52830 52.041 98 45 2 315 412 144 239 3.05e-26 110
MS.gene27180.t1 AT3G04670 48.936 94 38 1 313 396 228 321 4.56e-24 103
MS.gene27180.t1 AT5G28650 47.872 94 39 1 313 396 228 321 8.70e-24 102
MS.gene27180.t1 AT4G31550 47.917 96 43 2 313 403 218 311 4.74e-23 100
MS.gene27180.t1 AT2G24570 58.571 70 29 0 334 403 240 309 5.36e-23 100
MS.gene27180.t1 AT4G31550 57.143 70 30 0 334 403 243 312 9.80e-23 99.8
MS.gene27180.t1 AT4G23550 47.253 91 47 1 321 411 124 213 3.07e-22 97.8
MS.gene27180.t1 AT2G23320 52.326 86 34 2 315 395 215 298 3.50e-22 97.8
MS.gene27180.t1 AT4G24240 49.495 99 43 2 302 395 243 339 6.20e-22 97.8
MS.gene27180.t1 AT2G34830 44.444 99 45 2 317 406 186 283 8.11e-22 98.6
MS.gene27180.t1 AT2G34830 44.444 99 45 2 317 406 195 292 8.61e-22 98.6
MS.gene27180.t1 AT2G30590 48.936 94 38 2 313 396 279 372 1.34e-21 97.4
MS.gene27180.t1 AT5G45050 46.667 90 47 1 317 406 1160 1248 2.46e-21 99.4
MS.gene27180.t1 AT5G45050 46.667 90 47 1 317 406 1021 1109 2.57e-21 99.0
MS.gene27180.t1 AT5G45050 46.667 90 47 1 317 406 1132 1220 2.91e-21 99.0
MS.gene27180.t1 AT1G30650 37.500 136 70 4 281 406 155 285 7.50e-21 95.9
MS.gene27180.t1 AT1G29280 58.065 62 26 0 336 397 73 134 2.95e-20 91.3
MS.gene27180.t1 AT3G58710 53.731 67 31 0 336 402 70 136 7.62e-20 90.1
MS.gene27180.t1 AT3G58710 53.731 67 31 0 336 402 69 135 7.70e-20 90.1
MS.gene27180.t1 AT3G01080 54.688 64 28 1 334 397 341 403 9.09e-16 80.5
MS.gene27180.t1 AT3G01080 41.237 97 46 4 333 424 201 291 6.38e-15 77.8
MS.gene27180.t1 AT3G01080 54.688 64 28 1 334 397 303 365 1.12e-15 79.7
MS.gene27180.t1 AT3G01080 41.237 97 46 4 333 424 163 253 7.46e-15 77.4
MS.gene27180.t1 AT1G69810 45.833 72 38 1 338 408 146 217 1.55e-15 78.6
MS.gene27180.t1 AT1G69810 45.833 72 38 1 338 408 204 275 1.59e-15 79.0
MS.gene27180.t1 AT3G01080 41.237 97 46 4 333 424 201 291 1.74e-15 78.2
MS.gene27180.t1 AT1G62300 50.000 60 30 0 338 397 313 372 1.98e-15 79.7
MS.gene27180.t1 AT4G22070 50.000 60 30 0 338 397 298 357 2.48e-15 79.3
MS.gene27180.t1 AT4G22070 50.000 60 30 0 338 397 298 357 2.48e-15 79.3
MS.gene27180.t1 AT4G22070 50.000 60 30 0 338 397 298 357 2.48e-15 79.3
MS.gene27180.t1 AT4G22070 50.000 60 30 0 338 397 298 357 2.48e-15 79.3
MS.gene27180.t1 AT4G04450 43.421 76 43 0 338 413 199 274 2.85e-15 78.6
MS.gene27180.t1 AT2G47260 41.667 96 49 3 317 406 148 242 3.42e-15 77.4
MS.gene27180.t1 AT2G03340 53.125 64 29 1 334 397 412 474 3.81e-15 78.6
MS.gene27180.t1 AT2G03340 48.571 70 34 2 333 402 246 313 3.05e-12 69.7
MS.gene27180.t1 AT4G04450 43.421 76 43 0 338 413 293 368 5.26e-15 78.2
MS.gene27180.t1 AT1G64000 39.286 84 48 2 313 394 88 170 1.24e-14 73.2
MS.gene27180.t1 AT5G15130 39.535 86 50 1 314 397 160 245 1.42e-14 77.0
MS.gene27180.t1 AT5G15130 39.535 86 50 1 314 397 202 287 1.72e-14 76.6
MS.gene27180.t1 AT2G38470 51.515 66 31 1 332 397 357 421 1.94e-14 76.6
MS.gene27180.t1 AT2G38470 48.684 76 37 2 322 397 169 242 2.28e-14 76.3
MS.gene27180.t1 AT1G13960 51.562 64 30 1 334 397 406 468 2.85e-14 75.9
MS.gene27180.t1 AT1G13960 50.769 65 30 2 333 397 225 287 4.38e-12 68.9
MS.gene27180.t1 AT1G18860 50.000 60 30 0 338 397 240 299 3.23e-14 75.9
MS.gene27180.t1 AT2G04880 51.667 60 28 1 338 397 308 366 4.18e-14 75.5
MS.gene27180.t1 AT2G04880 51.667 60 28 1 338 397 284 342 4.53e-14 75.1
MS.gene27180.t1 AT1G13960 51.562 64 30 1 334 397 253 315 4.80e-14 74.3
MS.gene27180.t1 AT1G13960 49.275 69 33 2 333 401 72 138 9.77e-12 67.0
MS.gene27180.t1 AT3G62340 47.619 63 30 2 338 399 119 179 6.06e-14 72.8
MS.gene27180.t1 AT1G68150 50.000 60 30 0 338 397 236 295 6.37e-14 73.9
MS.gene27180.t1 AT5G43290 57.895 57 23 1 338 394 115 170 7.01e-14 72.8
MS.gene27180.t1 AT1G29860 44.595 74 38 2 327 398 124 196 7.08e-14 72.8
MS.gene27180.t1 AT1G80840 43.548 62 35 0 337 398 146 207 7.60e-14 72.8
MS.gene27180.t1 AT4G26640 52.459 61 28 1 338 398 342 401 8.79e-14 74.3
MS.gene27180.t1 AT4G26640 52.459 61 28 1 338 398 206 265 8.82e-14 73.6
MS.gene27180.t1 AT4G26640 52.459 61 28 1 338 398 206 265 8.82e-14 73.6
MS.gene27180.t1 AT4G26640 52.459 61 28 1 338 398 206 265 8.82e-14 73.6
MS.gene27180.t1 AT4G26640 52.459 61 28 1 338 398 206 265 8.82e-14 73.6
MS.gene27180.t1 AT5G07100 45.946 74 39 1 332 405 229 301 9.50e-14 72.8
MS.gene27180.t1 AT5G07100 44.118 68 37 1 330 397 110 176 1.23e-11 66.2
MS.gene27180.t1 AT4G26640 52.459 61 28 1 338 398 382 441 1.00e-13 74.3
MS.gene27180.t1 AT4G26640 52.459 61 28 1 338 398 310 369 1.04e-13 73.9
MS.gene27180.t1 AT4G18170 45.946 74 37 2 327 398 160 232 1.24e-13 72.4
