Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28102.t1 | XP_003630065.2 | 91.5 | 458 | 25 | 2 | 1 | 457 | 1 | 445 | 6.50E-237 | 829.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28102.t1 | Q9LX16 | 48.0 | 435 | 199 | 8 | 2 | 430 | 4 | 417 | 5.5e-99 | 362.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28102.t1 | G7LAE2 | 91.5 | 458 | 25 | 2 | 1 | 457 | 1 | 445 | 4.7e-237 | 829.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28102.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28102.t1 | MTR_8g091370 | 91.485 | 458 | 25 | 2 | 1 | 457 | 1 | 445 | 0.0 | 791 |
| MS.gene28102.t1 | MTR_3g087530 | 50.638 | 470 | 170 | 9 | 1 | 456 | 1 | 422 | 6.79e-145 | 421 |
| MS.gene28102.t1 | MTR_5g087790 | 45.700 | 407 | 164 | 9 | 12 | 365 | 40 | 442 | 1.07e-114 | 350 |
| MS.gene28102.t1 | MTR_3g078770 | 46.787 | 389 | 144 | 8 | 22 | 355 | 53 | 433 | 4.08e-113 | 346 |
| MS.gene28102.t1 | MTR_2g098470 | 55.435 | 276 | 101 | 6 | 7 | 271 | 24 | 288 | 2.08e-96 | 303 |
| MS.gene28102.t1 | MTR_6g460640 | 47.876 | 259 | 130 | 3 | 12 | 270 | 34 | 287 | 1.27e-83 | 270 |
| MS.gene28102.t1 | MTR_6g060600 | 47.490 | 259 | 131 | 3 | 12 | 270 | 34 | 287 | 7.29e-83 | 268 |
| MS.gene28102.t1 | MTR_3g010790 | 46.124 | 258 | 119 | 6 | 72 | 326 | 1 | 241 | 6.92e-72 | 236 |
| MS.gene28102.t1 | MTR_1g024420 | 41.121 | 107 | 52 | 2 | 15 | 113 | 4 | 107 | 1.68e-21 | 89.7 |
| MS.gene28102.t1 | MTR_7g095580 | 45.312 | 64 | 35 | 0 | 61 | 124 | 1 | 64 | 1.11e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28102.t1 | AT5G10120 | 47.107 | 484 | 198 | 12 | 2 | 454 | 4 | 460 | 2.46e-134 | 395 |
| MS.gene28102.t1 | AT5G65100 | 43.470 | 536 | 189 | 13 | 13 | 454 | 30 | 545 | 2.08e-128 | 383 |
| MS.gene28102.t1 | AT3G20770 | 47.368 | 399 | 156 | 9 | 4 | 355 | 36 | 427 | 4.51e-115 | 351 |
| MS.gene28102.t1 | AT2G27050 | 45.192 | 416 | 166 | 10 | 8 | 364 | 36 | 448 | 1.10e-113 | 346 |
| MS.gene28102.t1 | AT1G73730 | 47.812 | 320 | 145 | 5 | 5 | 319 | 10 | 312 | 1.53e-98 | 306 |
| MS.gene28102.t1 | AT1G73730 | 47.812 | 320 | 145 | 5 | 5 | 319 | 22 | 324 | 1.77e-98 | 306 |
| MS.gene28102.t1 | AT5G21120 | 39.418 | 378 | 180 | 9 | 25 | 362 | 52 | 420 | 1.49e-80 | 259 |
| MS.gene28102.t1 | AT5G21120 | 39.418 | 378 | 180 | 9 | 25 | 362 | 52 | 420 | 1.49e-80 | 259 |
| MS.gene28102.t1 | AT5G21120 | 39.788 | 377 | 180 | 9 | 25 | 362 | 59 | 427 | 2.20e-80 | 258 |
Find 78 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGATTCCCTCTTGAAAT+AGG | 0.165470 | 4.4:-10159604 | MS.gene28102:CDS |
