AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27480.t1 MTR_7g073240 94.783 345 17 1 1 344 17 361 0.0 685
MS.gene27480.t1 MTR_4g028130 50.000 380 148 6 1 342 213 588 1.21e-113 350
MS.gene27480.t1 MTR_4g028130 44.819 415 153 8 1 342 213 624 1.50e-103 318
MS.gene27480.t1 MTR_4g028130 44.819 415 153 8 1 342 213 624 8.37e-102 320
MS.gene27480.t1 MTR_2g011940 45.246 305 131 5 73 341 320 624 2.61e-79 254
MS.gene27480.t1 MTR_2g011940 45.246 305 131 5 73 341 320 624 6.65e-79 254
MS.gene27480.t1 MTR_2g011940 45.246 305 131 5 73 341 311 615 5.62e-78 256
MS.gene27480.t1 MTR_3g467380 49.767 215 97 7 1 209 233 442 5.68e-56 196
MS.gene27480.t1 MTR_3g467380 50.394 127 50 2 229 342 522 648 8.59e-32 126
MS.gene27480.t1 MTR_5g075410 50.270 185 87 3 36 219 254 434 8.59e-53 186
MS.gene27480.t1 MTR_5g075410 55.556 72 31 1 231 301 507 578 1.70e-17 84.0
MS.gene27480.t1 MTR_7g083700 38.835 103 62 1 105 206 126 228 3.24e-17 81.6
MS.gene27480.t1 MTR_7g059330 39.216 102 60 2 105 204 623 724 1.78e-16 80.9
MS.gene27480.t1 MTR_1g058350 38.298 141 65 7 82 208 50 182 1.80e-16 79.3
MS.gene27480.t1 MTR_8g023990 40.000 110 56 5 105 207 171 277 2.34e-14 74.3
MS.gene27480.t1 MTR_7g105370 41.905 105 54 5 110 210 65 166 5.68e-14 72.0
MS.gene27480.t1 MTR_7g117455 40.659 91 49 3 105 192 117 205 2.20e-13 71.2
MS.gene27480.t1 MTR_5g053920 38.053 113 56 5 104 204 193 303 8.62e-13 68.9
MS.gene27480.t1 MTR_1g093600 34.641 153 69 7 92 215 168 318 1.21e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27480.t1 AT4G32010 44.847 359 153 7 24 342 203 556 1.01e-89 285
MS.gene27480.t1 AT4G32010 44.353 363 153 8 24 342 203 560 8.65e-88 280
MS.gene27480.t1 AT2G30470 44.582 323 125 5 73 342 262 583 5.63e-80 259
MS.gene27480.t1 AT4G21550 39.568 278 147 7 38 299 254 526 1.05e-50 177
MS.gene27480.t1 AT4G21550 40.714 280 145 7 38 301 254 528 3.71e-45 164
MS.gene27480.t1 AT4G21550 38.636 264 141 7 38 285 254 512 1.28e-44 160
MS.gene27480.t1 AT3G26790 40.385 104 61 1 105 207 91 194 3.52e-18 84.3
MS.gene27480.t1 AT3G24650 38.211 123 74 2 105 225 571 693 1.43e-17 84.3
MS.gene27480.t1 AT1G28300 39.669 121 69 3 72 189 136 255 1.60e-17 83.2
MS.gene27480.t1 AT5G06250 39.695 131 60 5 105 218 45 173 1.02e-16 79.3
MS.gene27480.t1 AT5G06250 39.695 131 60 5 105 218 45 173 1.03e-16 79.7
MS.gene27480.t1 AT5G06250 39.695 131 60 5 105 218 45 173 1.07e-16 79.7
MS.gene27480.t1 AT5G06250 39.695 131 60 5 105 218 45 173 1.33e-16 79.0
MS.gene27480.t1 AT5G06250 39.695 131 60 5 105 218 45 173 1.51e-16 79.0
MS.gene27480.t1 AT1G13260 38.983 118 65 5 104 216 186 301 4.31e-16 78.6
MS.gene27480.t1 AT3G25730 37.815 119 65 5 105 216 182 298 1.13e-15 77.4
MS.gene27480.t1 AT2G36080 41.667 108 54 4 105 205 37 142 3.02e-15 74.7
MS.gene27480.t1 AT2G36080 41.667 108 54 4 105 205 37 142 3.09e-15 73.2
MS.gene27480.t1 AT2G36080 41.667 108 54 4 105 205 37 142 3.09e-15 73.2
MS.gene27480.t1 AT2G36080 41.667 108 54 4 105 205 37 142 3.55e-15 74.7
MS.gene27480.t1 AT1G68840 44.086 93 45 4 105 192 187 277 2.71e-14 73.6
