AlfalfaGEDB | MS.gene27798

M. sativa cultivar XinJiangDaYe / MS.gene27798

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27798.t1	XP_013446647.1	93.4	274	13	2	1	272	111	381	1.50E-140	508.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27798.t1	Q700D9	65.1	63	22	0	1	63	23	85	2.2e-18	94.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27798.t1	G7LJE5	93.4	274	13	2	1	272	109	379	1.1e-140	508.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene27798.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27798.t1	MTR_8g086410	96.350	274	5	2	1	272	109	379	0.0	545
MS.gene27798.t1	MTR_8g086410	96.350	274	5	2	1	272	111	381	0.0	545
MS.gene27798.t1	MTR_8g086410	93.950	281	5	3	1	272	111	388	0.0	538
MS.gene27798.t1	MTR_2g016220	45.051	293	85	9	1	272	89	326	1.06e-64	207
MS.gene27798.t1	MTR_2g016220	45.051	293	85	9	1	272	89	326	1.77e-64	206
MS.gene27798.t1	MTR_2g016220	44.444	297	85	10	1	272	89	330	1.47e-62	201
MS.gene27798.t1	MTR_2g084230	46.392	194	76	7	1	194	97	262	3.15e-38	136
MS.gene27798.t1	MTR_2g084230	46.392	194	76	7	1	194	97	262	8.61e-38	137
MS.gene27798.t1	MTR_7g069660	79.710	69	13	1	2	70	72	139	7.95e-32	120
MS.gene27798.t1	MTR_2g023580	55.056	89	36	2	1	89	55	139	1.55e-26	103

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27798.t1	AT2G38300	77.273	66	15	1	66	54	119	8.92e-31	117
MS.gene27798.t1	AT2G42660	81.356	59	11	1	59	50	108	9.88e-28	107
MS.gene27798.t1	AT2G40260	84.746	59	9	2	60	83	141	1.93e-27	109
MS.gene27798.t1	AT4G04605	60.759	79	31	1	79	14	92	3.00e-27	105
MS.gene27798.t1	AT2G02060	76.364	55	13	1	55	29	83	3.75e-24	98.2
MS.gene27798.t1	AT2G02060	76.364	55	13	1	55	29	83	3.75e-24	98.2
MS.gene27798.t1	AT1G14600	65.079	63	22	1	63	23	85	1.23e-23	96.7
MS.gene27798.t1	AT5G42630	65.574	61	21	2	62	106	166	6.91e-21	88.6
MS.gene27798.t1	AT5G42630	65.574	61	21	2	62	106	166	1.46e-20	89.0
MS.gene27798.t1	AT4G04580	60.000	60	24	2	61	15	74	1.50e-19	83.6

