Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27694.t1 | XP_003623892.1 | 99.4 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.20E-86 | 328.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27694.t1 | Q1ECF5 | 72.4 | 174 | 46 | 1 | 1 | 174 | 1 | 172 | 1.8e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27694.t1 | G7L3J0 | 99.4 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 1.6e-86 | 328.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27694.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27694.t1 | MTR_7g076720 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.36e-155 | 429 |
| MS.gene27694.t1 | MTR_8g031490 | 77.295 | 207 | 36 | 4 | 1 | 199 | 1 | 204 | 1.10e-110 | 315 |
| MS.gene27694.t1 | MTR_3g070050 | 61.053 | 190 | 70 | 2 | 1 | 186 | 1 | 190 | 6.13e-86 | 252 |
| MS.gene27694.t1 | MTR_8g097300 | 52.830 | 212 | 96 | 2 | 1 | 212 | 1 | 208 | 1.17e-73 | 222 |
| MS.gene27694.t1 | MTR_3g070050 | 59.864 | 147 | 55 | 2 | 44 | 186 | 2 | 148 | 1.37e-62 | 191 |
| MS.gene27694.t1 | MTR_3g070050 | 44.444 | 81 | 45 | 0 | 3 | 83 | 61 | 141 | 1.74e-19 | 81.6 |
| MS.gene27694.t1 | MTR_1g017950 | 50.857 | 175 | 82 | 2 | 1 | 171 | 1 | 175 | 1.81e-60 | 188 |
| MS.gene27694.t1 | MTR_4g106800 | 47.977 | 173 | 83 | 2 | 2 | 169 | 3 | 173 | 3.81e-56 | 176 |
| MS.gene27694.t1 | MTR_4g106800 | 43.056 | 72 | 41 | 0 | 3 | 74 | 103 | 174 | 7.37e-15 | 70.1 |
| MS.gene27694.t1 | MTR_3g070033 | 55.882 | 68 | 30 | 0 | 119 | 186 | 6 | 73 | 1.69e-25 | 94.7 |
| MS.gene27694.t1 | MTR_3g070033 | 45.161 | 62 | 34 | 0 | 22 | 83 | 5 | 66 | 1.18e-13 | 63.9 |
| MS.gene27694.t1 | MTR_1g106100 | 37.037 | 108 | 64 | 2 | 59 | 164 | 20 | 125 | 1.92e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27694.t1 | AT2G45800 | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 3.87e-106 | 305 |
| MS.gene27694.t1 | AT1G01780 | 71.144 | 201 | 53 | 2 | 1 | 198 | 1 | 199 | 5.74e-106 | 303 |
| MS.gene27694.t1 | AT3G61230 | 69.811 | 212 | 59 | 3 | 2 | 209 | 3 | 213 | 1.75e-104 | 300 |
| MS.gene27694.t1 | AT2G39900 | 64.286 | 182 | 62 | 1 | 1 | 179 | 1 | 182 | 4.03e-90 | 263 |
| MS.gene27694.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene27694.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene27694.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene27694.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene27694.t1 | AT3G55770 | 54.167 | 216 | 63 | 2 | 1 | 180 | 1 | 216 | 3.21e-81 | 242 |
| MS.gene27694.t1 | AT2G45800 | 66.258 | 163 | 55 | 0 | 46 | 208 | 15 | 177 | 4.99e-75 | 225 |
| MS.gene27694.t1 | AT2G45800 | 50.617 | 81 | 40 | 0 | 3 | 83 | 68 | 148 | 3.70e-22 | 89.7 |
| MS.gene27694.t1 | AT1G10200 | 50.276 | 181 | 86 | 2 | 1 | 177 | 1 | 181 | 2.09e-61 | 190 |
| MS.gene27694.t1 | AT3G55770 | 67.769 | 121 | 37 | 1 | 1 | 119 | 1 | 121 | 2.67e-56 | 175 |
| MS.gene27694.t1 | AT3G55770 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 5.82e-23 | 90.5 |
| MS.gene27694.t1 | AT3G55770 | 63.780 | 127 | 42 | 2 | 1 | 123 | 1 | 127 | 1.97e-53 | 168 |
| MS.gene27694.t1 | AT3G55770 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 3.21e-23 | 90.9 |