MS.gene27480.t1 AT1G68840 44.086 93 45 4 105 192 187 277 2.71e-14 73.6
MS.gene27480.t1 AT3G11580 39.316 117 52 5 105 205 28 141 4.06e-14 71.2
MS.gene27480.t1 AT3G11580 39.316 117 52 5 105 205 28 141 4.06e-14 71.2
MS.gene27480.t1 AT3G11580 39.316 117 52 5 105 205 28 141 4.06e-14 71.2
MS.gene27480.t1 AT3G11580 39.316 117 52 5 105 205 28 141 7.84e-14 71.2
MS.gene27480.t1 AT2G46870 38.889 108 57 5 105 205 34 139 8.89e-14 71.6
MS.gene27480.t1 AT1G01030 33.588 131 72 5 105 222 55 183 7.56e-13 68.9
MS.gene27480.t1 AT3G11580 39.316 117 52 5 105 205 28 141 9.78e-13 68.9
MS.gene27480.t1 AT3G61970 37.037 108 59 4 105 205 22 127 1.36e-12 67.8
MS.gene27480.t1 AT4G01500 35.714 126 65 5 77 192 2 121 1.92e-12 67.8
MS.gene27480.t1 AT1G25560 37.931 116 58 5 105 208 194 307 2.37e-12 67.8
MS.gene27480.t1 AT1G01030 37.288 118 64 5 105 214 55 170 2.44e-12 67.8

Find 75 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTGCAAGTTGGAGATTT+TGG 0.162855 7.2:+31374488 MS.gene27480:CDS
TGGAATCTGTGGAGAATTTA+TGG 0.172380 7.2:+31375960 MS.gene27480:CDS
TATATCCTGCTGCTATTATT+TGG 0.179530 7.2:-31374428 None:intergenic
TGGTGTTTAAATTTAGATTT+TGG 0.182651 7.2:+31374405 MS.gene27480:CDS
CTTACTTCAACACATGATTT+TGG 0.195081 7.2:-31374217 None:intergenic
TGTTTCCTTTGTCGTCTTAC+AGG 0.195568 7.2:-31373785 None:intergenic
AAGAAGGGTATATTCATAAA+TGG 0.214466 7.2:+31375545 MS.gene27480:CDS
ATGACCTTTAATACTCCTTT+TGG 0.228375 7.2:+31373578 MS.gene27480:CDS
GGCTCTCCCTCTGAGAGATT+TGG 0.271633 7.2:-31373656 None:intergenic
AATTCTTGATCGGTAATCTT+AGG 0.277029 7.2:-31373827 None:intergenic
CATTGATGCTGAAACTTACT+TGG 0.278155 7.2:+31375117 MS.gene27480:CDS
ATTTCCAAAAGGAGTATTAA+AGG 0.297494 7.2:-31373582 None:intergenic
CAAGAATTACAACAATTATC+TGG 0.358413 7.2:+31373842 MS.gene27480:CDS
TTCCTTGCGACATGATGAAT+TGG 0.372803 7.2:-31373758 None:intergenic
TTTGGAAATTCAAATTCCTT+TGG 0.374583 7.2:+31373596 MS.gene27480:CDS
ATACCCTTCTTTGCAATGAT+AGG 0.386942 7.2:-31375533 None:intergenic
AATTTGCAGTAACATTTAAC+CGG 0.402045 7.2:+31374656 MS.gene27480:intron
CTCAATAGCAAGAGTTGACT+TGG 0.413822 7.2:-31373708 None:intergenic
TTCAAACATTGTGGTGATTG+AGG 0.415224 7.2:+31375181 MS.gene27480:CDS
GGAATCTGTGGAGAATTTAT+GGG 0.424748 7.2:+31375961 MS.gene27480:CDS
ACAATGTTTGAATTAATTGT+TGG 0.426877 7.2:-31375170 None:intergenic
TGCAAAAGATTCTGAGACTT+AGG 0.426953 7.2:-31373677 None:intergenic
AGACGTGAAAGGGAAGAAAT+TGG 0.434182 7.2:+31374385 MS.gene27480:CDS
GGAAATTCAAATTCCTTTGG+TGG 0.453203 7.2:+31373599 MS.gene27480:CDS
AGAAGGGTATATTCATAAAT+GGG 0.456876 7.2:+31375546 MS.gene27480:CDS
TACAAATCGAAGACGTGAAA+GGG 0.459274 7.2:+31374375 MS.gene27480:CDS
GTTAATGTCTTCTCGAATAG+TGG 0.460753 7.2:-31374157 None:intergenic
AATAACATTGCTATGTCTAA+AGG 0.470824 7.2:+31374984 MS.gene27480:CDS
TTCCCCTTAGGTTCAACTCA+TGG 0.477460 7.2:-31376104 None:intergenic
AAGGAATTTGAATTTCCAAA+AGG 0.480284 7.2:-31373593 None:intergenic
TCCCCTTAGGTTCAACTCAT+GGG 0.485137 7.2:-31376103 None:intergenic
GTGCTCAGAATGGAGAAAGT+TGG 0.489559 7.2:+31375940 MS.gene27480:CDS
