AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27468

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27468.t1 MTR_1g108510 94.505 91 5 0 1 91 1 91 1.15e-58 181
MS.gene27468.t1 MTR_3g030770 94.505 91 5 0 1 91 1 91 1.28e-58 181
MS.gene27468.t1 MTR_2g093190 75.214 117 28 1 1 116 1 117 1.97e-56 175
MS.gene27468.t1 MTR_0121s0100 71.795 117 25 1 1 109 1 117 8.14e-54 165
MS.gene27468.t1 MTR_3g052870 85.714 91 13 0 1 91 1 91 3.84e-53 166
MS.gene27468.t1 MTR_1g105920 85.714 91 13 0 1 91 1 91 1.50e-52 166
MS.gene27468.t1 MTR_1g108580 59.310 145 40 2 1 126 1 145 3.91e-52 164
MS.gene27468.t1 MTR_8g043650 70.085 117 27 1 1 109 1 117 9.25e-52 164
MS.gene27468.t1 MTR_1g105910 84.615 91 14 0 1 91 1 91 2.69e-51 162
MS.gene27468.t1 MTR_2g030740 82.418 91 16 0 1 91 1 91 6.34e-51 161
MS.gene27468.t1 MTR_3g052920 81.319 91 17 0 1 91 1 91 7.67e-50 159
MS.gene27468.t1 MTR_1g106070 80.220 91 18 0 1 91 1 91 2.97e-49 155
MS.gene27468.t1 MTR_1g075600 70.940 117 26 2 1 109 1 117 7.04e-49 156
MS.gene27468.t1 MTR_1g077360 80.220 91 18 0 1 91 1 91 2.00e-48 155
MS.gene27468.t1 MTR_3g030780 79.121 91 19 0 1 91 1 91 2.32e-48 151
MS.gene27468.t1 MTR_1g012570 79.121 91 19 0 1 91 1 91 1.09e-47 153
MS.gene27468.t1 MTR_2g085280 76.923 91 21 0 1 91 1 91 3.60e-47 152
MS.gene27468.t1 MTR_2g085250 76.923 91 21 0 1 91 1 91 3.80e-47 152
MS.gene27468.t1 MTR_5g045560 78.022 91 20 0 1 91 1 91 4.73e-46 149
MS.gene27468.t1 MTR_0121s0080 79.121 91 19 0 1 91 1 91 9.12e-46 148
MS.gene27468.t1 MTR_5g055100 75.824 91 22 0 1 91 1 91 8.68e-45 146
MS.gene27468.t1 MTR_5g053390 74.725 91 23 0 1 91 1 91 5.61e-44 144
MS.gene27468.t1 MTR_1g105905 81.081 74 14 0 18 91 1 74 2.22e-39 131
MS.gene27468.t1 MTR_3g080940 60.440 91 36 0 1 91 1 91 2.06e-35 121
MS.gene27468.t1 MTR_7g062350 59.223 103 40 2 16 116 27 129 3.52e-32 114
MS.gene27468.t1 MTR_8g086290 55.172 87 32 1 4 90 7 86 8.69e-30 105
MS.gene27468.t1 MTR_3g067910 54.167 96 36 1 23 110 4 99 3.97e-29 102
MS.gene27468.t1 MTR_3g067875 75.000 56 14 0 18 73 1 56 3.48e-26 93.6
MS.gene27468.t1 MTR_2g105290 54.545 77 35 0 1 77 4 80 3.75e-26 96.7
MS.gene27468.t1 MTR_1g063160 54.545 77 35 0 9 85 2 78 1.70e-25 95.1
MS.gene27468.t1 MTR_8g079502 57.971 69 29 0 9 77 2 70 3.07e-24 92.0
MS.gene27468.t1 MTR_1g047550 57.971 69 29 0 9 77 2 70 3.29e-24 91.7
MS.gene27468.t1 MTR_1g108500 59.524 84 26 2 23 100 111 192 4.48e-24 94.7
MS.gene27468.t1 MTR_1g054265 53.247 77 36 0 9 85 2 78 5.15e-24 90.9
MS.gene27468.t1 MTR_7g028448 59.740 77 31 0 2 78 5 81 1.32e-23 90.1
MS.gene27468.t1 MTR_4g036915 59.740 77 31 0 2 78 5 81 1.32e-23 90.1
MS.gene27468.t1 MTR_4g131030 53.425 73 34 0 9 81 2 74 1.06e-22 89.0
MS.gene27468.t1 MTR_8g051580 54.286 70 32 0 9 78 2 71 2.05e-21 84.7
MS.gene27468.t1 MTR_1g075570 51.000 100 27 3 18 109 1 86 4.47e-21 83.6
