AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28280.t1 MTR_2g024380 82.372 312 28 1 249 533 159 470 0.0 538
MS.gene28280.t1 MTR_2g024380 78.333 240 36 3 1 239 1 225 1.22e-93 293
MS.gene28280.t1 MTR_2g024350 78.855 227 21 1 334 533 1 227 3.65e-126 368
MS.gene28280.t1 MTR_6g053200 40.193 311 143 5 259 533 233 536 5.35e-65 221
MS.gene28280.t1 MTR_6g053200 50.538 93 39 2 1 86 1 93 5.26e-14 75.1
MS.gene28280.t1 MTR_8g069935 38.158 304 98 4 260 533 220 463 6.80e-55 192
MS.gene28280.t1 MTR_8g069935 61.250 80 30 1 1 80 1 79 6.24e-14 74.3
MS.gene28280.t1 MTR_8g067650 38.730 315 119 7 264 532 233 519 4.45e-53 188
MS.gene28280.t1 MTR_8g067635 36.034 358 149 6 213 518 192 521 8.93e-53 187
MS.gene28280.t1 MTR_7g104980 47.236 199 77 2 362 533 18 215 1.23e-45 159
MS.gene28280.t1 MTR_1g099600 54.255 94 41 2 318 411 163 254 6.44e-29 117
MS.gene28280.t1 MTR_7g079040 47.573 103 53 1 309 411 122 223 4.26e-25 106
MS.gene28280.t1 MTR_8g028565 47.170 106 52 3 307 411 122 224 1.37e-24 105
MS.gene28280.t1 MTR_7g105000 42.667 150 48 3 240 361 201 340 6.04e-24 103
MS.gene28280.t1 MTR_7g105000 54.217 83 38 0 1 83 1 83 5.80e-13 70.9
MS.gene28280.t1 MTR_1g070455 66.102 59 20 0 342 400 294 352 2.60e-22 99.0
MS.gene28280.t1 MTR_4g052030 68.852 61 7 1 339 399 3 51 5.22e-21 86.7
MS.gene28280.t1 MTR_3g108960 42.857 91 51 1 317 406 289 379 7.66e-21 95.1
MS.gene28280.t1 MTR_8g098945 57.143 70 29 1 342 411 130 198 1.11e-20 92.4
MS.gene28280.t1 MTR_2g032030 55.714 70 30 1 342 411 268 336 1.30e-20 94.7
MS.gene28280.t1 MTR_8g087000 60.000 60 24 0 342 401 78 137 1.32e-20 91.7
MS.gene28280.t1 MTR_4g127040 61.017 59 23 0 342 400 246 304 1.47e-20 93.2
MS.gene28280.t1 MTR_8g087000 60.000 60 24 0 342 401 77 136 1.68e-20 91.3
MS.gene28280.t1 MTR_4g094908 62.069 58 22 0 342 399 267 324 2.22e-20 92.8
MS.gene28280.t1 MTR_2g032030 55.714 70 30 1 342 411 268 336 2.37e-20 94.4
MS.gene28280.t1 MTR_5g016610 60.345 58 23 0 342 399 200 257 6.86e-20 90.1
MS.gene28280.t1 MTR_2g083870 60.000 60 24 0 342 401 81 140 6.94e-20 89.7
MS.gene28280.t1 MTR_2g016770 60.000 60 24 0 342 401 36 95 1.52e-19 87.8
MS.gene28280.t1 MTR_2g016770 60.000 60 24 0 342 401 28 87 1.55e-19 87.4
MS.gene28280.t1 MTR_1g009613 63.158 57 21 0 342 398 263 319 2.99e-19 89.7
MS.gene28280.t1 MTR_7g109600 50.725 69 34 0 334 402 46 114 2.42e-18 85.5
MS.gene28280.t1 MTR_1g086790 43.333 90 49 2 321 410 139 226 4.17e-18 85.9
MS.gene28280.t1 MTR_0117s0040 53.125 64 30 0 335 398 68 131 4.53e-18 84.3
MS.gene28280.t1 MTR_2g045360 36.752 117 66 3 286 401 162 271 5.78e-18 86.7
MS.gene28280.t1 MTR_3g053330 50.000 60 30 0 342 401 252 311 2.02e-17 85.5
MS.gene28280.t1 MTR_3g009470 46.667 90 45 3 340 428 279 366 4.52e-17 85.1
MS.gene28280.t1 MTR_3g009470 49.254 67 33 1 336 402 490 555 3.25e-14 75.9
MS.gene28280.t1 MTR_3g009470 46.667 90 45 3 340 428 279 366 4.64e-17 84.3
MS.gene28280.t1 MTR_7g100510 46.667 90 46 2 326 415 174 261 7.36e-17 83.6
MS.gene28280.t1 MTR_7g100510 37.624 101 48 2 318 404 324 423 2.71e-15 78.6
MS.gene28280.t1 MTR_4g094588 48.684 76 37 2 327 402 165 238 9.30e-17 82.0
MS.gene28280.t1 MTR_3g106060 50.847 59 29 0 341 399 138 196 1.26e-16 80.9
MS.gene28280.t1 MTR_3g056100 44.681 94 48 3 334 424 395 487 1.68e-16 82.8
MS.gene28280.t1 MTR_3g056100 31.206 141 84 5 337 476 239 367 1.86e-11 67.0
MS.gene28280.t1 MTR_3g056100 44.681 94 48 3 334 424 408 500 1.74e-16 82.8
MS.gene28280.t1 MTR_3g056100 35.238 105 64 3 337 441 239 339 2.44e-11 66.6
MS.gene28280.t1 MTR_7g011820 53.731 67 30 1 336 402 405 470 2.44e-16 82.4
MS.gene28280.t1 MTR_7g011820 50.704 71 33 2 337 407 224 292 1.47e-15 79.7
MS.gene28280.t1 MTR_3g056100 44.681 94 48 3 334 424 251 343 2.52e-16 81.6
MS.gene28280.t1 MTR_3g056100 31.206 141 84 5 337 476 95 223 4.76e-11 65.5
MS.gene28280.t1 MTR_3g056100 44.681 94 48 3 334 424 264 356 2.69e-16 81.6
MS.gene28280.t1 MTR_3g056100 35.238 105 64 3 337 441 95 195 4.94e-11 65.5
MS.gene28280.t1 MTR_7g110720 48.485 66 34 0 336 401 184 249 2.97e-16 81.3
MS.gene28280.t1 MTR_7g110720 48.485 66 34 0 336 401 211 276 3.21e-16 81.3
MS.gene28280.t1 MTR_5g094430 49.275 69 34 1 334 402 357 424 4.32e-16 81.6
MS.gene28280.t1 MTR_5g094430 44.444 72 38 2 340 411 199 268 5.08e-11 65.5
MS.gene28280.t1 MTR_5g094430 49.275 69 34 1 334 402 245 312 6.02e-16 80.5
MS.gene28280.t1 MTR_5g094430 44.444 72 38 2 340 411 87 156 8.03e-11 64.7
MS.gene28280.t1 MTR_5g094430 49.275 69 34 1 334 402 223 290 6.36e-16 80.5
MS.gene28280.t1 MTR_5g094430 44.444 72 38 2 340 411 65 134 9.16e-11 64.3
MS.gene28280.t1 MTR_5g042920 50.704 71 34 1 336 406 315 384 7.47e-16 80.1
MS.gene28280.t1 MTR_5g042920 52.174 69 31 2 337 405 147 213 2.14e-14 75.9
MS.gene28280.t1 MTR_1g013790 47.541 61 32 0 341 401 101 161 7.58e-16 77.8
MS.gene28280.t1 MTR_4g132430 45.455 66 36 0 336 401 122 187 1.19e-15 79.0
MS.gene28280.t1 MTR_2g088000 38.889 90 55 0 336 425 344 433 1.62e-15 80.1
MS.gene28280.t1 MTR_4g082580 49.275 69 34 1 338 406 275 342 2.07e-15 78.6
MS.gene28280.t1 MTR_4g082580 44.615 65 35 1 337 401 141 204 6.08e-11 64.7
MS.gene28280.t1 MTR_3g031220 56.061 66 27 2 340 405 197 260 2.26e-15 78.6
MS.gene28280.t1 MTR_2g023930 45.455 66 36 0 336 401 300 365 2.71e-15 79.0
MS.gene28280.t1 MTR_7g109800 37.500 96 58 2 320 415 125 218 3.05e-15 77.0
MS.gene28280.t1 MTR_3g031220 56.061 66 27 2 340 405 197 260 3.33e-15 78.6
MS.gene28280.t1 MTR_3g031220 50.820 61 29 1 342 402 366 425 8.51e-14 74.3
MS.gene28280.t1 MTR_5g043880 36.719 128 69 4 312 439 96 211 3.48e-15 76.3
MS.gene28280.t1 MTR_4g007060 47.541 61 32 0 341 401 128 188 3.76e-15 76.3
MS.gene28280.t1 MTR_4g132430 45.455 66 36 0 336 401 256 321 4.13e-15 78.2