GCTAGTGATGTTGGTCGACT+TGG 0.492614 7.2:+31374181 MS.gene27480:CDS
ACCTCCTATCATTGCAAAGA+AGG 0.496773 7.2:+31375529 MS.gene27480:CDS
CCCTTCTTTGCAATGATAGG+AGG 0.497014 7.2:-31375530 None:intergenic
TGCAGTAACATTTAACCGGA+TGG 0.497340 7.2:+31374660 MS.gene27480:intron
AACTGATAATAGGGTTTCGA+AGG 0.500618 7.2:+31374695 MS.gene27480:CDS
TGTTGGTCGACTTGGTCGCA+TGG 0.503887 7.2:+31374189 MS.gene27480:CDS
TTTGAATTAATTGTTGGAGG+TGG 0.504920 7.2:-31375164 None:intergenic
GGCATCGGCTTCTTCTATAC+AGG 0.506593 7.2:+31374717 MS.gene27480:CDS
CCTATTATCAGTTTCTCCCC+CGG 0.509156 7.2:-31374685 None:intergenic
TTTCCACCTATTTCGGAACC+AGG 0.514336 7.2:+31374341 MS.gene27480:CDS
AACATTTAACCGGATGGACC+CGG 0.514859 7.2:+31374666 MS.gene27480:CDS
TTTGGCCAAATAATAGCAGC+AGG 0.517585 7.2:+31374423 MS.gene27480:CDS
ATGGAGAAAGTTGGAATCTG+TGG 0.530973 7.2:+31375949 MS.gene27480:CDS
AACAATTAATTCAAACATTG+TGG 0.531325 7.2:+31375172 MS.gene27480:CDS
AATAGGGTTTCGAAGGGCAT+CGG 0.532282 7.2:+31374702 MS.gene27480:CDS
CAGTCTATGCAATTGCAAGT+TGG 0.537113 7.2:+31374479 MS.gene27480:CDS
TAATTGTTGTAATTCTTGAT+CGG 0.538634 7.2:-31373837 None:intergenic
ACATTAACTGCTAGTGATGT+TGG 0.541192 7.2:+31374172 MS.gene27480:CDS
ATGTTTGAATTAATTGTTGG+AGG 0.542650 7.2:-31375167 None:intergenic
TTCCACCTATTTCGGAACCA+GGG 0.543683 7.2:+31374342 MS.gene27480:CDS
AGAATTTATGGGGTCAAAGA+AGG 0.549360 7.2:+31375972 MS.gene27480:CDS
ACATTTAACCGGATGGACCC+GGG 0.549810 7.2:+31374667 MS.gene27480:CDS
TTACAAATCGAAGACGTGAA+AGG 0.557247 7.2:+31374374 MS.gene27480:CDS
TTCAATTCCAAATCTCTCAG+AGG 0.562873 7.2:+31373649 MS.gene27480:CDS
ACCATAGGATGAACGAGCAA+TGG 0.564796 7.2:+31375903 MS.gene27480:intron
GCTGAAACTTACTTGGGAAG+AGG 0.565759 7.2:+31375124 MS.gene27480:CDS
CCTCCTATCATTGCAAAGAA+GGG 0.572822 7.2:+31375530 MS.gene27480:CDS
ATTGATGCTGAAACTTACTT+GGG 0.573068 7.2:+31375118 MS.gene27480:CDS
TCAATTCCAAATCTCTCAGA+GGG 0.577689 7.2:+31373650 MS.gene27480:CDS
TTAGGAACTACTAGCTCTTG+TGG 0.580404 7.2:-31375032 None:intergenic
AATTCAAATTCCTTTGGTGG+TGG 0.581836 7.2:+31373602 MS.gene27480:CDS
CTCCAATTCATCATGTCGCA+AGG 0.583526 7.2:+31373756 MS.gene27480:CDS
AGTGTGAGAAGTGCTCAGAA+TGG 0.598771 7.2:+31375930 MS.gene27480:CDS
CTCGAATAGTGGCACAATGG+CGG 0.604126 7.2:-31374146 None:intergenic
TCCACCTATTTCGGAACCAG+GGG 0.606854 7.2:+31374343 MS.gene27480:CDS
CATTTAACCGGATGGACCCG+GGG 0.615232 7.2:+31374668 MS.gene27480:CDS
GAATCTGTGGAGAATTTATG+GGG 0.628808 7.2:+31375962 MS.gene27480:CDS
ACTGATAATAGGGTTTCGAA+GGG 0.642961 7.2:+31374696 MS.gene27480:CDS
TCAATAGCAAGAGTTGACTT+GGG 0.655637 7.2:-31373707 None:intergenic
AATCGCCTGTAAGACGACAA+AGG 0.682009 7.2:+31373780 MS.gene27480:CDS
CTTCTCGAATAGTGGCACAA+TGG 0.682280 7.2:-31374149 None:intergenic
CCACCTATTTCGGAACCAGG+GGG 0.686812 7.2:+31374344 MS.gene27480:CDS
ATTTAACCGGATGGACCCGG+GGG 0.732920 7.2:+31374669 MS.gene27480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATAAAAAAATAGTATA+GGG - chr7.2:31375661-31375680 None:intergenic 10.0%
!! ATTCAATATAAAATAAAATG+AGG - chr7.2:31374043-31374062 None:intergenic 10.0%