| GTCATGAAGCAACCTCAATT+TGG | 0.212001 | 4.4:-10158787 | MS.gene28102:CDS |
| GATGAAGCAAAGCTTGTTCT+TGG | 0.284476 | 4.4:+10159326 | None:intergenic |
| CTTTCTGAAGAACCTGTTAC+TGG | 0.287865 | 4.4:+10159838 | None:intergenic |
| GAGTGATGATGGTAAGTATT+TGG | 0.293761 | 4.4:+10159756 | None:intergenic |
| GTCAGATGATTGGTTGGATA+TGG | 0.302903 | 4.4:-10159020 | MS.gene28102:CDS |
| AAAACCTCATGACTTGAAAA+AGG | 0.303963 | 4.4:-10159491 | MS.gene28102:CDS |
| TAGAAGATTATGGTAGCTTT+TGG | 0.306758 | 4.4:-10158907 | MS.gene28102:CDS |
| GCTCCTCCTTGGTGGCCTAA+TGG | 0.325481 | 4.4:-10159577 | MS.gene28102:CDS |
| TACATGCATATATGATGAAA+TGG | 0.334436 | 4.4:+10159699 | None:intergenic |
| GACTTGCAAGATACTACTTT+AGG | 0.357446 | 4.4:-10159670 | MS.gene28102:CDS |
| TTGCCTTGAGCTTCTGTAGC+AGG | 0.371041 | 4.4:+10160025 | None:intergenic |
| GAAGATTCCCTCTTGAAATA+GGG | 0.378857 | 4.4:-10159603 | MS.gene28102:CDS |
| CTTCAGAAAGCTTGCGTGAA+TGG | 0.389051 | 4.4:-10159825 | MS.gene28102:CDS |
| TGAGCTTCTGTAGCAGGATT+CGG | 0.390190 | 4.4:+10160031 | None:intergenic |
| TCATGAAGCAACCTCAATTT+GGG | 0.408798 | 4.4:-10158786 | MS.gene28102:CDS |
| GGATAATGATAAACAGAATC+AGG | 0.412528 | 4.4:-10158987 | MS.gene28102:CDS |
| CTGATGTTGATAAAGTTAGA+AGG | 0.416794 | 4.4:-10159423 | MS.gene28102:CDS |
| GATATGACAGTAGAAGATTA+TGG | 0.417711 | 4.4:-10158917 | MS.gene28102:CDS |
| GAGAATGGAAAACCAGTAAC+AGG | 0.420883 | 4.4:-10159850 | MS.gene28102:CDS |
| TGTAAGAACAGAGTGATTCA+TGG | 0.427384 | 4.4:+10159080 | None:intergenic |
| AAATAGGGTTGGCTCCTCCT+TGG | 0.438438 | 4.4:-10159588 | MS.gene28102:CDS |
| CACCACTGTTCTGTTCCATT+AGG | 0.438620 | 4.4:+10159562 | None:intergenic |
| CTTCTAACTTTATCAACATC+AGG | 0.442768 | 4.4:+10159424 | None:intergenic |
| GTTGCACATGGGAGTGGACT+TGG | 0.444199 | 4.4:-10158861 | MS.gene28102:CDS |
| TATGGTATTGTCCCAGAGAA+TGG | 0.446501 | 4.4:-10159865 | MS.gene28102:CDS |
| TTGTTCTTGGTTCATTACTT+TGG | 0.448117 | 4.4:+10159339 | None:intergenic |
| CCCATGCACGAATCACTTTG+TGG | 0.451226 | 4.4:+10159130 | None:intergenic |
| CACCTTCTTCTGATATCTTG+AGG | 0.458091 | 4.4:+10159290 | None:intergenic |
| CTTTGAAAATCAACAAGAGT+TGG | 0.471200 | 4.4:-10159734 | MS.gene28102:CDS |
| TCAAGAGGGAATCTTCTTTG+TGG | 0.478086 | 4.4:+10159610 | None:intergenic |
| TAGGGTTGGCTCCTCCTTGG+TGG | 0.481325 | 4.4:-10159585 | MS.gene28102:CDS |
| CTACAGAAGCTCAAGGCAAA+AGG | 0.492360 | 4.4:-10160021 | MS.gene28102:CDS |
