AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27866

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27866.t1 MTR_8g087860 98.551 69 1 0 1 69 8 76 2.45e-45 145
MS.gene27866.t1 MTR_2g017865 95.652 69 2 1 1 69 8 75 5.40e-42 137
MS.gene27866.t1 MTR_3g452380 96.721 61 2 0 9 69 15 75 6.51e-38 126
MS.gene27866.t1 MTR_3g005530 95.000 60 3 0 10 69 1 60 1.59e-36 122
MS.gene27866.t1 MTR_5g046870 76.271 59 14 0 10 68 1 59 2.41e-29 100
MS.gene27866.t1 MTR_8g033270 77.966 59 13 0 10 68 1 59 7.17e-29 103
MS.gene27866.t1 MTR_3g084980 82.456 57 10 0 10 66 1 57 1.23e-28 102
MS.gene27866.t1 MTR_8g097090 76.667 60 14 0 10 69 1 60 1.31e-28 102
MS.gene27866.t1 MTR_6g015975 76.667 60 14 0 10 69 1 60 1.39e-28 102
MS.gene27866.t1 MTR_7g075850 75.000 60 15 0 10 69 1 60 2.28e-28 101
MS.gene27866.t1 MTR_2g461710 70.000 60 18 0 10 69 1 60 4.58e-28 95.9
MS.gene27866.t1 MTR_8g033220 79.310 58 12 0 12 69 3 60 5.36e-28 100
MS.gene27866.t1 MTR_8g033220 79.310 58 12 0 12 69 3 60 6.88e-28 100
MS.gene27866.t1 MTR_7g075870 75.862 58 14 0 12 69 3 60 8.80e-28 99.4
MS.gene27866.t1 MTR_7g075870 75.862 58 14 0 12 69 3 60 8.98e-28 99.4
MS.gene27866.t1 MTR_4g102530 77.586 58 13 0 12 69 3 60 1.74e-27 98.6
MS.gene27866.t1 MTR_4g109810 76.271 59 14 0 10 68 1 59 2.07e-27 99.0
MS.gene27866.t1 MTR_7g016600 79.661 59 12 0 10 68 1 59 5.50e-27 98.2
MS.gene27866.t1 MTR_4g109830 70.000 60 18 0 10 69 1 60 9.15e-27 97.4
MS.gene27866.t1 MTR_5g066960 63.934 61 22 0 10 70 1 61 1.80e-26 91.7
MS.gene27866.t1 MTR_8g066260 71.667 60 17 0 10 69 1 60 2.57e-26 96.3
MS.gene27866.t1 MTR_1g053070 74.576 59 15 0 10 68 1 59 4.56e-26 95.9
MS.gene27866.t1 MTR_0003s0590 68.333 60 19 0 10 69 1 60 4.30e-25 93.6
MS.gene27866.t1 MTR_3g088615 68.421 57 18 0 10 66 1 57 4.36e-25 91.7
MS.gene27866.t1 MTR_3g113030 71.930 57 16 0 10 66 1 57 9.53e-25 92.0
MS.gene27866.t1 MTR_4g093030 67.213 61 20 0 10 70 1 61 1.37e-24 89.7
MS.gene27866.t1 MTR_1g101970 68.966 58 18 0 10 67 1 58 1.56e-24 90.5
MS.gene27866.t1 MTR_4g036050 66.102 59 20 0 10 68 1 59 1.64e-24 90.1
MS.gene27866.t1 MTR_4g036050 66.102 59 20 0 10 68 1 59 1.86e-24 90.1
MS.gene27866.t1 MTR_5g032520 69.492 59 18 0 10 68 1 59 2.11e-24 90.9
MS.gene27866.t1 MTR_4g036050 66.102 59 20 0 10 68 1 59 2.28e-24 90.1
MS.gene27866.t1 MTR_4g036050 66.102 59 20 0 10 68 1 59 2.46e-24 90.1
MS.gene27866.t1 MTR_5g032150 69.492 59 18 0 10 68 1 59 2.61e-24 90.9
MS.gene27866.t1 MTR_5g031000 67.797 59 19 0 10 68 1 59 3.82e-24 90.5
MS.gene27866.t1 MTR_5g031000 67.797 59 19 0 10 68 1 59 4.27e-24 90.5
MS.gene27866.t1 MTR_2g009890 72.881 59 16 0 10 68 1 59 5.62e-24 90.9
MS.gene27866.t1 MTR_5g046790 65.000 60 21 0 10 69 1 60 1.03e-23 89.0