MS.gene28280.t1 MTR_4g007060 47.541 61 32 0 341 401 162 222 4.37e-15 76.6
MS.gene28280.t1 MTR_4g107970 50.000 60 30 0 342 401 179 238 4.87e-15 78.2
MS.gene28280.t1 MTR_2g033820 44.737 76 40 2 327 402 190 263 6.40e-15 77.0
MS.gene28280.t1 MTR_4g049790 36.842 95 60 0 336 430 307 401 6.56e-15 77.8
MS.gene28280.t1 MTR_5g074400 54.098 61 27 1 342 402 421 480 7.22e-15 77.8
MS.gene28280.t1 MTR_4g107970 50.000 60 30 0 342 401 256 315 8.84e-15 77.8
MS.gene28280.t1 MTR_7g080020 50.704 71 33 2 331 401 270 338 9.76e-15 77.8
MS.gene28280.t1 MTR_7g080020 49.231 65 32 1 342 406 494 557 5.35e-14 75.5
MS.gene28280.t1 MTR_4g049760 38.202 89 55 0 342 430 291 379 1.14e-14 77.0
MS.gene28280.t1 MTR_4g130900 46.269 67 35 1 339 405 357 422 1.45e-14 76.6
MS.gene28280.t1 MTR_7g009730 50.877 57 28 0 342 398 220 276 1.50e-14 76.6
MS.gene28280.t1 MTR_7g062220 46.753 77 37 3 328 403 113 186 1.56e-14 75.1
MS.gene28280.t1 MTR_5g097490 51.471 68 31 2 337 404 88 153 1.79e-14 75.9
MS.gene28280.t1 MTR_5g097490 49.254 67 33 1 336 402 247 312 2.44e-14 75.5
MS.gene28280.t1 MTR_4g094412 50.000 60 30 0 342 401 235 294 1.93e-14 76.3
MS.gene28280.t1 MTR_4g094412 50.000 60 30 0 342 401 244 303 2.37e-14 75.9
MS.gene28280.t1 MTR_7g071120 49.315 73 35 2 333 405 158 228 2.98e-14 75.5
MS.gene28280.t1 MTR_7g071120 50.820 61 29 1 342 402 325 384 5.35e-12 68.6
MS.gene28280.t1 MTR_4g122530 33.028 109 67 3 342 447 209 314 3.67e-14 75.1
MS.gene28280.t1 MTR_7g080000 49.275 69 33 2 341 409 234 300 8.80e-14 74.7
MS.gene28280.t1 MTR_7g080000 50.820 61 29 1 342 402 433 492 1.55e-13 73.9
MS.gene28280.t1 MTR_3g095040 43.750 64 35 1 338 401 115 177 9.34e-14 70.9
MS.gene28280.t1 MTR_5g091390 46.774 62 32 1 341 402 157 217 9.92e-14 72.4
MS.gene28280.t1 MTR_1g013760 46.552 58 31 0 342 399 141 198 1.03e-13 72.0
MS.gene28280.t1 MTR_2g105060 45.161 62 34 0 341 402 94 155 1.11e-13 71.2
MS.gene28280.t1 MTR_2g033110 49.153 177 56 5 1 143 1 177 1.22e-13 70.5
MS.gene28280.t1 MTR_4g013260 48.485 66 33 1 336 401 331 395 1.31e-13 73.6
MS.gene28280.t1 MTR_4g013260 42.857 77 43 1 325 401 168 243 9.75e-13 70.9
MS.gene28280.t1 MTR_2g105060 45.161 62 34 0 341 402 169 230 1.81e-13 72.0
MS.gene28280.t1 MTR_8g092010 43.939 66 36 1 336 401 103 167 5.91e-13 67.8
MS.gene28280.t1 MTR_1g015140 45.902 61 32 1 338 398 99 158 6.03e-13 67.4
MS.gene28280.t1 MTR_8g007270 50.000 58 28 1 342 399 155 211 7.32e-13 68.6
MS.gene28280.t1 MTR_7g079010 45.161 62 33 1 337 398 137 197 8.77e-13 68.2
MS.gene28280.t1 MTR_3g095080 40.845 71 39 2 331 399 156 225 1.05e-12 68.6
MS.gene28280.t1 MTR_8g092140 46.552 58 30 1 342 399 161 217 1.15e-12 68.2
MS.gene28280.t1 MTR_3g095080 40.845 71 39 2 331 399 132 201 1.79e-12 67.4
MS.gene28280.t1 MTR_7g028415 42.623 61 34 1 338 398 90 149 4.88e-12 65.1
MS.gene28280.t1 MTR_7g028710 42.623 61 34 1 338 398 90 149 4.88e-12 65.1
MS.gene28280.t1 MTR_1g078260 33.036 112 52 4 317 406 209 319 7.68e-12 68.2
MS.gene28280.t1 MTR_5g067680 48.276 58 28 1 341 396 202 259 8.18e-12 67.4
MS.gene28280.t1 MTR_1g077780 46.154 65 34 1 338 402 59 122 1.24e-11 63.2
MS.gene28280.t1 MTR_6g086555 43.662 71 37 3 336 405 202 270 2.01e-11 66.2
MS.gene28280.t1 MTR_3g104750 44.444 63 34 1 336 398 99 160 3.29e-11 62.4
MS.gene28280.t1 MTR_8g099350 36.471 85 48 2 318 396 105 189 6.73e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28280.t1 AT5G52830 54.255 94 41 2 318 411 143 234 1.88e-26 110
MS.gene28280.t1 AT4G01250 48.387 93 47 1 319 411 106 197 9.55e-25 104
MS.gene28280.t1 AT5G28650 64.407 59 21 0 342 400 263 321 4.70e-22 97.8
MS.gene28280.t1 AT3G04670 64.407 59 21 0 342 400 263 321 8.36e-22 97.1
MS.gene28280.t1 AT2G24570 59.091 66 27 0 342 407 244 309 2.13e-21 95.5
MS.gene28280.t1 AT4G31550 44.681 94 49 1 317 407 218 311 3.30e-21 95.1
MS.gene28280.t1 AT4G31550 57.576 66 28 0 342 407 247 312 3.75e-21 95.1
MS.gene28280.t1 AT4G23550 48.276 87 44 1 325 411 124 209 4.33e-21 94.4
MS.gene28280.t1 AT5G45050 43.878 98 53 2 314 410 1013 1109 7.37e-21 97.4
MS.gene28280.t1 AT5G45050 43.878 98 53 2 314 410 1152 1248 9.07e-21 97.1
MS.gene28280.t1 AT5G45050 43.878 98 53 2 314 410 1124 1220 9.41e-21 97.1
MS.gene28280.t1 AT2G23320 62.069 58 22 0 342 399 241 298 1.87e-20 92.8
MS.gene28280.t1 AT4G24240 43.269 104 55 2 300 399 236 339 2.03e-20 93.2
MS.gene28280.t1 AT2G34830 55.072 69 30 1 342 410 225 292 5.50e-20 93.2
MS.gene28280.t1 AT2G30590 48.235 85 41 1 319 400 288 372 5.60e-20 92.4
MS.gene28280.t1 AT2G34830 55.072 69 30 1 342 410 216 283 5.63e-20 92.8
MS.gene28280.t1 AT1G29280 45.055 91 41 1 320 401 44 134 1.53e-19 89.0
MS.gene28280.t1 AT3G58710 49.351 77 39 0 342 418 72 148 2.20e-19 88.6
MS.gene28280.t1 AT3G58710 49.351 77 39 0 342 418 71 147 2.20e-19 88.6
MS.gene28280.t1 AT1G30650 53.623 69 31 1 342 410 218 285 4.05e-19 90.5
MS.gene28280.t1 AT3G01080 54.545 66 29 1 336 401 339 403 5.78e-17 84.0
MS.gene28280.t1 AT3G01080 49.231 65 31 2 337 401 201 263 8.78e-14 73.9
MS.gene28280.t1 AT3G01080 54.545 66 29 1 336 401 301 365 8.16e-17 83.2
MS.gene28280.t1 AT3G01080 49.231 65 31 2 337 401 163 225 1.30e-13 73.2
MS.gene28280.t1 AT2G03340 53.030 66 30 1 336 401 410 474 2.29e-16 82.4
MS.gene28280.t1 AT2G03340 48.571 70 34 2 337 406 246 313 2.94e-13 72.8
MS.gene28280.t1 AT2G47260 41.304 92 52 2 320 411 154 243 2.70e-16 80.9
MS.gene28280.t1 AT4G22070 50.000 60 30 0 342 401 298 357 6.21e-16 81.3
MS.gene28280.t1 AT4G22070 50.000 60 30 0 342 401 298 357 6.21e-16 81.3
MS.gene28280.t1 AT4G22070 50.000 60 30 0 342 401 298 357 6.21e-16 81.3
MS.gene28280.t1 AT4G22070 50.000 60 30 0 342 401 298 357 6.21e-16 81.3
MS.gene28280.t1 AT1G62300 50.000 60 30 0 342 401 313 372 6.68e-16 80.9
MS.gene28280.t1 AT4G04450 50.000 60 30 0 342 401 199 258 1.25e-15 79.7