| MS.gene27694.t1 | AT1G10200 | 47.059 | 136 | 68 | 2 | 46 | 177 | 4 | 139 | 3.81e-40 | 134 |
| MS.gene27694.t1 | AT1G10200 | 50.000 | 72 | 36 | 0 | 3 | 74 | 61 | 132 | 1.21e-17 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAAGTTGTTCAAAA+TGG | 0.152912 | 7.3:-29435023 | None:intergenic |
| GCCTGTTCCTCAGTTTCTTC+TGG | 0.236294 | 7.3:-29436249 | None:intergenic |
| CTTGAAAAGTTGTTCAAAAT+GGG | 0.287191 | 7.3:-29435022 | None:intergenic |
| TCATCCTCATCAGCTGGTTC+AGG | 0.337166 | 7.3:-29436216 | None:intergenic |
| TGAGAAGATAAATGAGTTGA+TGG | 0.377988 | 7.3:+29435244 | MS.gene27694:CDS |
| TCTTCCTATGCTGCACTAGA+TGG | 0.380773 | 7.3:+29436090 | MS.gene27694:CDS |
| CAAAATGGGGCTTGCAATAG+AGG | 0.393896 | 7.3:-29435008 | None:intergenic |
| ACCAGAAGAAACTGAGGAAC+AGG | 0.395424 | 7.3:+29436248 | MS.gene27694:CDS |
| GTTACCACAAGACTTGCTTT+AGG | 0.406861 | 7.3:+29436037 | MS.gene27694:CDS |
| TCATCAGCTGGTTCAGGTGG+TGG | 0.409594 | 7.3:-29436210 | None:intergenic |
| AACTGTTTATCCTTTGGAAA+AGG | 0.417247 | 7.3:+29435590 | MS.gene27694:CDS |
| GATGCCTCATCCTCATCAGC+TGG | 0.427885 | 7.3:-29436222 | None:intergenic |
| GAAAATGATGCTTGCAATAG+AGG | 0.440602 | 7.3:-29436116 | None:intergenic |
| GTTGATTTGTTAACTCTTGA+AGG | 0.447636 | 7.3:+29434413 | MS.gene27694:CDS |
| AATTTCAGCAAGAACTTTCA+AGG | 0.447985 | 7.3:+29435054 | MS.gene27694:CDS |
| CTTTGTGAAATAGATGTCAT+TGG | 0.477228 | 7.3:+29436005 | MS.gene27694:intron |
| GAACATAGAGGAGAGTCTAC+TGG | 0.477378 | 7.3:-29435532 | None:intergenic |
| ACTTGCTTTAGGTGTGCTCA+TGG | 0.497010 | 7.3:+29436048 | MS.gene27694:CDS |
| GATGAGTACTTACTCGTCAA+TGG | 0.501960 | 7.3:+29434978 | MS.gene27694:intron |
| CTTAAAATGCACTCACTGCA+AGG | 0.503886 | 7.3:+29434457 | MS.gene27694:CDS |
| TCCTCATCAGCTGGTTCAGG+TGG | 0.506548 | 7.3:-29436213 | None:intergenic |
| GAAATAGATGTCATTGGAAG+GGG | 0.521645 | 7.3:+29436011 | MS.gene27694:intron |
| GACACCATCTAGTGCAGCAT+AGG | 0.529057 | 7.3:-29436094 | None:intergenic |
| CAGCATAGGAAGAATGTGTA+AGG | 0.533785 | 7.3:-29436080 | None:intergenic |
| GTGAAATAGATGTCATTGGA+AGG | 0.534845 | 7.3:+29436009 | MS.gene27694:intron |
| TGAAATAGATGTCATTGGAA+GGG | 0.539587 | 7.3:+29436010 | MS.gene27694:intron |
| TTGAAAAGTTGTTCAAAATG+GGG | 0.540325 | 7.3:-29435021 | None:intergenic |
| AACATAGAGGAGAGTCTACT+GGG | 0.541859 | 7.3:-29435531 | None:intergenic |
| AACAACAAAATGTCATTCAC+AGG | 0.544997 | 7.3:+29434347 | None:intergenic |
| TCACTGCAAGGGAAATCTTA+CGG | 0.550486 | 7.3:+29434469 | MS.gene27694:CDS |
| AGCTGGTTCAGGTGGTGGAG+TGG | 0.554754 | 7.3:-29436205 | None:intergenic |
| TTGTGACAAGACTGTTTATG+TGG | 0.560240 | 7.3:+29434391 | MS.gene27694:CDS |
| ACCACCTGAACCAGCTGATG+AGG | 0.566047 | 7.3:+29436212 | MS.gene27694:CDS |
| TGAACCAGCTGATGAGGATG+AGG | 0.566240 | 7.3:+29436218 | MS.gene27694:CDS |
| TAAAGTTCCACTGAACATAG+AGG | 0.599123 | 7.3:-29435544 | None:intergenic |
| TTAAAATGCACTCACTGCAA+GGG | 0.603835 | 7.3:+29434458 | MS.gene27694:CDS |
| AGTACTTACTCGTCAATGGA+TGG | 0.612038 | 7.3:+29434982 | MS.gene27694:CDS |
| TGCTTTAGGTGTGCTCATGG+AGG | 0.614156 | 7.3:+29436051 | MS.gene27694:CDS |