MS.gene27180.t1 AT5G26170 50.000 62 30 1 334 395 110 170 1.35e-13 69.7
MS.gene27180.t1 AT2G30250 50.820 61 29 1 338 398 329 388 1.49e-13 73.2
MS.gene27180.t1 AT2G30250 50.000 64 30 2 338 401 167 228 8.03e-12 67.8
MS.gene27180.t1 AT5G41570 46.032 63 33 1 332 394 93 154 1.67e-13 69.3
MS.gene27180.t1 AT5G07100 45.946 74 39 1 332 405 136 208 1.83e-13 70.1
MS.gene27180.t1 AT5G07100 42.466 73 41 1 330 402 17 88 2.23e-11 64.3
MS.gene27180.t1 AT5G07100 45.946 74 39 1 332 405 136 208 1.83e-13 70.1
MS.gene27180.t1 AT5G07100 42.466 73 41 1 330 402 17 88 2.23e-11 64.3
MS.gene27180.t1 AT5G07100 45.946 74 39 1 332 405 136 208 1.83e-13 70.1
MS.gene27180.t1 AT5G07100 42.466 73 41 1 330 402 17 88 2.23e-11 64.3
MS.gene27180.t1 AT5G07100 45.946 74 39 1 332 405 136 208 1.83e-13 70.1
MS.gene27180.t1 AT5G07100 42.466 73 41 1 330 402 17 88 2.23e-11 64.3
MS.gene27180.t1 AT4G01720 48.333 60 31 0 338 397 240 299 1.95e-13 73.2
MS.gene27180.t1 AT5G56270 49.254 67 33 1 332 398 482 547 2.01e-13 73.6
MS.gene27180.t1 AT5G56270 50.769 65 30 2 337 401 273 335 2.16e-12 70.5
MS.gene27180.t1 AT4G30935 47.692 65 33 1 338 402 332 395 2.19e-13 72.8
MS.gene27180.t1 AT4G31800 44.262 61 34 0 337 397 111 171 2.20e-13 70.5
MS.gene27180.t1 AT2G21900 49.180 61 30 1 338 398 110 169 2.48e-13 69.7
MS.gene27180.t1 AT1G55600 38.750 80 48 1 318 397 288 366 2.70e-13 72.8
MS.gene27180.t1 AT2G37260 55.738 61 25 2 338 398 166 224 3.40e-13 72.0
MS.gene27180.t1 AT2G37260 40.476 84 44 3 315 394 324 405 9.53e-13 70.9
MS.gene27180.t1 AT2G44745 47.619 63 32 1 332 394 140 201 4.24e-13 69.3
MS.gene27180.t1 AT4G31800 44.262 61 34 0 337 397 176 236 4.53e-13 70.9
MS.gene27180.t1 AT2G37260 55.738 61 25 2 338 398 86 144 4.79e-13 71.2
MS.gene27180.t1 AT2G37260 40.476 84 44 3 315 394 244 325 1.57e-12 69.7
MS.gene27180.t1 AT2G37260 55.738 61 25 2 338 398 84 142 4.94e-13 70.9
MS.gene27180.t1 AT2G37260 40.476 84 44 3 315 394 242 323 1.51e-12 69.7
MS.gene27180.t1 AT5G46350 48.387 62 31 1 337 398 183 243 5.17e-13 70.9
MS.gene27180.t1 AT4G26440 47.887 71 35 2 338 408 179 247 6.04e-13 72.0
MS.gene27180.t1 AT4G26440 26.047 215 130 5 230 417 239 451 2.11e-12 70.1
MS.gene27180.t1 AT5G45260 32.867 143 80 5 263 401 1144 1274 1.07e-12 71.6
MS.gene27180.t1 AT5G49520 46.667 60 31 1 338 397 222 280 1.29e-12 70.1
MS.gene27180.t1 AT1G69310 37.363 91 55 2 315 405 126 214 2.93e-12 68.2
MS.gene27180.t1 AT1G69310 37.363 91 55 2 315 405 126 214 2.93e-12 68.2
MS.gene27180.t1 AT1G69310 37.363 91 55 2 315 405 126 214 2.93e-12 68.2
MS.gene27180.t1 AT2G25000 42.623 61 35 0 337 397 103 163 3.80e-12 66.6
MS.gene27180.t1 AT2G25000 42.623 61 35 0 337 397 103 163 3.80e-12 66.6
MS.gene27180.t1 AT2G25000 35.484 93 57 1 337 429 125 214 4.59e-12 66.6
MS.gene27180.t1 AT2G40740 41.463 82 43 2 316 392 149 230 7.69e-12 66.6
MS.gene27180.t1 AT2G40740 41.463 82 43 2 316 392 158 239 9.64e-12 66.6
MS.gene27180.t1 AT2G25000 42.623 61 35 0 337 397 146 206 1.34e-11 65.9
MS.gene27180.t1 AT2G46130 38.750 80 48 1 315 394 8 86 2.40e-11 61.2
MS.gene27180.t1 AT4G39410 46.552 58 30 1 338 395 224 280 3.80e-11 64.7
MS.gene27180.t1 AT3G01970 46.154 65 32 2 338 400 66 129 3.81e-11 61.6
MS.gene27180.t1 AT5G13080 42.105 57 32 1 338 394 68 123 5.11e-11 61.2

Find 155 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTAAACGCTAGAAATT+TGG 0.084907 2.1:-64843655 MS.gene27180:CDS
CTCTCTAATAGTTCTATTTC+TGG 0.157050 2.1:+64843708 None:intergenic
ACCCAAATTTCTAGCGTTTA+AGG 0.162127 2.1:+64843653 None:intergenic
CATGAACACTAGTGTTTATC+AGG 0.198077 2.1:+64844975 None:intergenic
CTCCATGCCCACGGGTCTTT+TGG 0.209857 2.1:+64844362 None:intergenic
ATGAATCCAGTTTCAGAATA+AGG 0.224140 2.1:+64843552 None:intergenic
CCGTGGGCATGGAGGAAATA+TGG 0.249497 2.1:-64844353 MS.gene27180:CDS
CGGATGTGGAGACCCTTTAA+TGG 0.271178 2.1:+64844322 None:intergenic
GATAGTGTAGGTGGTGGTGG+CGG 0.292237 2.1:+64845177 None:intergenic
GATTACAGTGGCAGTGATAA+TGG 0.292582 2.1:+64845042 None:intergenic
GGGGATGGTGGTGGTCAAGG+GGG 0.302266 2.1:+64845150 None:intergenic
TATTCTGAAACTGGATTCAT+TGG 0.302973 2.1:-64843549 MS.gene27180:CDS
ATAGTTCTATTTCTGGATAA+AGG 0.309444 2.1:+64843715 None:intergenic
TAGAGGGAATGTGATGTTAT+TGG 0.309533 2.1:+64845381 None:intergenic
GGTGGGGATGGTGGTGGTCA+AGG 0.315657 2.1:+64845147 None:intergenic
ATAGTGTAGGTGGTGGTGGC+GGG 0.318835 2.1:+64845178 None:intergenic
AACCTCCCTTATTCTGAAAC+TGG 0.323380 2.1:-64843558 MS.gene27180:CDS
TCCTTAAACGCTAGAAATTT+GGG 0.325021 2.1:-64843654 MS.gene27180:CDS
TGGGGATGGTGGTGGTCAAG+GGG 0.326902 2.1:+64845149 None:intergenic