MS.gene28280.t1 AT1G13960 51.515 66 31 1 336 401 404 468 1.27e-15 80.1
MS.gene28280.t1 AT1G13960 45.570 79 37 3 323 401 215 287 2.26e-13 73.2
MS.gene28280.t1 AT2G38470 50.000 76 36 2 326 401 169 242 1.71e-15 79.7
MS.gene28280.t1 AT2G38470 55.000 60 26 1 342 401 363 421 5.89e-15 77.8
MS.gene28280.t1 AT4G04450 50.000 60 30 0 342 401 293 352 2.05e-15 79.3
MS.gene28280.t1 AT1G13960 51.515 66 31 1 336 401 251 315 3.16e-15 77.8
MS.gene28280.t1 AT1G13960 44.578 83 40 3 323 405 62 138 8.43e-13 70.5
MS.gene28280.t1 AT1G29860 41.573 89 50 2 327 415 123 209 3.71e-15 76.6
MS.gene28280.t1 AT4G26640 47.826 69 35 1 334 402 334 401 4.45e-15 78.2
MS.gene28280.t1 AT4G18170 43.902 82 44 2 321 402 153 232 4.50e-15 76.6
MS.gene28280.t1 AT1G68150 40.000 105 57 2 342 440 236 340 4.94e-15 77.4
MS.gene28280.t1 AT4G26640 47.826 69 35 1 334 402 374 441 5.79e-15 78.2
MS.gene28280.t1 AT4G30935 42.529 87 47 2 342 428 332 415 6.17e-15 77.8
MS.gene28280.t1 AT1G69810 43.421 76 42 1 336 410 140 215 6.29e-15 76.6
MS.gene28280.t1 AT4G26640 47.826 69 35 1 334 402 198 265 6.40e-15 77.0
MS.gene28280.t1 AT4G26640 47.826 69 35 1 334 402 198 265 6.40e-15 77.0
MS.gene28280.t1 AT4G26640 47.826 69 35 1 334 402 198 265 6.40e-15 77.0
MS.gene28280.t1 AT4G26640 47.826 69 35 1 334 402 198 265 6.40e-15 77.0
MS.gene28280.t1 AT4G26640 47.826 69 35 1 334 402 302 369 6.42e-15 77.8
MS.gene28280.t1 AT1G69810 42.466 73 41 1 342 413 204 276 6.48e-15 77.0
MS.gene28280.t1 AT2G04880 43.373 83 43 2 342 424 284 362 7.76e-15 77.4
MS.gene28280.t1 AT2G04880 43.373 83 43 2 342 424 308 386 8.28e-15 77.4
MS.gene28280.t1 AT5G43290 55.000 60 26 1 339 398 112 170 8.53e-15 75.1
MS.gene28280.t1 AT1G18860 50.000 60 30 0 342 401 240 299 1.12e-14 77.0
MS.gene28280.t1 AT1G80840 36.082 97 57 1 341 437 146 237 1.16e-14 75.5
MS.gene28280.t1 AT1G64000 44.444 63 34 1 336 398 109 170 1.46e-14 72.8
MS.gene28280.t1 AT1G69310 39.130 92 54 2 318 409 125 214 1.58e-14 74.7
MS.gene28280.t1 AT1G69310 39.130 92 54 2 318 409 125 214 1.58e-14 74.7
MS.gene28280.t1 AT1G69310 39.130 92 54 2 318 409 125 214 1.58e-14 74.7
MS.gene28280.t1 AT5G07100 48.529 68 34 1 342 409 235 301 1.61e-14 75.1
MS.gene28280.t1 AT5G07100 45.588 68 36 1 334 401 110 176 6.00e-13 70.1
MS.gene28280.t1 AT5G15130 48.333 60 31 0 342 401 186 245 1.73e-14 76.6
MS.gene28280.t1 AT5G15130 48.333 60 31 0 342 401 228 287 2.09e-14 76.3
MS.gene28280.t1 AT2G37260 40.476 84 46 2 318 398 323 405 2.36e-14 75.5
MS.gene28280.t1 AT2G37260 54.545 66 28 2 337 402 161 224 2.61e-14 75.5
MS.gene28280.t1 AT3G01080 49.231 65 31 2 337 401 201 263 2.40e-14 74.7
MS.gene28280.t1 AT5G46350 44.737 76 40 2 327 402 170 243 2.96e-14 74.3
MS.gene28280.t1 AT5G26170 50.000 64 31 1 336 399 108 170 3.15e-14 71.2
MS.gene28280.t1 AT2G30250 50.820 61 29 1 342 402 329 388 3.44e-14 75.1
MS.gene28280.t1 AT2G30250 50.000 66 31 2 340 405 165 228 1.47e-12 69.7
MS.gene28280.t1 AT2G37260 54.545 66 28 2 337 402 81 144 3.94e-14 74.3
MS.gene28280.t1 AT2G37260 40.476 84 46 2 318 398 243 325 4.02e-14 74.3
MS.gene28280.t1 AT5G07100 48.529 68 34 1 342 409 142 208 4.17e-14 72.0
MS.gene28280.t1 AT5G07100 45.588 68 36 1 334 401 17 83 1.97e-12 67.0
MS.gene28280.t1 AT5G07100 48.529 68 34 1 342 409 142 208 4.17e-14 72.0
MS.gene28280.t1 AT5G07100 45.588 68 36 1 334 401 17 83 1.97e-12 67.0
MS.gene28280.t1 AT5G07100 48.529 68 34 1 342 409 142 208 4.17e-14 72.0
MS.gene28280.t1 AT5G07100 45.588 68 36 1 334 401 17 83 1.97e-12 67.0
MS.gene28280.t1 AT5G07100 48.529 68 34 1 342 409 142 208 4.17e-14 72.0
MS.gene28280.t1 AT5G07100 45.588 68 36 1 334 401 17 83 1.97e-12 67.0
MS.gene28280.t1 AT2G37260 40.476 84 46 2 318 398 241 323 4.25e-14 74.3
MS.gene28280.t1 AT2G37260 54.545 66 28 2 337 402 79 142 4.29e-14 74.3
MS.gene28280.t1 AT4G31800 38.272 81 48 1 341 419 111 191 4.43e-14 72.8
MS.gene28280.t1 AT4G01720 48.333 60 31 0 342 401 240 299 5.39e-14 74.7
MS.gene28280.t1 AT5G56270 52.459 61 28 1 342 402 488 547 5.60e-14 75.1
MS.gene28280.t1 AT5G56270 50.000 66 31 2 340 405 272 335 3.29e-13 72.8
MS.gene28280.t1 AT4G26440 44.706 85 44 3 340 423 177 259 5.62e-14 75.1
MS.gene28280.t1 AT4G26440 42.857 77 43 1 342 418 373 448 1.31e-12 70.9
MS.gene28280.t1 AT5G41570 44.444 63 34 1 336 398 93 154 7.00e-14 70.5
MS.gene28280.t1 AT5G49520 48.333 60 30 1 342 401 222 280 9.49e-14 73.6
MS.gene28280.t1 AT4G31800 38.272 81 48 1 341 419 176 256 1.04e-13 72.4
MS.gene28280.t1 AT3G62340 46.032 63 31 2 342 403 119 179 2.17e-13 71.2
MS.gene28280.t1 AT2G44745 50.877 57 27 1 342 398 146 201 2.52e-13 69.7
MS.gene28280.t1 AT2G21900 47.541 61 31 1 342 402 110 169 8.17e-13 67.8
MS.gene28280.t1 AT1G55600 41.096 73 41 2 330 401 295 366 8.46e-13 71.2
MS.gene28280.t1 AT5G45260 46.970 66 33 1 342 405 1209 1274 1.30e-12 71.2
MS.gene28280.t1 AT2G25000 42.623 61 35 0 341 401 103 163 1.45e-12 67.8
MS.gene28280.t1 AT2G25000 42.623 61 35 0 341 401 103 163 1.45e-12 67.8
MS.gene28280.t1 AT2G25000 42.623 61 35 0 341 401 125 185 1.62e-12 68.2
MS.gene28280.t1 AT3G01970 44.928 69 35 2 338 404 62 129 2.09e-12 65.5
MS.gene28280.t1 AT2G25000 42.623 61 35 0 341 401 146 206 4.59e-12 67.0
MS.gene28280.t1 AT4G39410 40.845 71 39 2 331 399 211 280 4.89e-12 67.4
MS.gene28280.t1 AT5G13080 43.860 57 31 1 342 398 68 123 6.41e-12 63.9
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 397 536 1.16e-11 68.2
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.22e-11 68.2
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.22e-11 68.2
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.23e-11 68.2
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.38e-11 68.2
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.38e-11 68.2
