AlfalfaGEDB | MS.gene27479

M. sativa cultivar XinJiangDaYe / MS.gene27479

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27479.t1	XP_003623620.1	98.5	546	8	0	1	546	1	546	5.30E-302	1046.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27479.t1	Q9SF86	37.1	302	182	4	154	448	68	368	8.6e-51	203.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27479.t1	G7KY50	98.5	546	8	0	1	546	1	546	3.8e-302	1046.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27479.t1	MTR_7g073230	99.084	546	5	0	1	546	1	546	0.0	1111
MS.gene27479.t1	MTR_4g018790	81.603	549	91	5	1	546	1	542	0.0	848
MS.gene27479.t1	MTR_4g028140	53.457	593	194	12	1	531	1	573	0.0	552
MS.gene27479.t1	MTR_5g026370	40.575	313	173	6	147	452	69	375	1.65e-65	219
MS.gene27479.t1	MTR_7g101800	39.145	304	173	6	154	448	70	370	1.50e-64	217
MS.gene27479.t1	MTR_7g101800	39.145	304	173	6	154	448	78	378	1.78e-64	217
MS.gene27479.t1	MTR_7g101800	39.145	304	173	6	154	448	90	390	2.08e-64	217
MS.gene27479.t1	MTR_1g063910	36.915	363	209	9	102	448	15	373	5.88e-64	215
MS.gene27479.t1	MTR_1g063910	36.915	363	209	9	102	448	24	382	8.03e-64	215
MS.gene27479.t1	MTR_7g009320	38.339	313	180	4	149	452	102	410	8.64e-62	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27479.t1	AT3G08760	62.478	565	183	14	1	546	3	557	0.0	621
MS.gene27479.t1	AT3G08760	62.478	565	183	14	1	546	3	557	0.0	621
MS.gene27479.t1	AT3G08760	62.478	565	183	14	1	546	3	557	0.0	621
MS.gene27479.t1	AT2G28940	38.462	312	182	6	149	450	81	392	2.78e-63	214
MS.gene27479.t1	AT5G15080	38.436	307	176	5	155	452	127	429	4.38e-62	212
MS.gene27479.t1	AT3G09830	37.086	302	182	5	154	448	68	368	1.13e-61	209
MS.gene27479.t1	AT3G09830	37.086	302	182	5	154	448	68	368	1.13e-61	209
MS.gene27479.t1	AT3G09830	37.086	302	182	5	154	448	68	368	1.13e-61	209
MS.gene27479.t1	AT3G28690	37.134	307	180	5	155	452	11	313	3.51e-60	204
MS.gene27479.t1	AT2G28940	42.972	249	135	4	209	450	25	273	5.11e-60	202