| ACATGCATATATGATGAAAT+GGG | 0.493235 | 4.4:+10159700 | None:intergenic |
| TCTTGAGTTGCACATGGGAG+TGG | 0.500811 | 4.4:-10158867 | MS.gene28102:CDS |
| TGGTTGGATATGGATATAGC+AGG | 0.505552 | 4.4:-10159010 | MS.gene28102:CDS |
| GGTTGGATATGGATATAGCA+GGG | 0.510862 | 4.4:-10159009 | MS.gene28102:CDS |
| AATCATCTGACAGAAAATCA+TGG | 0.519514 | 4.4:+10159032 | None:intergenic |
| TAATGAGTCGAGAGAGATTG+TGG | 0.524973 | 4.4:-10158939 | MS.gene28102:CDS |
| GCTGAAGAAGCGCATGTGGA+AGG | 0.531952 | 4.4:-10160055 | MS.gene28102:CDS |
| CCACAAAGTGATTCGTGCAT+GGG | 0.534919 | 4.4:-10159130 | MS.gene28102:CDS |
| GGCTTGGAAAGTTTCTGTGT+TGG | 0.536507 | 4.4:-10159470 | MS.gene28102:CDS |
| TCCACAAAGTGATTCGTGCA+TGG | 0.536930 | 4.4:-10159131 | MS.gene28102:CDS |
| CAGCTAAAGATAGTGCAACT+TGG | 0.538503 | 4.4:-10159363 | MS.gene28102:CDS |
| TCGTAGCACTGAGAAGAGAA+AGG | 0.545622 | 4.4:-10159221 | MS.gene28102:CDS |
| ATCTGACAGAAAATCATGGA+AGG | 0.555309 | 4.4:+10159036 | None:intergenic |
| ATATGTCAAGTCCCAAATTG+AGG | 0.558592 | 4.4:+10158775 | None:intergenic |
| CAAAAGATGAAGCATCAAGA+AGG | 0.559303 | 4.4:-10159969 | MS.gene28102:CDS |
| CGTAGCACTGAGAAGAGAAA+GGG | 0.563011 | 4.4:-10159220 | MS.gene28102:CDS |
| AGAGGGAATCTTCTTTGTGG+TGG | 0.566976 | 4.4:+10159613 | None:intergenic |
| ATTCCCTCTTGAAATAGGGT+TGG | 0.570741 | 4.4:-10159599 | MS.gene28102:CDS |
| TAATGGAACAGAACAGTGGT+GGG | 0.582068 | 4.4:-10159560 | MS.gene28102:CDS |
| TGCCTCAAGATATCAGAAGA+AGG | 0.584848 | 4.4:-10159292 | MS.gene28102:CDS |
| ATGACAATATGCAAAGCTCA+AGG | 0.586274 | 4.4:-10159895 | MS.gene28102:CDS |
| CAGAAAGCTTGCGTGAATGG+TGG | 0.590210 | 4.4:-10159822 | MS.gene28102:CDS |
| TAAACATGAGTTGAATCACT+TGG | 0.592672 | 4.4:-10159251 | MS.gene28102:CDS |
| CTCATGTTTAGTACTACTAG+AGG | 0.600907 | 4.4:+10159264 | None:intergenic |
| GCAAGATCTTGAGTTGCACA+TGG | 0.607900 | 4.4:-10158873 | MS.gene28102:CDS |
| GGTTGCTTCATGACTTAATG+CGG | 0.616145 | 4.4:+10158796 | None:intergenic |
| ACGAGCTGAAGAAGCGCATG+TGG | 0.617162 | 4.4:-10160059 | MS.gene28102:CDS |
| CTAATGGAACAGAACAGTGG+TGG | 0.623346 | 4.4:-10159561 | MS.gene28102:CDS |
| GGTAAGTATTTGGAAACTGC+AGG | 0.623672 | 4.4:+10159766 | None:intergenic |
| TCTGACAGAAAATCATGGAA+GGG | 0.626048 | 4.4:+10159037 | None:intergenic |
| GAACAGTGGTGGGGTCAACA+AGG | 0.627644 | 4.4:-10159550 | MS.gene28102:CDS |
| TGTTCTTACAGAACAGAACA+AGG | 0.627946 | 4.4:-10159067 | MS.gene28102:CDS |
| GGAGCCAACCCTATTTCAAG+AGG | 0.632337 | 4.4:+10159595 | None:intergenic |