MS.gene27866.t1 MTR_6g464720 67.797 59 19 0 10 68 1 59 1.00e-22 87.0
MS.gene27866.t1 MTR_4g084740 65.574 61 21 0 10 70 1 61 2.17e-22 87.4
MS.gene27866.t1 MTR_7g016630 67.797 59 19 0 10 68 1 59 2.38e-22 86.3
MS.gene27866.t1 MTR_3g102570 67.213 61 20 0 10 70 1 61 2.96e-22 87.0
MS.gene27866.t1 MTR_5g021270 70.175 57 17 0 10 66 1 57 3.69e-22 85.1
MS.gene27866.t1 MTR_5g021270 70.175 57 17 0 10 66 1 57 4.65e-22 85.1
MS.gene27866.t1 MTR_1g029670 61.404 57 22 0 10 66 1 57 5.57e-22 83.6
MS.gene27866.t1 MTR_1g038300 63.333 60 22 0 10 69 1 60 2.22e-21 83.2
MS.gene27866.t1 MTR_5g066180 65.000 60 21 0 10 69 1 60 4.95e-21 82.4
MS.gene27866.t1 MTR_1g041615 71.429 49 14 0 22 70 17 65 4.98e-20 77.4
MS.gene27866.t1 MTR_4g093970 62.069 58 22 0 12 69 29 86 2.85e-18 75.1
MS.gene27866.t1 MTR_8g086290 54.839 62 28 0 3 64 4 65 7.10e-18 73.2
MS.gene27866.t1 MTR_2g030740 53.846 65 30 0 4 68 2 66 1.73e-17 73.2
MS.gene27866.t1 MTR_2g093190 50.769 65 31 1 4 68 3 66 2.43e-17 72.8
MS.gene27866.t1 MTR_8g079502 55.932 59 26 0 10 68 1 59 3.52e-17 71.2
MS.gene27866.t1 MTR_1g108510 53.968 63 27 1 8 68 4 66 3.75e-17 72.0
MS.gene27866.t1 MTR_3g030770 53.968 63 27 1 8 68 4 66 4.93e-17 72.0
MS.gene27866.t1 MTR_1g108580 52.308 65 30 1 4 68 3 66 4.98e-17 72.0
MS.gene27866.t1 MTR_3g052920 55.385 65 29 0 4 68 2 66 5.91e-17 71.6
MS.gene27866.t1 MTR_1g047550 55.932 59 26 0 10 68 1 59 1.14e-16 70.1
MS.gene27866.t1 MTR_2g105290 58.333 60 24 1 6 64 6 65 1.22e-16 69.7
MS.gene27866.t1 MTR_8g043650 51.562 64 31 0 4 67 2 65 5.06e-16 69.3
MS.gene27866.t1 MTR_1g054265 52.542 59 28 0 10 68 1 59 6.81e-16 67.8
MS.gene27866.t1 MTR_0121s0100 50.794 63 29 1 8 68 4 66 1.03e-15 66.2
MS.gene27866.t1 MTR_1g105920 50.769 65 32 0 4 68 2 66 1.50e-15 68.2
MS.gene27866.t1 MTR_3g052870 50.769 65 32 0 4 68 2 66 1.67e-15 67.8
MS.gene27866.t1 MTR_5g045560 49.231 65 33 0 4 68 2 66 1.78e-15 67.8
MS.gene27866.t1 MTR_5g041650 54.717 53 24 0 10 62 38 90 2.02e-15 68.9
MS.gene27866.t1 MTR_1g075600 50.769 65 31 1 4 68 3 66 2.19e-15 67.8
MS.gene27866.t1 MTR_1g063160 50.847 59 29 0 10 68 1 59 2.52e-15 66.6
MS.gene27866.t1 MTR_1g077360 53.448 58 27 0 11 68 9 66 2.81e-15 67.4
MS.gene27866.t1 MTR_1g105910 51.562 64 31 0 4 67 2 65 3.02e-15 67.4
MS.gene27866.t1 MTR_1g106070 51.724 58 28 0 11 68 9 66 3.11e-15 66.2
MS.gene27866.t1 MTR_1g012570 51.562 64 31 0 4 67 2 65 3.25e-15 67.0
MS.gene27866.t1 MTR_8g051580 50.847 59 29 0 10 68 1 59 6.40e-15 65.5
MS.gene27866.t1 MTR_4g131030 52.542 59 28 0 10 68 1 59 7.74e-15 65.9
MS.gene27866.t1 MTR_2g085250 52.632 57 27 0 11 67 9 65 1.15e-14 65.9
MS.gene27866.t1 MTR_2g085280 52.632 57 27 0 11 67 9 65 1.21e-14 65.5