!! ATTTACATAAATACAAAAAT+AGG - chr7.2:31374947-31374966 None:intergenic 10.0%
!! TAATGATAAAAAAATAGTAT+AGG - chr7.2:31375662-31375681 None:intergenic 10.0%
!!! TTATAATTTTCATTTGTTAT+AGG + chr7.2:31375783-31375802 MS.gene27480:intron 10.0%
!!! TTTTTATGAAATTCTTTATT+TGG + chr7.2:31375262-31375281 MS.gene27480:intron 10.0%
!! AAAGATTTATCATCAAATAT+TGG - chr7.2:31374276-31374295 None:intergenic 15.0%
!! CATAAAATACTTTATATTTC+TGG + chr7.2:31375999-31376018 MS.gene27480:intron 15.0%
!! TCAACATATTTAAAAAAACA+TGG + chr7.2:31375690-31375709 MS.gene27480:intron 15.0%
!!! AATCTTTGAATATGTTTTAT+TGG + chr7.2:31375468-31375487 MS.gene27480:intron 15.0%
!!! ATGTTTTTTTAAATATGTTG+AGG - chr7.2:31375691-31375710 None:intergenic 15.0%
!!! CAAAAATCTTTTTTTTTTGA+AGG + chr7.2:31375377-31375396 MS.gene27480:intron 15.0%
!!! TTTACTAAACTTTTCATTAT+AGG + chr7.2:31373879-31373898 MS.gene27480:intron 15.0%
!! AACAATTAATTCAAACATTG+TGG + chr7.2:31375172-31375191 MS.gene27480:CDS 20.0%
!! ACAATGTTTGAATTAATTGT+TGG - chr7.2:31375173-31375192 None:intergenic 20.0%
!! GTATATGAAAAAAGTAACAT+TGG - chr7.2:31374564-31374583 None:intergenic 20.0%
!! TAATTGTTGTAATTCTTGAT+CGG - chr7.2:31373840-31373859 None:intergenic 20.0%
!! TGAAAAGTTTAGTAAAGTAA+TGG - chr7.2:31373875-31373894 None:intergenic 20.0%
!! TTATACAACAGTAAATTGAA+CGG - chr7.2:31373969-31373988 None:intergenic 20.0%
!! TTCATCAAAATAAACTTTAG+AGG + chr7.2:31375312-31375331 MS.gene27480:intron 20.0%
!!! AATAAATCTTGATTTTTGCA+AGG + chr7.2:31376037-31376056 MS.gene27480:intron 20.0%
!!! ACTGCAAATTTTTTTGTAAA+AGG - chr7.2:31374646-31374665 None:intergenic 20.0%
!!! CAAAAGTTCATAATTTTGTA+AGG - chr7.2:31375630-31375649 None:intergenic 20.0%
!!! TGGTGTTTAAATTTAGATTT+TGG + chr7.2:31374405-31374424 MS.gene27480:CDS 20.0%
!!! TTATGTATATTTCTATCCAT+AGG - chr7.2:31374617-31374636 None:intergenic 20.0%
! AAGGAATTTGAATTTCCAAA+AGG - chr7.2:31373596-31373615 None:intergenic 25.0%
! AATAACATTGCTATGTCTAA+AGG + chr7.2:31374984-31375003 MS.gene27480:CDS 25.0%
! AATTTGCAGTAACATTTAAC+CGG + chr7.2:31374656-31374675 MS.gene27480:intron 25.0%
! ATGTTTGAATTAATTGTTGG+AGG - chr7.2:31375170-31375189 None:intergenic 25.0%
! CAAGAATTACAACAATTATC+TGG + chr7.2:31373842-31373861 MS.gene27480:CDS 25.0%
! TAGTCCTCAAAGATATAATA+TGG - chr7.2:31375291-31375310 None:intergenic 25.0%
! TTATTATTTCACTGTCATGT+AGG + chr7.2:31374585-31374604 MS.gene27480:intron 25.0%
! TTTGGAAATTCAAATTCCTT+TGG + chr7.2:31373596-31373615 MS.gene27480:CDS 25.0%
!! AAAACACCTTTTATAAGATC+AGG - chr7.2:31375749-31375768 None:intergenic 25.0%
!! AAACACCTTTTATAAGATCA+GGG - chr7.2:31375748-31375767 None:intergenic 25.0%
!! AAGAAGGGTATATTCATAAA+TGG + chr7.2:31375545-31375564 MS.gene27480:CDS 25.0%
!! AGAAGGGTATATTCATAAAT+GGG + chr7.2:31375546-31375565 MS.gene27480:CDS 25.0%
!! ATGGTGACATTTCAATTTTA+AGG + chr7.2:31375341-31375360 MS.gene27480:intron 25.0%
!! TAAACTTTAGAGGAATAGTA+TGG + chr7.2:31375322-31375341 MS.gene27480:intron 25.0%
!! TGATTTTTGCAAGGTTTTTA+AGG + chr7.2:31376046-31376065 MS.gene27480:intron 25.0%