| AGACTCTCCTCTATGTTCAG+TGG | 0.619328 | 7.3:+29435537 | MS.gene27694:CDS |
| AGGAACTCTTGATAAATGCA+AGG | 0.635782 | 7.3:+29434367 | MS.gene27694:CDS |
| ACAGGCAGAAGAAAAGTCTG+AGG | 0.636569 | 7.3:+29436266 | MS.gene27694:CDS |
| ATCAAAACCAGAAGAAACTG+AGG | 0.663705 | 7.3:+29436242 | MS.gene27694:CDS |
| CATAGGAAGAATGTGTAAGG+TGG | 0.667933 | 7.3:-29436077 | None:intergenic |
| CACACCTAAAGCAAGTCTTG+TGG | 0.697099 | 7.3:-29436041 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAGTTGAAATTTAAA+TGG | - | chr7.3:29435754-29435773 | None:intergenic | 10.0% |
| !! | TCATTACAAAAATTAAATTA+TGG | - | chr7.3:29434857-29434876 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | - | chr7.3:29435436-29435455 | None:intergenic | 10.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | + | chr7.3:29434616-29434635 | MS.gene27694:intron | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | + | chr7.3:29435337-29435356 | MS.gene27694:intron | 15.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | - | chr7.3:29434850-29434869 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | + | chr7.3:29435410-29435429 | MS.gene27694:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | - | chr7.3:29435286-29435305 | None:intergenic | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | + | chr7.3:29435197-29435216 | MS.gene27694:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | + | chr7.3:29434645-29434664 | MS.gene27694:intron | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | + | chr7.3:29435116-29435135 | MS.gene27694:intron | 20.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | + | chr7.3:29434636-29434655 | MS.gene27694:intron | 20.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | - | chr7.3:29435681-29435700 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | - | chr7.3:29435465-29435484 | None:intergenic | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | + | chr7.3:29434668-29434687 | MS.gene27694:intron | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | - | chr7.3:29435025-29435044 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | + | chr7.3:29434539-29434558 | MS.gene27694:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | - | chr7.3:29435024-29435043 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | - | chr7.3:29434448-29434467 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | + | chr7.3:29435208-29435227 | MS.gene27694:intron | 25.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | - | chr7.3:29434443-29434462 | None:intergenic | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | + | chr7.3:29435291-29435310 | MS.gene27694:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | - | chr7.3:29435413-29435432 | None:intergenic | 25.0% |
| AATTTCAGCAAGAACTTTCA+AGG | + | chr7.3:29435054-29435073 | MS.gene27694:CDS | 30.0% | |
| ACTCGATTGAAAATAGTGTT+AGG | + | chr7.3:29435778-29435797 | MS.gene27694:intron | 30.0% | |
| ACTTGTGTATAAAGGATATC+CGG | - | chr7.3:29434667-29434686 | None:intergenic | 30.0% | |
| AGTAATCTCAACCATTCATA+AGG | + | chr7.3:29435714-29435733 | MS.gene27694:intron | 30.0% | |
