Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27410.t1 | XP_024642081.1 | 89.2 | 269 | 23 | 1 | 1 | 269 | 1 | 263 | 5.60E-127 | 463.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27410.t1 | Q568K5 | 35.1 | 231 | 124 | 4 | 23 | 251 | 10 | 216 | 2.4e-22 | 107.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27410.t1 | A0A396HG85 | 89.2 | 269 | 23 | 1 | 1 | 269 | 1 | 263 | 4.0e-127 | 463.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27410.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27410.t1 | MTR_6g072100 | 88.973 | 263 | 23 | 1 | 1 | 263 | 1 | 257 | 5.82e-173 | 478 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27410.t1 | AT1G18335 | 51.321 | 265 | 117 | 4 | 3 | 263 | 6 | 262 | 1.16e-78 | 239 |
| MS.gene27410.t1 | AT1G18335 | 51.321 | 265 | 117 | 4 | 3 | 263 | 6 | 262 | 1.16e-78 | 239 |
| MS.gene27410.t1 | AT1G18335 | 51.136 | 264 | 117 | 4 | 3 | 262 | 6 | 261 | 2.60e-78 | 238 |
Find 54 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGTATATATTGTTTAAC+AGG | 0.288671 | 6.4:-50028763 | None:intergenic |
| TGTACATTACCGATTTGTTT+TGG | 0.337734 | 6.4:+50030017 | MS.gene27410:CDS |
| ACCATTGGATAAACTTTAGA+AGG | 0.346375 | 6.4:-50031207 | None:intergenic |
| AATTTCGAAGCAGCGATAAA+CGG | 0.367535 | 6.4:-50027428 | None:intergenic |
| ATTTCGAAGCAGCGATAAAC+GGG | 0.378315 | 6.4:-50027427 | None:intergenic |
| TATCGCTGCTTCGAAATTAA+CGG | 0.408605 | 6.4:+50027433 | MS.gene27410:CDS |
| CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6.4:+50030087 | MS.gene27410:CDS |
| ATATATACACAGACTTCTTA+AGG | 0.426646 | 6.4:+50028774 | MS.gene27410:CDS |
| CAAAGCAGCATATAGCATAA+AGG | 0.436019 | 6.4:+50027387 | MS.gene27410:CDS |
| ACCAAGGGACCACTATCTTC+TGG | 0.440378 | 6.4:-50029988 | None:intergenic |
| ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6.4:+50030074 | MS.gene27410:CDS |
| ACAAATATATAGCGTGCTTC+AGG | 0.453405 | 6.4:-50029892 | None:intergenic |
| AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6.4:+50029864 | MS.gene27410:CDS |
| CTTAACATGGAAGGGCCATA+TGG | 0.467460 | 6.4:+50029820 | MS.gene27410:CDS |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6.4:-50030092 | None:intergenic |
| CCTCTTCTTCCAAAACAAAT+CGG | 0.471830 | 6.4:-50030026 | None:intergenic |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6.4:+50030101 | MS.gene27410:CDS |
| GGCGTTGTTGTGAGTTGCAT+TGG | 0.483691 | 6.4:-50027219 | None:intergenic |
| CTCTCAGTGTGTTTAAAGTC+AGG | 0.484761 | 6.4:+50028718 | MS.gene27410:CDS |
| TCCAGAAGATAGTGGTCCCT+TGG | 0.489622 | 6.4:+50029987 | MS.gene27410:CDS |
| CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6.4:+50030075 | MS.gene27410:CDS |
| GAAGATAGTGGTCCCTTGGT+TGG | 0.495248 | 6.4:+50029991 | MS.gene27410:CDS |
| TCTTCTGGAAGATTAGTTGA+AGG | 0.500443 | 6.4:-50029973 | None:intergenic |
| TATTGAGCTTATCGCCCAAA+AGG | 0.504926 | 6.4:+50030128 | MS.gene27410:CDS |
| TCTTGCCACTCAGATCCATA+TGG | 0.513626 | 6.4:-50029835 | None:intergenic |
| TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6.4:+50030086 | MS.gene27410:CDS |
| TGAGTGGCAAGAGGAAGAAA+AGG | 0.525897 | 6.4:+50029846 | MS.gene27410:CDS |
| ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6.4:+50029812 | MS.gene27410:intron |
| GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6.4:+50030081 | MS.gene27410:CDS |
| AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6.4:+50029811 | MS.gene27410:intron |
| TATATATTGTTTAACAGGAG+AGG | 0.553807 | 6.4:-50028758 | None:intergenic |
| ACCTTCTAAAGTTTATCCAA+TGG | 0.559757 | 6.4:+50031206 | MS.gene27410:CDS |
| TGTTGTGCTAACTGTTCAAA+AGG | 0.560279 | 6.4:+50030416 | MS.gene27410:CDS |
| GACGACAACAGTGTTGATTG+AGG | 0.561027 | 6.4:+50029945 | MS.gene27410:CDS |
| CAATCTAATGGTGCAGTGAG+TGG | 0.567174 | 6.4:-50031371 | None:intergenic |