ATGAAGTCATTTGGTTTAAG+TGG 0.330576 2.1:+64845292 None:intergenic
TGGGATAGTGTAGGTGGTGG+TGG 0.332732 2.1:+64845174 None:intergenic
TGCAACGCTACCACATTTAC+TGG 0.340291 2.1:-64845454 MS.gene27180:CDS
AGTGTAGGTGGTGGTGGCGG+GGG 0.341815 2.1:+64845180 None:intergenic
GGGTATTGGAAAATTATAAT+TGG 0.342276 2.1:+64844934 None:intergenic
GGGATGGTGGTGGTCAAGGG+GGG 0.345552 2.1:+64845151 None:intergenic
TAGTGTAGGTGGTGGTGGCG+GGG 0.346368 2.1:+64845179 None:intergenic
GTGGGGATGGTGGTGGTCAA+GGG 0.354025 2.1:+64845148 None:intergenic
CAAAGTGGTGTGACACTTAG+AGG 0.354737 2.1:+64845364 None:intergenic
CACTATGCGGATCAAGAAAA+AGG 0.357686 2.1:-64844565 MS.gene27180:intron
TGCTCTTAGCAGATATGATT+GGG 0.361525 2.1:+64844774 None:intergenic
TTACACTCTGCGGAAGAAAC+TGG 0.365125 2.1:-64843843 MS.gene27180:CDS
AAATCCAGGTTCCCCTAGTA+TGG 0.366946 2.1:-64843802 MS.gene27180:CDS
GTGCTTGTAGCAGATATGAT+AGG 0.367308 2.1:+64845001 None:intergenic
ATCTGCAACATCACCATACT+AGG 0.367397 2.1:+64843789 None:intergenic
ATCAATGCATGCAACATGTT+TGG 0.367904 2.1:+64844634 None:intergenic
ATCAATGCATGCAACATGTT+TGG 0.367904 2.1:+64844862 None:intergenic
TCTAGATTTATGAAGTCATT+TGG 0.369091 2.1:+64845283 None:intergenic
TGATAGGGGTAGTGGTGGTC+GGG 0.373880 2.1:+64845017 None:intergenic
ATAATTTGTGGAATATTGAT+TGG 0.374619 2.1:+64844721 None:intergenic
TCTGACCAAGCTGTTATGTT+TGG 0.377584 2.1:+64843495 None:intergenic
TTGGTCAGAAGATTATTTAA+TGG 0.378102 2.1:-64843481 MS.gene27180:CDS
GGTTGGATGCACGATCAAAA+TGG 0.380288 2.1:+64844828 None:intergenic
TCAATGCATGCAACATGTTT+GGG 0.386538 2.1:+64844635 None:intergenic
TCAATGCATGCAACATGTTT+GGG 0.386538 2.1:+64844863 None:intergenic
CCACAAAGTAGGAATGTTAC+AGG 0.397474 2.1:-64843597 MS.gene27180:CDS
TGTTGTTGTCCAGCGGGTAT+TGG 0.401974 2.1:+64844920 None:intergenic
ATAATTGGCGGGATATTGAT+TGG 0.402825 2.1:+64844949 None:intergenic
TTGGTAGTGGTTTCGATTTG+AGG 0.403044 2.1:+64845400 None:intergenic
ATTACAGTGGCAGTGATAAT+GGG 0.403708 2.1:+64845043 None:intergenic
TTTAATAAGAATGTTGTTGT+TGG 0.409716 2.1:-64843897 MS.gene27180:CDS
CAGCGCAAGTCACTGGAGAC+TGG 0.413600 2.1:-64843867 MS.gene27180:CDS
GTTAGTGATCTGGGTGGGGA+TGG 0.414583 2.1:+64845135 None:intergenic
GGATGTGGAGACCCTTTAAT+GGG 0.418234 2.1:+64844323 None:intergenic
CCTGTAACATTCCTACTTTG+TGG 0.419186 2.1:+64843597 None:intergenic
TTGATTGATCAGCGAGAACC+TGG 0.424637 2.1:+64843742 None:intergenic
CATTGGGAAATTATAATTTG+TGG 0.426325 2.1:+64844709 None:intergenic
AGTGATCTGGGTGGGGATGG+TGG 0.428433 2.1:+64845138 None:intergenic
GTGCTCTTAGCAGATATGAT+TGG 0.430126 2.1:+64844773 None:intergenic
TAGTGTTAATGTTAGTGATC+TGG 0.434303 2.1:+64845125 None:intergenic
AGTGGTGGGAATAGTGATGG+TGG 0.436219 2.1:+64845081 None:intergenic
ACAACATTCTTATTAAATGT+TGG 0.443200 2.1:+64843903 None:intergenic
TATAGCACACCAATGCCATT+TGG 0.445367 2.1:+64844402 None:intergenic
TGAATCCAGTTTCAGAATAA+GGG 0.447038 2.1:+64843553 None:intergenic
AGTGGGAGCTGAGGTGGGGA+TGG 0.450737 2.1:+64845237 None:intergenic
ATACTAGTGGGAGCTGAGGT+GGG 0.454923 2.1:+64845232 None:intergenic
AGCAGATATGATTGGGGTAG+TGG 0.455016 2.1:+64844781 None:intergenic
GAATGTGATGTTATTGGTAG+TGG 0.458828 2.1:+64845387 None:intergenic
ATGATAGGGGTAGTGGTGGT+CGG 0.463932 2.1:+64845016 None:intergenic
TACATCCCAGCGCAAGTCAC+TGG 0.469837 2.1:-64843874 MS.gene27180:CDS
ATTGGAAAATTATAATTGGC+GGG 0.476395 2.1:+64844938 None:intergenic
CCATATTTCCTCCATGCCCA+CGG 0.476436 2.1:+64844353 None:intergenic
ATGGACTTCAAGTGCCTCAA+TGG 0.476923 2.1:-64843462 MS.gene27180:CDS
CGTGGGCATGGAGGAAATAT+GGG 0.481905 2.1:-64844352 MS.gene27180:CDS
TGAAGTCATTTGGTTTAAGT+GGG 0.485609 2.1:+64845293 None:intergenic
GTTTCGATTTGAGGTGGCGG+TGG 0.486220 2.1:+64845409 None:intergenic
ACCTGGGTATTGCTGCTCTC+CGG 0.486470 2.1:+64843759 None:intergenic
TGGCATTGGTGTGCTATATG+AGG 0.487449 2.1:-64844397 MS.gene27180:CDS
GGGTGGGATAGTGTAGGTGG+TGG 0.487925 2.1:+64845171 None:intergenic
TTACCCTCTGTGGAAGAAGT+TGG 0.488537 2.1:-64843681 MS.gene27180:CDS
CAGTCTCCAGTGACTTGCGC+TGG 0.491501 2.1:+64843868 None:intergenic
CATACTAGTGGGAGCTGAGG+TGG 0.495210 2.1:+64845231 None:intergenic
TGCTTGTAGCAGATATGATA+GGG 0.497057 2.1:+64845002 None:intergenic
GATCTGGGTGGGGATGGTGG+TGG 0.503265 2.1:+64845141 None:intergenic
ATCACCATACTAGGGGAACC+TGG 0.508434 2.1:+64843798 None:intergenic
AGTGTTAATGTTAGTGATCT+GGG 0.513369 2.1:+64845126 None:intergenic
GTGGGAGCTGAGGTGGGGAT+GGG 0.514412 2.1:+64845238 None:intergenic
TAGAAAACATAATAACCAAA+TGG 0.516057 2.1:-64844417 MS.gene27180:CDS
ACTTATATTGTAACATATGA+AGG 0.520110 2.1:-64843945 MS.gene27180:CDS