| GTTGGATATGGATATAGCAG+GGG | 0.659457 | 4.4:-10159008 | MS.gene28102:CDS |
| AATCCTGCTACAGAAGCTCA+AGG | 0.664522 | 4.4:-10160028 | MS.gene28102:CDS |
| CAAGATCTTGAGTTGCACAT+GGG | 0.666843 | 4.4:-10158872 | MS.gene28102:CDS |
| TCTGTTCCATTAGGCCACCA+AGG | 0.667706 | 4.4:+10159571 | None:intergenic |
| AATGGAACAGAACAGTGGTG+GGG | 0.686244 | 4.4:-10159559 | MS.gene28102:CDS |
| CAGTGGTGGGGTCAACAAGG+TGG | 0.693074 | 4.4:-10159547 | MS.gene28102:CDS |
| GGACTTGGAAAGAGATAACG+TGG | 0.694124 | 4.4:-10158846 | MS.gene28102:CDS |
| GAGCCAACCCTATTTCAAGA+GGG | 0.695972 | 4.4:+10159596 | None:intergenic |
| GGTGGTTTGTCAGAACAACA+TGG | 0.708986 | 4.4:-10159529 | MS.gene28102:CDS |
| GTTCCATTAGGCCACCAAGG+AGG | 0.736302 | 4.4:+10159574 | None:intergenic |
| AAGTATTTGGAAACTGCAGG+TGG | 0.764249 | 4.4:+10159769 | None:intergenic |
| GGCCTAATGGAACAGAACAG+TGG | 0.776858 | 4.4:-10159564 | MS.gene28102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACATGCATATATGATGAAAT+GGG | + | chr4.4:10159192-10159211 | None:intergenic | 25.0% |
| ! | TACATGCATATATGATGAAA+TGG | + | chr4.4:10159193-10159212 | None:intergenic | 25.0% |
| !! | ATTTTCAGACAAAAGTTCAA+GGG | - | chr4.4:10159782-10159801 | MS.gene28102:CDS | 25.0% |
| !!! | AAGTCATGAGGTTTTTTATA+AGG | + | chr4.4:10159393-10159412 | None:intergenic | 25.0% |
| !!! | TGCTGATTTTGATTTTGATA+AGG | - | chr4.4:10159707-10159726 | MS.gene28102:CDS | 25.0% |
| AAAACCTCATGACTTGAAAA+AGG | - | chr4.4:10159398-10159417 | MS.gene28102:CDS | 30.0% | |
| AATCATCTGACAGAAAATCA+TGG | + | chr4.4:10159860-10159879 | None:intergenic | 30.0% | |
| CTTCTAACTTTATCAACATC+AGG | + | chr4.4:10159468-10159487 | None:intergenic | 30.0% | |
| GATATGACAGTAGAAGATTA+TGG | - | chr4.4:10159972-10159991 | MS.gene28102:CDS | 30.0% | |
| GGATAATGATAAACAGAATC+AGG | - | chr4.4:10159902-10159921 | MS.gene28102:CDS | 30.0% | |
| TTGTTCTTGGTTCATTACTT+TGG | + | chr4.4:10159553-10159572 | None:intergenic | 30.0% | |
| ! | ATGATTTTCTGTCAGATGAT+TGG | - | chr4.4:10159859-10159878 | MS.gene28102:CDS | 30.0% |
| ! | CTGATGTTGATAAAGTTAGA+AGG | - | chr4.4:10159466-10159485 | MS.gene28102:CDS | 30.0% |
| ! | CTTTGAAAATCAACAAGAGT+TGG | - | chr4.4:10159155-10159174 | MS.gene28102:CDS | 30.0% |
| ! | GATTTTCAGACAAAAGTTCA+AGG | - | chr4.4:10159781-10159800 | MS.gene28102:CDS | 30.0% |
| ! | TAAACATGAGTTGAATCACT+TGG | - | chr4.4:10159638-10159657 | MS.gene28102:CDS | 30.0% |
| ! | TAGAAGATTATGGTAGCTTT+TGG | - | chr4.4:10159982-10160001 | MS.gene28102:CDS | 30.0% |