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.56e-11 67.8
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.61e-11 67.8
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.62e-11 67.8
MS.gene28280.t1 AT4G12020 32.168 143 92 4 337 477 464 603 1.64e-11 67.8
MS.gene28280.t1 AT2G40740 39.286 84 46 2 318 396 147 230 2.94e-11 65.1
MS.gene28280.t1 AT2G40740 39.286 84 46 2 318 396 156 239 3.47e-11 64.7
MS.gene28280.t1 AT2G46130 45.614 57 30 1 342 398 31 86 3.88e-11 60.5
MS.gene28280.t1 AT4G12020 45.714 70 36 2 337 406 464 531 9.07e-11 65.5
MS.gene28280.t1 AT1G66560 39.560 91 51 2 310 396 70 160 9.68e-11 62.8

Find 148 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTGGTGCTGGTGGTGG+TGG 0.202175 2.1:+64824436 None:intergenic
CTCTCTAATAGTTCCATTTC+CGG 0.214380 2.1:+64822949 None:intergenic
GGTTGTGGTGGCAGTGATAA+TGG 0.263983 2.1:+64824295 None:intergenic
ATGAGTCCAGTTTCAGAATA+AGG 0.269380 2.1:+64822793 None:intergenic
GGTGGTGTGGGTGGGGATGG+TGG 0.270198 2.1:+64824391 None:intergenic
GGTGGGGATGGTGGTGGTCA+AGG 0.277140 2.1:+64824400 None:intergenic
GGTGGTGCTGGTGGTGGTGG+GGG 0.282046 2.1:+64824439 None:intergenic
TGGTGGTGCTGGTGGTGGTG+GGG 0.299381 2.1:+64824438 None:intergenic
TCGTGGGCGTGGAGGAAATA+TGG 0.318270 2.1:-64823599 MS.gene28280:CDS
GAGTATTGGAAAATTATATT+TGG 0.320543 2.1:+64823950 None:intergenic
TGGGGATGGTGGTGGTCAAG+GGG 0.326902 2.1:+64824402 None:intergenic
TGATAGGGGTAGTGGTGGTC+GGG 0.328659 2.1:+64824261 None:intergenic
GTTGTGGTGGCAGTGATAAT+GGG 0.330481 2.1:+64824296 None:intergenic
ATGAAGTCATTTGGTTTAAG+TGG 0.330576 2.1:+64824551 None:intergenic
TTGGTGGTGCTGGTGGTGGT+GGG 0.333587 2.1:+64824437 None:intergenic
GTGGGGATGGTGGTGGTCAA+GGG 0.334475 2.1:+64824401 None:intergenic
ATAGTTCCATTTCCGGATAA+AGG 0.337415 2.1:+64822956 None:intergenic
ATCAATGCATGCAACAGGTT+TGG 0.338091 2.1:+64823878 None:intergenic
ATCAATGCATGCAACAGGTT+TGG 0.338091 2.1:+64824106 None:intergenic
TGAGATAGTGTTGGTGGTGC+TGG 0.338766 2.1:+64824427 None:intergenic
CACTATGCAGATCGAGAAAA+AGG 0.340622 2.1:-64823809 MS.gene28280:intron
AAGTATTCGAAAATTATAAT+TGG 0.344998 2.1:+64824178 None:intergenic
GGGGATGGTGGTGGTCAAGG+GGG 0.349141 2.1:+64824403 None:intergenic
TGATTGGGGTAGTGGTGGTC+GGG 0.349837 2.1:+64824033 None:intergenic
GGTGTGGGTGGGGATGGTGG+TGG 0.350782 2.1:+64824394 None:intergenic
GTTGGTGGTGTGGGTGGGGA+TGG 0.351761 2.1:+64824388 None:intergenic
AACCTCCCTTATTCTGAAAC+TGG 0.353308 2.1:-64822799 MS.gene28280:CDS
TCAATGCATGCAACAGGTTT+GGG 0.360204 2.1:+64823879 None:intergenic
TCAATGCATGCAACAGGTTT+GGG 0.360204 2.1:+64824107 None:intergenic
TCTAGATCTATGAAGTCATT+TGG 0.366608 2.1:+64824542 None:intergenic
AAATCCAGGTTCCCCTAGTA+TGG 0.366946 2.1:-64823043 MS.gene28280:intron
ATCTGCAACATCACCATACT+AGG 0.367397 2.1:+64823030 None:intergenic
ATAATTGGTGGGATATTGAT+TGG 0.368833 2.1:+64824193 None:intergenic
TATTCTGAAACTGGACTCAT+TGG 0.369961 2.1:-64822790 MS.gene28280:CDS
AGGTGGCGGTGGATTTATAA+TGG 0.370242 2.1:+64824679 None:intergenic
TTGAGGGAATGTGATGTTAT+TGG 0.370353 2.1:+64824640 None:intergenic
TAATGTTGGTGGTGTGGGTG+GGG 0.371814 2.1:+64824384 None:intergenic
ATATTTGGTGAGATATTGAT+TGG 0.376688 2.1:+64823965 None:intergenic
TTGGTCAGAAGATTATTTAA+TGG 0.378102 2.1:-64822722 MS.gene28280:CDS
TTAATGTTGGTGGTGTGGGT+GGG 0.381017 2.1:+64824383 None:intergenic
ATACTAGTGGTAGCTGGGGT+GGG 0.383161 2.1:+64824491 None:intergenic
TGCTCGTAGCAGATATGATT+GGG 0.388493 2.1:+64824018 None:intergenic
GTGATAGGGGTAGTGGTGGT+CGG 0.394478 2.1:+64824260 None:intergenic
CCACAAAGTAGCAATGTTAC+AGG 0.394861 2.1:-64822838 MS.gene28280:CDS
GTGGTGGTGGTATTGAATTT+TGG 0.397057 2.1:+64824467 None:intergenic
AGTGGTAGCTGGGGTGGGGA+TGG 0.397195 2.1:+64824496 None:intergenic
GTGGTAGCTGGGGTGGGGAT+GGG 0.402056 2.1:+64824497 None:intergenic
TTGGTAGTGGTTTCGATTTG+AGG 0.403044 2.1:+64824659 None:intergenic
CCTGTAACATTGCTACTTTG+TGG 0.405802 2.1:+64822838 None:intergenic
GTTAATGTTGGTGGTGTGGG+TGG 0.406410 2.1:+64824382 None:intergenic
TTTAATAAGAATGTTGTTGT+TGG 0.409716 2.1:-64823143 MS.gene28280:intron
CAAAATGGTGTGACACTTTG+AGG 0.411481 2.1:+64824623 None:intergenic
GTGCTCGCAACAGATGTGAT+AGG 0.414305 2.1:+64824245 None:intergenic
AGTGTTGGTGGTGCTGGTGG+TGG 0.418934 2.1:+64824433 None:intergenic
GGTGTTAATGTTGGTGGTGT+GGG 0.420938 2.1:+64824379 None:intergenic
TTGATTGATCAGCGAGAACC+TGG 0.424637 2.1:+64822983 None:intergenic
GCAATGTTACAGGTGTTGTC+GGG 0.427945 2.1:-64822828 MS.gene28280:CDS
GTGATATCAATGCATGCAAC+AGG 0.433021 2.1:+64823873 None:intergenic
ATGATTGGGGTAGTGGTGGT+CGG 0.440238 2.1:+64824032 None:intergenic
GTAAGATTATCAGAGCAAAA+TGG 0.441277 2.1:+64824608 None:intergenic
ACAACATTCTTATTAAATGT+TGG 0.443200 2.1:+64823149 None:intergenic
TTGTGGTGGCAGTGATAATG+GGG 0.443656 2.1:+64824297 None:intergenic
GTGCTCGTAGCAGATATGAT+TGG 0.445306 2.1:+64824017 None:intergenic
TTAAGTGGGGCAAAAGAGAC+TGG 0.447663 2.1:+64824566 None:intergenic
TGAGTCCAGTTTCAGAATAA+GGG 0.453523 2.1:+64822794 None:intergenic
TATAACACATCAATGCCATT+TGG 0.456145 2.1:+64823648 None:intergenic
CATACTAGTGGTAGCTGGGG+TGG 0.457766 2.1:+64824490 None:intergenic
GAATGTGATGTTATTGGTAG+TGG 0.458828 2.1:+64824646 None:intergenic
TACTAGTGGTAGCTGGGGTG+GGG 0.460033 2.1:+64824492 None:intergenic
GTGATATCAATGCATGCAAC+AGG 0.463584 2.1:+64824101 None:intergenic
GGGAGTGGTGGGAGTAGTGA+TGG 0.464500 2.1:+64824331 None:intergenic
GATCCAACTTCTTCGACAAC+AGG 0.468621 2.1:+64822919 None:intergenic
TGTTGTTGCCCAGCGAGTAT+TGG 0.469068 2.1:+64823936 None:intergenic
AGCAGATATGATTGGGGTAG+TGG 0.472211 2.1:+64824025 None:intergenic
TTACCTGTTGTCGAAGAAGT+TGG 0.474676 2.1:-64822922 MS.gene28280:CDS
CGGGGTGATTATAGTGGTTG+TGG 0.477731 2.1:+64824280 None:intergenic
GGTAATGGTAGAGGGAGTGG+TGG 0.480162 2.1:+64824319 None:intergenic