MS.gene27866.t1 MTR_4g108720 52.830 53 25 0 10 62 1 53 1.37e-14 66.2
MS.gene27866.t1 MTR_5g053390 51.724 58 28 0 11 68 9 66 2.93e-14 64.7
MS.gene27866.t1 MTR_7g028448 56.452 62 27 0 3 64 4 65 4.10e-14 63.2
MS.gene27866.t1 MTR_4g036915 56.452 62 27 0 3 64 4 65 4.10e-14 63.2
MS.gene27866.t1 MTR_5g055100 52.632 57 27 0 11 67 9 65 6.12e-14 63.9
MS.gene27866.t1 MTR_4g094632 45.763 59 32 0 10 68 1 59 1.20e-13 61.6
MS.gene27866.t1 MTR_0121s0080 47.619 63 31 1 8 68 4 66 1.66e-13 62.8
MS.gene27866.t1 MTR_3g080940 45.763 59 32 0 10 68 8 66 2.83e-13 61.6
MS.gene27866.t1 MTR_4g094638 44.068 59 33 0 10 68 1 59 6.14e-13 60.1
MS.gene27866.t1 MTR_8g046350 45.763 59 32 0 10 68 1 59 7.10e-13 59.7
MS.gene27866.t1 MTR_3g030780 46.552 58 31 0 11 68 9 66 7.51e-13 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27866.t1 AT3G58780 88.235 68 8 0 3 70 9 76 9.82e-39 128
MS.gene27866.t1 AT2G42830 96.721 61 2 0 9 69 15 75 6.26e-38 126
MS.gene27866.t1 AT3G58780 88.060 67 8 0 3 69 9 75 6.47e-38 126
MS.gene27866.t1 AT2G42830 96.721 61 2 0 9 69 15 75 6.79e-38 126
MS.gene27866.t1 AT3G58780 88.060 67 8 0 3 69 15 81 7.82e-38 126
MS.gene27866.t1 AT3G58780 88.060 67 8 0 3 69 9 75 1.20e-37 126
MS.gene27866.t1 AT3G58780 88.060 67 8 0 3 69 9 75 1.27e-37 126
MS.gene27866.t1 AT4G09960 93.651 63 4 0 7 69 24 86 2.08e-37 125
MS.gene27866.t1 AT4G09960 96.667 60 2 0 10 69 1 60 2.33e-37 124
MS.gene27866.t1 AT4G09960 96.667 60 2 0 10 69 2 61 2.61e-37 124
MS.gene27866.t1 AT4G09960 96.667 60 2 0 10 69 1 60 2.77e-37 124
MS.gene27866.t1 AT4G09960 96.667 60 2 0 10 69 11 70 4.10e-37 124
MS.gene27866.t1 AT4G18960 89.552 67 7 0 3 69 10 76 7.52e-37 123
MS.gene27866.t1 AT4G09960 95.082 61 3 0 9 69 95 155 1.07e-36 125
MS.gene27866.t1 AT2G03710 75.000 60 15 0 10 69 1 60 2.34e-29 102
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 4.83e-29 101
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 4.83e-29 101
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 4.83e-29 101
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 6.49e-29 100
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 6.49e-29 100
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 6.49e-29 100
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 6.49e-29 100
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 6.49e-29 100
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 9.80e-29 99.0
MS.gene27866.t1 AT2G45650 77.966 59 13 0 10 68 1 59 1.52e-28 102
MS.gene27866.t1 AT1G24260 76.667 60 14 0 10 69 1 60 1.76e-28 101
MS.gene27866.t1 AT1G24260 76.667 60 14 0 10 69 1 60 2.29e-28 101