| TGTGAGTTGCATTGGTTCCA+CGG | 0.567819 | 6.4:-50027211 | None:intergenic |
| ACTAATCTTCCAGAAGATAG+TGG | 0.569548 | 6.4:+50029979 | MS.gene27410:CDS |
| ACGCTATATATTTGTGCATG+AGG | 0.569652 | 6.4:+50029900 | MS.gene27410:CDS |
| TGTAAAACCAGCAATGAACT+CGG | 0.592834 | 6.4:+50027172 | None:intergenic |
| AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6.4:-50030084 | None:intergenic |
| CATTGGTTCCACGGTCACGT+TGG | 0.600954 | 6.4:-50027202 | None:intergenic |
| AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6.4:+50030076 | MS.gene27410:CDS |
| AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6.4:-50030051 | None:intergenic |
| GTGTGTTTAAAGTCAGGACA+TGG | 0.647300 | 6.4:+50028724 | MS.gene27410:CDS |
| GAGACGCTCCAACGTGACCG+TGG | 0.649093 | 6.4:+50027194 | MS.gene27410:CDS |
| ATATGGATCTGAGTGGCAAG+AGG | 0.653218 | 6.4:+50029837 | MS.gene27410:CDS |
| TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6.4:+50029807 | MS.gene27410:intron |
| TAATGTACAAATCCAACCAA+GGG | 0.659606 | 6.4:-50030003 | None:intergenic |
| ACGCCGTCGTAACTGAGAGA+AGG | 0.663934 | 6.4:+50027237 | MS.gene27410:CDS |
| ATAAACTTTAGAAGGTGATG+TGG | 0.664725 | 6.4:-50031199 | None:intergenic |
| GTAATGTACAAATCCAACCA+AGG | 0.665929 | 6.4:-50030004 | None:intergenic |
| TAACCTTCTCTCAGTTACGA+CGG | 0.694983 | 6.4:-50027240 | None:intergenic |
| GATAAACGGGAAAAGAAGCG+AGG | 0.710792 | 6.4:-50027414 | None:intergenic |
| AAGGGCCATATGGATCTGAG+TGG | 0.737924 | 6.4:+50029830 | MS.gene27410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATAAAAAAAAAA+GGG | + | chr6.4:50028870-50028889 | MS.gene27410:intron | 0.0% |
| !! | TATATATATATAAAAAAAAA+AGG | + | chr6.4:50028869-50028888 | MS.gene27410:intron | 0.0% |
| !! | ATATAATATAGATATATATG+TGG | - | chr6.4:50030730-50030749 | None:intergenic | 10.0% |
| !! | GAAATACAATTAAATTAATA+AGG | - | chr6.4:50030604-50030623 | None:intergenic | 10.0% |
| !! | ATTAGTTATATGATTATGAT+CGG | + | chr6.4:50027488-50027507 | MS.gene27410:intron | 15.0% |
| !! | ATTCTCATAATAAAAAGTTA+AGG | + | chr6.4:50030949-50030968 | MS.gene27410:intron | 15.0% |
| !! | CATATCATTAACATAAAAAA+GGG | - | chr6.4:50029733-50029752 | None:intergenic | 15.0% |
| !! | TGTAATAGACTTATATATAA+GGG | + | chr6.4:50030751-50030770 | MS.gene27410:intron | 15.0% |
| !! | TTAATATTTCAACATGATTA+TGG | + | chr6.4:50028611-50028630 | MS.gene27410:intron | 15.0% |
| !!! | CAATTTATTGATTTATTTAC+AGG | + | chr6.4:50030321-50030340 | MS.gene27410:intron | 15.0% |
| !! | ATATATACATTTCAGTTAGA+GGG | - | chr6.4:50029083-50029102 | None:intergenic | 20.0% |
| !! | ATATCAAAGATCATATTAGA+TGG | - | chr6.4:50030362-50030381 | None:intergenic | 20.0% |
| !! | ATCAATTAAGTTAAACACAA+TGG | - | chr6.4:50028202-50028221 | None:intergenic | 20.0% |
| !! | ATTTGTTTATACTATCATGA+GGG | + | chr6.4:50029651-50029670 | MS.gene27410:intron | 20.0% |
| !! | GAAAAATCTAGAAAGTAATT+AGG | - | chr6.4:50031091-50031110 | None:intergenic | 20.0% |
| !! | GAATTATGAAAGTAGAAAAT+AGG | - | chr6.4:50031024-50031043 | None:intergenic | 20.0% |
| !! | GCATATCATTAACATAAAAA+AGG | - | chr6.4:50029734-50029753 | None:intergenic | 20.0% |
| !! | GTGTAATAGACTTATATATA+AGG | + | chr6.4:50030750-50030769 | MS.gene27410:intron | 20.0% |
| !! | TAACTACATTACTAAATTAC+AGG | + | chr6.4:50028542-50028561 | MS.gene27410:intron | 20.0% |
| !! | TAGTGTTTGATAAAAAATAG+CGG | + | chr6.4:50028067-50028086 | MS.gene27410:intron | 20.0% |
| !! | TATCAAAGATCATATTAGAT+GGG | - | chr6.4:50030361-50030380 | None:intergenic | 20.0% |
| !!! | AAGTTTGTTTATTGAATTAG+CGG | - | chr6.4:50028423-50028442 | None:intergenic | 20.0% |
| !!! | ATTATAGTCTTAGAAACTAT+AGG | - | chr6.4:50028586-50028605 | None:intergenic | 20.0% |
| !!! | ATTTTTACACTAGTAAACTA+AGG | + | chr6.4:50030457-50030476 | MS.gene27410:CDS | 20.0% |
| !!! | TAAGCTATTTTTATAGCAAA+AGG | - | chr6.4:50027741-50027760 | None:intergenic | 20.0% |