TATTGGAAAATTATAATTGG+CGG 0.522883 2.1:+64844937 None:intergenic
GATGTTGCAGATCGATCATC+CGG 0.525110 2.1:-64843778 MS.gene27180:CDS
ATATTTGTAAACCTCGGATG+TGG 0.527362 2.1:+64844308 None:intergenic
TAATGTTAGTGATCTGGGTG+GGG 0.527576 2.1:+64845131 None:intergenic
AGCAGATATGATAGGGGTAG+TGG 0.527593 2.1:+64845009 None:intergenic
TTCCAAAAGACCCGTGGGCA+TGG 0.527766 2.1:-64844364 MS.gene27180:CDS
CGCATAGTGCAACCGATGGA+TGG 0.529058 2.1:+64844579 None:intergenic
AGTCTCCAGTGACTTGCGCT+GGG 0.530524 2.1:+64843869 None:intergenic
ACATAATAACCAAATGGCAT+TGG 0.531292 2.1:-64844411 MS.gene27180:CDS
TCTACAAACATCACAAATCC+AGG 0.538062 2.1:-64843816 MS.gene27180:CDS
TTGAATTTGTTGTTGTCCAG+CGG 0.540268 2.1:+64844913 None:intergenic
AGCGCAAGTCACTGGAGACT+GGG 0.541737 2.1:-64843866 MS.gene27180:CDS
TATAATTTCCCAATGCACGC+TGG 0.543748 2.1:-64844701 MS.gene27180:CDS
GATAGGGGTAGTGGTGGTCG+GGG 0.550830 2.1:+64845018 None:intergenic
GTTGGATGCACGATCAAAAT+GGG 0.551415 2.1:+64844829 None:intergenic
TGGCATACTAGTGGGAGCTG+AGG 0.554747 2.1:+64845228 None:intergenic
GGCGATAACTGATGGATGGT+TGG 0.556513 2.1:+64844811 None:intergenic
CATATTTCCTCCATGCCCAC+GGG 0.559003 2.1:+64844354 None:intergenic
TACTAGTGGGAGCTGAGGTG+GGG 0.568500 2.1:+64845233 None:intergenic
TGATACCAAACATAACAGCT+TGG 0.570214 2.1:-64843500 MS.gene27180:CDS
GTGGTGGGAATAGTGATGGT+GGG 0.572780 2.1:+64845082 None:intergenic
TGATTGTCCAGCAAGAAGAA+AGG 0.574441 2.1:-64843994 MS.gene27180:CDS
GATTGGGGTAGTGGTGGTCG+AGG 0.574650 2.1:+64844790 None:intergenic
GGGAGTGGTGGGAATAGTGA+TGG 0.578338 2.1:+64845078 None:intergenic
TGAATTTGTTGTTGTCCAGC+GGG 0.581001 2.1:+64844914 None:intergenic
TCTGCAACATCACCATACTA+GGG 0.581668 2.1:+64843790 None:intergenic
GGAATATAGCGCCACCATTG+AGG 0.585327 2.1:+64843448 None:intergenic
GTGGTTTCGATTTGAGGTGG+CGG 0.594576 2.1:+64845406 None:intergenic
TTGATTGGTTTCATGAACAC+TGG 0.596026 2.1:+64844736 None:intergenic
GTAGTGGTTTCGATTTGAGG+TGG 0.597682 2.1:+64845403 None:intergenic
AAAGTGGTGTGACACTTAGA+GGG 0.602585 2.1:+64845365 None:intergenic
GTGGTCGAGGCGATAACTGA+TGG 0.602965 2.1:+64844803 None:intergenic
AATTTGATGAACCACAAAGT+AGG 0.604187 2.1:-64843608 MS.gene27180:CDS
TCCGGAGAGCAGCAATACCC+AGG 0.606173 2.1:-64843760 MS.gene27180:CDS
TTAATGTTAGTGATCTGGGT+GGG 0.608216 2.1:+64845130 None:intergenic
ATGAACACTAGTGTTTATCA+GGG 0.614534 2.1:+64844976 None:intergenic
ATCCAGTTTCAGAATAAGGG+AGG 0.616537 2.1:+64843556 None:intergenic
GACTTCAAGTGCCTCAATGG+TGG 0.617561 2.1:-64843459 MS.gene27180:CDS
GAAGTCATTTGGTTTAAGTG+GGG 0.620194 2.1:+64845294 None:intergenic
GCTATTACAAATGTAGCACT+TGG 0.620926 2.1:-64844019 MS.gene27180:CDS
TTACAGTGGCAGTGATAATG+GGG 0.626243 2.1:+64845044 None:intergenic
GTTGGTAGGACCAGTAAATG+TGG 0.630317 2.1:+64845444 None:intergenic
TTAAAGGGTCTCCACATCCG+AGG 0.642226 2.1:-64844319 MS.gene27180:intron
AGATATGATTGGGGTAGTGG+TGG 0.642708 2.1:+64844784 None:intergenic
ATGAGCTTCCAAAAGACCCG+TGG 0.645013 2.1:-64844370 MS.gene27180:CDS
CAAAAGACCCGTGGGCATGG+AGG 0.646342 2.1:-64844361 MS.gene27180:CDS
GATCCGCATAGTGCAACCGA+TGG 0.649098 2.1:+64844575 None:intergenic
GATCCAACTTCTTCCACAGA+GGG 0.650056 2.1:+64843678 None:intergenic
GTAAAATCATCATAGCAAAG+TGG 0.655809 2.1:+64845349 None:intergenic
CATCCATCGGTTGCACTATG+CGG 0.659476 2.1:-64844578 MS.gene27180:CDS
AGATATGATAGGGGTAGTGG+TGG 0.663183 2.1:+64845012 None:intergenic
TCGAGGCGATAACTGATGGA+TGG 0.664288 2.1:+64844807 None:intergenic
AGAGAGTCACTTACCCTCTG+TGG 0.665669 2.1:-64843691 MS.gene27180:CDS
TGATTGATCAGCGAGAACCT+GGG 0.667246 2.1:+64843743 None:intergenic
TGAGCTTCCAAAAGACCCGT+GGG 0.668568 2.1:-64844369 MS.gene27180:CDS
GGCATTGGTGTGCTATATGA+GGG 0.674239 2.1:-64844396 MS.gene27180:CDS
GTATGCACGTTCAAAATGAG+TGG 0.675266 2.1:+64844604 None:intergenic
GCTTGTAGCAGATATGATAG+GGG 0.681969 2.1:+64845003 None:intergenic
GCTCTTAGCAGATATGATTG+GGG 0.685620 2.1:+64844775 None:intergenic
ACGTGCATACAACCATCCAT+CGG 0.691580 2.1:-64844591 MS.gene27180:CDS
GGTGGTCGGGGTGATTACAG+TGG 0.694133 2.1:+64845030 None:intergenic
CTGCAACATCACCATACTAG+GGG 0.719168 2.1:+64843791 None:intergenic
GGATGCACGATCAAAATGGG+TGG 0.719593 2.1:+64844832 None:intergenic
TACAGTGGCAGTGATAATGG+GGG 0.720290 2.1:+64845045 None:intergenic
GGAGACTGGGTTACACTCTG+CGG 0.721711 2.1:-64843853 MS.gene27180:CDS
GTTAATGTTAGTGATCTGGG+TGG 0.748561 2.1:+64845129 None:intergenic
TGATCCAACTTCTTCCACAG+AGG 0.749435 2.1:+64843677 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATTATTGTTTATAATG+TGG + chr2.1:64844692-64844711 None:intergenic 15.0%