TGAAGTCATTTGGTTTAAGT+GGG 0.485609 2.1:+64824552 None:intergenic
GTTTCGATTTGAGGTGGCGG+TGG 0.486220 2.1:+64824668 None:intergenic
ACCTGGGTATTGCTGCTCTC+CGG 0.486470 2.1:+64823000 None:intergenic
AGCAATGTTACAGGTGTTGT+CGG 0.487444 2.1:-64822829 MS.gene28280:CDS
TATTCGAAAATTATAATTGG+TGG 0.490355 2.1:+64824181 None:intergenic
ACCCAGGTTTCTAAAATTTG+AGG 0.494172 2.1:+64822894 None:intergenic
ATGGACTTCAACCGCCTCAA+TGG 0.499646 2.1:-64822703 MS.gene28280:CDS
TGCTCGCAACAGATGTGATA+GGG 0.499777 2.1:+64824246 None:intergenic
TTGGCATACTAGTGGTAGCT+GGG 0.501077 2.1:+64824486 None:intergenic
TGGCATTGATGTGTTATATG+AGG 0.512049 2.1:-64823643 MS.gene28280:CDS
AGTGGTGGGAGTAGTGATGG+TGG 0.515197 2.1:+64824334 None:intergenic
TTTGGCATACTAGTGGTAGC+TGG 0.515752 2.1:+64824485 None:intergenic
ATTCGAAAATTATAATTGGT+GGG 0.515904 2.1:+64824182 None:intergenic
TAGAAAACATAATAACCAAA+TGG 0.516057 2.1:-64823663 MS.gene28280:CDS
GGTGGTAGGAGTAGTAAAAG+TGG 0.518838 2.1:+64824700 None:intergenic
GTGGTGGGAGTAGTGATGGT+GGG 0.519264 2.1:+64824335 None:intergenic
ACTTATATTGTAACATATGA+AGG 0.520110 2.1:-64823191 MS.gene28280:CDS
GAGTAGTGATGGTGGGAGTG+TGG 0.520200 2.1:+64824342 None:intergenic
GATTGGGGTAGTGGTGGTCG+GGG 0.520285 2.1:+64824034 None:intergenic
GATGTTGCAGATCGATCATC+CGG 0.525110 2.1:-64823019 MS.gene28280:CDS
AACAGATGTGATAGGGGTAG+TGG 0.528816 2.1:+64824253 None:intergenic
TGATAACAAACATAACAGCT+TGG 0.533538 2.1:-64822741 MS.gene28280:CDS
TGGTGTTAATGTTGGTGGTG+TGG 0.545545 2.1:+64824378 None:intergenic
GATAGGGGTAGTGGTGGTCG+GGG 0.546614 2.1:+64824262 None:intergenic
GGTGGTCGGGGTGATTATAG+TGG 0.549679 2.1:+64824274 None:intergenic
AAAATGGTGTGACACTTTGA+GGG 0.550963 2.1:+64824624 None:intergenic
TTTCAAAAGACTCGTGGGCG+TGG 0.554710 2.1:-64823610 MS.gene28280:CDS
GTAATGGTAGAGGGAGTGGT+GGG 0.555015 2.1:+64824320 None:intergenic
AACACTGGTGTTAATGTTGG+TGG 0.559514 2.1:+64824373 None:intergenic
TTAAAGGGTCTCCACATCCA+AGG 0.571232 2.1:-64823565 MS.gene28280:intron
TGATTGTCCAGCAAGAAGAA+AGG 0.574441 2.1:-64823240 MS.gene28280:CDS
ATGAACACTAGTGTTTGTCA+TGG 0.575850 2.1:+64824220 None:intergenic
TCTGCAACATCACCATACTA+GGG 0.581668 2.1:+64823031 None:intergenic
TGGCATACTAGTGGTAGCTG+GGG 0.588013 2.1:+64824487 None:intergenic
TCGGGGTGATAGCTGATGGA+TGG 0.591717 2.1:+64824051 None:intergenic
GATAGTGTTGGTGGTGCTGG+TGG 0.594465 2.1:+64824430 None:intergenic
GTGGTTTCGATTTGAGGTGG+CGG 0.594576 2.1:+64824665 None:intergenic
GACTTCAACCGCCTCAATGG+TGG 0.595091 2.1:-64822700 MS.gene28280:CDS
GTAGTGGTTTCGATTTGAGG+TGG 0.597682 2.1:+64824662 None:intergenic
GGAATATAGCACCACCATTG+AGG 0.603269 2.1:+64822689 None:intergenic
ATGAACACTAGTCTTTGTCA+TGG 0.605141 2.1:+64823992 None:intergenic
TCCGGAGAGCAGCAATACCC+AGG 0.606173 2.1:-64823001 MS.gene28280:CDS
GGTGGATTTATAATGGTGGT+AGG 0.606566 2.1:+64824686 None:intergenic
ATGAACACTGGTGTTAATGT+TGG 0.608499 2.1:+64824370 None:intergenic
TGGCGGTGGATTTATAATGG+TGG 0.610682 2.1:+64824682 None:intergenic
GGCATTGATGTGTTATATGA+GGG 0.611463 2.1:-64823642 MS.gene28280:CDS
GTGGTCGGGGTGATAGCTGA+TGG 0.611835 2.1:+64824047 None:intergenic
GTCCAGTTTCAGAATAAGGG+AGG 0.616537 2.1:+64822797 None:intergenic
GAAGTCATTTGGTTTAAGTG+GGG 0.620194 2.1:+64824553 None:intergenic
ATATGTGTAAACCTTGGATG+TGG 0.620653 2.1:+64823554 None:intergenic
GCTATTACAAATGTAGCACT+TGG 0.620926 2.1:-64823265 MS.gene28280:CDS
TGCATAGTGCAACTGATGGA+TGG 0.623878 2.1:+64823823 None:intergenic
CAAAAGACTCGTGGGCGTGG+AGG 0.623998 2.1:-64823607 MS.gene28280:CDS
TGAGCTTTCAAAAGACTCGT+GGG 0.628685 2.1:-64823615 MS.gene28280:CDS
CAATGTTACAGGTGTTGTCG+GGG 0.630623 2.1:-64822827 MS.gene28280:CDS
ATTGATGTGTTATATGAGGG+AGG 0.631085 2.1:-64823639 MS.gene28280:CDS
GATCTGCATAGTGCAACTGA+TGG 0.634706 2.1:+64823819 None:intergenic
ATGAGCTTTCAAAAGACTCG+TGG 0.638619 2.1:-64823616 MS.gene28280:CDS
AGATGTGATAGGGGTAGTGG+TGG 0.641506 2.1:+64824256 None:intergenic
AGATATGATTGGGGTAGTGG+TGG 0.642708 2.1:+64824028 None:intergenic
GGTGATTATAGTGGTTGTGG+TGG 0.648806 2.1:+64824283 None:intergenic
GTATGCACGTTCAAAATGAG+CGG 0.654003 2.1:+64823848 None:intergenic
GCTCGCAACAGATGTGATAG+GGG 0.661755 2.1:+64824247 None:intergenic
TGATTGATCAGCGAGAACCT+GGG 0.667246 2.1:+64822984 None:intergenic
GTATGCACATTCAAAATGAG+TGG 0.673260 2.1:+64824076 None:intergenic
TATGCACATTCAAAATGAGT+GGG 0.679056 2.1:+64824077 None:intergenic
ATATAGCACCACCATTGAGG+CGG 0.679111 2.1:+64822692 None:intergenic
TGTGGTGGCAGTGATAATGG+GGG 0.691274 2.1:+64824298 None:intergenic
GCTCGTAGCAGATATGATTG+GGG 0.709067 2.1:+64824019 None:intergenic
AGTGTGGATAACATGAACAC+TGG 0.712481 2.1:+64824358 None:intergenic
CTGCAACATCACCATACTAG+GGG 0.719168 2.1:+64823032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTATTCGAAAATTATAAT+TGG + chr2.1:64823261-64823280 None:intergenic 15.0%
!!! ATTTTGAAAACATCAAAAAT+TGG - chr2.1:64824093-64824112 MS.gene28280:CDS 15.0%
!! ACAACATTCTTATTAAATGT+TGG + chr2.1:64824290-64824309 None:intergenic 20.0%
!! ACTTATATTGTAACATATGA+AGG - chr2.1:64824245-64824264 MS.gene28280:CDS 20.0%
!! ATTCGAAAATTATAATTGGT+GGG + chr2.1:64823257-64823276 None:intergenic 20.0%
!! ATTTCTTTCAACATCATTTA+TGG + chr2.1:64824131-64824150 None:intergenic 20.0%
!! TAGAAAACATAATAACCAAA+TGG - chr2.1:64823773-64823792 MS.gene28280:intron 20.0%
!! TATTCGAAAATTATAATTGG+TGG + chr2.1:64823258-64823277 None:intergenic 20.0%
!! TTTAATAAGAATGTTGTTGT+TGG - chr2.1:64824293-64824312 MS.gene28280:CDS 20.0%
!!! GAGTATTGGAAAATTATATT+TGG + chr2.1:64823489-64823508 None:intergenic 20.0%
!!! TGTTTTCTATAAGAAAAGAA+AGG + chr2.1:64823762-64823781 None:intergenic 20.0%
! AAATCAATAAATGATGTTGC+AGG - chr2.1:64824147-64824166 MS.gene28280:CDS 25.0%