| !!! | TTAGACAAGTTAAGTTTTTT+TGG | - | chr6.4:50029792-50029811 | None:intergenic | 20.0% |
| !!! | TTTCATAACACTTATGATTT+TGG | - | chr6.4:50031245-50031264 | None:intergenic | 20.0% |
| ! | AACGAAGACTAAACATAAAA+AGG | - | chr6.4:50031135-50031154 | None:intergenic | 25.0% |
| ! | AAGCTATATTGGAGTAATTA+TGG | - | chr6.4:50027671-50027690 | None:intergenic | 25.0% |
| ! | AATTACTCCAATATAGCTTA+CGG | + | chr6.4:50027672-50027691 | MS.gene27410:intron | 25.0% |
| ! | ACGAAGACTAAACATAAAAA+GGG | - | chr6.4:50031134-50031153 | None:intergenic | 25.0% |
| ! | AGAAGTTAGTTACACATTAA+AGG | + | chr6.4:50027529-50027548 | MS.gene27410:intron | 25.0% |
| ! | AGAGATAAAAAATTCAACGA+TGG | - | chr6.4:50030504-50030523 | None:intergenic | 25.0% |
| ! | ATATATACACAGACTTCTTA+AGG | + | chr6.4:50028774-50028793 | MS.gene27410:CDS | 25.0% |
| ! | ATTTATTTGAGCTTATCTAC+TGG | - | chr6.4:50028020-50028039 | None:intergenic | 25.0% |
| ! | CAAGTTTGATATGAATGAAA+GGG | + | chr6.4:50030540-50030559 | MS.gene27410:intron | 25.0% |
| ! | CATATATACATTTCAGTTAG+AGG | - | chr6.4:50029084-50029103 | None:intergenic | 25.0% |
| ! | CATTTGTTTATACTATCATG+AGG | + | chr6.4:50029650-50029669 | MS.gene27410:intron | 25.0% |
| ! | CTGTGTATATATTGTTTAAC+AGG | - | chr6.4:50028766-50028785 | None:intergenic | 25.0% |
| ! | GAATTATTGTTATGTTGCAA+AGG | + | chr6.4:50030200-50030219 | MS.gene27410:intron | 25.0% |
| ! | TAAGTAACTCTAGTATTGTT+TGG | - | chr6.4:50028838-50028857 | None:intergenic | 25.0% |
| ! | TAATGTAGTTAGTACAAGTT+GGG | - | chr6.4:50028533-50028552 | None:intergenic | 25.0% |
| ! | TATATACATTTCAGTTAGAG+GGG | - | chr6.4:50029082-50029101 | None:intergenic | 25.0% |
| ! | TATATATTGTTTAACAGGAG+AGG | - | chr6.4:50028761-50028780 | None:intergenic | 25.0% |
| ! | TCAAGTTTGATATGAATGAA+AGG | + | chr6.4:50030539-50030558 | MS.gene27410:intron | 25.0% |
| ! | TCTTTCAATTAAGACAATGA+GGG | + | chr6.4:50028281-50028300 | MS.gene27410:intron | 25.0% |
| ! | TTCTTTCAATTAAGACAATG+AGG | + | chr6.4:50028280-50028299 | MS.gene27410:intron | 25.0% |
| ! | TTTCAATGAATAAGCTAACT+CGG | - | chr6.4:50029757-50029776 | None:intergenic | 25.0% |
| !! | AAAATCAGACACATATTTTC+TGG | - | chr6.4:50030641-50030660 | None:intergenic | 25.0% |
| !! | ACAATTATACTTGTTGAGTA+TGG | + | chr6.4:50029116-50029135 | MS.gene27410:intron | 25.0% |
| !! | AGTTAGCTTATTCATTGAAA+TGG | + | chr6.4:50029757-50029776 | MS.gene27410:intron | 25.0% |
| !! | ATAACACTTATGATTTTGGA+GGG | - | chr6.4:50031241-50031260 | None:intergenic | 25.0% |
| !! | CTTATGAAATTTGAAGTGTT+TGG | + | chr6.4:50028144-50028163 | MS.gene27410:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | + | chr6.4:50029758-50029777 | MS.gene27410:intron | 25.0% |
| !! | TTACAATGAAGATGCATTTT+TGG | - | chr6.4:50029578-50029597 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGATACTGTT+TGG | + | chr6.4:50027589-50027608 | MS.gene27410:intron | 25.0% |
| !!! | ATAATATTTGATTTTAGCCC+AGG | + | chr6.4:50031046-50031065 | MS.gene27410:intron | 25.0% |
| !!! | ATAATTTTGACCTTATTTCC+AGG | + | chr6.4:50028694-50028713 | MS.gene27410:intron | 25.0% |
| !!! | ATATTTTCTGGAATGCATTA+AGG | - | chr6.4:50030629-50030648 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGCTATTT+TGG | + | chr6.4:50027905-50027924 | MS.gene27410:intron | 25.0% |
| !!! | TAAGTTTTGTGATACTGTTT+GGG | + | chr6.4:50027590-50027609 | MS.gene27410:intron | 25.0% |
| !!! | TCTTTTTTTGTAGACATATG+CGG | - | chr6.4:50030681-50030700 | None:intergenic | 25.0% |
| AAAAAGTTAAGGATCTTTGC+AGG | + | chr6.4:50030960-50030979 | MS.gene27410:intron | 30.0% | |
| AAGACTAAACATAAAAAGGG+AGG | - | chr6.4:50031131-50031150 | None:intergenic | 30.0% | |
| ACCATTGGATAAACTTTAGA+AGG | - | chr6.4:50031210-50031229 | None:intergenic | 30.0% | |