!!! ATTTTTAAAACATCAAAAAC+TGG - chr2.1:64844842-64844861 MS.gene27180:CDS 15.0%
!! ACAACATTCTTATTAAATGT+TGG + chr2.1:64845039-64845058 None:intergenic 20.0%
!! ACTTATATTGTAACATATGA+AGG - chr2.1:64844994-64845013 MS.gene27180:CDS 20.0%
!! ATTTCTTTCAACATCATTTA+TGG + chr2.1:64844880-64844899 None:intergenic 20.0%
!! TAGAAAACATAATAACCAAA+TGG - chr2.1:64844522-64844541 MS.gene27180:intron 20.0%
!! TATTGGAAAATTATAATTGG+CGG + chr2.1:64844005-64844024 None:intergenic 20.0%
!! TTTAATAAGAATGTTGTTGT+TGG - chr2.1:64845042-64845061 MS.gene27180:CDS 20.0%
!!! ATAATTTGTGGAATATTGAT+TGG + chr2.1:64844221-64844240 None:intergenic 20.0%
!!! TGTTTTCTATAAGAAAAGAA+AGG + chr2.1:64844511-64844530 None:intergenic 20.0%
!!! TTTTGAATATTTGTAAACCT+CGG + chr2.1:64844640-64844659 None:intergenic 20.0%
! AAATCAATAAATGATGTTGC+AGG - chr2.1:64844896-64844915 MS.gene27180:CDS 25.0%
! ATTGGAAAATTATAATTGGC+GGG + chr2.1:64844004-64844023 None:intergenic 25.0%
! CATTGGGAAATTATAATTTG+TGG + chr2.1:64844233-64844252 None:intergenic 25.0%
! TCTAGATTTATGAAGTCATT+TGG + chr2.1:64843659-64843678 None:intergenic 25.0%
! TTGGTCAGAAGATTATTTAA+TGG - chr2.1:64845458-64845477 MS.gene27180:CDS 25.0%
!!! ATAGTTCTATTTCTGGATAA+AGG + chr2.1:64845227-64845246 None:intergenic 25.0%
!!! GGGTATTGGAAAATTATAAT+TGG + chr2.1:64844008-64844027 None:intergenic 25.0%
AATTTGATGAACCACAAAGT+AGG - chr2.1:64845331-64845350 MS.gene27180:CDS 30.0%
ACATAATAACCAAATGGCAT+TGG - chr2.1:64844528-64844547 MS.gene27180:intron 30.0%
AGTGTTAATGTTAGTGATCT+GGG + chr2.1:64843816-64843835 None:intergenic 30.0%
ATCCTTAAACGCTAGAAATT+TGG - chr2.1:64845284-64845303 MS.gene27180:CDS 30.0%
ATGAACACTAGTGTTTATCA+GGG + chr2.1:64843966-64843985 None:intergenic 30.0%
ATGAATCCAGTTTCAGAATA+AGG + chr2.1:64845390-64845409 None:intergenic 30.0%
GTAAAATCATCATAGCAAAG+TGG + chr2.1:64843593-64843612 None:intergenic 30.0%
TAGTGTTAATGTTAGTGATC+TGG + chr2.1:64843817-64843836 None:intergenic 30.0%
TCCTTAAACGCTAGAAATTT+GGG - chr2.1:64845285-64845304 MS.gene27180:CDS 30.0%
TGAATCCAGTTTCAGAATAA+GGG + chr2.1:64845389-64845408 None:intergenic 30.0%
! AAGAGACTGAACTATTTTCT+TGG + chr2.1:64843622-64843641 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG + chr2.1:64843650-64843669 None:intergenic 30.0%
! CTCTCTAATAGTTCTATTTC+TGG + chr2.1:64845234-64845253 None:intergenic 30.0%
! GGATTTTCAAAAATGTTGGT+AGG + chr2.1:64843512-64843531 None:intergenic 30.0%
! TACAATTATATGCACTGACA+AGG + chr2.1:64844774-64844793 None:intergenic 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG + chr2.1:64843649-64843668 None:intergenic 30.0%
!! TATTCTGAAACTGGATTCAT+TGG - chr2.1:64845390-64845409 MS.gene27180:CDS 30.0%
!!! ATTGATTTTTGGCATACTAG+TGG + chr2.1:64843723-64843742 None:intergenic 30.0%
!!! TTGATTTTTGGCATACTAGT+GGG + chr2.1:64843722-64843741 None:intergenic 30.0%
ATAATTGGCGGGATATTGAT+TGG + chr2.1:64843993-64844012 None:intergenic 35.0%
ATATTTGTAAACCTCGGATG+TGG + chr2.1:64844634-64844653 None:intergenic 35.0%
ATCAATGCATGCAACATGTT+TGG + chr2.1:64844080-64844099 None:intergenic 35.0%
ATGGGCAAAAACCCATTAAA+GGG - chr2.1:64844605-64844624 MS.gene27180:CDS 35.0%
ATTACAGTGGCAGTGATAAT+GGG + chr2.1:64843899-64843918 None:intergenic 35.0%
CATGAACACTAGTGTTTATC+AGG + chr2.1:64843967-64843986 None:intergenic 35.0%
GAATGTGATGTTATTGGTAG+TGG + chr2.1:64843555-64843574 None:intergenic 35.0%
GCTATTACAAATGTAGCACT+TGG - chr2.1:64844920-64844939 MS.gene27180:CDS 35.0%
TAGAGGGAATGTGATGTTAT+TGG + chr2.1:64843561-64843580 None:intergenic 35.0%
TATGGGCAAAAACCCATTAA+AGG - chr2.1:64844604-64844623 MS.gene27180:CDS 35.0%
TCAATGCATGCAACATGTTT+GGG + chr2.1:64844079-64844098 None:intergenic 35.0%
TCTACAAACATCACAAATCC+AGG - chr2.1:64845123-64845142 MS.gene27180:CDS 35.0%
TGATACCAAACATAACAGCT+TGG - chr2.1:64845439-64845458 MS.gene27180:CDS 35.0%
TGCTCTTAGCAGATATGATT+GGG + chr2.1:64844168-64844187 None:intergenic 35.0%
TGCTTGTAGCAGATATGATA+GGG + chr2.1:64843940-64843959 None:intergenic 35.0%
TTAATGTTAGTGATCTGGGT+GGG + chr2.1:64843812-64843831 None:intergenic 35.0%
! CATCACTGTTTAAAACACGA+GGG + chr2.1:64844737-64844756 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG + chr2.1:64843648-64843667 None:intergenic 35.0%
! TATAATTTTCCAATACCCGC+TGG - chr2.1:64844010-64844029 MS.gene27180:CDS 35.0%
! TTTTCAACCTTTCTTCTTGC+TGG + chr2.1:64844955-64844974 None:intergenic 35.0%
!! ACCCAAATTTCTAGCGTTTA+AGG + chr2.1:64845289-64845308 None:intergenic 35.0%
!! CGGTGGATTTTCAAAAATGT+TGG + chr2.1:64843516-64843535 None:intergenic 35.0%