!! TTTAAGCTTTAACACATCAT+TGG - chr7.2:31374124-31374143 None:intergenic 25.0%
!!! ATATGTTTTATTGGTGTTGA+TGG + chr7.2:31375477-31375496 MS.gene27480:intron 25.0%
!!! ATTTCCAAAAGGAGTATTAA+AGG - chr7.2:31373585-31373604 None:intergenic 25.0%
!!! CATATGTCTAATTTGTTCTA+TGG + chr7.2:31374901-31374920 MS.gene27480:intron 25.0%
!!! TAATTTGTTAGAACTGAAAG+TGG + chr7.2:31374299-31374318 MS.gene27480:intron 25.0%
AATTCTTGATCGGTAATCTT+AGG - chr7.2:31373830-31373849 None:intergenic 30.0%
ATTGATGCTGAAACTTACTT+GGG + chr7.2:31375118-31375137 MS.gene27480:CDS 30.0%
ATTTGTAAATAAATACCCCC+TGG - chr7.2:31374362-31374381 None:intergenic 30.0%
GACTATACTAAAATTGATGC+AGG + chr7.2:31375505-31375524 MS.gene27480:intron 30.0%
GTGACCATATTATATCTTTG+AGG + chr7.2:31375284-31375303 MS.gene27480:intron 30.0%
GTTTGTATGATTAGTACTCT+TGG + chr7.2:31374075-31374094 MS.gene27480:intron 30.0%
TATATCCTGCTGCTATTATT+TGG - chr7.2:31374431-31374450 None:intergenic 30.0%
TGTGTAAGATTGCAAAAATG+TGG + chr7.2:31374773-31374792 MS.gene27480:intron 30.0%
TTGACTTCTCTATTAGAAGT+TGG - chr7.2:31375834-31375853 None:intergenic 30.0%
TTTGAATTAATTGTTGGAGG+TGG - chr7.2:31375167-31375186 None:intergenic 30.0%
! AATTGCTATTGAACTATGAG+TGG - chr7.2:31374527-31374546 None:intergenic 30.0%
! ATGACCTTTAATACTCCTTT+TGG + chr7.2:31373578-31373597 MS.gene27480:CDS 30.0%
! ATTCTGCTATGTGTTATTAG+AGG + chr7.2:31374828-31374847 MS.gene27480:intron 30.0%
! CTTACTTCAACACATGATTT+TGG - chr7.2:31374220-31374239 None:intergenic 30.0%
! CTTTAACACATCATTGGTTA+TGG - chr7.2:31374118-31374137 None:intergenic 30.0%
! GACATATTTTCCACCTATTT+CGG + chr7.2:31374334-31374353 MS.gene27480:intron 30.0%
! TAGGTCAAATGTTTTATGCT+AGG + chr7.2:31373898-31373917 MS.gene27480:intron 30.0%
! TCACATGTTCTTTTCTTCTT+AGG - chr7.2:31375053-31375072 None:intergenic 30.0%
!! AGCAGGATATATGTTTTAGA+AGG + chr7.2:31374440-31374459 MS.gene27480:CDS 30.0%
AACTGATAATAGGGTTTCGA+AGG + chr7.2:31374695-31374714 MS.gene27480:CDS 35.0%
AATTCAAATTCCTTTGGTGG+TGG + chr7.2:31373602-31373621 MS.gene27480:CDS 35.0%
ACATAGCAATGTTATTCACC+TGG - chr7.2:31374980-31374999 None:intergenic 35.0%
ACATTAACTGCTAGTGATGT+TGG + chr7.2:31374172-31374191 MS.gene27480:CDS 35.0%
ACTGATAATAGGGTTTCGAA+GGG + chr7.2:31374696-31374715 MS.gene27480:CDS 35.0%
AGAATTTATGGGGTCAAAGA+AGG + chr7.2:31375972-31375991 MS.gene27480:CDS 35.0%
ATACCCTTCTTTGCAATGAT+AGG - chr7.2:31375536-31375555 None:intergenic 35.0%
ATGCACCCTGATCTTATAAA+AGG + chr7.2:31375740-31375759 MS.gene27480:intron 35.0%
ATGCTTTGTGATTGAACCAT+AGG + chr7.2:31375888-31375907 MS.gene27480:intron 35.0%
ATGTAAATTTCTTTCCCACC+AGG + chr7.2:31374959-31374978 MS.gene27480:intron 35.0%
CATTGATGCTGAAACTTACT+TGG + chr7.2:31375117-31375136 MS.gene27480:CDS 35.0%
GAATCTGTGGAGAATTTATG+GGG + chr7.2:31375962-31375981 MS.gene27480:CDS 35.0%
GGAAATTCAAATTCCTTTGG+TGG + chr7.2:31373599-31373618 MS.gene27480:CDS 35.0%
GGAATCTGTGGAGAATTTAT+GGG + chr7.2:31375961-31375980 MS.gene27480:CDS 35.0%
GTTAATGTCTTCTCGAATAG+TGG - chr7.2:31374160-31374179 None:intergenic 35.0%