! AACACATCTTATCTTAATCA+TGG - chr2.1:64824054-64824073 MS.gene28280:CDS 25.0%
! ATGGACAAAAAGCTATTAAA+GGG - chr2.1:64823856-64823875 MS.gene28280:CDS 25.0%
! TACAATTATATGCACTAACA+AGG + chr2.1:64824025-64824044 None:intergenic 25.0%
! TATGGACAAAAAGCTATTAA+AGG - chr2.1:64823855-64823874 MS.gene28280:CDS 25.0%
! TCAATCAAAAATCCTTTATC+CGG - chr2.1:64824468-64824487 MS.gene28280:CDS 25.0%
! TTGGTCAGAAGATTATTTAA+TGG - chr2.1:64824714-64824733 MS.gene28280:CDS 25.0%
!! ATATTTGGTGAGATATTGAT+TGG + chr2.1:64823474-64823493 None:intergenic 25.0%
!! TATAATTTTCGAATACTTGC+TGG - chr2.1:64823263-64823282 MS.gene28280:CDS 25.0%
!! TTTTGAATATGTGTAAACCT+TGG + chr2.1:64823891-64823910 None:intergenic 25.0%
AAAAATCCTTTATCCGGAAA+TGG - chr2.1:64824474-64824493 MS.gene28280:CDS 30.0%
AATACAAACATCACAAATCC+AGG - chr2.1:64824379-64824398 MS.gene28280:CDS 30.0%
ATAATTGGTGGGATATTGAT+TGG + chr2.1:64823246-64823265 None:intergenic 30.0%
GTAAGATTATCAGAGCAAAA+TGG + chr2.1:64822831-64822850 None:intergenic 30.0%
TATAACACATCAATGCCATT+TGG + chr2.1:64823791-64823810 None:intergenic 30.0%
TATGCACATTCAAAATGAGT+GGG + chr2.1:64823362-64823381 None:intergenic 30.0%
TCTAGATCTATGAAGTCATT+TGG + chr2.1:64822897-64822916 None:intergenic 30.0%
TGATAACAAACATAACAGCT+TGG - chr2.1:64824695-64824714 MS.gene28280:CDS 30.0%
TTGACGTAACTTAATTCTAG+TGG - chr2.1:64823721-64823740 MS.gene28280:intron 30.0%
TTGTTACATGAAACAAACAC+TGG - chr2.1:64823960-64823979 MS.gene28280:CDS 30.0%
! ATAATTTTCCAATACTCGCT+GGG - chr2.1:64823492-64823511 MS.gene28280:intron 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG + chr2.1:64822888-64822907 None:intergenic 30.0%
! TATAATTTTCCAATACTCGC+TGG - chr2.1:64823491-64823510 MS.gene28280:intron 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG + chr2.1:64822887-64822906 None:intergenic 30.0%
!! ATCCTCAAATTTTAGAAACC+TGG - chr2.1:64824540-64824559 MS.gene28280:CDS 30.0%
!! ATTGAATTTTGGCATACTAG+TGG + chr2.1:64822961-64822980 None:intergenic 30.0%
!! TCCTCAAATTTTAGAAACCT+GGG - chr2.1:64824541-64824560 MS.gene28280:CDS 30.0%
!!! AATCACCTTTTAAAACACGA+CGG + chr2.1:64823988-64824007 None:intergenic 30.0%
AAAATGGTGTGACACTTTGA+GGG + chr2.1:64822815-64822834 None:intergenic 35.0%
ATAGTTCCATTTCCGGATAA+AGG + chr2.1:64824483-64824502 None:intergenic 35.0%
ATATGTGTAAACCTTGGATG+TGG + chr2.1:64823885-64823904 None:intergenic 35.0%
ATGAACACTAGTGTTTGTCA+TGG + chr2.1:64823219-64823238 None:intergenic 35.0%
ATGAGTCCAGTTTCAGAATA+AGG + chr2.1:64824646-64824665 None:intergenic 35.0%
ATTGATGTGTTATATGAGGG+AGG - chr2.1:64823797-64823816 MS.gene28280:intron 35.0%
CTCTCTAATAGTTCCATTTC+CGG + chr2.1:64824490-64824509 None:intergenic 35.0%
GAATGTGATGTTATTGGTAG+TGG + chr2.1:64822793-64822812 None:intergenic 35.0%
GCTATTACAAATGTAGCACT+TGG - chr2.1:64824171-64824190 MS.gene28280:CDS 35.0%
GTATGCACATTCAAAATGAG+TGG + chr2.1:64823363-64823382 None:intergenic 35.0%
TGAGTCCAGTTTCAGAATAA+GGG + chr2.1:64824645-64824664 None:intergenic 35.0%
TTGAGGGAATGTGATGTTAT+TGG + chr2.1:64822799-64822818 None:intergenic 35.0%
! AAGAGACTGGACTATTTTCT+TGG + chr2.1:64822860-64822879 None:intergenic 35.0%
! ATGAACACTGGTGTTAATGT+TGG + chr2.1:64823069-64823088 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG + chr2.1:64822886-64822905 None:intergenic 35.0%
! TTTTCAACCTTTCTTCTTGC+TGG + chr2.1:64824206-64824225 None:intergenic 35.0%
!! ACCCAGGTTTCTAAAATTTG+AGG + chr2.1:64824545-64824564 None:intergenic 35.0%
!! ATGAACACTAGTCTTTGTCA+TGG + chr2.1:64823447-64823466 None:intergenic 35.0%
!! GGCATTGATGTGTTATATGA+GGG - chr2.1:64823794-64823813 MS.gene28280:intron 35.0%
!! TATTCTGAAACTGGACTCAT+TGG - chr2.1:64824646-64824665 MS.gene28280:CDS 35.0%
!! TCATTTTGTTATGTGAACCC+AGG + chr2.1:64824561-64824580 None:intergenic 35.0%
!! TGGCATTGATGTGTTATATG+AGG - chr2.1:64823793-64823812 MS.gene28280:intron 35.0%
AGTGTGGATAACATGAACAC+TGG + chr2.1:64823081-64823100 None:intergenic 40.0%
ATCAATGCATGCAACAGGTT+TGG + chr2.1:64823333-64823352 None:intergenic 40.0%
ATCTGCAACATCACCATACT+AGG + chr2.1:64824409-64824428 None:intergenic 40.0%
ATGAGCTTTCAAAAGACTCG+TGG - chr2.1:64823820-64823839 MS.gene28280:CDS 40.0%
CAAAATGGTGTGACACTTTG+AGG + chr2.1:64822816-64822835 None:intergenic 40.0%
CACTATGCAGATCGAGAAAA+AGG - chr2.1:64823627-64823646 MS.gene28280:CDS 40.0%
CCACAAAGTAGCAATGTTAC+AGG - chr2.1:64824598-64824617 MS.gene28280:CDS 40.0%
GTATGCACGTTCAAAATGAG+CGG + chr2.1:64823591-64823610 None:intergenic 40.0%
GTGATATCAATGCATGCAAC+AGG + chr2.1:64823338-64823357 None:intergenic 40.0%
TCAATGCATGCAACAGGTTT+GGG + chr2.1:64823332-64823351 None:intergenic 40.0%
TCTGCAACATCACCATACTA+GGG + chr2.1:64824408-64824427 None:intergenic 40.0%
TGAGCTTTCAAAAGACTCGT+GGG - chr2.1:64823821-64823840 MS.gene28280:CDS 40.0%
TGATTGTCCAGCAAGAAGAA+AGG - chr2.1:64824196-64824215 MS.gene28280:CDS 40.0%
TGCTCGTAGCAGATATGATT+GGG + chr2.1:64823421-64823440 None:intergenic 40.0%
TTACCTGTTGTCGAAGAAGT+TGG - chr2.1:64824514-64824533 MS.gene28280:CDS 40.0%
! AACACTGGTGTTAATGTTGG+TGG + chr2.1:64823066-64823085 None:intergenic 40.0%
! AGCAATGTTACAGGTGTTGT+CGG - chr2.1:64824607-64824626 MS.gene28280:CDS 40.0%
! ATAATGGGGGTAATGGTAGA+GGG + chr2.1:64823128-64823147 None:intergenic 40.0%
! GGTGGATTTATAATGGTGGT+AGG + chr2.1:64822753-64822772 None:intergenic 40.0%
!! AACCTCCCTTATTCTGAAAC+TGG - chr2.1:64824637-64824656 MS.gene28280:CDS 40.0%
!! CCTGTAACATTGCTACTTTG+TGG + chr2.1:64824601-64824620 None:intergenic 40.0%
!! TTGGTAGTGGTTTCGATTTG+AGG + chr2.1:64822780-64822799 None:intergenic 40.0%
!!! GTGGTGGTGGTATTGAATTT+TGG + chr2.1:64822972-64822991 None:intergenic 40.0%
AAATCCAGGTTCCCCTAGTA+TGG - chr2.1:64824393-64824412 MS.gene28280:CDS 45.0%
AACAGATGTGATAGGGGTAG+TGG + chr2.1:64823186-64823205 None:intergenic 45.0%