| ! | TGATTTTCAAAGAGTGATGA+TGG | + | chr4.4:10159147-10159166 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTTGTCGATCAA+AGG | + | chr4.4:10158800-10158819 | None:intergenic | 30.0% |
| !!! | AAAGCTCAAGGTTTTGTTTA+TGG | - | chr4.4:10159006-10159025 | MS.gene28102:CDS | 30.0% |
| !!! | TCATGAGGTTTTTTATAAGG+CGG | + | chr4.4:10159390-10159409 | None:intergenic | 30.0% |
| AGAAGATTCCCTCTTGAAAT+AGG | - | chr4.4:10159285-10159304 | MS.gene28102:CDS | 35.0% | |
| ATATGTCAAGTCCCAAATTG+AGG | + | chr4.4:10160117-10160136 | None:intergenic | 35.0% | |
| ATCTGACAGAAAATCATGGA+AGG | + | chr4.4:10159856-10159875 | None:intergenic | 35.0% | |
| ATGACAATATGCAAAGCTCA+AGG | - | chr4.4:10158994-10159013 | MS.gene28102:CDS | 35.0% | |
| CTCATGTTTAGTACTACTAG+AGG | + | chr4.4:10159628-10159647 | None:intergenic | 35.0% | |
| GAAGATTCCCTCTTGAAATA+GGG | - | chr4.4:10159286-10159305 | MS.gene28102:CDS | 35.0% | |
| GACTTGCAAGATACTACTTT+AGG | - | chr4.4:10159219-10159238 | MS.gene28102:CDS | 35.0% | |
| TCATGAAGCAACCTCAATTT+GGG | - | chr4.4:10160103-10160122 | MS.gene28102:CDS | 35.0% | |
| TCTGACAGAAAATCATGGAA+GGG | + | chr4.4:10159855-10159874 | None:intergenic | 35.0% | |
| TGTAAGAACAGAGTGATTCA+TGG | + | chr4.4:10159812-10159831 | None:intergenic | 35.0% | |
| TGTTCTTACAGAACAGAACA+AGG | - | chr4.4:10159822-10159841 | MS.gene28102:CDS | 35.0% | |
| ! | ATGCTTCATCTTTTGCTTGT+TGG | + | chr4.4:10158915-10158934 | None:intergenic | 35.0% |
| ! | CAAAAGATGAAGCATCAAGA+AGG | - | chr4.4:10158920-10158939 | MS.gene28102:CDS | 35.0% |
| ! | TTTTCTGTCAGATGATTGGT+TGG | - | chr4.4:10159863-10159882 | MS.gene28102:CDS | 35.0% |
| !! | GAGTGATGATGGTAAGTATT+TGG | + | chr4.4:10159136-10159155 | None:intergenic | 35.0% |
| !!! | TTACTGGTTTTCCATTCTCT+GGG | + | chr4.4:10159038-10159057 | None:intergenic | 35.0% |
| AAGTATTTGGAAACTGCAGG+TGG | + | chr4.4:10159123-10159142 | None:intergenic | 40.0% | |
| ATTCCCTCTTGAAATAGGGT+TGG | - | chr4.4:10159290-10159309 | MS.gene28102:CDS | 40.0% | |
| CACCTTCTTCTGATATCTTG+AGG | + | chr4.4:10159602-10159621 | None:intergenic | 40.0% | |
| CAGCTAAAGATAGTGCAACT+TGG | - | chr4.4:10159526-10159545 | MS.gene28102:CDS | 40.0% | |
| CTCATGACTTGAAAAAGGCT+TGG | - | chr4.4:10159403-10159422 | MS.gene28102:CDS | 40.0% | |
| GAGAATGGAAAACCAGTAAC+AGG | - | chr4.4:10159039-10159058 | MS.gene28102:CDS | 40.0% | |
| GGTAAGTATTTGGAAACTGC+AGG | + | chr4.4:10159126-10159145 | None:intergenic | 40.0% | |
| GGTTGCTTCATGACTTAATG+CGG | + | chr4.4:10160096-10160115 | None:intergenic | 40.0% | |