| AGACTAAACATAAAAAGGGA+GGG | - | chr6.4:50031130-50031149 | None:intergenic | 30.0% | |
| AGTTCATACACATAAAGTAC+CGG | - | chr6.4:50030054-50030073 | None:intergenic | 30.0% | |
| ATAAAAAAAAAAGGGCAACC+CGG | + | chr6.4:50028878-50028897 | MS.gene27410:intron | 30.0% | |
| GAACTTGAAGTAAGAACAAT+GGG | + | chr6.4:50030900-50030919 | MS.gene27410:intron | 30.0% | |
| GATATCTTGATAGATAACCT+GGG | - | chr6.4:50031066-50031085 | None:intergenic | 30.0% | |
| GCATTTAACAAACTGAAAAG+CGG | - | chr6.4:50027462-50027481 | None:intergenic | 30.0% | |
| GTAATGTAGTTAGTACAAGT+TGG | - | chr6.4:50028534-50028553 | None:intergenic | 30.0% | |
| TAAATAAACGCAGACAAGAA+CGG | - | chr6.4:50029451-50029470 | None:intergenic | 30.0% | |
| TAATAATGATTGACATGTCG+AGG | - | chr6.4:50030814-50030833 | None:intergenic | 30.0% | |
| TAATGTACAAATCCAACCAA+GGG | - | chr6.4:50030006-50030025 | None:intergenic | 30.0% | |
| TACGACAATCATGAACAAAA+GGG | - | chr6.4:50029537-50029556 | None:intergenic | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | - | chr6.4:50027555-50027574 | None:intergenic | 30.0% | |
| TCTAAATCTACAGCTTAACA+TGG | + | chr6.4:50029807-50029826 | MS.gene27410:intron | 30.0% | |
| TGAACTTGAAGTAAGAACAA+TGG | + | chr6.4:50030899-50030918 | MS.gene27410:intron | 30.0% | |
| TGATATCTTGATAGATAACC+TGG | - | chr6.4:50031067-50031086 | None:intergenic | 30.0% | |
| TGTGATATATGCTGCAAATA+AGG | + | chr6.4:50027783-50027802 | MS.gene27410:intron | 30.0% | |
| TTACGACAATCATGAACAAA+AGG | - | chr6.4:50029538-50029557 | None:intergenic | 30.0% | |
| TTATCTGTTTGTGTAGAGTT+GGG | + | chr6.4:50029468-50029487 | MS.gene27410:intron | 30.0% | |
| TTCAATGAATAAGCTAACTC+GGG | - | chr6.4:50029756-50029775 | None:intergenic | 30.0% | |
| TTGTTCATGATTGTCGTAAT+TGG | + | chr6.4:50029539-50029558 | MS.gene27410:intron | 30.0% | |
| TTTATCTGTTTGTGTAGAGT+TGG | + | chr6.4:50029467-50029486 | MS.gene27410:intron | 30.0% | |
| ! | AATAAGGTGTTTATCCAAAC+AGG | + | chr6.4:50027799-50027818 | MS.gene27410:intron | 30.0% |
| ! | ATAAACTTTAGAAGGTGATG+TGG | - | chr6.4:50031202-50031221 | None:intergenic | 30.0% |
| ! | CATAACACTTATGATTTTGG+AGG | - | chr6.4:50031242-50031261 | None:intergenic | 30.0% |
| ! | TGGGTGTAGCTTAAATTTTT+GGG | - | chr6.4:50028514-50028533 | None:intergenic | 30.0% |
| ! | TTGGGTGTAGCTTAAATTTT+TGG | - | chr6.4:50028515-50028534 | None:intergenic | 30.0% |
| !! | AAACACCATAAAGTACCTTT+TGG | - | chr6.4:50030146-50030165 | None:intergenic | 30.0% |
| !! | AACACCATAAAGTACCTTTT+GGG | - | chr6.4:50030145-50030164 | None:intergenic | 30.0% |
| !! | ACCTTCTAAAGTTTATCCAA+TGG | + | chr6.4:50031206-50031225 | MS.gene27410:CDS | 30.0% |
| !! | ATTTAGACACTCGTCATTTT+AGG | - | chr6.4:50028379-50028398 | None:intergenic | 30.0% |
| !! | TAACACTTATGATTTTGGAG+GGG | - | chr6.4:50031240-50031259 | None:intergenic | 30.0% |
| !! | TTTAGTCTTCGTTTTGTTGA+CGG | + | chr6.4:50031142-50031161 | MS.gene27410:intron | 30.0% |
| !!! | CGAAGCTAAAACTATTTTTG+AGG | + | chr6.4:50031344-50031363 | MS.gene27410:CDS | 30.0% |
| !!! | TGTACATTACCGATTTGTTT+TGG | + | chr6.4:50030017-50030036 | MS.gene27410:CDS | 30.0% |
| AAAGGTGAAGCGTATAGAAA+TGG | + | chr6.4:50029864-50029883 | MS.gene27410:CDS | 35.0% | |
| AAGCACTTAGGATATTGCTT+GGG | - | chr6.4:50027994-50028013 | None:intergenic | 35.0% | |
| AAGGACACAACTTATAGTCT+AGG | + | chr6.4:50030219-50030238 | MS.gene27410:intron | 35.0% | |
| AATCTACAGCTTAACATGGA+AGG | + | chr6.4:50029811-50029830 | MS.gene27410:intron | 35.0% | |
| AATGCGTACAATACACCAAA+TGG | - | chr6.4:50028948-50028967 | None:intergenic | 35.0% | |
| AATTTCGAAGCAGCGATAAA+CGG | - | chr6.4:50027431-50027450 | None:intergenic | 35.0% | |
| ACAAATATATAGCGTGCTTC+AGG | - | chr6.4:50029895-50029914 | None:intergenic | 35.0% | |
| ACCAAACTGCTAACTTATAG+CGG | - | chr6.4:50028342-50028361 | None:intergenic | 35.0% | |