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Find 154 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATGTGTGGAGCTT+TGG	0.347292	7.2:-31378231	MS.gene27479:CDS
AAACTTATCAATGGAGACAC+TGG	0.586204	7.2:-31378274	MS.gene27479:CDS
AAAGCTCCACACATTGCTTT+TGG	0.254890	7.2:+31378233	None:intergenic
AAAGGCGGTCCAAGCTTCCA+TGG	0.577454	7.2:+31378932	None:intergenic
AAAGGTCCAGAAGCATGTAG+AGG	0.670700	7.2:+31379798	None:intergenic
AAAGTAAGCTTTATATATGG+TGG	0.574854	7.2:+31379671	None:intergenic
AACATTTCCTTTCCAGATAA+TGG	0.218222	7.2:+31377904	None:intergenic
AAGAACAAGCTCGAGGCGGA+AGG	0.550065	7.2:+31377764	None:intergenic
AAGAGAGGAATTTAGTCAAA+TGG	0.409543	7.2:-31378149	MS.gene27479:CDS
AAGGCATCTTTGTGCAATGT+CGG	0.559576	7.2:+31378032	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTTCCTTTCCAGATAA+TGG	+	chr7.2:31379989-31380008	None:intergenic	30.0%
AAGAGAGGAATTTAGTCAAA+TGG	-	chr7.2:31379741-31379760	MS.gene27479:CDS	30.0%
ATAAACGATAATCATCAGCT+AGG	+	chr7.2:31379778-31379797	None:intergenic	30.0%
ATCTTTGTCAATCTGTATGT+TGG	+	chr7.2:31379345-31379364	None:intergenic	30.0%
ATGTTTGAGAGCAAGAATTA+TGG	+	chr7.2:31379558-31379577	None:intergenic	30.0%
CAAACACAACATTAAGCTTA+AGG	+	chr7.2:31378499-31378518	None:intergenic	30.0%
CTTAAGCTTAATGTTGTGTT+TGG	-	chr7.2:31378497-31378516	MS.gene27479:CDS	30.0%
CTTGTATTCCAATCAATTGA+TGG	+	chr7.2:31379004-31379023	None:intergenic	30.0%
TTACTTTCTTGCATGAAGAA+GGG	-	chr7.2:31379056-31379075	MS.gene27479:CDS	30.0%
TTCATAACAGTCAATTTGCA+AGG	+	chr7.2:31378671-31378690	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	31377675	31380237	31377675	ID=MS.gene27479
chr7.2	mRNA	31377675	31380237	31377675	ID=MS.gene27479.t1;Parent=MS.gene27479
chr7.2	exon	31379605	31380237	31379605	ID=MS.gene27479.t1.exon1;Parent=MS.gene27479.t1
chr7.2	CDS	31379605	31380237	31379605	ID=cds.MS.gene27479.t1;Parent=MS.gene27479.t1
chr7.2	exon	31378825	31379082	31378825	ID=MS.gene27479.t1.exon2;Parent=MS.gene27479.t1
chr7.2	CDS	31378825	31379082	31378825	ID=cds.MS.gene27479.t1;Parent=MS.gene27479.t1
chr7.2	exon	31378476	31378595	31378476	ID=MS.gene27479.t1.exon3;Parent=MS.gene27479.t1
chr7.2	CDS	31378476	31378595	31378476	ID=cds.MS.gene27479.t1;Parent=MS.gene27479.t1
chr7.2	exon	31377675	31378304	31377675	ID=MS.gene27479.t1.exon4;Parent=MS.gene27479.t1
chr7.2	CDS	31377675	31378304	31377675	ID=cds.MS.gene27479.t1;Parent=MS.gene27479.t1