AGCAGATATGATTGGGGTAG+TGG + chr2.1:64823414-64823433 None:intergenic 45.0%
ATATAGCACCACCATTGAGG+CGG + chr2.1:64824747-64824766 None:intergenic 45.0%
CTGCAACATCACCATACTAG+GGG + chr2.1:64824407-64824426 None:intergenic 45.0%
GATCCAACTTCTTCGACAAC+AGG + chr2.1:64824520-64824539 None:intergenic 45.0%
GATCTGCATAGTGCAACTGA+TGG + chr2.1:64823620-64823639 None:intergenic 45.0%
GATGTTGCAGATCGATCATC+CGG - chr2.1:64824417-64824436 MS.gene28280:CDS 45.0%
GCTCGTAGCAGATATGATTG+GGG + chr2.1:64823420-64823439 None:intergenic 45.0%
GGAATATAGCACCACCATTG+AGG + chr2.1:64824750-64824769 None:intergenic 45.0%
GGTGATTATAGTGGTTGTGG+TGG + chr2.1:64823156-64823175 None:intergenic 45.0%
GGTGGTAGGAGTAGTAAAAG+TGG + chr2.1:64822739-64822758 None:intergenic 45.0%
GTCCAGTTTCAGAATAAGGG+AGG + chr2.1:64824642-64824661 None:intergenic 45.0%
GTGCTCGTAGCAGATATGAT+TGG + chr2.1:64823422-64823441 None:intergenic 45.0%
GTTGTGGTGGCAGTGATAAT+GGG + chr2.1:64823143-64823162 None:intergenic 45.0%
TGATTGATCAGCGAGAACCT+GGG + chr2.1:64824455-64824474 None:intergenic 45.0%
TGCATAGTGCAACTGATGGA+TGG + chr2.1:64823616-64823635 None:intergenic 45.0%
TGCTCGCAACAGATGTGATA+GGG + chr2.1:64823193-64823212 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG - chr2.1:64823871-64823890 MS.gene28280:CDS 45.0%
TTAAGTGGGGCAAAAGAGAC+TGG + chr2.1:64822873-64822892 None:intergenic 45.0%
TTACACTCTGCGGAAGAAAC+TGG - chr2.1:64824347-64824366 MS.gene28280:CDS 45.0%
TTGATTGATCAGCGAGAACC+TGG + chr2.1:64824456-64824475 None:intergenic 45.0%
TTGGCATACTAGTGGTAGCT+GGG + chr2.1:64822953-64822972 None:intergenic 45.0%
TTTGGCATACTAGTGGTAGC+TGG + chr2.1:64822954-64822973 None:intergenic 45.0%
! AGATATGATTGGGGTAGTGG+TGG + chr2.1:64823411-64823430 None:intergenic 45.0%
! AGGTGGCGGTGGATTTATAA+TGG + chr2.1:64822760-64822779 None:intergenic 45.0%
! CAATGTTACAGGTGTTGTCG+GGG - chr2.1:64824609-64824628 MS.gene28280:CDS 45.0%
! GCAATGTTACAGGTGTTGTC+GGG - chr2.1:64824608-64824627 MS.gene28280:CDS 45.0%
! GTAGTGGTTTCGATTTGAGG+TGG + chr2.1:64822777-64822796 None:intergenic 45.0%
! TGGCGGTGGATTTATAATGG+TGG + chr2.1:64822757-64822776 None:intergenic 45.0%
! TTGTGGTGGCAGTGATAATG+GGG + chr2.1:64823142-64823161 None:intergenic 45.0%
!! GATAATGGGGGTAATGGTAG+AGG + chr2.1:64823129-64823148 None:intergenic 45.0%
!! GGTGTTAATGTTGGTGGTGT+GGG + chr2.1:64823060-64823079 None:intergenic 45.0%
!! TGGCACCGTCGTGTTTTAAA+AGG - chr2.1:64823980-64823999 MS.gene28280:CDS 45.0%
!! TGGTGTTAATGTTGGTGGTG+TGG + chr2.1:64823061-64823080 None:intergenic 45.0%
!! TTAATGTTGGTGGTGTGGGT+GGG + chr2.1:64823056-64823075 None:intergenic 45.0%
ATACTAGTGGTAGCTGGGGT+GGG + chr2.1:64822948-64822967 None:intergenic 50.0%
ATCACCATACTAGGGGAACC+TGG + chr2.1:64824400-64824419 None:intergenic 50.0%
ATGGACTTCAACCGCCTCAA+TGG - chr2.1:64824733-64824752 MS.gene28280:CDS 50.0%
CAAGGGGGATGAGATAGTGT+TGG + chr2.1:64823021-64823040 None:intergenic 50.0%
CGGGGTGATTATAGTGGTTG+TGG + chr2.1:64823159-64823178 None:intergenic 50.0%
GCTCGCAACAGATGTGATAG+GGG + chr2.1:64823192-64823211 None:intergenic 50.0%
GGTTGTGGTGGCAGTGATAA+TGG + chr2.1:64823144-64823163 None:intergenic 50.0%
GTAATGGTAGAGGGAGTGGT+GGG + chr2.1:64823119-64823138 None:intergenic 50.0%
GTGCTCGCAACAGATGTGAT+AGG + chr2.1:64823194-64823213 None:intergenic 50.0%
TGGCATACTAGTGGTAGCTG+GGG + chr2.1:64822952-64822971 None:intergenic 50.0%
TGTTGTTGCCCAGCGAGTAT+TGG + chr2.1:64823503-64823522 None:intergenic 50.0%
TTTCAAAAGACTCGTGGGCG+TGG - chr2.1:64823826-64823845 MS.gene28280:CDS 50.0%
! AGATGTGATAGGGGTAGTGG+TGG + chr2.1:64823183-64823202 None:intergenic 50.0%
! ATGATTGGGGTAGTGGTGGT+CGG + chr2.1:64823407-64823426 None:intergenic 50.0%
! GTGGTTTCGATTTGAGGTGG+CGG + chr2.1:64822774-64822793 None:intergenic 50.0%
!! GGCAGTGATAATGGGGGTAA+TGG + chr2.1:64823135-64823154 None:intergenic 50.0%
!! GTTAATGTTGGTGGTGTGGG+TGG + chr2.1:64823057-64823076 None:intergenic 50.0%
!! TAATGTTGGTGGTGTGGGTG+GGG + chr2.1:64823055-64823074 None:intergenic 50.0%
!! TGAGATAGTGTTGGTGGTGC+TGG + chr2.1:64823012-64823031 None:intergenic 50.0%
!! TGTGGTGGCAGTGATAATGG+GGG + chr2.1:64823141-64823160 None:intergenic 50.0%
AGCGCAAGTCACTGGAGACT+GGG - chr2.1:64824324-64824343 MS.gene28280:CDS 55.0%
CATACTAGTGGTAGCTGGGG+TGG + chr2.1:64822949-64822968 None:intergenic 55.0%
GACTTCAACCGCCTCAATGG+TGG - chr2.1:64824736-64824755 MS.gene28280:CDS 55.0%
GGAGACTGGGTTACACTCTG+CGG - chr2.1:64824337-64824356 MS.gene28280:CDS 55.0%
GGTGGTCGGGGTGATTATAG+TGG + chr2.1:64823165-64823184 None:intergenic 55.0%
TACATCCCAGCGCAAGTCAC+TGG - chr2.1:64824316-64824335 MS.gene28280:CDS 55.0%
TACTAGTGGTAGCTGGGGTG+GGG + chr2.1:64822947-64822966 None:intergenic 55.0%
TCGGGGTGATAGCTGATGGA+TGG + chr2.1:64823388-64823407 None:intergenic 55.0%
TCGTGGGCGTGGAGGAAATA+TGG - chr2.1:64823837-64823856 MS.gene28280:CDS 55.0%
! ACCTGGGTATTGCTGCTCTC+CGG + chr2.1:64824439-64824458 None:intergenic 55.0%
! AGTCTCCAGTGACTTGCGCT+GGG + chr2.1:64824324-64824343 None:intergenic 55.0%
! AGTGGTGGGAGTAGTGATGG+TGG + chr2.1:64823105-64823124 None:intergenic 55.0%
! GGGGGATGAGATAGTGTTGG+TGG + chr2.1:64823018-64823037 None:intergenic 55.0%
! GGTAATGGTAGAGGGAGTGG+TGG + chr2.1:64823120-64823139 None:intergenic 55.0%
! GTGATAGGGGTAGTGGTGGT+CGG + chr2.1:64823179-64823198 None:intergenic 55.0%
! GTGGTGGGAGTAGTGATGGT+GGG + chr2.1:64823104-64823123 None:intergenic 55.0%
! GTTTCGATTTGAGGTGGCGG+TGG + chr2.1:64822771-64822790 None:intergenic 55.0%
! TGATAGGGGTAGTGGTGGTC+GGG + chr2.1:64823178-64823197 None:intergenic 55.0%
! TGATTGGGGTAGTGGTGGTC+GGG + chr2.1:64823406-64823425 None:intergenic 55.0%
!! GAGTAGTGATGGTGGGAGTG+TGG + chr2.1:64823097-64823116 None:intergenic 55.0%