!! TTGAATTTGTTGTTGTCCAG+CGG + chr2.1:64844029-64844048 None:intergenic 35.0%
!! TTGATTGGTTTCATGAACAC+TGG + chr2.1:64843978-64843997 None:intergenic 35.0%
AAAGTGGTGTGACACTTAGA+GGG + chr2.1:64843577-64843596 None:intergenic 40.0%
ATCCAGTTTCAGAATAAGGG+AGG + chr2.1:64845386-64845405 None:intergenic 40.0%
ATCTGCAACATCACCATACT+AGG + chr2.1:64845153-64845172 None:intergenic 40.0%
CACTATGCGGATCAAGAAAA+AGG - chr2.1:64844374-64844393 MS.gene27180:CDS 40.0%
CCACAAAGTAGGAATGTTAC+AGG - chr2.1:64845342-64845361 MS.gene27180:CDS 40.0%
CCTGTAACATTCCTACTTTG+TGG + chr2.1:64845345-64845364 None:intergenic 40.0%
GATTACAGTGGCAGTGATAA+TGG + chr2.1:64843900-64843919 None:intergenic 40.0%
GCTCTTAGCAGATATGATTG+GGG + chr2.1:64844167-64844186 None:intergenic 40.0%
GCTTGTAGCAGATATGATAG+GGG + chr2.1:64843939-64843958 None:intergenic 40.0%
GTATGCACGTTCAAAATGAG+TGG + chr2.1:64844338-64844357 None:intergenic 40.0%
GTGCTCTTAGCAGATATGAT+TGG + chr2.1:64844169-64844188 None:intergenic 40.0%
GTGCTTGTAGCAGATATGAT+AGG + chr2.1:64843941-64843960 None:intergenic 40.0%
GTTAATGTTAGTGATCTGGG+TGG + chr2.1:64843813-64843832 None:intergenic 40.0%
GTTGGATGCACGATCAAAAT+GGG + chr2.1:64844113-64844132 None:intergenic 40.0%
TAATGTTAGTGATCTGGGTG+GGG + chr2.1:64843811-64843830 None:intergenic 40.0%
TATAATTTCCCAATGCACGC+TGG - chr2.1:64844238-64844257 MS.gene27180:intron 40.0%
TATAGCACACCAATGCCATT+TGG + chr2.1:64844540-64844559 None:intergenic 40.0%
TCTGACCAAGCTGTTATGTT+TGG + chr2.1:64845447-64845466 None:intergenic 40.0%
TCTGCAACATCACCATACTA+GGG + chr2.1:64845152-64845171 None:intergenic 40.0%
TGATTGTCCAGCAAGAAGAA+AGG - chr2.1:64844945-64844964 MS.gene27180:CDS 40.0%
! CCATCACTGTTTAAAACACG+AGG + chr2.1:64844738-64844757 None:intergenic 40.0%
! TTACAGTGGCAGTGATAATG+GGG + chr2.1:64843898-64843917 None:intergenic 40.0%
!! AACCTCCCTTATTCTGAAAC+TGG - chr2.1:64845381-64845400 MS.gene27180:CDS 40.0%
!! CCTCGTGTTTTAAACAGTGA+TGG - chr2.1:64844735-64844754 MS.gene27180:CDS 40.0%
!! TGAATTTGTTGTTGTCCAGC+GGG + chr2.1:64844028-64844047 None:intergenic 40.0%
!! TGATAATGGGGGTAATGGTA+GGG + chr2.1:64843886-64843905 None:intergenic 40.0%
!! TTGGTAGTGGTTTCGATTTG+AGG + chr2.1:64843542-64843561 None:intergenic 40.0%
!!! GTGGTGGTGGTATTGATTTT+TGG + chr2.1:64843734-64843753 None:intergenic 40.0%
AAATCCAGGTTCCCCTAGTA+TGG - chr2.1:64845137-64845156 MS.gene27180:CDS 45.0%
ACGTGCATACAACCATCCAT+CGG - chr2.1:64844348-64844367 MS.gene27180:CDS 45.0%
AGCAGATATGATAGGGGTAG+TGG + chr2.1:64843933-64843952 None:intergenic 45.0%
AGCAGATATGATTGGGGTAG+TGG + chr2.1:64844161-64844180 None:intergenic 45.0%
ATGGACTTCAAGTGCCTCAA+TGG - chr2.1:64845477-64845496 MS.gene27180:CDS 45.0%
CAAAGTGGTGTGACACTTAG+AGG + chr2.1:64843578-64843597 None:intergenic 45.0%
CTGCAACATCACCATACTAG+GGG + chr2.1:64845151-64845170 None:intergenic 45.0%
GATCCAACTTCTTCCACAGA+GGG + chr2.1:64845264-64845283 None:intergenic 45.0%
GATGTTGCAGATCGATCATC+CGG - chr2.1:64845161-64845180 MS.gene27180:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG + chr2.1:64844619-64844638 None:intergenic 45.0%
GGTTGGATGCACGATCAAAA+TGG + chr2.1:64844114-64844133 None:intergenic 45.0%
TGATCCAACTTCTTCCACAG+AGG + chr2.1:64845265-64845284 None:intergenic 45.0%
TGATTGATCAGCGAGAACCT+GGG + chr2.1:64845199-64845218 None:intergenic 45.0%
TGCAACGCTACCACATTTAC+TGG - chr2.1:64843485-64843504 MS.gene27180:CDS 45.0%
TTACACTCTGCGGAAGAAAC+TGG - chr2.1:64845096-64845115 MS.gene27180:CDS 45.0%
TTACCCTCTGTGGAAGAAGT+TGG - chr2.1:64845258-64845277 MS.gene27180:CDS 45.0%
TTGATTGATCAGCGAGAACC+TGG + chr2.1:64845200-64845219 None:intergenic 45.0%
! AGATATGATAGGGGTAGTGG+TGG + chr2.1:64843930-64843949 None:intergenic 45.0%
! AGATATGATTGGGGTAGTGG+TGG + chr2.1:64844158-64844177 None:intergenic 45.0%
! ATAATGGGGGTAATGGTAGG+GGG + chr2.1:64843884-64843903 None:intergenic 45.0%
! GTAGTGGTTTCGATTTGAGG+TGG + chr2.1:64843539-64843558 None:intergenic 45.0%
! GTTGGTAGGACCAGTAAATG+TGG + chr2.1:64843498-64843517 None:intergenic 45.0%
! GTTTTTGTCCAGCGTGCATT+GGG + chr2.1:64844249-64844268 None:intergenic 45.0%
!! AGGGTGCGAGTGTTTGTTTT+AGG + chr2.1:64844718-64844737 None:intergenic 45.0%
!! GATAATGGGGGTAATGGTAG+GGG + chr2.1:64843885-64843904 None:intergenic 45.0%
!! GGCATTGGTGTGCTATATGA+GGG - chr2.1:64844543-64844562 MS.gene27180:intron 45.0%
!! GTGATAATGGGGGTAATGGT+AGG + chr2.1:64843887-64843906 None:intergenic 45.0%
!! TACAGTGGCAGTGATAATGG+GGG + chr2.1:64843897-64843916 None:intergenic 45.0%
!! TGGCATTGGTGTGCTATATG+AGG - chr2.1:64844542-64844561 MS.gene27180:intron 45.0%