| CACAAAAACTGTTTATCCTT+TGG | + | chr7.3:29435584-29435603 | MS.gene27694:CDS | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | - | chr7.3:29435026-29435045 | None:intergenic | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | + | chr7.3:29435779-29435798 | MS.gene27694:intron | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | + | chr7.3:29434673-29434692 | MS.gene27694:intron | 30.0% | |
| CTTTGTGAAATAGATGTCAT+TGG | + | chr7.3:29436005-29436024 | MS.gene27694:intron | 30.0% | |
| TCTAAACTTGTGTCTAAGTT+GGG | + | chr7.3:29434937-29434956 | MS.gene27694:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | + | chr7.3:29436010-29436029 | MS.gene27694:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | - | chr7.3:29434699-29434718 | None:intergenic | 30.0% |
| ! | AACTGTTTATCCTTTGGAAA+AGG | + | chr7.3:29435590-29435609 | MS.gene27694:CDS | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | + | chr7.3:29435875-29435894 | MS.gene27694:intron | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | - | chr7.3:29435603-29435622 | None:intergenic | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | + | chr7.3:29435877-29435896 | MS.gene27694:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | + | chr7.3:29435876-29435895 | MS.gene27694:intron | 30.0% |
| ! | CCATTTTGAACAACTTTTCA+AGG | + | chr7.3:29435023-29435042 | MS.gene27694:CDS | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | + | chr7.3:29435867-29435886 | MS.gene27694:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | - | chr7.3:29435282-29435301 | None:intergenic | 30.0% |
| ! | TCATTTTCAACAGCTTTTCA+TGG | + | chr7.3:29436131-29436150 | MS.gene27694:CDS | 30.0% |
| ! | TCGATTGATTTCCTTATGAA+TGG | - | chr7.3:29435728-29435747 | None:intergenic | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | + | chr7.3:29435244-29435263 | MS.gene27694:CDS | 30.0% |
| !! | ACTTGCACTTTGTATTGATT+TGG | + | chr7.3:29435170-29435189 | MS.gene27694:intron | 30.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | + | chr7.3:29434413-29434432 | MS.gene27694:CDS | 30.0% |
| !!! | TCAACGCTCTTTATTTTTTG+TGG | + | chr7.3:29435825-29435844 | MS.gene27694:intron | 30.0% |
| AAGTTGGGTTTCATGTATGT+TGG | + | chr7.3:29434952-29434971 | MS.gene27694:intron | 35.0% | |
| AGGAACTCTTGATAAATGCA+AGG | + | chr7.3:29434367-29434386 | MS.gene27694:CDS | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | + | chr7.3:29436242-29436261 | MS.gene27694:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | - | chr7.3:29434675-29434694 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | + | chr7.3:29434672-29434691 | MS.gene27694:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | - | chr7.3:29436119-29436138 | None:intergenic | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | + | chr7.3:29436011-29436030 | MS.gene27694:intron | 35.0% | |
| GTCTAAACTTGTGTCTAAGT+TGG | + | chr7.3:29434936-29434955 | MS.gene27694:intron | 35.0% | |