| ACGAAATAAGCTGTTTATCC+AGG | - | chr6.4:50027838-50027857 | None:intergenic | 35.0% | |
| ACGCTATATATTTGTGCATG+AGG | + | chr6.4:50029900-50029919 | MS.gene27410:CDS | 35.0% | |
| ACTAATCTTCCAGAAGATAG+TGG | + | chr6.4:50029979-50029998 | MS.gene27410:CDS | 35.0% | |
| AGCTTATTCATTGAAATGGG+TGG | + | chr6.4:50029761-50029780 | MS.gene27410:intron | 35.0% | |
| AGGACACAACTTATAGTCTA+GGG | + | chr6.4:50030220-50030239 | MS.gene27410:intron | 35.0% | |
| AGGCTTATACGAAAGCAATT+AGG | - | chr6.4:50030584-50030603 | None:intergenic | 35.0% | |
| ATCAATCCAAACAGACCATT+AGG | + | chr6.4:50028038-50028057 | MS.gene27410:intron | 35.0% | |
| ATCTACAGCTTAACATGGAA+GGG | + | chr6.4:50029812-50029831 | MS.gene27410:intron | 35.0% | |
| CAAACACTAACAAAGCCTAA+TGG | - | chr6.4:50028056-50028075 | None:intergenic | 35.0% | |
| CAAAGCAGCATATAGCATAA+AGG | + | chr6.4:50027387-50027406 | MS.gene27410:CDS | 35.0% | |
| CAAATAACCACATGATGCTA+GGG | - | chr6.4:50030785-50030804 | None:intergenic | 35.0% | |
| CAGTATCACAAAACTTATGC+TGG | - | chr6.4:50027587-50027606 | None:intergenic | 35.0% | |
| CCTCTTCTTCCAAAACAAAT+CGG | - | chr6.4:50030029-50030048 | None:intergenic | 35.0% | |
| GACTAAACATAAAAAGGGAG+GGG | - | chr6.4:50031129-50031148 | None:intergenic | 35.0% | |
| GCTTATTCATTGAAATGGGT+GGG | + | chr6.4:50029762-50029781 | MS.gene27410:intron | 35.0% | |
| GGAAAACTACAACAGTCATT+CGG | + | chr6.4:50029387-50029406 | MS.gene27410:intron | 35.0% | |
| GGCTTATACGAAAGCAATTA+GGG | - | chr6.4:50030583-50030602 | None:intergenic | 35.0% | |
| GTAATGTACAAATCCAACCA+AGG | - | chr6.4:50030007-50030026 | None:intergenic | 35.0% | |
| GTTGTTGTCATGTGACTAAA+AGG | - | chr6.4:50029037-50029056 | None:intergenic | 35.0% | |
| TAAGCACTTAGGATATTGCT+TGG | - | chr6.4:50027995-50028014 | None:intergenic | 35.0% | |
| TATCGCTGCTTCGAAATTAA+CGG | + | chr6.4:50027433-50027452 | MS.gene27410:CDS | 35.0% | |
| TGTTGTGCTAACTGTTCAAA+AGG | + | chr6.4:50030416-50030435 | MS.gene27410:CDS | 35.0% | |
| TTACACATTAAAGGCCTGTT+TGG | + | chr6.4:50027538-50027557 | MS.gene27410:intron | 35.0% | |
| TTGAGTATGGCTCAAATTCA+CGG | + | chr6.4:50029129-50029148 | MS.gene27410:intron | 35.0% | |
| TTTCTGTTCTCATATGCAGA+TGG | + | chr6.4:50031284-50031303 | MS.gene27410:intron | 35.0% | |
| ! | ACTTTTCTTGTAGAACTGCA+TGG | + | chr6.4:50030389-50030408 | MS.gene27410:intron | 35.0% |
| ! | ATATGTGTCTGATTTTGAGC+AGG | + | chr6.4:50030645-50030664 | MS.gene27410:intron | 35.0% |
| ! | CGTGAATGAAGAAAGTTTTG+AGG | - | chr6.4:50027293-50027312 | None:intergenic | 35.0% |
| ! | CTTTTCTTGTAGAACTGCAT+GGG | + | chr6.4:50030390-50030409 | MS.gene27410:intron | 35.0% |
| ! | GGGTGTAGCTTAAATTTTTG+GGG | - | chr6.4:50028513-50028532 | None:intergenic | 35.0% |
| ! | GTTGTTTCCGTAAGCTATAT+TGG | - | chr6.4:50027682-50027701 | None:intergenic | 35.0% |
| ! | GTTTTCCAATAATGCAATGC+TGG | - | chr6.4:50029374-50029393 | None:intergenic | 35.0% |
| ! | TCTTCTGGAAGATTAGTTGA+AGG | - | chr6.4:50029976-50029995 | None:intergenic | 35.0% |
| ! | TTTGGTGTATTGTACGCATT+TGG | + | chr6.4:50028948-50028967 | MS.gene27410:intron | 35.0% |
| !! | AACACTTATGATTTTGGAGG+GGG | - | chr6.4:50031239-50031258 | None:intergenic | 35.0% |
| AAACTGTACCATGACCATGA+GGG | - | chr6.4:50029292-50029311 | None:intergenic | 40.0% | |
| AACAGCCTCTTGTGTAAAAC+AGG | - | chr6.4:50028994-50029013 | None:intergenic | 40.0% | |
| ACAAAGCCTAATGGTCTGTT+TGG | - | chr6.4:50028047-50028066 | None:intergenic | 40.0% | |
| ACAAGAACGGACATGGAATT+CGG | - | chr6.4:50029438-50029457 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | - | chr6.4:50028993-50029012 | None:intergenic | 40.0% | |
| AGATATCTCTCGTGACTCTT+GGG | - | chr6.4:50029505-50029524 | None:intergenic | 40.0% | |
| AGCTTCCAGCATTGCATTAT+TGG | + | chr6.4:50029366-50029385 | MS.gene27410:intron | 40.0% | |