TACAAATCGAAGACGTGAAA+GGG + chr7.2:31374375-31374394 MS.gene27480:CDS 35.0%
TCAATTCCAAATCTCTCAGA+GGG + chr7.2:31373650-31373669 MS.gene27480:CDS 35.0%
TGGAATCTGTGGAGAATTTA+TGG + chr7.2:31375960-31375979 MS.gene27480:CDS 35.0%
TTACAAATCGAAGACGTGAA+AGG + chr7.2:31374374-31374393 MS.gene27480:CDS 35.0%
TTCAAACATTGTGGTGATTG+AGG + chr7.2:31375181-31375200 MS.gene27480:CDS 35.0%
TTCAATTCCAAATCTCTCAG+AGG + chr7.2:31373649-31373668 MS.gene27480:CDS 35.0%
! GTTTCAGCATCAATGCTTTT+TGG - chr7.2:31375112-31375131 None:intergenic 35.0%
! TCAATAGCAAGAGTTGACTT+GGG - chr7.2:31373710-31373729 None:intergenic 35.0%
!! AAGGTTTTGTATGCTGTATC+AGG + chr7.2:31376065-31376084 MS.gene27480:intron 35.0%
!! CAATTGCAAGTTGGAGATTT+TGG + chr7.2:31374488-31374507 MS.gene27480:CDS 35.0%
!! TGCAAAAGATTCTGAGACTT+AGG - chr7.2:31373680-31373699 None:intergenic 35.0%
!! TTTTAGAAGGAGTACATGCT+TGG + chr7.2:31374453-31374472 MS.gene27480:CDS 35.0%
ACCTCCTATCATTGCAAAGA+AGG + chr7.2:31375529-31375548 MS.gene27480:CDS 40.0%
AGACGTGAAAGGGAAGAAAT+TGG + chr7.2:31374385-31374404 MS.gene27480:CDS 40.0%
AGCAATGTTATTCACCTGGT+GGG - chr7.2:31374976-31374995 None:intergenic 40.0%
ATGGAGAAAGTTGGAATCTG+TGG + chr7.2:31375949-31375968 MS.gene27480:CDS 40.0%
CAGTCTATGCAATTGCAAGT+TGG + chr7.2:31374479-31374498 MS.gene27480:CDS 40.0%
CCTCCTATCATTGCAAAGAA+GGG + chr7.2:31375530-31375549 MS.gene27480:CDS 40.0%
CTCAATAGCAAGAGTTGACT+TGG - chr7.2:31373711-31373730 None:intergenic 40.0%
GGTGCATTTAGTCTCACAAT+AGG - chr7.2:31375727-31375746 None:intergenic 40.0%
GTCAGAGAAAAATGTGTGCA+TGG + chr7.2:31373730-31373749 MS.gene27480:CDS 40.0%
TAGCAATGTTATTCACCTGG+TGG - chr7.2:31374977-31374996 None:intergenic 40.0%
TGCAGTAACATTTAACCGGA+TGG + chr7.2:31374660-31374679 MS.gene27480:intron 40.0%
TGTTTCCTTTGTCGTCTTAC+AGG - chr7.2:31373788-31373807 None:intergenic 40.0%
TTCCTTGCGACATGATGAAT+TGG - chr7.2:31373761-31373780 None:intergenic 40.0%
TTTGGCCAAATAATAGCAGC+AGG + chr7.2:31374423-31374442 MS.gene27480:CDS 40.0%
! TTAGGAACTACTAGCTCTTG+TGG - chr7.2:31375035-31375054 None:intergenic 40.0%
AACATTTAACCGGATGGACC+CGG + chr7.2:31374666-31374685 MS.gene27480:CDS 45.0%
AATCGCCTGTAAGACGACAA+AGG + chr7.2:31373780-31373799 MS.gene27480:CDS 45.0%
ACCATAGGATGAACGAGCAA+TGG + chr7.2:31375903-31375922 MS.gene27480:intron 45.0%
CCCTTCTTTGCAATGATAGG+AGG - chr7.2:31375533-31375552 None:intergenic 45.0%
CCTATTATCAGTTTCTCCCC+CGG - chr7.2:31374688-31374707 None:intergenic 45.0%
CGGGGGAGAAACTGATAATA+GGG + chr7.2:31374686-31374705 MS.gene27480:CDS 45.0%
CTATTATCAGTTTCTCCCCC+GGG - chr7.2:31374687-31374706 None:intergenic 45.0%
CTCCAATTCATCATGTCGCA+AGG + chr7.2:31373756-31373775 MS.gene27480:CDS 45.0%
CTTCTCGAATAGTGGCACAA+TGG - chr7.2:31374152-31374171 None:intergenic 45.0%
GCTGAAACTTACTTGGGAAG+AGG + chr7.2:31375124-31375143 MS.gene27480:CDS 45.0%
GTCATGTAGGCTCAAACCTA+TGG + chr7.2:31374598-31374617 MS.gene27480:intron 45.0%
GTGCTCAGAATGGAGAAAGT+TGG + chr7.2:31375940-31375959 MS.gene27480:CDS 45.0%