| GGTTGGATATGGATATAGCA+GGG | - | chr4.4:10159880-10159899 | MS.gene28102:CDS | 40.0% | |
| GTCATGAAGCAACCTCAATT+TGG | - | chr4.4:10160102-10160121 | MS.gene28102:CDS | 40.0% | |
| GTTGGATATGGATATAGCAG+GGG | - | chr4.4:10159881-10159900 | MS.gene28102:CDS | 40.0% | |
| TAATGAGTCGAGAGAGATTG+TGG | - | chr4.4:10159950-10159969 | MS.gene28102:CDS | 40.0% | |
| TAATGGAACAGAACAGTGGT+GGG | - | chr4.4:10159329-10159348 | MS.gene28102:CDS | 40.0% | |
| TATGGTATTGTCCCAGAGAA+TGG | - | chr4.4:10159024-10159043 | MS.gene28102:CDS | 40.0% | |
| TCAAGAGGGAATCTTCTTTG+TGG | + | chr4.4:10159282-10159301 | None:intergenic | 40.0% | |
| TGCCTCAAGATATCAGAAGA+AGG | - | chr4.4:10159597-10159616 | MS.gene28102:CDS | 40.0% | |
| TGGTTGGATATGGATATAGC+AGG | - | chr4.4:10159879-10159898 | MS.gene28102:CDS | 40.0% | |
| ! | CAAGATCTTGAGTTGCACAT+GGG | - | chr4.4:10160017-10160036 | MS.gene28102:CDS | 40.0% |
| ! | CTTTCTGAAGAACCTGTTAC+TGG | + | chr4.4:10159054-10159073 | None:intergenic | 40.0% |
| ! | GATGAAGCAAAGCTTGTTCT+TGG | + | chr4.4:10159566-10159585 | None:intergenic | 40.0% |
| ! | GTCAGATGATTGGTTGGATA+TGG | - | chr4.4:10159869-10159888 | MS.gene28102:CDS | 40.0% |
| !!! | CAAGCCTTTTTCAAGTCATG+AGG | + | chr4.4:10159405-10159424 | None:intergenic | 40.0% |
| !!! | GAGGTTTTTTATAAGGCGGT+GGG | + | chr4.4:10159386-10159405 | None:intergenic | 40.0% |
| !!! | GTTACTGGTTTTCCATTCTC+TGG | + | chr4.4:10159039-10159058 | None:intergenic | 40.0% |
| !!! | TGAGGTTTTTTATAAGGCGG+TGG | + | chr4.4:10159387-10159406 | None:intergenic | 40.0% |
| AATCCTGCTACAGAAGCTCA+AGG | - | chr4.4:10158861-10158880 | MS.gene28102:CDS | 45.0% | |
| AATGGAACAGAACAGTGGTG+GGG | - | chr4.4:10159330-10159349 | MS.gene28102:CDS | 45.0% | |
| AGAGGGAATCTTCTTTGTGG+TGG | + | chr4.4:10159279-10159298 | None:intergenic | 45.0% | |
| CACCACTGTTCTGTTCCATT+AGG | + | chr4.4:10159330-10159349 | None:intergenic | 45.0% | |
| CCACAAAGTGATTCGTGCAT+GGG | - | chr4.4:10159759-10159778 | MS.gene28102:CDS | 45.0% | |
| CTAATGGAACAGAACAGTGG+TGG | - | chr4.4:10159328-10159347 | MS.gene28102:CDS | 45.0% | |
| CTACAGAAGCTCAAGGCAAA+AGG | - | chr4.4:10158868-10158887 | MS.gene28102:CDS | 45.0% | |
| CTTCAGAAAGCTTGCGTGAA+TGG | - | chr4.4:10159064-10159083 | MS.gene28102:CDS | 45.0% | |
| GAGCCAACCCTATTTCAAGA+GGG | + | chr4.4:10159296-10159315 | None:intergenic | 45.0% | |
| GGACTTGGAAAGAGATAACG+TGG | - | chr4.4:10160043-10160062 | MS.gene28102:CDS | 45.0% | |