!! TGTTTTTGTCCAGCGTGCAT+TGG + chr2.1:64844250-64844269 None:intergenic 45.0%
AGAGAGTCACTTACCCTCTG+TGG - chr2.1:64845248-64845267 MS.gene27180:CDS 50.0%
ATACTAGTGGGAGCTGAGGT+GGG + chr2.1:64843710-64843729 None:intergenic 50.0%
ATCACCATACTAGGGGAACC+TGG + chr2.1:64845144-64845163 None:intergenic 50.0%
ATGAGCTTCCAAAAGACCCG+TGG - chr2.1:64844569-64844588 MS.gene27180:CDS 50.0%
CATATTTCCTCCATGCCCAC+GGG + chr2.1:64844588-64844607 None:intergenic 50.0%
CCATATTTCCTCCATGCCCA+CGG + chr2.1:64844589-64844608 None:intergenic 50.0%
CGGATGTGGAGACCCTTTAA+TGG + chr2.1:64844620-64844639 None:intergenic 50.0%
CGTGGGCATGGAGGAAATAT+GGG - chr2.1:64844587-64844606 MS.gene27180:CDS 50.0%
GACTTCAAGTGCCTCAATGG+TGG - chr2.1:64845480-64845499 MS.gene27180:CDS 50.0%
GGAATATAGCGCCACCATTG+AGG + chr2.1:64845494-64845513 None:intergenic 50.0%
GGATGCACGATCAAAATGGG+TGG + chr2.1:64844110-64844129 None:intergenic 50.0%
TCGAGGCGATAACTGATGGA+TGG + chr2.1:64844135-64844154 None:intergenic 50.0%
TGAGCTTCCAAAAGACCCGT+GGG - chr2.1:64844570-64844589 MS.gene27180:CDS 50.0%
TGTTGTTGTCCAGCGGGTAT+TGG + chr2.1:64844022-64844041 None:intergenic 50.0%
TTAAAGGGTCTCCACATCCG+AGG - chr2.1:64844620-64844639 MS.gene27180:CDS 50.0%
! AGTGGTGGGAATAGTGATGG+TGG + chr2.1:64843861-64843880 None:intergenic 50.0%
! ATGATAGGGGTAGTGGTGGT+CGG + chr2.1:64843926-64843945 None:intergenic 50.0%
! CATCCATCGGTTGCACTATG+CGG - chr2.1:64844361-64844380 MS.gene27180:CDS 50.0%
! GGCGATAACTGATGGATGGT+TGG + chr2.1:64844131-64844150 None:intergenic 50.0%
! GTGGTGGGAATAGTGATGGT+GGG + chr2.1:64843860-64843879 None:intergenic 50.0%
! GTGGTTTCGATTTGAGGTGG+CGG + chr2.1:64843536-64843555 None:intergenic 50.0%
!! GGCAGTGATAATGGGGGTAA+TGG + chr2.1:64843891-64843910 None:intergenic 50.0%
AGCGCAAGTCACTGGAGACT+GGG - chr2.1:64845073-64845092 MS.gene27180:CDS 55.0%
CATACTAGTGGGAGCTGAGG+TGG + chr2.1:64843711-64843730 None:intergenic 55.0%
CCGTGGGCATGGAGGAAATA+TGG - chr2.1:64844586-64844605 MS.gene27180:CDS 55.0%
CGCATAGTGCAACCGATGGA+TGG + chr2.1:64844363-64844382 None:intergenic 55.0%
GATCCGCATAGTGCAACCGA+TGG + chr2.1:64844367-64844386 None:intergenic 55.0%
GGAGACTGGGTTACACTCTG+CGG - chr2.1:64845086-64845105 MS.gene27180:CDS 55.0%
GTAATGGTAGGGGGAGTGGT+GGG + chr2.1:64843875-64843894 None:intergenic 55.0%
GTGGTCGAGGCGATAACTGA+TGG + chr2.1:64844139-64844158 None:intergenic 55.0%
GTTAGTGATCTGGGTGGGGA+TGG + chr2.1:64843807-64843826 None:intergenic 55.0%
TACATCCCAGCGCAAGTCAC+TGG - chr2.1:64845065-64845084 MS.gene27180:CDS 55.0%
TACTAGTGGGAGCTGAGGTG+GGG + chr2.1:64843709-64843728 None:intergenic 55.0%
TGGCATACTAGTGGGAGCTG+AGG + chr2.1:64843714-64843733 None:intergenic 55.0%
TTCCAAAAGACCCGTGGGCA+TGG - chr2.1:64844575-64844594 MS.gene27180:CDS 55.0%
! ACCTGGGTATTGCTGCTCTC+CGG + chr2.1:64845183-64845202 None:intergenic 55.0%
! AGTCTCCAGTGACTTGCGCT+GGG + chr2.1:64845073-64845092 None:intergenic 55.0%
! GGGAGTGGTGGGAATAGTGA+TGG + chr2.1:64843864-64843883 None:intergenic 55.0%
! GTTTCGATTTGAGGTGGCGG+TGG + chr2.1:64843533-64843552 None:intergenic 55.0%
! TGATAGGGGTAGTGGTGGTC+GGG + chr2.1:64843925-64843944 None:intergenic 55.0%
! TGGGATAGTGTAGGTGGTGG+TGG + chr2.1:64843768-64843787 None:intergenic 55.0%
!! ATAGTGTAGGTGGTGGTGGC+GGG + chr2.1:64843764-64843783 None:intergenic 55.0%
!! GATAGTGTAGGTGGTGGTGG+CGG + chr2.1:64843765-64843784 None:intergenic 55.0%
AGTGATCTGGGTGGGGATGG+TGG + chr2.1:64843804-64843823 None:intergenic 60.0%
CAAAAGACCCGTGGGCATGG+AGG - chr2.1:64844578-64844597 MS.gene27180:CDS 60.0%
CAAGGGGGGTGGGATAGTGT+AGG + chr2.1:64843777-64843796 None:intergenic 60.0%
CAGCGCAAGTCACTGGAGAC+TGG - chr2.1:64845072-64845091 MS.gene27180:CDS 60.0%
GGGTGGGATAGTGTAGGTGG+TGG + chr2.1:64843771-64843790 None:intergenic 60.0%
GGTGGTCGGGGTGATTACAG+TGG + chr2.1:64843912-64843931 None:intergenic 60.0%
TCCGGAGAGCAGCAATACCC+AGG - chr2.1:64845179-64845198 MS.gene27180:CDS 60.0%
! CAGTCTCCAGTGACTTGCGC+TGG + chr2.1:64845074-64845093 None:intergenic 60.0%
! CTCCATGCCCACGGGTCTTT+TGG + chr2.1:64844580-64844599 None:intergenic 60.0%
! GATAGGGGTAGTGGTGGTCG+GGG + chr2.1:64843924-64843943 None:intergenic 60.0%
! GATTGGGGTAGTGGTGGTCG+AGG + chr2.1:64844152-64844171 None:intergenic 60.0%
! GGTAATGGTAGGGGGAGTGG+TGG + chr2.1:64843876-64843895 None:intergenic 60.0%
!! GTGGGGATGGTGGTGGTCAA+GGG + chr2.1:64843794-64843813 None:intergenic 60.0%
!! TAGTGTAGGTGGTGGTGGCG+GGG + chr2.1:64843763-64843782 None:intergenic 60.0%
!! TGGGGATGGTGGTGGTCAAG+GGG + chr2.1:64843793-64843812 None:intergenic 60.0%