MS.gene27866.t1 AT1G24260 76.667 60 14 0 10 69 1 60 2.39e-28 101
MS.gene27866.t1 AT5G15800 76.667 60 14 0 10 69 1 60 2.75e-28 101
MS.gene27866.t1 AT3G02310 77.966 59 13 0 10 68 1 59 3.72e-28 100
MS.gene27866.t1 AT4G11880 77.586 58 13 0 12 69 3 60 4.08e-28 99.4
MS.gene27866.t1 AT4G11880 77.586 58 13 0 12 69 3 60 4.08e-28 99.4
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 5.02e-28 100
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 5.02e-28 100
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 5.02e-28 100
MS.gene27866.t1 AT5G15800 76.667 60 14 0 10 69 1 60 5.08e-28 101
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 5.27e-28 99.8
MS.gene27866.t1 AT5G62165 75.862 58 14 0 12 69 3 60 5.27e-28 99.8
MS.gene27866.t1 AT4G11880 77.586 58 13 0 12 69 3 60 8.90e-28 99.8
MS.gene27866.t1 AT4G11880 77.586 58 13 0 12 69 3 60 8.90e-28 99.8
MS.gene27866.t1 AT2G45660 74.138 58 15 0 12 69 3 60 1.45e-27 97.4
MS.gene27866.t1 AT3G61120 74.576 59 15 0 10 68 1 59 3.66e-27 98.6
MS.gene27866.t1 AT2G03710 75.000 60 15 0 10 69 1 60 4.44e-27 98.6
MS.gene27866.t1 AT4G22950 74.138 58 15 0 12 69 3 60 4.49e-27 96.7
MS.gene27866.t1 AT2G03710 75.000 60 15 0 10 69 1 60 4.53e-27 98.6
MS.gene27866.t1 AT5G60910 70.000 60 18 0 10 69 1 60 5.75e-27 98.2
MS.gene27866.t1 AT2G45660 74.138 58 15 0 12 69 3 60 6.09e-27 97.4
MS.gene27866.t1 AT3G02310 77.966 59 13 0 10 68 1 59 6.20e-27 98.2
MS.gene27866.t1 AT4G22950 74.138 58 15 0 12 69 3 60 1.61e-26 96.3
MS.gene27866.t1 AT4G22950 74.138 58 15 0 12 69 3 60 1.61e-26 96.3
MS.gene27866.t1 AT3G57230 68.333 60 19 0 10 69 1 60 2.43e-26 94.0
MS.gene27866.t1 AT5G13790 76.271 59 14 0 10 68 1 59 3.24e-26 96.7
MS.gene27866.t1 AT5G13790 76.271 59 14 0 10 68 1 59 3.31e-26 96.7
MS.gene27866.t1 AT5G51870 72.881 59 16 0 12 70 3 61 3.89e-26 94.0
MS.gene27866.t1 AT5G51860 72.414 58 16 0 12 69 3 60 4.19e-26 94.7
MS.gene27866.t1 AT5G51870 69.841 63 19 0 8 70 9 71 6.63e-26 95.1
MS.gene27866.t1 AT5G51860 72.414 58 16 0 12 69 3 60 6.94e-26 94.4
MS.gene27866.t1 AT5G51870 72.881 59 16 0 12 70 3 61 7.79e-26 94.4
MS.gene27866.t1 AT2G14210 70.000 60 18 0 10 69 1 60 9.10e-26 94.7
MS.gene27866.t1 AT1G69120 68.333 60 19 0 10 69 1 60 1.28e-25 94.7
MS.gene27866.t1 AT5G51870 72.881 59 16 0 12 70 26 84 1.33e-25 93.6
MS.gene27866.t1 AT2G14210 70.000 60 18 0 10 69 1 60 1.43e-25 94.4
MS.gene27866.t1 AT1G26310 71.186 59 17 0 10 68 1 59 1.54e-25 94.7
MS.gene27866.t1 AT5G51870 72.881 59 16 0 12 70 3 61 1.93e-25 93.6
MS.gene27866.t1 AT3G57390 67.797 59 19 0 10 68 1 59 2.95e-25 93.2
MS.gene27866.t1 AT3G57390 67.797 59 19 0 10 68 1 59 6.20e-25 93.2
MS.gene27866.t1 AT1G71692 67.241 58 19 0 10 67 1 58 6.16e-24 89.4