| AGGATTGGGAAAGCTTCTAA+TGG | + | chr6.4:50030101-50030120 | MS.gene27410:CDS | 40.0% | |
| ATGGTCATGGTACAGTTTAG+GGG | + | chr6.4:50029294-50029313 | MS.gene27410:intron | 40.0% | |
| ATGTTTACCCTAGCATCATG+TGG | + | chr6.4:50030775-50030794 | MS.gene27410:intron | 40.0% | |
| ATTTCGAAGCAGCGATAAAC+GGG | - | chr6.4:50027430-50027449 | None:intergenic | 40.0% | |
| CATGGTCATGGTACAGTTTA+GGG | + | chr6.4:50029293-50029312 | MS.gene27410:intron | 40.0% | |
| CATTAAAGGCCTGTTTGGAT+TGG | + | chr6.4:50027543-50027562 | MS.gene27410:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr6.4:50028944-50028963 | None:intergenic | 40.0% | |
| CTCTTGTGTAAAACAGGGTA+AGG | - | chr6.4:50028988-50029007 | None:intergenic | 40.0% | |
| CTTTGCGAGAAGCTGAAAAA+CGG | - | chr6.4:50027344-50027363 | None:intergenic | 40.0% | |
| GCAAATAACCACATGATGCT+AGG | - | chr6.4:50030786-50030805 | None:intergenic | 40.0% | |
| GTCATGTGACTAAAAGGTCA+CGG | - | chr6.4:50029031-50029050 | None:intergenic | 40.0% | |
| GTTATGACTACGATCTACGA+GGG | + | chr6.4:50029246-50029265 | MS.gene27410:intron | 40.0% | |
| TAAACTGTACCATGACCATG+AGG | - | chr6.4:50029293-50029312 | None:intergenic | 40.0% | |
| TAACCTTCTCTCAGTTACGA+CGG | - | chr6.4:50027243-50027262 | None:intergenic | 40.0% | |
| TAGATATCTCTCGTGACTCT+TGG | - | chr6.4:50029506-50029525 | None:intergenic | 40.0% | |
| TAGATCGTAGTCATAACCCT+AGG | - | chr6.4:50029243-50029262 | None:intergenic | 40.0% | |
| TAGGAATAAGCCATGCTCAA+AGG | - | chr6.4:50029224-50029243 | None:intergenic | 40.0% | |
| TATTGAGCTTATCGCCCAAA+AGG | + | chr6.4:50030128-50030147 | MS.gene27410:CDS | 40.0% | |
| TCATGGTCATGGTACAGTTT+AGG | + | chr6.4:50029292-50029311 | MS.gene27410:intron | 40.0% | |
| TCATGTGACTAAAAGGTCAC+GGG | - | chr6.4:50029030-50029049 | None:intergenic | 40.0% | |
| TCCGCTATAAGTTAGCAGTT+TGG | + | chr6.4:50028338-50028357 | MS.gene27410:intron | 40.0% | |
| TTGAGCATGGCTTATTCCTA+GGG | + | chr6.4:50029224-50029243 | MS.gene27410:intron | 40.0% | |
| TTTAAACACACTGAGAGACC+TGG | - | chr6.4:50028715-50028734 | None:intergenic | 40.0% | |
| TTTGAGCATGGCTTATTCCT+AGG | + | chr6.4:50029223-50029242 | MS.gene27410:intron | 40.0% | |
| TTTGTAGACATATGCGGTTC+AGG | - | chr6.4:50030675-50030694 | None:intergenic | 40.0% | |
| TTTGTGTAGAGTTGGGTTTG+CGG | + | chr6.4:50029475-50029494 | MS.gene27410:intron | 40.0% | |
| ! | CATTCGGTTGTTTGAGATGT+AGG | + | chr6.4:50029403-50029422 | MS.gene27410:intron | 40.0% |
| ! | CTCTCAGTGTGTTTAAAGTC+AGG | + | chr6.4:50028718-50028737 | MS.gene27410:CDS | 40.0% |
| ! | CTTACCCTGTTTTACACAAG+AGG | + | chr6.4:50028986-50029005 | MS.gene27410:intron | 40.0% |
| ! | GTGTGTTTAAAGTCAGGACA+TGG | + | chr6.4:50028724-50028743 | MS.gene27410:CDS | 40.0% |
| ! | GTTTGAGATGTAGGCACAAT+TGG | + | chr6.4:50029412-50029431 | MS.gene27410:intron | 40.0% |
| ! | GTTTTTGCCTTGAAATCTCG+TGG | + | chr6.4:50029696-50029715 | MS.gene27410:intron | 40.0% |
| !! | ACACTTATGATTTTGGAGGG+GGG | - | chr6.4:50031238-50031257 | None:intergenic | 40.0% |
| !! | ATCGCCCAAAAGGTACTTTA+TGG | + | chr6.4:50030138-50030157 | MS.gene27410:intron | 40.0% |
| !! | ATCTACTGGCTTAAGCACTT+AGG | - | chr6.4:50028006-50028025 | None:intergenic | 40.0% |
| !!! | CCGATTTGTTTTGGAAGAAG+AGG | + | chr6.4:50030026-50030045 | MS.gene27410:CDS | 40.0% |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | + | chr6.4:50030032-50030051 | MS.gene27410:CDS | 40.0% |
| ATATGGATCTGAGTGGCAAG+AGG | + | chr6.4:50029837-50029856 | MS.gene27410:CDS | 45.0% | |
| CACTGAGAGACCTGGAAATA+AGG | - | chr6.4:50028707-50028726 | None:intergenic | 45.0% | |
| CGAGAAGCTGAAAAACGGAA+CGG | - | chr6.4:50027339-50027358 | None:intergenic | 45.0% | |
| CTTAACATGGAAGGGCCATA+TGG | + | chr6.4:50029820-50029839 | MS.gene27410:CDS | 45.0% | |
| GAGAAGCTGAAAAACGGAAC+GGG | - | chr6.4:50027338-50027357 | None:intergenic | 45.0% | |