Gene Sequence

>MS.gene27479

ATGGGGTGTTTCACTGTATTGAAGAGCAAGAAGAAGAAGTCTGATTCTTTTGCCTATGTAAAACGCATAAGCCATAACGAGCATGCACCTTCAGTACTTCCTGAACCTCAAACTCACACTCGCTCACTACAGTCTGCACCTCCTAGTTTCAGGACCAGAGTGAAACCTATTCAATCTGTGAATAAAGTAACTAACAATAGAATACGGGCATTATCTGCTCCATCGACTCTTGATGTAGCAGACCAAGATGCTTTGGCCTCAATTGAGTACGAGGAACAAGAAGAGTTAAAACACCGAGGAGGAGGATCAATGAAGGAGCTGCGTTCTTCTAGTCCACAACCTTTACCACTTCCTTCTCCTCAGGGAGGTAGTTCACTGAAAGCTATTGGCAGCTTTAAGTTGGGGACAGCTAGTGGTCCTCTACATGCTTCTGGACCTTTGCCGCTTCCTCCTACCGGTTCACTTCGGAACTTTCCGTATGAGGAAGTTGCTGCTGCTTGCCACAATTTCTCTTCTGATCGATGCATGTCAGAATGTCTTTCGTCCACCATATATAAAGCTTACTTTGGTGACGATCCTTCAAATTCAAAGAAGTTTGAAGCCACTGTCACACGTCTTCACCCATCATCTCAGGTTCTTTTCTCAGTACTGTATTATTTTAATTTCATATCTTGGTATCTTCATGCATGCTAATTGGTAATCTAAATAGTGTGAAATTATCAATATAGAGAGAAATAATGCCTGCATTGTTATCTTAGAATGGCGCTAGACTTCAAATTCATATATGTATTTTGCGGTGCATGAGATGTGTTATGTGTTAACCTTAAGCTTAATGTTGTGTTTGGTTGAATTCACTGATAAATGCAACAGAGGAATAAGATTGCTTTTAGGTTTTTCACTTTGTGCCCTTCAACTTGCTATATATGCGGTGTTTAAGCATTGTTCTATGTTTAAGCATTGTTCACTTTGATTAATATGCTATTGTTGTCAAATCCTTGCAAATTGACTGTTATGAATTGCATGCCTGCTGATTGAAAGGGACACAATCACCAGTTATTCTTAGTGTTGTAAAATTTATCTTTTTTATGACATTGAAAGATTTTAATTGACATGAGAACTTTCTGAAGTGGTCTAAAAGTATCTATCTTTTTACAGGGTTTGAAGGAATTCATAAACGAGGTTAATACTCTCGCAACTTTGCAACATCCAAACCTCTGTAAATTGCTAGGGTTTCACGCACGTGATGGATCAGAACACAAAATGTTGGTCTATGAGAGGCTATACCATGGAAGCTTGGACCGCCTTTTGTATGGTAGATCTGATGGACCATCAATTGATTGGAATACAAGAATGAAAATTGCAATGTGTGCTGCCCATGGTCTTACTTTCTTGCATGAAGAAGGGCCTTTTCAGGTAATTAGTAAGAAATCATAATGGATATATTGAACTGAATAAACTTCGTGTTGTCGTGTCAGCTTTATATGTTCACATGTGCTGTTTAAATCTCACCAAGGGAGTGCTAATGGACCTGATTTATTCTGTTTTTATGTTATGGACTGTATGATTTCAGTGATGTTTTGATTAGTTTTTGGTTTCCACTGACCTATTTAACAATAATATGTGCATTTTGTCTTTGTTGCAGGCAATGTATAATGAGTTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCTAAGCTTTCCGGATATGGTTGTGTTGGTCATATTCCCGAGGAAGAGATTTCCAGCAGCTCATCTGTAAGTACTTTGATTTACAAATGTTTTTTCGGTAACTCAGATATCCATACAATGTCTATTATATATTTAGCTAATGTTCTCTACCTTATCATCTTTATATTTATCATGAATATCTGTTCCATAATTCTTGCTCTCAAACATGATTATATTAAGGAATTTATTTTTGTTCAGGCTGTTGGAAACTTATCAATGGAGACACTGGAGAAAGGAATGCTGACCCCCAAAAGCAATGTGTGGAGCTTTGGAATTTTTCTTTTGGAGTTACTTACAGGAAGAAAGAATCTTGATAGCCGTCACCCTAAGGAAGAGAGGAATTTAGTCAAATGGAGCAAGCCTTTCCTAGCTGATGATTATCGTTTATCGCTGATCATGGACCCTCAACTTAAAGGCCGCTTTCCTTCTAAAGCAGCAAGAACAATAGCCGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGATAGACCCACCATGAGAACTGTCGTTGAGCATCTCAAAACGATACAGGATTTGAAGTACTCTTGTAGGTTTCCACTACAAGAACCAGCACCATTATCTGGAAAGGAAATGTTGAGATCGCCAAGTCTTAATGGTATCATCTGCCCTGCGCCAAGGTTGAGTTACTCTCCATCCCGGCCATCGGTAGCCCCAATACCAATTTCGCCTCCAAGATGGTCCGGGGTGCCCGTCCTTCCGCCTCGAGCTTGTTCTTCTACTCTCTCATTGGTAGAGCTTGATAGGCAAGAAAGCCGTAAGTCATCATCCTCAGCCTCTAGGAGGGCCAGTGTTGAAGGATTTTGA

Protein sequence

>MS.gene27479.t1

MGCFTVLKSKKKKSDSFAYVKRISHNEHAPSVLPEPQTHTRSLQSAPPSFRTRVKPIQSVNKVTNNRIRALSAPSTLDVADQDALASIEYEEQEELKHRGGGSMKELRSSSPQPLPLPSPQGGSSLKAIGSFKLGTASGPLHASGPLPLPPTGSLRNFPYEEVAAACHNFSSDRCMSECLSSTIYKAYFGDDPSNSKKFEATVTRLHPSSQGLKEFINEVNTLATLQHPNLCKLLGFHARDGSEHKMLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIAMCAAHGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSKPFLADDYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSDRPTMRTVVEHLKTIQDLKYSCRFPLQEPAPLSGKEMLRSPSLNGIICPAPRLSYSPSRPSVAPIPISPPRWSGVPVLPPRACSSTLSLVELDRQESRKSSSSASRRASVEGF