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Find 67 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGACGAGGCTGGACA+AGG	0.608837	4.3:-14282308	MS.gene27798:intron
AACATCACTTAGACCCGCTG+AGG	0.687013	4.3:-14280983	MS.gene27798:CDS
AAGCTGCTGGTTCAAAGTTA+TGG	0.381198	4.3:+14281161	None:intergenic
AATGTTACCTTAATCCGAAA+CGG	0.472630	4.3:+14280865	None:intergenic
AATTCATTGCTCATGTAGCT+TGG	0.505208	4.3:+14281225	None:intergenic
AATTTCTTGAAGAGAAAAGA+TGG	0.506639	4.3:-14281086	MS.gene27798:CDS
ACCTCATCAACATTTCAAGA+TGG	0.592000	4.3:-14281487	MS.gene27798:CDS
AGAAATGGAACCTAATTCAT+GGG	0.583302	4.3:+14281536	None:intergenic
AGAAATTGGCTTGGTCTCAT+AGG	0.398094	4.3:+14281102	None:intergenic
AGACCCGCTGAGGTGAGCTT+TGG	0.428693	4.3:-14280973	MS.gene27798:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTGCACATGTGTAAAA+CGG	-	chr4.3:14282314-14282333	MS.gene27798:CDS	30.0%
ACGTGAAACAAAAATATCAG+TGG	+	chr4.3:14281244-14281263	None:intergenic	30.0%
AGAAATGGAACCTAATTCAT+GGG	+	chr4.3:14282611-14282630	None:intergenic	30.0%
ATAAAAGAGTGATGAAGATC+AGG	+	chr4.3:14280897-14280916	None:intergenic	30.0%
ATGTGAATGTGAATGTGATA+AGG	+	chr4.3:14282758-14282777	None:intergenic	30.0%
CGAATGATTTATCTTGGAAT+TGG	-	chr4.3:14281479-14281498	MS.gene27798:CDS	30.0%
GAAGTAAGTATCATTAGAGT+TGG	+	chr4.3:14282392-14282411	None:intergenic	30.0%
GATGATTTAAGTACCATTCT+TGG	+	chr4.3:14282888-14282907	None:intergenic	30.0%
GGCAGACAAAAAAAAATTCA+AGG	+	chr4.3:14281892-14281911	None:intergenic	30.0%
GGTACTTAAATCATCAATCT+TGG	-	chr4.3:14282893-14282912	MS.gene27798:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	14280873	14283293	14280873	ID=MS.gene27798
chr4.3	mRNA	14280873	14283293	14280873	ID=MS.gene27798.t1;Parent=MS.gene27798
chr4.3	exon	14283218	14283293	14283218	ID=MS.gene27798.t1.exon1;Parent=MS.gene27798.t1
chr4.3	CDS	14283218	14283293	14283218	ID=cds.MS.gene27798.t1;Parent=MS.gene27798.t1
chr4.3	exon	14283006	14283082	14283006	ID=MS.gene27798.t1.exon2;Parent=MS.gene27798.t1
chr4.3	CDS	14283006	14283082	14283006	ID=cds.MS.gene27798.t1;Parent=MS.gene27798.t1
chr4.3	exon	14282309	14282345	14282309	ID=MS.gene27798.t1.exon3;Parent=MS.gene27798.t1
chr4.3	CDS	14282309	14282345	14282309	ID=cds.MS.gene27798.t1;Parent=MS.gene27798.t1
chr4.3	exon	14281369	14281582	14281369	ID=MS.gene27798.t1.exon4;Parent=MS.gene27798.t1
chr4.3	CDS	14281369	14281582	14281369	ID=cds.MS.gene27798.t1;Parent=MS.gene27798.t1
chr4.3	exon	14280873	14281284	14280873	ID=MS.gene27798.t1.exon5;Parent=MS.gene27798.t1
chr4.3	CDS	14280873	14281284	14280873	ID=cds.MS.gene27798.t1;Parent=MS.gene27798.t1