!! GATAGTGTTGGTGGTGCTGG+TGG + chr2.1:64823009-64823028 None:intergenic 55.0%
CAAAAGACTCGTGGGCGTGG+AGG - chr2.1:64823829-64823848 MS.gene28280:CDS 60.0%
CAGCGCAAGTCACTGGAGAC+TGG - chr2.1:64824323-64824342 MS.gene28280:CDS 60.0%
GTGGTCGGGGTGATAGCTGA+TGG + chr2.1:64823392-64823411 None:intergenic 60.0%
TCCGGAGAGCAGCAATACCC+AGG - chr2.1:64824435-64824454 MS.gene28280:CDS 60.0%
! CAGTCTCCAGTGACTTGCGC+TGG + chr2.1:64824325-64824344 None:intergenic 60.0%
! GATAGGGGTAGTGGTGGTCG+GGG + chr2.1:64823177-64823196 None:intergenic 60.0%
! GATTGGGGTAGTGGTGGTCG+GGG + chr2.1:64823405-64823424 None:intergenic 60.0%
! GGGAGTGGTGGGAGTAGTGA+TGG + chr2.1:64823108-64823127 None:intergenic 60.0%
! GGGGGTAATGGTAGAGGGAG+TGG + chr2.1:64823123-64823142 None:intergenic 60.0%
!! AGTGTTGGTGGTGCTGGTGG+TGG + chr2.1:64823006-64823025 None:intergenic 60.0%
!! GTGGGGATGGTGGTGGTCAA+GGG + chr2.1:64823038-64823057 None:intergenic 60.0%
!! TGGGGATGGTGGTGGTCAAG+GGG + chr2.1:64823037-64823056 None:intergenic 60.0%
!! TTGGTGGTGCTGGTGGTGGT+GGG + chr2.1:64823002-64823021 None:intergenic 60.0%
AGTGGTAGCTGGGGTGGGGA+TGG + chr2.1:64822943-64822962 None:intergenic 65.0%
GGTGGGGGAAGATGTGGTGG+TGG + chr2.1:64822985-64823004 None:intergenic 65.0%
GTGGTAGCTGGGGTGGGGAT+GGG + chr2.1:64822942-64822961 None:intergenic 65.0%
!! GGGGATGGTGGTGGTCAAGG+GGG + chr2.1:64823036-64823055 None:intergenic 65.0%
!! GGTGGGGATGGTGGTGGTCA+AGG + chr2.1:64823039-64823058 None:intergenic 65.0%
!! GGTGGTGGGGGAAGATGTGG+TGG + chr2.1:64822988-64823007 None:intergenic 65.0%
!! GGTGGTGGTGGGGGAAGATG+TGG + chr2.1:64822991-64823010 None:intergenic 65.0%
!! GTTGGTGGTGCTGGTGGTGG+TGG + chr2.1:64823003-64823022 None:intergenic 65.0%
!! GTTGGTGGTGTGGGTGGGGA+TGG + chr2.1:64823051-64823070 None:intergenic 65.0%
!! TGGTGGTGCTGGTGGTGGTG+GGG + chr2.1:64823001-64823020 None:intergenic 65.0%
GGTGGTGTGGGTGGGGATGG+TGG + chr2.1:64823048-64823067 None:intergenic 70.0%
! GGTGTGGGTGGGGATGGTGG+TGG + chr2.1:64823045-64823064 None:intergenic 70.0%
!! GGTGGTGCTGGTGGTGGTGG+GGG + chr2.1:64823000-64823019 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 64822684 64824774 64822684 ID=MS.gene28280
chr2.1 mRNA 64822684 64824774 64822684 ID=MS.gene28280.t1;Parent=MS.gene28280
chr2.1 exon 64823810 64824774 64823810 ID=MS.gene28280.t1.exon1;Parent=MS.gene28280.t1
chr2.1 CDS 64823810 64824774 64823810 ID=cds.MS.gene28280.t1;Parent=MS.gene28280.t1
chr2.1 exon 64823566 64823682 64823566 ID=MS.gene28280.t1.exon2;Parent=MS.gene28280.t1
chr2.1 CDS 64823566 64823682 64823566 ID=cds.MS.gene28280.t1;Parent=MS.gene28280.t1
chr2.1 exon 64823144 64823289 64823144 ID=MS.gene28280.t1.exon3;Parent=MS.gene28280.t1
chr2.1 CDS 64823144 64823289 64823144 ID=cds.MS.gene28280.t1;Parent=MS.gene28280.t1
chr2.1 exon 64822684 64823057 64822684 ID=MS.gene28280.t1.exon4;Parent=MS.gene28280.t1
chr2.1 CDS 64822684 64823057 64822684 ID=cds.MS.gene28280.t1;Parent=MS.gene28280.t1
Gene Sequence

>MS.gene28280

ATGGATAATGATGATCGAGATCTCTTTTCTATTGTTCGTAGCTGCAACGCTACCACTTTTACTACTCCTACCACCATTATAAATCCACCGCCACCTCAAATCGAAACCACTACCAATAACATCACATTCCCTCAAAGTGTCACACCATTTTGCTCTGATAATCTTACTTTTAACCAAGAAAATAGTCCAGTCTCTTTTGCCCCACTTAAACCAAATGACTTCATAGATCTAGATAAATTGATGATCAATTTCAATCCCATCCCCACCCCAGCTACCACTAGTATGCCAAAATTCAATACCACCACCACATCTTCCCCCACCACCACCAGCACCACCAACACTATCTCATCCCCCTTGACCACCACCATCCCCACCCACACCACCAACATTAACACCAGTGTTCATGTTATCCACACTCCCACCATCACTACTCCCACCACTCCCTCTACCATTACCCCCATTATCACTGCCACCACAACCACTATAATCACCCCGACCACCACTACCCCTATCACATCTGTTGCGAGCACTTCCATGACAAACACTAGTGTTCATGAAACCAATCAATATCCCACCAATTATAATTTTCGAATACTTGCTGGACAACAACAGATTCAACAAAACATCAACAATCAAGTGTCTGTTCCCAAACCTGTTGCATGCATTGATATCACACCCACTCATTTTGAATGTGCATACAACCATCCATCAGCTATCACCCCGACCACCACTACCCCAATCATATCTGCTACGAGCACTGCCATGACAAAGACTAGTGTTCATGAAACCAATCAATATCTCACCAAATATAATTTTCCAATACTCGCTGGGCAACAACAGATTCAACAAAACATCAACAATCAAGCGTCTGTTCCCAAACCTGTTGCATGCATTGATATCACAACCGCTCATTTTGAACGTGCATACAACCATCCATCAGTTGCACTATGCAGATCGAGAAAAAGGTAAAGTATTTATTTTATTATTTCATATATGTTAATTATAAATCAATTTTAGTGTCAAAATAATTGAAATATTTGACGTAACTTAATTCTAGTGGACTAAAATCATTTTACCTTTCTTTTCTTATAGAAAACATAATAACCAAATGGCATTGATGTGTTATATGAGGGAGGATGAGCTTTCAAAAGACTCGTGGGCGTGGAGGAAATATGGACAAAAAGCTATTAAAGGGTCTCCACATCCAAGGTTTACACATATTCAAAACTCTATCGTTAACATATTTCTCTTTTCTTTCACATAAAAAACAATAATTTTGTTACATGAAACAAACACTGGCACCGTCGTGTTTTAAAAGGTGATTGTAAGCATTAAGATCCTTGTTAGTGCATATAATTGTAATTAAATTCAACACATCTTATCTTAATCATGGTTGCGTTTGTGTTTCAATTTTGAAAACATCAAAAATTGGTGTATATTTAGTCCATAAATGATGTTGAAAGAAATCAATAAATGATGTTGCAGGAGCTATTACAAATGTAGCACTTGGTCTGATTGTCCAGCAAGAAGAAAGGTTGAAAAATGCAAAACTCAAGAGAACACTTATATTGTAACATATGAAGGAGAGCACAATCATGCAAAGCCAACATTTAATAAGAATGTTGTTGTTGGTACATCCCAGCGCAAGTCACTGGAGACTGGGTTACACTCTGCGGAAGAAACTGGATCATCTACAATACAAACATCACAAATCCAGGTTCCCCTAGTATGGTGATGTTGCAGATCGATCATCCGGAGAGCAGCAATACCCAGGTTCTCGCTGATCAATCAAAAATCCTTTATCCGGAAATGGAACTATTAGAGAGTCAATTACCTGTTGTCGAAGAAGTTGGATCATCCTCAAATTTTAGAAACCTGGGTTCACATAACAAAATGATTATGCAATTTGATGAACCACAAAGTAGCAATGTTACAGGTGTTGTCGGGGACTCAAACCTCCCTTATTCTGAAACTGGACTCATTGGAAGCTTTGATGATAATGATGACATTTTGATAACAAACATAACAGCTTGGTCAGAAGATTATTTAATGGACTTCAACCGCCTCAATGGTGGTGCTATATTCCCTTAG
Protein sequence

>MS.gene28280.t1

MDNDDRDLFSIVRSCNATTFTTPTTIINPPPPQIETTTNNITFPQSVTPFCSDNLTFNQENSPVSFAPLKPNDFIDLDKLMINFNPIPTPATTSMPKFNTTTTSSPTTTSTTNTISSPLTTTIPTHTTNINTSVHVIHTPTITTPTTPSTITPIITATTTTIITPTTTTPITSVASTSMTNTSVHETNQYPTNYNFRILAGQQQIQQNINNQVSVPKPVACIDITPTHFECAYNHPSAITPTTTTPIISATSTAMTKTSVHETNQYLTKYNFPILAGQQQIQQNINNQASVPKPVACIDITTAHFERAYNHPSVALCRSRKRKHNNQMALMCYMREDELSKDSWAWRKYGQKAIKGSPHPRSYYKCSTWSDCPARRKVEKCKTQENTYIVTYEGEHNHAKPTFNKNVVVGSPSMVMLQIDHPESSNTQVLADQSKILYPEMELLESQLPVVEEVGSSSNFRNLGSHNKMIMQFDEPQSSNVTGVVGDSNLPYSETGLIGSFDDNDDILITNITAWSEDYLMDFNRLNGGAIFP