MS.gene27468.t1 MTR_4g094638 44.565 92 51 0 9 100 2 93 3.25e-20 81.6
MS.gene27468.t1 MTR_3g067870 60.317 63 25 0 16 78 83 145 4.86e-20 80.5
MS.gene27468.t1 MTR_8g046350 52.174 69 33 0 9 77 2 70 6.02e-20 80.5
MS.gene27468.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 1.11e-19 81.3
MS.gene27468.t1 MTR_1g053070 48.148 81 42 0 9 89 2 82 2.88e-19 80.5
MS.gene27468.t1 MTR_4g127140 53.247 77 36 0 1 77 4 80 3.57e-19 79.0
MS.gene27468.t1 MTR_0003s0590 38.614 101 60 1 9 109 2 100 5.70e-19 79.7
MS.gene27468.t1 MTR_8g033270 47.619 84 40 2 7 88 2 83 1.12e-18 79.0
MS.gene27468.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.36e-18 78.2
MS.gene27468.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 1.48e-18 78.6
MS.gene27468.t1 MTR_3g452380 49.333 75 36 1 2 76 12 84 2.34e-18 78.2
MS.gene27468.t1 MTR_4g094632 52.174 69 33 0 9 77 2 70 3.08e-18 75.9
MS.gene27468.t1 MTR_4g102530 46.575 73 39 0 10 82 3 75 3.94e-18 76.6
MS.gene27468.t1 MTR_5g032520 47.059 68 36 0 9 76 2 69 5.67e-18 76.6
MS.gene27468.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 7.56e-18 75.5
MS.gene27468.t1 MTR_5g032150 47.059 68 36 0 9 76 2 69 7.57e-18 76.3
MS.gene27468.t1 MTR_4g109830 47.887 71 34 2 7 76 2 70 1.14e-17 75.9
MS.gene27468.t1 MTR_2g017865 49.315 73 35 1 4 76 14 84 2.84e-17 75.5
MS.gene27468.t1 MTR_7g075870 49.254 67 34 0 10 76 3 69 3.06e-17 74.7
MS.gene27468.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 3.36e-17 75.1
MS.gene27468.t1 MTR_8g033220 46.154 78 42 0 10 87 3 80 4.28e-17 74.3
MS.gene27468.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 5.79e-17 73.9
MS.gene27468.t1 MTR_6g464720 49.296 71 33 2 7 76 2 70 6.34e-17 74.3
MS.gene27468.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 6.48e-17 74.7
MS.gene27468.t1 MTR_3g102570 48.611 72 36 1 9 79 2 73 6.96e-17 75.1
MS.gene27468.t1 MTR_8g066260 46.479 71 35 2 7 76 2 70 2.05e-16 72.8
MS.gene27468.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 2.12e-16 72.4
MS.gene27468.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 2.32e-16 68.6
MS.gene27468.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 2.44e-16 72.8
MS.gene27468.t1 MTR_6g015975 49.296 71 33 2 7 76 2 70 2.63e-16 72.8
MS.gene27468.t1 MTR_7g016600 49.296 71 33 2 7 76 2 70 3.73e-16 72.4
MS.gene27468.t1 MTR_7g075870 48.529 68 34 1 10 76 3 70 5.56e-16 71.2
MS.gene27468.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 6.87e-16 68.6
MS.gene27468.t1 MTR_5g046790 42.029 69 39 1 9 76 2 70 9.68e-16 70.5
MS.gene27468.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 1.35e-15 70.5
MS.gene27468.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 1.55e-15 69.3
MS.gene27468.t1 MTR_7g016630 43.662 71 37 2 7 76 2 70 1.80e-15 70.5
MS.gene27468.t1 MTR_8g097090 36.458 96 58 2 9 101 2 97 2.34e-15 70.1
MS.gene27468.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 3.02e-15 69.7