MS.gene27866.t1 AT4G37940 63.333 60 22 0 10 69 1 60 9.65e-24 88.2
MS.gene27866.t1 AT3G57230 68.333 60 19 0 10 69 1 60 1.23e-23 89.4
MS.gene27866.t1 AT3G57230 68.333 60 19 0 10 69 1 60 1.23e-23 89.4
MS.gene27866.t1 AT3G54340 68.421 57 18 0 10 66 1 57 1.35e-23 89.0
MS.gene27866.t1 AT5G20240 68.421 57 18 0 10 66 1 57 1.51e-23 87.0
MS.gene27866.t1 AT3G30260 67.241 58 19 0 10 67 1 58 1.56e-23 89.4
MS.gene27866.t1 AT5G20240 68.421 57 18 0 10 66 1 57 2.12e-23 88.2
MS.gene27866.t1 AT5G65070 62.712 59 22 0 10 68 1 59 3.70e-23 85.9
MS.gene27866.t1 AT5G65070 62.712 59 22 0 10 68 1 59 4.32e-23 87.0
MS.gene27866.t1 AT1G69120 68.333 60 19 0 10 69 1 60 4.35e-23 87.8
MS.gene27866.t1 AT5G65070 62.712 59 22 0 10 68 1 59 1.17e-22 86.3
MS.gene27866.t1 AT5G65070 62.712 59 22 0 10 68 1 59 1.17e-22 86.7
MS.gene27866.t1 AT5G10140 64.407 59 21 0 10 68 1 59 1.49e-22 84.7
MS.gene27866.t1 AT5G65070 62.712 59 22 0 10 68 1 59 1.71e-22 86.3
MS.gene27866.t1 AT5G10140 64.407 59 21 0 10 68 1 59 1.75e-22 85.1
MS.gene27866.t1 AT5G10140 64.407 59 21 0 10 68 1 59 2.13e-22 85.1
MS.gene27866.t1 AT1G22130 75.926 54 13 0 10 63 1 54 2.25e-22 87.8
MS.gene27866.t1 AT5G10140 64.407 59 21 0 10 68 1 59 2.72e-22 84.7
MS.gene27866.t1 AT1G77980 74.074 54 14 0 10 63 1 54 5.99e-22 86.3
MS.gene27866.t1 AT4G24540 62.295 61 23 0 10 70 1 61 1.17e-21 84.0
MS.gene27866.t1 AT2G22630 60.000 60 24 0 10 69 1 60 2.18e-21 83.2
MS.gene27866.t1 AT2G22630 60.000 60 24 0 10 69 1 60 2.18e-21 83.2
MS.gene27866.t1 AT4G37940 63.333 60 22 0 10 69 1 60 8.03e-21 81.6
MS.gene27866.t1 AT5G23260 63.934 61 22 0 10 70 1 61 8.95e-21 82.0
MS.gene27866.t1 AT4G37940 63.333 60 22 0 10 69 1 60 1.08e-20 81.6
MS.gene27866.t1 AT5G23260 63.934 61 22 0 10 70 1 61 2.01e-20 81.3
MS.gene27866.t1 AT5G23260 60.000 65 26 0 6 70 13 77 2.71e-20 80.9
MS.gene27866.t1 AT5G23260 60.000 65 26 0 6 70 13 77 2.91e-20 80.9
MS.gene27866.t1 AT5G65050 57.627 59 25 0 10 68 1 59 4.08e-20 79.0
MS.gene27866.t1 AT5G65080 57.627 59 25 0 10 68 8 66 4.27e-20 79.0
MS.gene27866.t1 AT5G65080 61.818 55 21 0 10 64 8 62 8.28e-20 78.6
MS.gene27866.t1 AT5G65050 57.627 59 25 0 10 68 1 59 9.85e-20 78.2
MS.gene27866.t1 AT5G65050 57.627 59 25 0 10 68 1 59 1.07e-19 77.8
MS.gene27866.t1 AT5G65050 57.627 59 25 0 10 68 1 59 1.21e-19 78.2
MS.gene27866.t1 AT1G77950 62.963 54 20 0 10 63 1 54 4.44e-19 77.8
MS.gene27866.t1 AT1G77950 62.963 54 20 0 10 63 1 54 4.44e-19 77.8
MS.gene27866.t1 AT1G77950 62.963 54 20 0 10 63 1 54 4.44e-19 77.8
MS.gene27866.t1 AT1G77950 62.963 54 20 0 10 63 1 54 4.44e-19 77.8
MS.gene27866.t1 AT2G22540 61.667 60 23 0 10 69 1 60 6.30e-19 77.0