| GGCTTGGAAAGTTTCTGTGT+TGG | - | chr4.4:10159419-10159438 | MS.gene28102:CDS | 45.0% | |
| TCCACAAAGTGATTCGTGCA+TGG | - | chr4.4:10159758-10159777 | MS.gene28102:CDS | 45.0% | |
| TGAGCTTCTGTAGCAGGATT+CGG | + | chr4.4:10158861-10158880 | None:intergenic | 45.0% | |
| ! | CGTAGCACTGAGAAGAGAAA+GGG | - | chr4.4:10159669-10159688 | MS.gene28102:CDS | 45.0% |
| ! | GCAAGATCTTGAGTTGCACA+TGG | - | chr4.4:10160016-10160035 | MS.gene28102:CDS | 45.0% |
| ! | GGTGGTTTGTCAGAACAACA+TGG | - | chr4.4:10159360-10159379 | MS.gene28102:CDS | 45.0% |
| ! | TCGTAGCACTGAGAAGAGAA+AGG | - | chr4.4:10159668-10159687 | MS.gene28102:CDS | 45.0% |
| CAGAAAGCTTGCGTGAATGG+TGG | - | chr4.4:10159067-10159086 | MS.gene28102:CDS | 50.0% | |
| CCCATGCACGAATCACTTTG+TGG | + | chr4.4:10159762-10159781 | None:intergenic | 50.0% | |
| GGAGCCAACCCTATTTCAAG+AGG | + | chr4.4:10159297-10159316 | None:intergenic | 50.0% | |
| GGCCTAATGGAACAGAACAG+TGG | - | chr4.4:10159325-10159344 | MS.gene28102:CDS | 50.0% | |
| TCTGTTCCATTAGGCCACCA+AGG | + | chr4.4:10159321-10159340 | None:intergenic | 50.0% | |
| TTGCCTTGAGCTTCTGTAGC+AGG | + | chr4.4:10158867-10158886 | None:intergenic | 50.0% | |
| ! | TCTTGAGTTGCACATGGGAG+TGG | - | chr4.4:10160022-10160041 | MS.gene28102:CDS | 50.0% |
| !! | AAATAGGGTTGGCTCCTCCT+TGG | - | chr4.4:10159301-10159320 | MS.gene28102:CDS | 50.0% |
| GTTCCATTAGGCCACCAAGG+AGG | + | chr4.4:10159318-10159337 | None:intergenic | 55.0% | |
| ! | ACGAGCTGAAGAAGCGCATG+TGG | - | chr4.4:10158830-10158849 | MS.gene28102:CDS | 55.0% |
| ! | GAACAGTGGTGGGGTCAACA+AGG | - | chr4.4:10159339-10159358 | MS.gene28102:CDS | 55.0% |
| ! | GCTGAAGAAGCGCATGTGGA+AGG | - | chr4.4:10158834-10158853 | MS.gene28102:CDS | 55.0% |
| ! | GTTGCACATGGGAGTGGACT+TGG | - | chr4.4:10160028-10160047 | MS.gene28102:CDS | 55.0% |
| ! | CAGTGGTGGGGTCAACAAGG+TGG | - | chr4.4:10159342-10159361 | MS.gene28102:CDS | 60.0% |
| ! | GCTCCTCCTTGGTGGCCTAA+TGG | - | chr4.4:10159312-10159331 | MS.gene28102:CDS | 60.0% |
| !! | TAGGGTTGGCTCCTCCTTGG+TGG | - | chr4.4:10159304-10159323 | MS.gene28102:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 10158769 | 10160142 | 10158769 | ID=MS.gene28102 |
| chr4.4 | mRNA | 10158769 | 10160142 | 10158769 | ID=MS.gene28102.t1;Parent=MS.gene28102 |
| chr4.4 | exon | 10158769 | 10160142 | 10158769 | ID=MS.gene28102.t1.exon1;Parent=MS.gene28102.t1 |
| chr4.4 | CDS | 10158769 | 10160142 | 10158769 | ID=cds.MS.gene28102.t1;Parent=MS.gene28102.t1 |
| Gene Sequence |
| Protein sequence |