AGTGGGAGCTGAGGTGGGGA+TGG + chr2.1:64843705-64843724 None:intergenic 65.0%
GGGGGGTGGGATAGTGTAGG+TGG + chr2.1:64843774-64843793 None:intergenic 65.0%
GTGGGAGCTGAGGTGGGGAT+GGG + chr2.1:64843704-64843723 None:intergenic 65.0%
! GATCTGGGTGGGGATGGTGG+TGG + chr2.1:64843801-64843820 None:intergenic 65.0%
! GGGGGTAATGGTAGGGGGAG+TGG + chr2.1:64843879-64843898 None:intergenic 65.0%
!! AGTGTAGGTGGTGGTGGCGG+GGG + chr2.1:64843762-64843781 None:intergenic 65.0%
!! ATGGTGGTGGTCAAGGGGGG+TGG + chr2.1:64843788-64843807 None:intergenic 65.0%
!! GGGATGGTGGTGGTCAAGGG+GGG + chr2.1:64843791-64843810 None:intergenic 65.0%
!! GGGGATGGTGGTGGTCAAGG+GGG + chr2.1:64843792-64843811 None:intergenic 65.0%
!! GGTGGGGATGGTGGTGGTCA+AGG + chr2.1:64843795-64843814 None:intergenic 65.0%
!! TGGTGGTGGTCAAGGGGGGT+GGG + chr2.1:64843787-64843806 None:intergenic 65.0%
GGCGGGGGAAGATGTGGTGG+TGG + chr2.1:64843747-64843766 None:intergenic 70.0%
!! GGTGGCGGGGGAAGATGTGG+TGG + chr2.1:64843750-64843769 None:intergenic 70.0%
!! GGTGGTGGCGGGGGAAGATG+TGG + chr2.1:64843753-64843772 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 64843443 64845518 64843443 ID=MS.gene27180
chr2.1 mRNA 64843443 64845518 64843443 ID=MS.gene27180.t1;Parent=MS.gene27180
chr2.1 exon 64844566 64845518 64844566 ID=MS.gene27180.t1.exon1;Parent=MS.gene27180.t1
chr2.1 CDS 64844566 64845518 64844566 ID=cds.MS.gene27180.t1;Parent=MS.gene27180.t1
chr2.1 exon 64844320 64844436 64844320 ID=MS.gene27180.t1.exon2;Parent=MS.gene27180.t1
chr2.1 CDS 64844320 64844436 64844320 ID=cds.MS.gene27180.t1;Parent=MS.gene27180.t1
chr2.1 exon 64843443 64844043 64843443 ID=MS.gene27180.t1.exon3;Parent=MS.gene27180.t1
chr2.1 CDS 64843443 64844043 64843443 ID=cds.MS.gene27180.t1;Parent=MS.gene27180.t1
Gene Sequence

>MS.gene27180

ATGGATAATGATGATCGAGATCTCTTTTCTATTGTTCGTAGTTGCAACGCTACCACATTTACTGGTCCTACCAACATTTTTGAAAATCCACCGCCACCTCAAATCGAAACCACTACCAATAACATCACATTCCCTCTAAGTGTCACACCACTTTGCTATGATGATTTTACTTTTAACCAAGAAAATAGTTCAGTCTCTTTTGCCCCACTTAAACCAAATGACTTCATAAATCTAGATAAATTGATGATCAATTTCAATCCCATCCCCACCTCAGCTCCCACTAGTATGCCAAAAATCAATACCACCACCACATCTTCCCCCGCCACCACCACCTACACTATCCCACCCCCCTTGACCACCACCATCCCCACCCAGATCACTAACATTAACACTAGTGTTCATATTATCAACACTCCCACCATCACTATTCCCACCACTCCCCCTACCATTACCCCCATTATCACTGCCACTGTAATCACCCCGACCACCACTACCCCTATCATATCTGCTACAAGCACTACCCTGATAAACACTAGTGTTCATGAAACCAATCAATATCCCGCCAATTATAATTTTCCAATACCCGCTGGACAACAACAAATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACATGTTGCATGCATTGATATCACAGCCACCCATTTTGATCGTGCATCCAACCATCCATCAGTTATCGCCTCGACCACCACTACCCCAATCATATCTGCTAAGAGCACTACGATGACAAACACCAGTGTTCATGAAACCAATCAATATTCCACAAATTATAATTTCCCAATGCACGCTGGACAAAAACAGATTCAACAAAACATCAACAATCAAGTGTATGTTCCCAAACATGTTGCATGCATTGATATCACAACCACTCATTTTGAACGTGCATACAACCATCCATCGGTTGCACTATGCGGATCAAGAAAAAGGTAATGTATTTATTCTATTATTTCATATATTTTAATTATAAATCAATTTTATTATGTCAAAATAATTGAAATATTTGACGTAACTTAGTTCAAGTGAACTAAAATTATTTTACCTTTCTTTTCTTATAGAAAACATAATAACCAAATGGCATTGGTGTGCTATATGAGGGACGATGAGCTTCCAAAAGACCCGTGGGCATGGAGGAAATATGGGCAAAAACCCATTAAAGGGTCTCCACATCCGAGGTTTACAAATATTCAAAACTTTATCTTTAACATATTTCTCTTTTCTTCCACATTATAAACAATAATTTTGTTACCTAAAACAAACACTCGCACCCTCGTGTTTTAAACAGTGATGGTAAGCATTTAGATCCTTGTCAGTGCATATAATTGTAATTAAATTCAACATTTGTTATCTTAATCATAGTTTCGTTTGTGTTTCAATTTTTAAAACATCAAAAACTGGTGTATATTTAGTCCATAAATGATGTTGAAAGAAATCAATAAATGATGTTGCAGGAGCTATTACAAATGTAGCACTTGGTCTGATTGTCCAGCAAGAAGAAAGGTTGAAAAATGCAAAACTCAAGAGAACACTTATATTGTAACATATGAAGGAGAGCACAATCATGCAAAGCCAACATTTAATAAGAATGTTGTTGTTGGTACATCCCAGCGCAAGTCACTGGAGACTGGGTTACACTCTGCGGAAGAAACTGGATCATCTACAAACATCACAAATCCAGGTTCCCCTAGTATGGTGATGTTGCAGATCGATCATCCGGAGAGCAGCAATACCCAGGTTCTCGCTGATCAATCAAAAATCCTTTATCCAGAAATAGAACTATTAGAGAGTCACTTACCCTCTGTGGAAGAAGTTGGATCATCCTTAAACGCTAGAAATTTGGGTTCACATAACAAAATGATTATGCAATTTGATGAACCACAAAGTAGGAATGTTACAGGTGTTGTCGATGACTCAAACCTCCCTTATTCTGAAACTGGATTCATTGGAAGCTTTGATGATAATGATGACATTTTGATACCAAACATAACAGCTTGGTCAGAAGATTATTTAATGGACTTCAAGTGCCTCAATGGTGGCGCTATATTCCCTTAG
Protein sequence

>MS.gene27180.t1

MDNDDRDLFSIVRSCNATTFTGPTNIFENPPPPQIETTTNNITFPLSVTPLCYDDFTFNQENSSVSFAPLKPNDFINLDKLMINFNPIPTSAPTSMPKINTTTTSSPATTTYTIPPPLTTTIPTQITNINTSVHIINTPTITIPTTPPTITPIITATVITPTTTTPIISATSTTLINTSVHETNQYPANYNFPIPAGQQQIQQNINNQVSVPKHVACIDITATHFDRASNHPSVIASTTTTPIISAKSTTMTNTSVHETNQYSTNYNFPMHAGQKQIQQNINNQVYVPKHVACIDITTTHFERAYNHPSVALCGSRKRKHNNQMALVCYMRDDELPKDPWAWRKYGQKPIKGSPHPRSYYKCSTWSDCPARRKVEKCKTQENTYIVTYEGEHNHAKPTFNKNVVVGTSQRKSLETGLHSAEETGSSTNITNPGSPSMVMLQIDHPESSNTQVLADQSKILYPEIELLESHLPSVEEVGSSLNARNLGSHNKMIMQFDEPQSRNVTGVVDDSNLPYSETGFIGSFDDNDDILIPNITAWSEDYLMDFKCLNGGAIFP