MS.gene27468.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 3.07e-15 69.7
MS.gene27468.t1 MTR_3g084980 37.500 96 57 2 9 101 2 97 3.35e-15 69.7
MS.gene27468.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 4.98e-15 68.2
MS.gene27468.t1 MTR_4g084740 47.222 72 37 1 9 79 2 73 6.01e-15 69.7
MS.gene27468.t1 MTR_8g022970 44.000 75 42 0 8 82 17 91 1.57e-14 67.0
MS.gene27468.t1 MTR_4g109810 50.000 56 28 0 9 64 2 57 2.69e-14 67.4
MS.gene27468.t1 MTR_3g113030 44.286 70 37 1 9 76 2 71 3.61e-14 66.6
MS.gene27468.t1 MTR_5g066960 45.614 57 31 0 9 65 2 58 3.90e-14 62.8
MS.gene27468.t1 MTR_7g075850 47.222 72 34 2 7 76 2 71 4.73e-14 66.6
MS.gene27468.t1 MTR_3g067915 75.000 32 8 0 60 91 30 61 4.57e-13 60.8
MS.gene27468.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 7.49e-13 62.4
MS.gene27468.t1 MTR_1g041615 58.696 46 19 0 20 65 17 62 7.87e-13 61.2
MS.gene27468.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 8.48e-13 62.4
MS.gene27468.t1 MTR_4g093030 36.170 94 44 2 9 86 2 95 9.68e-13 61.6
MS.gene27468.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.01e-12 62.0
MS.gene27468.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.18e-12 62.4
MS.gene27468.t1 MTR_4g108720 38.961 77 45 1 9 83 2 78 5.08e-12 61.6
MS.gene27468.t1 MTR_4g051538 39.506 81 49 0 1 81 1 81 2.71e-11 58.9
MS.gene27468.t1 MTR_3g437790 36.275 102 53 3 26 115 30 131 2.83e-11 58.2
MS.gene27468.t1 MTR_3g109930 46.429 56 30 0 27 82 20 75 2.90e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27468.t1 AT5G60440 69.318 88 25 1 5 90 3 90 1.95e-38 131
MS.gene27468.t1 AT4G36590 48.387 124 57 2 8 124 6 129 3.28e-32 114
MS.gene27468.t1 AT1G01530 64.198 81 29 0 5 85 3 83 3.57e-32 114
MS.gene27468.t1 AT1G65360 60.494 81 32 0 5 85 3 83 2.16e-31 111
MS.gene27468.t1 AT2G24840 64.286 70 25 0 9 78 63 132 8.98e-29 105
MS.gene27468.t1 AT2G34440 43.636 110 62 0 9 118 2 111 2.21e-25 94.7
MS.gene27468.t1 AT3G66656 58.824 68 28 0 9 76 2 69 3.34e-23 89.4
MS.gene27468.t1 AT2G45660 51.471 68 33 0 10 77 3 70 2.98e-20 81.3
MS.gene27468.t1 AT4G09960 45.238 84 45 1 9 91 2 85 7.46e-20 81.6
MS.gene27468.t1 AT4G09960 45.238 84 45 1 9 91 2 85 8.38e-20 81.6
MS.gene27468.t1 AT4G09960 45.238 84 45 1 9 91 3 86 8.71e-20 81.6
MS.gene27468.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.19e-19 80.1
MS.gene27468.t1 AT4G09960 45.238 84 45 1 9 91 12 95 1.20e-19 81.3
MS.gene27468.t1 AT4G09960 45.238 84 45 1 9 91 28 111 1.34e-19 81.6
MS.gene27468.t1 AT2G45660 51.471 68 33 0 10 77 3 70 1.59e-19 80.5
MS.gene27468.t1 AT1G72350 52.055 73 33 1 9 81 43 113 1.83e-19 80.5
MS.gene27468.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.25e-19 80.1
MS.gene27468.t1 AT4G09960 45.238 84 45 1 9 91 97 180 2.98e-19 81.6
MS.gene27468.t1 AT5G51870 53.731 67 31 0 10 76 26 92 3.02e-19 79.3