TCCATTGCTCGTTCATCCTA+TGG - chr7.2:31375907-31375926 None:intergenic 45.0%
TTCCACCTATTTCGGAACCA+GGG + chr7.2:31374342-31374361 MS.gene27480:CDS 45.0%
TTTCCACCTATTTCGGAACC+AGG + chr7.2:31374341-31374360 MS.gene27480:CDS 45.0%
! AATAGGGTTTCGAAGGGCAT+CGG + chr7.2:31374702-31374721 MS.gene27480:CDS 45.0%
!! AGTGTGAGAAGTGCTCAGAA+TGG + chr7.2:31375930-31375949 MS.gene27480:CDS 45.0%
!! TTGCTTTTCACCACCACCAA+AGG - chr7.2:31373615-31373634 None:intergenic 45.0%
ACATTTAACCGGATGGACCC+GGG + chr7.2:31374667-31374686 MS.gene27480:CDS 50.0%
ATACCCCCTGGTTCCGAAAT+AGG - chr7.2:31374350-31374369 None:intergenic 50.0%
CCGGGGGAGAAACTGATAAT+AGG + chr7.2:31374685-31374704 MS.gene27480:CDS 50.0%
CTCGAATAGTGGCACAATGG+CGG - chr7.2:31374149-31374168 None:intergenic 50.0%
GCTAGTGATGTTGGTCGACT+TGG + chr7.2:31374181-31374200 MS.gene27480:CDS 50.0%
TCCACCTATTTCGGAACCAG+GGG + chr7.2:31374343-31374362 MS.gene27480:CDS 50.0%
!! GGCATCGGCTTCTTCTATAC+AGG + chr7.2:31374717-31374736 MS.gene27480:CDS 50.0%
ATTTAACCGGATGGACCCGG+GGG + chr7.2:31374669-31374688 MS.gene27480:CDS 55.0%
CATTTAACCGGATGGACCCG+GGG + chr7.2:31374668-31374687 MS.gene27480:CDS 55.0%
CCACCTATTTCGGAACCAGG+GGG + chr7.2:31374344-31374363 MS.gene27480:CDS 55.0%
! GGCTCTCCCTCTGAGAGATT+TGG - chr7.2:31373659-31373678 None:intergenic 55.0%
!! TGTTGGTCGACTTGGTCGCA+TGG + chr7.2:31374189-31374208 MS.gene27480:CDS 55.0%
CCCCCTGGTTCCGAAATAGG+TGG - chr7.2:31374347-31374366 None:intergenic 60.0%
GTTTCTCCCCCGGGTCCATC+CGG - chr7.2:31374678-31374697 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 31373578 31376114 31373578 ID=MS.gene27480
chr7.2 mRNA 31373578 31376114 31373578 ID=MS.gene27480.t1;Parent=MS.gene27480
chr7.2 exon 31373578 31373867 31373578 ID=MS.gene27480.t1.exon1;Parent=MS.gene27480.t1
chr7.2 CDS 31373578 31373867 31373578 ID=cds.MS.gene27480.t1;Parent=MS.gene27480.t1
chr7.2 exon 31374138 31374234 31374138 ID=MS.gene27480.t1.exon2;Parent=MS.gene27480.t1
chr7.2 CDS 31374138 31374234 31374138 ID=cds.MS.gene27480.t1;Parent=MS.gene27480.t1
chr7.2 exon 31374335 31374509 31374335 ID=MS.gene27480.t1.exon3;Parent=MS.gene27480.t1
chr7.2 CDS 31374335 31374509 31374335 ID=cds.MS.gene27480.t1;Parent=MS.gene27480.t1
chr7.2 exon 31374665 31374738 31374665 ID=MS.gene27480.t1.exon4;Parent=MS.gene27480.t1
chr7.2 CDS 31374665 31374738 31374665 ID=cds.MS.gene27480.t1;Parent=MS.gene27480.t1
chr7.2 exon 31374981 31375226 31374981 ID=MS.gene27480.t1.exon5;Parent=MS.gene27480.t1
chr7.2 CDS 31374981 31375226 31374981 ID=cds.MS.gene27480.t1;Parent=MS.gene27480.t1
chr7.2 exon 31375527 31375567 31375527 ID=MS.gene27480.t1.exon6;Parent=MS.gene27480.t1
chr7.2 CDS 31375527 31375567 31375527 ID=cds.MS.gene27480.t1;Parent=MS.gene27480.t1
chr7.2 exon 31375910 31375993 31375910 ID=MS.gene27480.t1.exon7;Parent=MS.gene27480.t1
chr7.2 CDS 31375910 31375993 31375910 ID=cds.MS.gene27480.t1;Parent=MS.gene27480.t1
chr7.2 exon 31376087 31376114 31376087 ID=MS.gene27480.t1.exon8;Parent=MS.gene27480.t1
chr7.2 CDS 31376087 31376114 31376087 ID=cds.MS.gene27480.t1;Parent=MS.gene27480.t1