Gene Sequence

>MS.gene27798

ATGCCTAGGCTTAGGTGGACTCCTGATCTTCATCACTCTTTTATGCATGCTGTTGAAAGGCTTGGAGGCCAAGAGAGTAAGTATATATATATTTTTTGTCTTAATTCTTTAGAAGAAAAAACTATGCCCTAGATAATTGTGAAATTGTTTAATTTGGTTGAAGTTGAAAACTTTATGTTGTGTTCATTATTAATGTTGGTGGTGCATGCAGGAGCAACACCCAAATTGGTGCTTCAACTGATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGGTATATAAGACAAAATTTGAGGTAGATATATATGTTTCTTAAAAGAAAAAAAACAAAACTGTACAACTTCAATCTTATAGCCACTGATATTTTTGTTTCACGTAAAATATATTAAAATAAAAGGGGGGAATAATTGAGAAACATATATTAGATCAATTAATTTTTCTGCAGGGTGATCCGTGTCCACCGGGGGATAATGTTTGTAGGTTTTTTTAATTTGATTTTTGATGTTCTTTATGATAAGTTTTATAAAAAAATAAAAATCATTTATATATTCAAACAATTTGTACATTCCAAATTAATCAATAAAAAAAATACCGAATGATTTATCTTGGAATTGGATATTTTTTTAAAAATGATTTTTAGACACCAAAGAATAATATACCACTAGAGAGAAAAAAAAATAAAGATAGCGATGCAATAAATACAATAGATTGGTTGGGGATGTGATATGAAGAAAGAGATAGAAAAAATATGAAGTGTTGGATGAATGTAAAAAAAGTAAAAGTGTTTAAATATAATTGCTCTTTTTTTTTTTCCTTGATTTTTTTTTTTGGTGGTGATGGTATTTTTTTGGTAGTGATTTTATTTTTCCTTGAAATTAAGTGTTGATATATGTATTTCATAAATCATTTTATGGCTATGCAATTTTCATTTCAGATGTACCGGAGCAAGAAACTTGACGAGGCTGGACAAGGTAAGGATTGCCCTAAATCTTGTTAGACACACCTTGAATTTTTTTTTGTCTGCCCTATAATGAAAAAAAAATTCTAAATCTGCCCTACATGAAAAAGAAAGTCCAAAACTACCATACTTTTTCTCTTTCTCTTTATTCCCCGCAAAACAGGTTTGGGGGGTGTCCTTCCCAGCAATTTCATTTTGGGGGGAAGGTCCTGTTTTTTTGTCTTATAAATCTACTACATGCTTTGAGAATATACAATCATTCAAACCGCTACTCTCACTCTTCAAATAAGTGACATCTTTTGGCTATGTGTACTATTCATATAATATATTTTGACCATATTTTTTTCACTGTTATATAAAAACAAATGGTGTCATATAAGATGTTGTGTGAATTTGTCTCTATCAACATTTTAAAAACATCAAATTTTATATTTTTTTTAATTACATAATTAAAAATATTAAAGATTAAAATTGTGCACATGTGTAAAACGGTCAATGATGTCATCTATTTTAAAATTGATGGAGTAAATGTTATGTTAGATTCCCAACTCTAATGATACTTACTTCTGTCTTTTAAAAAAAAACATTATTTTTTAGTAATTACATAAAAGAGTAGGTCTAATTAAAAATTTGTACTGGGTGTTCAAAATCAAAGTATTACAATACAAGGGCTTAGGGTTAGTTTACTTTAGCCGATTTTGTTTATTTTGACATTTATTCATATTTATTTACTTTGCAGTACTAAGTCCAACACACAGATCAACCCATGAATTAGGTTCCATTTCTCACCATGTAGCCCATCAGTCCATGATACCTCATCAACATTTCAAGATGGCAAATGGTGGAATTGTTCTAGAAACTAATTACAACCAGCACAGTTATAATTTCCACAGTCTCCTGCATCCCTCATCCTTATCACATTCACATTCACATTCAAAGCCCATCAATTCAAGGTAAACTATATATGCATACATTCTTATTTATTTATTTTATTTTTTTCCATTCAAGTGGCATTAAAGTTACATTTTTTTACTTAGGCACCAAGAATGGTACTTAAATCATCAATCTTGGAGACCAAGCTACATGAGCAATGAATTAGTTATGCCATCAACAGCCATTAATACACAAGGAAGATCATCCATAACTTTGAACCAGCAGCTTCAAGTTAAGGATACTACAGTCACTACCACACTTGCTCCTATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCCTTAGATATCATGAACAATCATCCATATTGGAAGAAAAATTTACATGATAATTTTTCTAATAATACTTGTGATAGAACATCACTTAGACCCGCTGAGGTGAGCTTTGGAAACAACACAAGAAGCAGGGAAAACATATCAAACATCAATAATGACCACAACTATTTTAATAGTTCAAAGATTGAATTTGATCCCCCGTTTCGGATTAAG

Protein sequence

>MS.gene27798.t1

MPRLRWTPDLHHSFMHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSPTHRSTHELGSISHHVAHQSMIPHQHFKMANGGIVLETNYNQHSYNFHSLLHPSSLSHSHSHSKPINSRHQEWYLNHQSWRPSYMSNELVMPSTAINTQGRSSITLNQQLQVKDTTVTTTLAPMRPSQFLEEKRWPPLDIMNNHPYWKKNLHDNFSNNTCDRTSLRPAEVSFGNNTRSRENISNINNDHNYFNSSKIEFDPPFRIK