MS.gene27468.t1 AT2G45650 51.471 68 33 0 9 76 2 69 3.55e-19 80.5
MS.gene27468.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.99e-19 79.7
MS.gene27468.t1 AT5G51870 53.731 67 31 0 10 76 13 79 4.90e-19 79.7
MS.gene27468.t1 AT3G57390 51.429 70 32 1 7 76 2 69 9.20e-19 79.0
MS.gene27468.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.50e-18 78.6
MS.gene27468.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.50e-18 78.6
MS.gene27468.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.80e-18 79.0
MS.gene27468.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.90e-18 79.0
MS.gene27468.t1 AT3G57390 51.429 70 32 1 7 76 2 69 1.94e-18 78.6
MS.gene27468.t1 AT2G42830 49.333 75 36 1 2 76 12 84 2.47e-18 78.2
MS.gene27468.t1 AT2G42830 49.333 75 36 1 2 76 12 84 2.65e-18 78.2
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 4.12e-18 75.5
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 4.12e-18 75.5
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 4.12e-18 75.5
MS.gene27468.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.36e-18 75.1
MS.gene27468.t1 AT4G24540 50.000 68 34 0 9 76 2 69 4.96e-18 76.6
MS.gene27468.t1 AT3G04100 45.000 80 39 1 1 75 1 80 5.13e-18 76.6
MS.gene27468.t1 AT4G18960 43.820 89 47 2 4 91 15 101 5.26e-18 77.4
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 5.42e-18 75.1
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 5.42e-18 75.1
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 5.42e-18 75.1
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 5.42e-18 75.1
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 5.42e-18 75.1
MS.gene27468.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.43e-18 73.9
MS.gene27468.t1 AT4G22950 50.746 67 33 0 10 76 3 69 6.36e-18 75.5
MS.gene27468.t1 AT3G58780 49.333 75 36 1 2 76 12 84 6.45e-18 77.0
MS.gene27468.t1 AT3G58780 49.333 75 36 1 2 76 12 84 6.98e-18 77.4
MS.gene27468.t1 AT3G58780 49.333 75 36 1 2 76 18 90 7.18e-18 77.0
MS.gene27468.t1 AT1G29962 45.946 74 40 0 5 78 4 77 1.26e-17 75.1
MS.gene27468.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.53e-17 74.3
MS.gene27468.t1 AT4G37940 47.059 68 36 0 9 76 2 69 2.12e-17 74.3
MS.gene27468.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.14e-17 74.3
MS.gene27468.t1 AT4G37940 47.059 68 36 0 9 76 2 69 2.80e-17 75.1
MS.gene27468.t1 AT4G22950 50.746 67 33 0 10 76 3 69 2.83e-17 74.7
MS.gene27468.t1 AT4G22950 50.746 67 33 0 10 76 3 69 2.83e-17 74.7
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 2.88e-17 74.3
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 2.88e-17 74.3
MS.gene27468.t1 AT4G37940 47.059 68 36 0 9 76 2 69 2.92e-17 74.7
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 3.23e-17 74.3
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 3.23e-17 74.3
MS.gene27468.t1 AT5G62165 36.082 97 62 0 10 106 3 99 3.23e-17 74.3
MS.gene27468.t1 AT5G51860 50.746 67 33 0 10 76 3 69 3.35e-17 74.3
MS.gene27468.t1 AT5G10140 50.725 69 33 1 9 76 2 70 3.36e-17 73.9
MS.gene27468.t1 AT1G28460 45.946 74 40 0 5 78 4 77 3.99e-17 73.6
MS.gene27468.t1 AT5G51860 50.746 67 33 0 10 76 3 69 4.10e-17 74.3
MS.gene27468.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.35e-17 73.9
MS.gene27468.t1 AT5G20240 46.575 73 37 1 9 79 2 74 4.38e-17 72.8
MS.gene27468.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.64e-17 74.7
MS.gene27468.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.64e-17 74.7
MS.gene27468.t1 AT5G20240 46.575 73 37 1 9 79 2 74 7.64e-17 73.6
MS.gene27468.t1 AT1G69120 47.887 71 34 2 7 76 2 70 8.11e-17 73.9
MS.gene27468.t1 AT1G26310 47.887 71 34 2 7 76 2 70 9.88e-17 73.9
MS.gene27468.t1 AT3G30260 44.928 69 37 1 9 76 2 70 1.43e-16 73.6
MS.gene27468.t1 AT5G60910 47.887 71 34 2 7 76 2 70 2.30e-16 72.8
MS.gene27468.t1 AT1G69120 47.887 71 34 2 7 76 2 70 2.65e-16 72.8
MS.gene27468.t1 AT2G22540 48.529 68 30 1 9 76 2 64 3.33e-16 72.4
MS.gene27468.t1 AT4G11880 48.529 68 34 1 10 76 3 70 4.07e-16 70.9
MS.gene27468.t1 AT4G11880 48.529 68 34 1 10 76 3 70 4.07e-16 70.9
MS.gene27468.t1 AT5G23260 44.086 93 46 2 4 90 13 105 5.50e-16 72.0
MS.gene27468.t1 AT5G23260 44.086 93 46 2 4 90 13 105 5.64e-16 72.0
MS.gene27468.t1 AT3G61120 47.059 68 36 0 9 76 2 69 6.35e-16 71.6
MS.gene27468.t1 AT2G14210 41.558 77 44 1 9 84 2 78 7.89e-16 71.2
MS.gene27468.t1 AT5G15800 49.296 71 33 2 7 76 2 70 8.02e-16 71.6
MS.gene27468.t1 AT3G58780 52.308 65 29 1 2 66 12 74 8.16e-16 71.2
MS.gene27468.t1 AT3G58780 52.308 65 29 1 2 66 12 74 9.02e-16 71.6
MS.gene27468.t1 AT4G11880 48.529 68 34 1 10 76 3 70 1.01e-15 70.9
MS.gene27468.t1 AT4G11880 48.529 68 34 1 10 76 3 70 1.01e-15 70.9
MS.gene27468.t1 AT2G14210 41.558 77 44 1 9 84 2 78 1.06e-15 70.9
MS.gene27468.t1 AT5G65050 36.364 132 63 5 9 122 2 130 1.13e-15 70.1
MS.gene27468.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.31e-15 71.2
MS.gene27468.t1 AT1G77950 43.210 81 45 1 9 88 2 82 1.35e-15 70.9
MS.gene27468.t1 AT1G77950 43.210 81 45 1 9 88 2 82 1.35e-15 70.9
MS.gene27468.t1 AT1G77950 43.210 81 45 1 9 88 2 82 1.35e-15 70.9
MS.gene27468.t1 AT1G77950 43.210 81 45 1 9 88 2 82 1.35e-15 70.9
MS.gene27468.t1 AT1G77980 50.000 72 35 1 9 79 2 73 1.70e-15 71.6
MS.gene27468.t1 AT5G23260 45.455 88 42 2 9 90 2 89 1.86e-15 70.5
MS.gene27468.t1 AT5G23260 45.455 88 42 2 9 90 2 89 2.00e-15 70.5
MS.gene27468.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.35e-15 68.9
MS.gene27468.t1 AT3G54340 43.836 73 39 1 9 79 2 74 3.13e-15 69.7
MS.gene27468.t1 AT3G02310 46.377 69 36 1 9 76 2 70 3.15e-15 68.9
MS.gene27468.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.38e-15 68.6
MS.gene27468.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.78e-15 68.6
MS.gene27468.t1 AT1G17310 54.054 74 32 1 8 81 47 118 3.95e-15 68.9
MS.gene27468.t1 AT1G22130 48.611 72 36 1 9 79 2 73 4.24e-15 70.5
MS.gene27468.t1 AT5G65050 46.377 69 36 1 9 76 2 70 4.44e-15 68.6
MS.gene27468.t1 AT1G17310 51.899 79 36 1 8 86 58 134 4.68e-15 68.9
MS.gene27468.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.15e-15 68.2
MS.gene27468.t1 AT5G65060 46.377 69 36 1 9 76 2 70 7.21e-15 67.8
MS.gene27468.t1 AT5G65060 46.377 69 36 1 9 76 2 70 9.28e-15 67.8
MS.gene27468.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.11e-14 67.8
MS.gene27468.t1 AT1G24260 51.786 56 27 0 9 64 2 57 1.68e-14 67.8
MS.gene27468.t1 AT1G24260 51.786 56 27 0 9 64 2 57 1.72e-14 67.8
MS.gene27468.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.73e-14 67.8
MS.gene27468.t1 AT1G24260 51.786 56 27 0 9 64 2 57 1.77e-14 67.8
MS.gene27468.t1 AT1G28450 40.541 74 44 0 5 78 4 77 1.88e-14 66.6
MS.gene27468.t1 AT2G03710 47.143 70 35 2 9 76 2 71 2.42e-14 67.4
MS.gene27468.t1 AT2G22630 42.647 68 39 0 9 76 2 69 2.43e-14 67.0
MS.gene27468.t1 AT2G22630 42.647 68 39 0 9 76 2 69 2.43e-14 67.0
MS.gene27468.t1 AT2G03710 47.143 70 35 2 9 76 2 71 2.57e-14 67.4
MS.gene27468.t1 AT1G47760 40.299 67 40 0 9 75 2 68 3.95e-14 65.9
MS.gene27468.t1 AT5G65070 39.130 69 41 1 9 76 2 70 8.03e-14 64.3
MS.gene27468.t1 AT1G18750 37.662 77 46 1 9 83 2 78 1.34e-13 66.2
MS.gene27468.t1 AT1G18750 37.662 77 46 1 9 83 2 78 1.36e-13 66.2
MS.gene27468.t1 AT5G65070 39.130 69 41 1 9 76 2 70 2.95e-13 63.9
MS.gene27468.t1 AT5G65070 39.130 69 41 1 9 76 2 70 3.66e-13 63.9
MS.gene27468.t1 AT5G65070 39.130 69 41 1 9 76 2 70 5.02e-13 63.5
MS.gene27468.t1 AT1G18750 37.662 77 46 1 9 83 2 78 5.33e-13 64.7
MS.gene27468.t1 AT5G65070 43.860 57 32 0 9 65 2 58 2.42e-12 62.0
MS.gene27468.t1 AT4G37435 39.437 71 42 1 9 78 2 72 3.22e-12 60.8
MS.gene27468.t1 AT1G69540 40.789 76 44 1 9 83 2 77 5.17e-12 62.0
MS.gene27468.t1 AT1G69540 40.789 76 44 1 9 83 2 77 5.29e-12 61.6
MS.gene27468.t1 AT5G49490 37.500 88 48 2 5 85 41 128 7.93e-12 60.8
MS.gene27468.t1 AT5G65080 36.364 77 48 1 1 76 1 77 9.83e-12 59.7
MS.gene27468.t1 AT5G65080 39.683 63 38 0 1 63 1 63 1.34e-11 59.3
MS.gene27468.t1 AT5G49420 37.778 90 49 2 5 87 3 92 2.02e-11 60.1
MS.gene27468.t1 AT2G03060 37.662 77 46 1 9 83 2 78 3.18e-11 59.7
MS.gene27468.t1 AT2G03060 37.662 77 46 1 9 83 2 78 3.77e-11 59.3
MS.gene27468.t1 AT2G03060 37.662 77 46 1 9 83 2 78 3.77e-11 59.3
MS.gene27468.t1 AT2G03060 37.662 77 46 1 9 83 2 78 3.77e-11 59.3
MS.gene27468.t1 AT1G46408 42.500 80 42 2 7 82 2 81 4.00e-11 58.9
MS.gene27468.t1 AT1G60920 37.037 81 46 1 7 82 2 82 7.84e-11 57.4
MS.gene27468.t1 AT2G26320 36.364 77 47 1 5 79 14 90 8.96e-11 55.5

Find 29 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGGCTTGTCCGGTTGA+TGG 0.330339 7.2:-31534264 MS.gene27468:CDS
GCTTTGAGAAAGTCACTTGC+AGG 0.373101 7.2:+31534558 None:intergenic
CAACAACACGCTCAAGGAAA+TGG 0.388516 7.2:-31534298 MS.gene27468:CDS
GTCTATGACCGTATCAAGAT+TGG 0.398383 7.2:+31534427 None:intergenic
GCCTTTCTTTCTGCTCGACA+TGG 0.428514 7.2:+31534628 None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG 0.435393 7.2:-31534509 MS.gene27468:CDS
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 7.2:-31534263 MS.gene27468:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 7.2:+31534428 None:intergenic
CATAGACCGCTATCTTTCTC+TGG 0.460785 7.2:-31534411 MS.gene27468:CDS
TCCCTATTCATCCCATCAAC+CGG 0.481029 7.2:+31534252 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.492573 7.2:+31534496 None:intergenic
TCCATGTCGAGCAGAAAGAA+AGG 0.543058 7.2:-31534629 MS.gene27468:CDS
TGGTCACCCCAATCTTGATA+CGG 0.553864 7.2:-31534435 MS.gene27468:CDS
GAGCCTCAATATGAGTTGTA+TGG 0.575818 7.2:+31534367 None:intergenic
CTCGTTGTATTCTCACCTAG+TGG 0.580084 7.2:-31534473 MS.gene27468:CDS
ATCAAGATTGGGGTGACCAA+AGG 0.581678 7.2:+31534439 None:intergenic
TCGAGCAGAAAGAAAGGCCG+AGG 0.584906 7.2:-31534623 MS.gene27468:CDS
TCAAATCAACAACACGCTCA+AGG 0.593684 7.2:-31534304 MS.gene27468:CDS
GCACCATACAACTCATATTG+AGG 0.594573 7.2:-31534370 MS.gene27468:CDS
AGCATTGAGTTCACGAACGT+TGG 0.603238 7.2:+31534335 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.611194 7.2:-31534468 MS.gene27468:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 7.2:+31534458 None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG 0.625617 7.2:-31534548 MS.gene27468:CDS
GAGCAGCATCTGCACCACAA+AGG 0.629318 7.2:+31534495 None:intergenic
CAACACGCTCAAGGAAATGG+AGG 0.632817 7.2:-31534295 MS.gene27468:CDS
GTTCACGAACGTTGGCATTG+CGG 0.638735 7.2:+31534343 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 7.2:+31534429 None:intergenic
GTGGTACCAGAGAAAGATAG+CGG 0.703250 7.2:+31534405 None:intergenic
CTGGTACCACCACAAAACAA+CGG 0.718153 7.2:-31534392 MS.gene27468:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTTTTCATCTCGATCTTT+TGG + chr7.2:31534291-31534310 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG + chr7.2:31534430-31534449 None:intergenic 35.0%
TCTATGACCGTATCAAGATT+GGG + chr7.2:31534460-31534479 None:intergenic 35.0%
! AGGAAATGGAGGCTAATTTT+TGG - chr7.2:31534601-31534620 MS.gene27468:CDS 35.0%
!! AAATGGAGGCTAATTTTTGG+TGG - chr7.2:31534604-31534623 MS.gene27468:CDS 35.0%
!!! AATGGAGGCTAATTTTTGGT+GGG - chr7.2:31534605-31534624 MS.gene27468:CDS 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG - chr7.2:31534430-31534449 MS.gene27468:CDS 35.0%
CTATGACCGTATCAAGATTG+GGG + chr7.2:31534459-31534478 None:intergenic 40.0%
GAGCCTCAATATGAGTTGTA+TGG + chr7.2:31534521-31534540 None:intergenic 40.0%
GCACCATACAACTCATATTG+AGG - chr7.2:31534515-31534534 MS.gene27468:CDS 40.0%
GTCTATGACCGTATCAAGAT+TGG + chr7.2:31534461-31534480 None:intergenic 40.0%
TCAAATCAACAACACGCTCA+AGG - chr7.2:31534581-31534600 MS.gene27468:CDS 40.0%
TGTATTCTCACCTAGTGGAA+AGG - chr7.2:31534417-31534436 MS.gene27468:CDS 40.0%
!!! TAATTTTTGGTGGGCTTGTC+CGG - chr7.2:31534614-31534633 MS.gene27468:CDS 40.0%
ATCAAGATTGGGGTGACCAA+AGG + chr7.2:31534449-31534468 None:intergenic 45.0%
CAACAACACGCTCAAGGAAA+TGG - chr7.2:31534587-31534606 MS.gene27468:CDS 45.0%
CATAGACCGCTATCTTTCTC+TGG - chr7.2:31534474-31534493 MS.gene27468:CDS 45.0%
CTCGTTGTATTCTCACCTAG+TGG - chr7.2:31534412-31534431 MS.gene27468:CDS 45.0%
CTGGTACCACCACAAAACAA+CGG - chr7.2:31534493-31534512 MS.gene27468:CDS 45.0%
GTGGTACCAGAGAAAGATAG+CGG + chr7.2:31534483-31534502 None:intergenic 45.0%
TGGTCACCCCAATCTTGATA+CGG - chr7.2:31534450-31534469 MS.gene27468:CDS 45.0%
! AGCATTGAGTTCACGAACGT+TGG + chr7.2:31534553-31534572 None:intergenic 45.0%
!! ACTTTCTCAAAGCGTCGTAG+CGG - chr7.2:31534337-31534356 MS.gene27468:CDS 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG + chr7.2:31534330-31534349 None:intergenic 45.0%
!!! TGTATGGTGCCGTTGTTTTG+TGG + chr7.2:31534505-31534524 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG + chr7.2:31534392-31534411 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr7.2:31534376-31534395 MS.gene27468:CDS 50.0%
CAACACGCTCAAGGAAATGG+AGG - chr7.2:31534590-31534609 MS.gene27468:CDS 50.0%
GTTCACGAACGTTGGCATTG+CGG + chr7.2:31534545-31534564 None:intergenic 50.0%
! TCTCGATCTTTTGGCGACCT+CGG + chr7.2:31534282-31534301 None:intergenic 50.0%
!!! ATGGTGCCGTTGTTTTGTGG+TGG + chr7.2:31534502-31534521 None:intergenic 50.0%
GAGCAGCATCTGCACCACAA+AGG + chr7.2:31534393-31534412 None:intergenic 55.0%
TCGAGCAGAAAGAAAGGCCG+AGG - chr7.2:31534262-31534281 MS.gene27468:CDS 55.0%
! GGTGGGCTTGTCCGGTTGAT+GGG - chr7.2:31534622-31534641 MS.gene27468:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG - chr7.2:31534621-31534640 MS.gene27468:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 31534259 31534648 31534259 ID=MS.gene27468
chr7.2 mRNA 31534259 31534648 31534259 ID=MS.gene27468.t1;Parent=MS.gene27468
chr7.2 exon 31534259 31534648 31534259 ID=MS.gene27468.t1.exon1;Parent=MS.gene27468.t1
chr7.2 CDS 31534259 31534648 31534259 ID=cds.MS.gene27468.t1;Parent=MS.gene27468.t1
Gene Sequence

>MS.gene27468

ATGTCGAGCAGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGACAACAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAATCAAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCACCACAAAACAACGGCACCATACAACTCATATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGCTTACTCAAATCAACAACACGCTCAAGGAAATGGAGGCTAATTTTTGGTGGGCTTGTCCGGTTGATGGGATGA
Protein sequence

>MS.gene27468.t1

MSSRKKGRGRQKIEMKKMSNDNNLQVTFSKRRSGLFKKSSELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTIQLILRLTAMPTFVNSMLSLLKSTTRSRKWRLIFGGLVRLMG