Gene Sequence

>MS.gene27480

ATGACCTTTAATACTCCTTTTGGAAATTCAAATTCCTTTGGTGGTGGTGAAAAGCAACAACAAACTGAAAATTCAATTCCAAATCTCTCAGAGGGAGAGCCTAAGTCTCAGAATCTTTTGCACAAGCTTCCCAAGTCAACTCTTGCTATTGAGTCAGAGAAAAATGTGTGCATGGCATCTCCAATTCATCATGTCGCAAGGAAATCGCCTGTAAGACGACAAAGGAAACACATATCTGCACGTAATTTGCCTAAGATTACCGATCAAGAATTACAACAATTATCTGGAGAGTATCCATTACTTTACTAAACTTTTCATTATAGGTCAAATGTTTTATGCTAGGAAGAATCAATTTAACATGAATATAGTAGTACTTGATATTGTTATACCGTTCAATTTACTGTTGTATAATTCATGTCTATAAGTGAAATAATGTCTATAAATTTGTGTAATTCGATTACTCCTCATTTTATTTTATATTGAATGATAAACTTATTGTTTGTATGATTAGTACTCTTGGAAAAAAAATATTGTGAACCATAACCAATGATGTGTTAAAGCTTAAATTCCGCCATTGTGCCACTATTCGAGAAGACATTAACTGCTAGTGATGTTGGTCGACTTGGTCGCATGGTTCTTCCAAAATCATGTGTTGAAGTAAGTTTACAAACTAAGCAGCTAAATTTTTCTCTTGACCAATATTTGATGATAAATCTTTGTGTAATTTGTTAGAACTGAAAGTGGATGAATTTTGCAGACATATTTTCCACCTATTTCGGAACCAGGGGGTATTTATTTACAAATCGAAGACGTGAAAGGGAAGAAATTGGTGTTTAAATTTAGATTTTGGCCAAATAATAGCAGCAGGATATATGTTTTAGAAGGAGTACATGCTTGGATTCAGTCTATGCAATTGCAAGTTGGAGATTTTGGTATATTTTACTATCCACTCATAGTTCAATAGCAATTGATTTTACTATATGCCAATGTTACTTTTTTCATATACATTATTATTTCACTGTCATGTAGGCTCAAACCTATGGATAGAAATATACATAATATCTTCCTTTTACAAAAAAATTTGCAGTAACATTTAACCGGATGGACCCGGGGGAGAAACTGATAATAGGGTTTCGAAGGGCATCGGCTTCTTCTATACAGGTAACATGCACTAAATTGATACTAGCAAATATCTTGTGTAAGATTGCAAAAATGTGGAAAAACAAATAGCACACAAAACAGAAGTGTGAATTCTGCTATGTGTTATTAGAGGAAGAATTTTCTTAGAATGAATACATTAAGTAATATATTGATCATGAATATCATATGTCTAATTTGTTCTATGGCTCAATTTGAACTGAAACTTCCTATTTTTGTATTTATGTAAATTTCTTTCCCACCAGGTGAATAACATTGCTATGTCTAAAGGCATGAAAAGAAAGAGAATGTGTTTGCCACAAGAGCTAGTAGTTCCTAAGAAGAAAAGAACATGTGACATTGTGTCAAAAAGTAAGAGCTTGCTTATTGATAACCAAAAAGCATTGATGCTGAAACTTACTTGGGAAGAGGCTCAAGATTTTCTTCATCCACCTCCAACAATTAATTCAAACATTGTGGTGATTGAGGATCATGTCTTTGAAGAATATGAAGTGAGTTAACTTTTATGATCACTAACATGTACTGATTTTTATGAAATTCTTTATTTGGTGACCATATTATATCTTTGAGGACTAATTCATCAAAATAAACTTTAGAGGAATAGTATGGTGACATTTCAATTTTAAGGACTAATTTAGTGACAAAAATCTTTTTTTTTTGAAGGAAATTTAGTGACAAAAATCAATGAGTGTTTAATGTGACAATGCTATAAATCAATGAATGTTTGCTCAAAATCTTTGAATATGTTTTATTGGTGTTGATGGAAATTGACTATACTAAAATTGATGCAGGAACCTCCTATCATTGCAAAGAAGGGTATATTCATAAATGGGTAAGATAAACATGTGTCAGTGTTTCTGCTTGTTAATGTAGTTCAAATATTCACTTAGTCCTTACAAAATTATGAACTTTTGAGTTTAGTCCCTATACTATTTTTTTATCATTATTAATTCCTCAACATATTTAAAAAAACATGGTACTTATAGTTCCTATTGTGAGACTAAATGCACCCTGATCTTATAAAAGGTGTTTTCTATAAACACACTTTTATAATTTTCATTTGTTATAGGACTTTTTAAAACTTTTAACTTTGTTCCAACTTCTAATAGAGAAGTCAATATATATTTTCTTTATGACTATTGAATATTTCATATGCTTTGTGATTGAACCATAGGATGAACGAGCAATGGATACAGTGTGAGAAGTGCTCAGAATGGAGAAAGTTGGAATCTGTGGAGAATTTATGGGGTCAAAGAAGGTAAACATAAAATACTTTATATTTCTGGTGCAATGCAATTGTTAATAAATCTTGATTTTTGCAAGGTTTTTAAGGTTTTGTATGCTGTATCAGGTGTTCATGTTCTGCTCCCATGAGTTGA
Protein sequence

>MS.gene27480.t1

MTFNTPFGNSNSFGGGEKQQQTENSIPNLSEGEPKSQNLLHKLPKSTLAIESEKNVCMASPIHHVARKSPVRRQRKHISARNLPKITDQELQQLSGDLNSAIVPLFEKTLTASDVGRLGRMVLPKSCVETYFPPISEPGGIYLQIEDVKGKKLVFKFRFWPNNSSRIYVLEGVHAWIQSMQLQVGDFVTFNRMDPGEKLIIGFRRASASSIQVNNIAMSKGMKRKRMCLPQELVVPKKKRTCDIVSKSKSLLIDNQKALMLKLTWEEAQDFLHPPPTINSNIVVIEDHVFEEYEEPPIIAKKGIFINGMNEQWIQCEKCSEWRKLESVENLWGQRRCSCSAPMS