| GATAAACGGGAAAAGAAGCG+AGG | - | chr6.4:50027417-50027436 | None:intergenic | 45.0% | |
| GATCTGTAAGCGCAATGTAG+TGG | + | chr6.4:50029184-50029203 | MS.gene27410:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr6.4:50028945-50028964 | None:intergenic | 45.0% | |
| GGCTCAAATTCACGGATAAG+TGG | + | chr6.4:50029137-50029156 | MS.gene27410:intron | 45.0% | |
| GGTTATGACTACGATCTACG+AGG | + | chr6.4:50029245-50029264 | MS.gene27410:intron | 45.0% | |
| GTGTGATCCACGAGATTTCA+AGG | - | chr6.4:50029706-50029725 | None:intergenic | 45.0% | |
| GTTTATCCAGGCAGAGACTT+CGG | - | chr6.4:50027826-50027845 | None:intergenic | 45.0% | |
| TCTTGCCACTCAGATCCATA+TGG | - | chr6.4:50029838-50029857 | None:intergenic | 45.0% | |
| TGAGTGGCAAGAGGAAGAAA+AGG | + | chr6.4:50029846-50029865 | MS.gene27410:CDS | 45.0% | |
| TTCAGTTAGAGGGGTAACCT+TGG | - | chr6.4:50029073-50029092 | None:intergenic | 45.0% | |
| TTTATCCAGGCAGAGACTTC+GGG | - | chr6.4:50027825-50027844 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr6.4:50028997-50029016 | MS.gene27410:intron | 45.0% |
| !! | ACACTCGTCATTTTAGGCTC+TGG | - | chr6.4:50028373-50028392 | None:intergenic | 45.0% |
| !! | GACGACAACAGTGTTGATTG+AGG | + | chr6.4:50029945-50029964 | MS.gene27410:CDS | 45.0% |
| !! | TCGTCATTTTAGGCTCTGGT+TGG | - | chr6.4:50028369-50028388 | None:intergenic | 45.0% |
| !! | TGTGAGTTGCATTGGTTCCA+CGG | - | chr6.4:50027214-50027233 | None:intergenic | 45.0% |
| AAAACCTAGCCGTTGTGCCA+AGG | - | chr6.4:50029681-50029700 | None:intergenic | 50.0% | |
| AACGCAGACAAGAACGGACA+TGG | - | chr6.4:50029445-50029464 | None:intergenic | 50.0% | |
| AAGGGCCATATGGATCTGAG+TGG | + | chr6.4:50029830-50029849 | MS.gene27410:CDS | 50.0% | |
| ACCAAGGGACCACTATCTTC+TGG | - | chr6.4:50029991-50030010 | None:intergenic | 50.0% | |
| ACTATCATGAGGGCAAGCCT+TGG | + | chr6.4:50029661-50029680 | MS.gene27410:intron | 50.0% | |
| ACTCACTATGCTCGAGTGTC+TGG | - | chr6.4:50029163-50029182 | None:intergenic | 50.0% | |
| AGACACTCGAGCATAGTGAG+TGG | + | chr6.4:50029162-50029181 | MS.gene27410:intron | 50.0% | |
| AGAGGTCATGCCTTTGAGCA+TGG | + | chr6.4:50029211-50029230 | MS.gene27410:intron | 50.0% | |
| ATCTACGAGGGTTGAGAGTG+CGG | + | chr6.4:50029258-50029277 | MS.gene27410:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr6.4:50029053-50029072 | MS.gene27410:intron | 50.0% | |
| GGCGTTGTTGTGAGTTGCAT+TGG | - | chr6.4:50027222-50027241 | None:intergenic | 50.0% | |
| ! | GAAGATAGTGGTCCCTTGGT+TGG | + | chr6.4:50029991-50030010 | MS.gene27410:CDS | 50.0% |
| ! | TCCAGAAGATAGTGGTCCCT+TGG | + | chr6.4:50029987-50030006 | MS.gene27410:CDS | 50.0% |
| !! | GCGCAATGTAGTGGATTGAG+AGG | + | chr6.4:50029193-50029212 | MS.gene27410:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr6.4:50029018-50029037 | None:intergenic | 55.0% | |
| AATCCTTTCCCCTGGACACG+AGG | - | chr6.4:50030087-50030106 | None:intergenic | 55.0% | |
| ACAAGAGCTCCCGCATATGC+AGG | + | chr6.4:50028904-50028923 | MS.gene27410:intron | 55.0% | |
| ACGCCGTCGTAACTGAGAGA+AGG | + | chr6.4:50027237-50027256 | MS.gene27410:CDS | 55.0% | |
| CAAGAGCTCCCGCATATGCA+GGG | + | chr6.4:50028905-50028924 | MS.gene27410:intron | 55.0% | |
| CGTGTCCAGGGGAAAGGATT+GGG | + | chr6.4:50030087-50030106 | MS.gene27410:CDS | 55.0% | |
| GCTTTCCCAATCCTTTCCCC+TGG | - | chr6.4:50030095-50030114 | None:intergenic | 55.0% | |
| TCGTGTCCAGGGGAAAGGAT+TGG | + | chr6.4:50030086-50030105 | MS.gene27410:CDS | 55.0% | |
| ! | TCTACGAGGGTTGAGAGTGC+GGG | + | chr6.4:50029259-50029278 | MS.gene27410:intron | 55.0% |
| ! | TGGAGGGGGGTACATACCAT+TGG | - | chr6.4:50031225-50031244 | None:intergenic | 55.0% |
| !! | CATTGGTTCCACGGTCACGT+TGG | - | chr6.4:50027205-50027224 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr6.4:50029064-50029083 | None:intergenic | 60.0% | |