MS.gene27866.t1 AT2G22540 61.667 60 23 0 10 69 1 60 6.30e-19 77.0
MS.gene27866.t1 AT5G65060 54.237 59 27 0 10 68 1 59 2.19e-18 74.7
MS.gene27866.t1 AT5G65060 54.237 59 27 0 10 68 1 59 2.21e-18 74.7
MS.gene27866.t1 AT5G65060 54.237 59 27 0 10 68 1 59 2.30e-18 74.7
MS.gene27866.t1 AT2G22540 64.286 56 20 0 10 65 1 56 7.26e-18 74.3
MS.gene27866.t1 AT1G18750 60.377 53 21 0 10 62 1 53 1.55e-17 74.7
MS.gene27866.t1 AT1G18750 60.377 53 21 0 10 62 1 53 1.69e-17 74.7
MS.gene27866.t1 AT1G18750 60.377 53 21 0 10 62 1 53 1.76e-17 74.7
MS.gene27866.t1 AT4G37435 58.065 62 25 1 10 70 1 62 3.80e-17 71.2
MS.gene27866.t1 AT1G72350 60.345 58 23 0 11 68 43 100 3.28e-16 69.7
MS.gene27866.t1 AT1G31140 56.897 58 25 0 12 69 3 60 3.37e-16 69.3
MS.gene27866.t1 AT1G31140 56.897 58 25 0 12 69 3 60 3.48e-16 69.3
MS.gene27866.t1 AT1G01530 53.226 62 29 0 7 68 3 64 3.72e-16 69.7
MS.gene27866.t1 AT2G03060 56.604 53 23 0 10 62 1 53 1.69e-15 68.9
MS.gene27866.t1 AT2G03060 56.604 53 23 0 10 62 1 53 1.69e-15 68.9
MS.gene27866.t1 AT2G03060 56.604 53 23 0 10 62 1 53 1.69e-15 68.9
MS.gene27866.t1 AT1G77080 59.322 59 24 0 10 68 1 59 1.70e-15 67.0
MS.gene27866.t1 AT1G77080 59.322 59 24 0 10 68 1 59 1.90e-15 66.6
MS.gene27866.t1 AT1G77080 59.322 59 24 0 10 68 1 59 2.00e-15 66.2
MS.gene27866.t1 AT2G03060 56.604 53 23 0 10 62 1 53 2.15e-15 68.9
MS.gene27866.t1 AT1G77080 59.322 59 24 0 10 68 1 59 3.10e-15 66.6
MS.gene27866.t1 AT1G77080 59.322 59 24 0 10 68 1 59 4.04e-15 66.2
MS.gene27866.t1 AT1G77080 59.322 59 24 0 10 68 1 59 7.64e-15 65.9
MS.gene27866.t1 AT2G34440 48.276 58 30 0 10 67 1 58 8.21e-15 65.1
MS.gene27866.t1 AT3G66656 48.276 58 30 0 10 67 1 58 1.25e-14 64.7
MS.gene27866.t1 AT4G36590 53.226 62 29 0 7 68 3 64 2.37e-14 65.1
MS.gene27866.t1 AT1G65360 47.458 59 31 0 10 68 6 64 3.33e-14 64.3
MS.gene27866.t1 AT1G69540 50.943 53 26 0 10 62 1 53 4.01e-14 65.1
MS.gene27866.t1 AT1G69540 50.943 53 26 0 10 62 1 53 6.00e-14 64.7
MS.gene27866.t1 AT5G60440 51.724 58 28 0 11 68 7 64 9.54e-14 63.9
MS.gene27866.t1 AT3G04100 44.828 58 32 0 11 68 14 71 1.09e-13 62.8
MS.gene27866.t1 AT1G47760 50.000 58 29 0 10 67 1 58 5.47e-13 60.5
MS.gene27866.t1 AT2G24840 49.153 59 30 0 10 68 62 120 1.90e-12 60.1
MS.gene27866.t1 AT1G28460 46.154 65 34 1 4 68 2 65 5.55e-12 57.8
MS.gene27866.t1 AT1G29962 45.312 64 34 1 5 68 3 65 7.70e-12 57.4
MS.gene27866.t1 AT2G26320 41.538 65 29 1 10 65 17 81 6.01e-11 53.5

Find 15 sgRNAs with CRISPR-Local

Find 14 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTCTCTGTGGAGAATC+TGG 0.328673 4.1:+12834541 None:intergenic
TACGCTTGCAGAACGTAACT+TGG 0.393351 4.1:+12834467 None:intergenic
TCTATGAATATGCAAATAAC+AGG 0.399842 4.1:-12834357 MS.gene27866:CDS