| GTGAAATAGATGTCATTGGA+AGG | + | chr7.3:29436009-29436028 | MS.gene27694:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | - | chr7.3:29435547-29435566 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | - | chr7.3:29435927-29435946 | None:intergenic | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | + | chr7.3:29434458-29434477 | MS.gene27694:CDS | 35.0% | |
| TTAACTTTGCTGCGTTCTTA+AGG | + | chr7.3:29434733-29434752 | MS.gene27694:intron | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | + | chr7.3:29434391-29434410 | MS.gene27694:CDS | 35.0% | |
| TTGTTCTTCCTTTACAGAAC+AGG | + | chr7.3:29435505-29435524 | MS.gene27694:intron | 35.0% | |
| ! | TAAGGTTCGATTTGCACATA+GGG | + | chr7.3:29434751-29434770 | MS.gene27694:intron | 35.0% |
| ! | TTAAGGTTCGATTTGCACAT+AGG | + | chr7.3:29434750-29434769 | MS.gene27694:intron | 35.0% |
| !! | GAACAACTTTTCAAGGAATC+TGG | + | chr7.3:29435030-29435049 | MS.gene27694:CDS | 35.0% |
| !! | GTTATAAAGAGCGTTGATAG+CGG | - | chr7.3:29435965-29435984 | None:intergenic | 35.0% |
| !! | TAAAGAGCGTTGATAGTGAA+TGG | - | chr7.3:29435818-29435837 | None:intergenic | 35.0% |
| AACATAGAGGAGAGTCTACT+GGG | - | chr7.3:29435534-29435553 | None:intergenic | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | + | chr7.3:29434982-29435001 | MS.gene27694:CDS | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | - | chr7.3:29436083-29436102 | None:intergenic | 40.0% | |
| CATAGGAAGAATGTGTAAGG+TGG | - | chr7.3:29436080-29436099 | None:intergenic | 40.0% | |
| CGTAATTTATGCAGGAGCAA+GGG | - | chr7.3:29435919-29435938 | None:intergenic | 40.0% | |
| CTTAAAATGCACTCACTGCA+AGG | + | chr7.3:29434457-29434476 | MS.gene27694:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | + | chr7.3:29434978-29434997 | MS.gene27694:intron | 40.0% | |
| GTAATTTATGCAGGAGCAAG+GGG | - | chr7.3:29435918-29435937 | None:intergenic | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | + | chr7.3:29434469-29434488 | MS.gene27694:CDS | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | + | chr7.3:29436138-29436157 | MS.gene27694:CDS | 40.0% |
| ! | GTTACCACAAGACTTGCTTT+AGG | + | chr7.3:29436037-29436056 | MS.gene27694:CDS | 40.0% |
| ACAGGCAGAAGAAAAGTCTG+AGG | + | chr7.3:29436266-29436285 | MS.gene27694:CDS | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | + | chr7.3:29436248-29436267 | MS.gene27694:CDS | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | + | chr7.3:29435537-29435556 | MS.gene27694:CDS | 45.0% | |
| AGTTTGGTAGGGCCATAGTA+TGG | + | chr7.3:29434684-29434703 | MS.gene27694:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | - | chr7.3:29435859-29435878 | None:intergenic | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | - | chr7.3:29435011-29435030 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | - | chr7.3:29436044-29436063 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | - | chr7.3:29435535-29435554 | None:intergenic | 45.0% | |
| GCGTAATTTATGCAGGAGCA+AGG | - | chr7.3:29435920-29435939 | None:intergenic | 45.0% | |
| TCTTCCTATGCTGCACTAGA+TGG | + | chr7.3:29436090-29436109 | MS.gene27694:CDS | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | + | chr7.3:29436048-29436067 | MS.gene27694:CDS | 45.0% |
| CAATGTCAGCTAAGCTCACG+TGG | + | chr7.3:29435939-29435958 | MS.gene27694:intron | 50.0% | |
| CTGGGTGTCCTGTTCTGTAA+AGG | - | chr7.3:29435516-29435535 | None:intergenic | 50.0% | |
| GACACCATCTAGTGCAGCAT+AGG | - | chr7.3:29436097-29436116 | None:intergenic | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | - | chr7.3:29436252-29436271 | None:intergenic | 50.0% | |
| TGAACCAGCTGATGAGGATG+AGG | + | chr7.3:29436218-29436237 | MS.gene27694:CDS | 50.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | + | chr7.3:29435373-29435392 | MS.gene27694:intron | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | + | chr7.3:29435845-29435864 | MS.gene27694:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | + | chr7.3:29435884-29435903 | MS.gene27694:intron | 50.0% |
| ! | CAACACCGCATCTGCGATTT+TGG | - | chr7.3:29435381-29435400 | None:intergenic | 50.0% |
| ! | TCATCCTCATCAGCTGGTTC+AGG | - | chr7.3:29436219-29436238 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | + | chr7.3:29436051-29436070 | MS.gene27694:CDS | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | + | chr7.3:29435885-29435904 | MS.gene27694:intron | 50.0% |
| ACCACCTGAACCAGCTGATG+AGG | + | chr7.3:29436212-29436231 | MS.gene27694:CDS | 55.0% | |
| GATGCCTCATCCTCATCAGC+TGG | - | chr7.3:29436225-29436244 | None:intergenic | 55.0% | |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | + | chr7.3:29435886-29435905 | MS.gene27694:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | - | chr7.3:29436213-29436232 | None:intergenic | 55.0% |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | - | chr7.3:29436216-29436235 | None:intergenic | 55.0% |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | + | chr7.3:29435384-29435403 | MS.gene27694:intron | 55.0% |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | - | chr7.3:29436208-29436227 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 29434356 | 29436302 | 29434356 | ID=MS.gene27694 |
| chr7.3 | mRNA | 29434356 | 29436302 | 29434356 | ID=MS.gene27694.t1;Parent=MS.gene27694 |
| chr7.3 | exon | 29434356 | 29434490 | 29434356 | ID=MS.gene27694.t1.exon1;Parent=MS.gene27694.t1 |
| chr7.3 | CDS | 29434356 | 29434490 | 29434356 | ID=cds.MS.gene27694.t1;Parent=MS.gene27694.t1 |
| chr7.3 | exon | 29434979 | 29435075 | 29434979 | ID=MS.gene27694.t1.exon2;Parent=MS.gene27694.t1 |
| chr7.3 | CDS | 29434979 | 29435075 | 29434979 | ID=cds.MS.gene27694.t1;Parent=MS.gene27694.t1 |
| chr7.3 | exon | 29435234 | 29435265 | 29435234 | ID=MS.gene27694.t1.exon3;Parent=MS.gene27694.t1 |
| chr7.3 | CDS | 29435234 | 29435265 | 29435234 | ID=cds.MS.gene27694.t1;Parent=MS.gene27694.t1 |
| chr7.3 | exon | 29435522 | 29435611 | 29435522 | ID=MS.gene27694.t1.exon4;Parent=MS.gene27694.t1 |
| chr7.3 | CDS | 29435522 | 29435611 | 29435522 | ID=cds.MS.gene27694.t1;Parent=MS.gene27694.t1 |
| chr7.3 | exon | 29436018 | 29436302 | 29436018 | ID=MS.gene27694.t1.exon5;Parent=MS.gene27694.t1 |
| chr7.3 | CDS | 29436018 | 29436302 | 29436018 | ID=cds.MS.gene27694.t1;Parent=MS.gene27694.t1 |
| Gene Sequence |
| Protein sequence |