| ATGCGGGAGCTCTTGTGCAC+CGG | - | chr6.4:50028900-50028919 | None:intergenic | 60.0% | |
| CAAGCCTTGGCACAACGGCT+AGG | + | chr6.4:50029674-50029693 | MS.gene27410:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr6.4:50028917-50028936 | MS.gene27410:intron | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr6.4:50028917-50028936 | None:intergenic | 60.0% | |
| GAGGGCAAGCCTTGGCACAA+CGG | + | chr6.4:50029669-50029688 | MS.gene27410:intron | 60.0% | |
| GCAGAGACTTCGGGCCTGTT+TGG | - | chr6.4:50027816-50027835 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr6.4:50028916-50028935 | MS.gene27410:intron | 60.0% | |
| GGGCAAAGCCCTCATGGTCA+TGG | + | chr6.4:50029281-50029300 | MS.gene27410:intron | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr6.4:50028916-50028935 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr6.4:50028932-50028951 | None:intergenic | 60.0% |
| ! | CTACGAGGGTTGAGAGTGCG+GGG | + | chr6.4:50029260-50029279 | MS.gene27410:intron | 60.0% |
| ! | TACGAGGGTTGAGAGTGCGG+GGG | + | chr6.4:50029261-50029280 | MS.gene27410:intron | 60.0% |
| ACAGCTCGAGCCTCGTGTCC+AGG | + | chr6.4:50030074-50030093 | MS.gene27410:CDS | 65.0% | |
| ACAGGCCCGAAGTCTCTGCC+TGG | + | chr6.4:50027817-50027836 | MS.gene27410:intron | 65.0% | |
| AGCTCGAGCCTCGTGTCCAG+GGG | + | chr6.4:50030076-50030095 | MS.gene27410:CDS | 65.0% | |
| CAGCTCGAGCCTCGTGTCCA+GGG | + | chr6.4:50030075-50030094 | MS.gene27410:CDS | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr6.4:50028915-50028934 | MS.gene27410:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr6.4:50028930-50028949 | MS.gene27410:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr6.4:50028911-50028930 | MS.gene27410:intron | 65.0% | |
| GAGACGCTCCAACGTGACCG+TGG | + | chr6.4:50027194-50027213 | MS.gene27410:CDS | 65.0% | |
| GAGCCTCGTGTCCAGGGGAA+AGG | + | chr6.4:50030081-50030100 | MS.gene27410:CDS | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr6.4:50028910-50028929 | MS.gene27410:intron | 65.0% | |
| TGCGGGAGCTCTTGTGCACC+GGG | - | chr6.4:50028899-50028918 | None:intergenic | 65.0% | |
| GTGCGGGGGCAAAGCCCTCA+TGG | + | chr6.4:50029275-50029294 | MS.gene27410:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 50027185 | 50031389 | 50027185 | ID=MS.gene27410 |
| chr6.4 | mRNA | 50027185 | 50031389 | 50027185 | ID=MS.gene27410.t1;Parent=MS.gene27410 |
| chr6.4 | exon | 50027185 | 50027274 | 50027185 | ID=MS.gene27410.t1.exon1;Parent=MS.gene27410.t1 |
| chr6.4 | CDS | 50027185 | 50027274 | 50027185 | ID=cds.MS.gene27410.t1;Parent=MS.gene27410.t1 |
| chr6.4 | exon | 50027352 | 50027454 | 50027352 | ID=MS.gene27410.t1.exon2;Parent=MS.gene27410.t1 |
| chr6.4 | CDS | 50027352 | 50027454 | 50027352 | ID=cds.MS.gene27410.t1;Parent=MS.gene27410.t1 |
| chr6.4 | exon | 50028716 | 50028795 | 50028716 | ID=MS.gene27410.t1.exon3;Parent=MS.gene27410.t1 |
| chr6.4 | CDS | 50028716 | 50028795 | 50028716 | ID=cds.MS.gene27410.t1;Parent=MS.gene27410.t1 |
| chr6.4 | exon | 50029820 | 50030149 | 50029820 | ID=MS.gene27410.t1.exon4;Parent=MS.gene27410.t1 |
| chr6.4 | CDS | 50029820 | 50030149 | 50029820 | ID=cds.MS.gene27410.t1;Parent=MS.gene27410.t1 |
| chr6.4 | exon | 50030402 | 50030478 | 50030402 | ID=MS.gene27410.t1.exon5;Parent=MS.gene27410.t1 |
| chr6.4 | CDS | 50030402 | 50030478 | 50030402 | ID=cds.MS.gene27410.t1;Parent=MS.gene27410.t1 |
| chr6.4 | exon | 50031185 | 50031227 | 50031185 | ID=MS.gene27410.t1.exon6;Parent=MS.gene27410.t1 |
| chr6.4 | CDS | 50031185 | 50031227 | 50031185 | ID=cds.MS.gene27410.t1;Parent=MS.gene27410.t1 |
| chr6.4 | exon | 50031303 | 50031389 | 50031303 | ID=MS.gene27410.t1.exon7;Parent=MS.gene27410.t1 |
| chr6.4 | CDS | 50031303 | 50031389 | 50031303 | ID=cds.MS.gene27410.t1;Parent=MS.gene27410.t1 |
| Gene Sequence |
| Protein sequence |