TCTCCACAGAGAGGAAAGAT+TGG 0.413834 4.1:-12834535 MS.gene27866:CDS
ACGTTCTGCAAGCGTAGAAA+TGG 0.436492 4.1:-12834460 MS.gene27866:CDS
GAGGGAAGATTGAGATCAAG+AGG 0.473526 4.1:-12834510 MS.gene27866:CDS
TGTTATTTGCATATTCATAG+AGG 0.513447 4.1:+12834359 None:intergenic
CTTCCAATCTTTCCTCTCTG+TGG 0.527926 4.1:+12834532 None:intergenic
CAGAGAGGAAAGATTGGAAG+AGG 0.534117 4.1:-12834529 MS.gene27866:CDS
TAGAAATGGCTTGCTTAAGA+AGG 0.548047 4.1:-12834446 MS.gene27866:CDS
TCTCTGTGGAGAATCTGGCA+TGG 0.559976 4.1:+12834546 None:intergenic
AGAGAGGAAAGATTGGAAGA+GGG 0.620712 4.1:-12834528 MS.gene27866:CDS
TATTTGCATATTCATAGAGG+CGG 0.665450 4.1:+12834362 None:intergenic
CTTATAGTCTTCTCGACTCG+CGG 0.668074 4.1:-12834385 MS.gene27866:CDS
ATGCCAGATTCTCCACAGAG+AGG 0.715813 4.1:-12834544 MS.gene27866:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCTATGAATATGCAAATAAC+AGG - chr4.1:12834541-12834560 MS.gene27866:CDS 25.0%
!! TGTTATTTGCATATTCATAG+AGG + chr4.1:12834542-12834561 None:intergenic 25.0%
TATTTGCATATTCATAGAGG+CGG + chr4.1:12834539-12834558 None:intergenic 30.0%
!! TAGAAATGGCTTGCTTAAGA+AGG - chr4.1:12834452-12834471 MS.gene27866:CDS 35.0%
AGAGAGGAAAGATTGGAAGA+GGG - chr4.1:12834370-12834389 MS.gene27866:CDS 40.0%
ACGTTCTGCAAGCGTAGAAA+TGG - chr4.1:12834438-12834457 MS.gene27866:CDS 45.0%
CAGAGAGGAAAGATTGGAAG+AGG - chr4.1:12834369-12834388 MS.gene27866:CDS 45.0%
CTTCCAATCTTTCCTCTCTG+TGG + chr4.1:12834369-12834388 None:intergenic 45.0%
GAGGGAAGATTGAGATCAAG+AGG - chr4.1:12834388-12834407 MS.gene27866:CDS 45.0%
TACGCTTGCAGAACGTAACT+TGG + chr4.1:12834434-12834453 None:intergenic 45.0%
TCTCCACAGAGAGGAAAGAT+TGG - chr4.1:12834363-12834382 MS.gene27866:CDS 45.0%
TTTCCTCTCTGTGGAGAATC+TGG + chr4.1:12834360-12834379 None:intergenic 45.0%
! CTTATAGTCTTCTCGACTCG+CGG - chr4.1:12834513-12834532 MS.gene27866:CDS 45.0%
ATGCCAGATTCTCCACAGAG+AGG - chr4.1:12834354-12834373 MS.gene27866:CDS 50.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 12834354 12834566 12834354 ID=MS.gene27866
chr4.1 mRNA 12834354 12834566 12834354 ID=MS.gene27866.t1;Parent=MS.gene27866
chr4.1 exon 12834354 12834566 12834354 ID=MS.gene27866.t1.exon1;Parent=MS.gene27866.t1
chr4.1 CDS 12834354 12834566 12834354 ID=cds.MS.gene27866.t1;Parent=MS.gene27866.t1
Gene Sequence

>MS.gene27866

ATGCCAGATTCTCCACAGAGAGGAAAGATTGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACAACGAATCGCCAAGTTACGTTCTGCAAGCGTAGAAATGGCTTGCTTAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTTATAGTCTTCTCGACTCGCGGCCGCCTCTATGAATATGCAAATAACAGGTAA
Protein sequence

>MS.gene27866.t1

MPDSPQRGKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNR