Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28309.t1 | XP_003606840.1 | 85.9 | 149 | 19 | 1 | 1 | 147 | 1 | 149 | 9.80E-55 | 223.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28309.t1 | Q1PES7 | 31.6 | 95 | 63 | 1 | 9 | 103 | 8 | 100 | 4.8e-10 | 66.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28309.t1 | G7JEX9 | 85.9 | 149 | 19 | 1 | 1 | 147 | 1 | 149 | 7.1e-55 | 223.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene28309.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28309.t1 | MTR_4g068300 | 84.364 | 275 | 39 | 2 | 1 | 273 | 1 | 273 | 3.26e-152 | 426 |
MS.gene28309.t1 | MTR_4g068310 | 58.537 | 205 | 65 | 8 | 1 | 202 | 1 | 188 | 3.39e-66 | 205 |
MS.gene28309.t1 | MTR_1g021270 | 32.673 | 101 | 66 | 1 | 8 | 108 | 13 | 111 | 5.01e-15 | 75.1 |
MS.gene28309.t1 | MTR_3g005480 | 28.972 | 214 | 132 | 9 | 13 | 222 | 24 | 221 | 2.60e-13 | 68.6 |
MS.gene28309.t1 | MTR_1g021440 | 33.981 | 103 | 65 | 2 | 23 | 124 | 35 | 135 | 2.53e-12 | 66.2 |
MS.gene28309.t1 | MTR_1g021440 | 33.981 | 103 | 65 | 2 | 23 | 124 | 35 | 135 | 2.59e-12 | 65.9 |
MS.gene28309.t1 | MTR_1g021440 | 33.981 | 103 | 65 | 2 | 23 | 124 | 35 | 135 | 6.07e-12 | 65.5 |
MS.gene28309.t1 | MTR_1g021440 | 33.981 | 103 | 65 | 2 | 23 | 124 | 35 | 135 | 6.12e-12 | 65.5 |
MS.gene28309.t1 | MTR_1g021350 | 34.524 | 84 | 53 | 1 | 23 | 106 | 34 | 115 | 4.92e-11 | 62.8 |
MS.gene28309.t1 | MTR_1g021400 | 28.249 | 177 | 107 | 4 | 23 | 181 | 43 | 217 | 5.36e-11 | 62.8 |
MS.gene28309.t1 | MTR_7g050710 | 35.714 | 98 | 60 | 2 | 11 | 107 | 13 | 108 | 6.06e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28309.t1 | AT3G06220 | 29.565 | 115 | 77 | 2 | 9 | 123 | 8 | 118 | 2.49e-13 | 67.0 |
Find 45 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTCTTGGCCGCGATTAT+TGG | 0.150855 | 4.4:+38964352 | None:intergenic |
AGTGATGCTTGAAGAGTTAT+TGG | 0.212786 | 4.4:-38964503 | MS.gene28309:CDS |
TGCAGCAACAATCATGTCTA+TGG | 0.232377 | 4.4:-38964173 | MS.gene28309:CDS |
ATTATTCTGGTAGGCTCTTC+TGG | 0.236095 | 4.4:-38964610 | MS.gene28309:CDS |
ACAAGAGATTGTTAAGGATT+TGG | 0.243204 | 4.4:-38964659 | MS.gene28309:CDS |
CATCAATGTTGCTGCAGCTT+TGG | 0.244862 | 4.4:+38964096 | None:intergenic |
AATGACATTTATCTGCAAAT+TGG | 0.269252 | 4.4:-38964553 | MS.gene28309:CDS |
CAAGAGATTGTTAAGGATTT+GGG | 0.277836 | 4.4:-38964658 | MS.gene28309:CDS |
GAAGAATGCATTAATTATTC+TGG | 0.319956 | 4.4:-38964623 | MS.gene28309:CDS |
TTCTTTGATGATTGCGAAGA+AGG | 0.373079 | 4.4:+38965291 | None:intergenic |
CAAAGCTGCAGCAACATTGA+TGG | 0.380913 | 4.4:-38964095 | MS.gene28309:CDS |
TAATGGGGAGAACAAGTTCC+AGG | 0.400809 | 4.4:-38964470 | MS.gene28309:CDS |
CTGGTGAGAGAGTATGCTTC+AGG | 0.408630 | 4.4:-38964210 | MS.gene28309:CDS |
TTCTTAAAGCACTCACTCTC+AGG | 0.419431 | 4.4:+38964301 | None:intergenic |
TAGGCTCTTCTGGTGAGAAA+TGG | 0.425803 | 4.4:-38964600 | MS.gene28309:CDS |
TGGTCTACCCCTCTTTCTCT+TGG | 0.432293 | 4.4:+38964339 | None:intergenic |
GAGAAAATCCTGCTGGTGAG+AGG | 0.446423 | 4.4:-38964048 | MS.gene28309:CDS |
AGGATTTGGGTGAAGAGTTG+TGG | 0.456368 | 4.4:-38964645 | MS.gene28309:CDS |
CAGTTAACTAAAATAACAAC+TGG | 0.461802 | 4.4:+38963941 | None:intergenic |
AGGCTCTTCTGGTGAGAAAT+GGG | 0.468490 | 4.4:-38964599 | MS.gene28309:CDS |
ACATTTATCTGCAAATTGGT+TGG | 0.488288 | 4.4:-38964549 | MS.gene28309:CDS |
TTCTTCGCAATCATCAAAGA+AGG | 0.488553 | 4.4:-38965289 | MS.gene28309:CDS |
ATTGTGGTTAAGAGAAATGA+TGG | 0.499727 | 4.4:-38964253 | MS.gene28309:CDS |
TCTTGTACATTCTTGAAGCA+TGG | 0.500756 | 4.4:+38964415 | None:intergenic |
AGTACCACAAGAGATTGTTA+AGG | 0.512474 | 4.4:-38964665 | MS.gene28309:CDS |
CGAAGAAGGATGGTTTGTCT+TGG | 0.520720 | 4.4:+38965305 | None:intergenic |
TTGATGATTGCGAAGAAGGA+TGG | 0.531272 | 4.4:+38965295 | None:intergenic |
ATGCATACCCTCTCACCAGC+AGG | 0.531521 | 4.4:+38964040 | None:intergenic |
TAATCGCGGCCAAGAGAAAG+AGG | 0.543608 | 4.4:-38964348 | MS.gene28309:CDS |
ACTAAAATAACAACTGGAGC+AGG | 0.545360 | 4.4:+38963947 | None:intergenic |
AATCGTGGCTGAGAGAAAGA+AGG | 0.556974 | 4.4:-38963987 | MS.gene28309:CDS |
GCAGCAACAATCATGTCTAT+GGG | 0.564847 | 4.4:-38964172 | MS.gene28309:CDS |
AGGCTTGAACATCAACCGCC+TGG | 0.566829 | 4.4:-38965269 | MS.gene28309:intron |
AATGCATTAATTATTCTGGT+AGG | 0.572311 | 4.4:-38964619 | MS.gene28309:CDS |
AAGCATACTCTCTCACCAGC+AGG | 0.573273 | 4.4:+38964214 | None:intergenic |
TGCAGCAGCTCCAATAATCG+CGG | 0.576668 | 4.4:-38964362 | MS.gene28309:CDS |
AGAAAATCCTGCTGGTGAGA+GGG | 0.595818 | 4.4:-38964047 | MS.gene28309:CDS |
ATTGATGGCTGCGATAAACA+AGG | 0.598401 | 4.4:-38964080 | MS.gene28309:CDS |
AGAACAAGAGAAAATCCTGC+TGG | 0.600152 | 4.4:-38964055 | MS.gene28309:CDS |
AATCGCGGCCAAGAGAAAGA+GGG | 0.619676 | 4.4:-38964347 | MS.gene28309:CDS |
ATCGTGGCTGAGAGAAAGAA+GGG | 0.634544 | 4.4:-38963986 | MS.gene28309:CDS |
AAATCCTTAACAATCTCTTG+TGG | 0.638832 | 4.4:+38964661 | None:intergenic |
ATCGCGGCCAAGAGAAAGAG+GGG | 0.679157 | 4.4:-38964346 | MS.gene28309:CDS |
AAAATCTGCAGAAACAATCG+TGG | 0.680787 | 4.4:-38964002 | MS.gene28309:CDS |
TTGATGGCTGCGATAAACAA+GGG | 0.688503 | 4.4:-38964079 | MS.gene28309:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTGTTTCTTATTATTAACA+AGG | + | chr4.4:38964091-38964110 | None:intergenic | 20.0% |
!!! | TATTGGTTTTCACATATAAT+GGG | - | chr4.4:38964773-38964792 | MS.gene28309:intron | 20.0% |
!!! | TGAAAAGTGAGTTTTTTTAA+AGG | - | chr4.4:38964153-38964172 | MS.gene28309:CDS | 20.0% |
!!! | TTATTGGTTTTCACATATAA+TGG | - | chr4.4:38964772-38964791 | MS.gene28309:intron | 20.0% |
!!! | TTTTAGTTATACATAGACAT+AGG | - | chr4.4:38964310-38964329 | MS.gene28309:CDS | 20.0% |
! | AATGACATTTATCTGCAAAT+TGG | - | chr4.4:38964706-38964725 | MS.gene28309:intron | 25.0% |
! | AATGCATTAATTATTCTGGT+AGG | - | chr4.4:38964640-38964659 | MS.gene28309:CDS | 25.0% |
! | AGTACGAATAAATTATTACC+AGG | + | chr4.4:38964011-38964030 | None:intergenic | 25.0% |
! | CAGTTAACTAAAATAACAAC+TGG | + | chr4.4:38965321-38965340 | None:intergenic | 25.0% |
! | GAAGAATGCATTAATTATTC+TGG | - | chr4.4:38964636-38964655 | MS.gene28309:CDS | 25.0% |
! | GACGATGAAAACTAAATTAT+AGG | - | chr4.4:38964128-38964147 | MS.gene28309:CDS | 25.0% |
! | TTATCTACTAGAGACAAATT+GGG | - | chr4.4:38964271-38964290 | MS.gene28309:CDS | 25.0% |
! | TTTATCTACTAGAGACAAAT+TGG | - | chr4.4:38964270-38964289 | MS.gene28309:CDS | 25.0% |
! | TTTGTCTCTAGTAGATAAAT+CGG | + | chr4.4:38964269-38964288 | None:intergenic | 25.0% |
!! | TAAGAAACACTTTGTTTCTT+TGG | - | chr4.4:38964100-38964119 | MS.gene28309:CDS | 25.0% |
!!! | AATTTTTGGTAAGAATGGAT+TGG | - | chr4.4:38964816-38964835 | MS.gene28309:intron | 25.0% |
!!! | ATTGGTTTTCACATATAATG+GGG | - | chr4.4:38964774-38964793 | MS.gene28309:intron | 25.0% |
AAATCCTTAACAATCTCTTG+TGG | + | chr4.4:38964601-38964620 | None:intergenic | 30.0% | |
AACAGAAAAATTACCAAGCT+TGG | + | chr4.4:38964421-38964440 | None:intergenic | 30.0% | |
ACAAGAGATTGTTAAGGATT+TGG | - | chr4.4:38964600-38964619 | MS.gene28309:CDS | 30.0% | |
ACATTTATCTGCAAATTGGT+TGG | - | chr4.4:38964710-38964729 | MS.gene28309:intron | 30.0% | |
ACGAATAAATTATTACCAGG+CGG | + | chr4.4:38964008-38964027 | None:intergenic | 30.0% | |
ATTGTGGTTAAGAGAAATGA+TGG | - | chr4.4:38965006-38965025 | MS.gene28309:intron | 30.0% | |
CAAGAGATTGTTAAGGATTT+GGG | - | chr4.4:38964601-38964620 | MS.gene28309:CDS | 30.0% | |
TGAAGTTGCAGAAAAAATTG+TGG | - | chr4.4:38964990-38965009 | MS.gene28309:intron | 30.0% | |
TTAGACTATTTGATCTCGAT+TGG | - | chr4.4:38964440-38964459 | MS.gene28309:CDS | 30.0% | |
!! | GAAGTGAGTATTTTGAAGAA+AGG | - | chr4.4:38964682-38964701 | MS.gene28309:intron | 30.0% |
!!! | GTCAAGCTACTATGTTTTTT+TGG | - | chr4.4:38964556-38964575 | MS.gene28309:CDS | 30.0% |
!!! | GTGCAAATTTTTGGTAAGAA+TGG | - | chr4.4:38964811-38964830 | MS.gene28309:intron | 30.0% |
!!! | TGACGAACATGATTTTTTCT+TGG | + | chr4.4:38965117-38965136 | None:intergenic | 30.0% |
AAAATCTGCAGAAACAATCG+TGG | - | chr4.4:38965257-38965276 | MS.gene28309:intron | 35.0% | |
AAAATTACCAAGCTTGGATC+TGG | + | chr4.4:38964415-38964434 | None:intergenic | 35.0% | |
ACATGTTATGCATATGAAGC+TGG | + | chr4.4:38964507-38964526 | None:intergenic | 35.0% | |
ACTAAAATAACAACTGGAGC+AGG | + | chr4.4:38965315-38965334 | None:intergenic | 35.0% | |
ACTATTTGATCTCGATTGGA+AGG | - | chr4.4:38964444-38964463 | MS.gene28309:CDS | 35.0% | |
AGTACCACAAGAGATTGTTA+AGG | - | chr4.4:38964594-38964613 | MS.gene28309:CDS | 35.0% | |
AGTGATGCTTGAAGAGTTAT+TGG | - | chr4.4:38964756-38964775 | MS.gene28309:intron | 35.0% | |
ATGCACACATTCATGAAGTT+TGG | - | chr4.4:38964358-38964377 | MS.gene28309:CDS | 35.0% | |
TCTTACCAAAAATTTGCACC+TGG | + | chr4.4:38964810-38964829 | None:intergenic | 35.0% | |
TCTTGTACATTCTTGAAGCA+TGG | + | chr4.4:38964847-38964866 | None:intergenic | 35.0% | |
TTCTTCGCAATCATCAAAGA+AGG | - | chr4.4:38963970-38963989 | MS.gene28309:CDS | 35.0% | |
! | AAGTTCCAGGTGCAAATTTT+TGG | - | chr4.4:38964802-38964821 | MS.gene28309:intron | 35.0% |
! | TCAGGAGAAAGAACTTTTCT+TGG | + | chr4.4:38964943-38964962 | None:intergenic | 35.0% |
! | TTCTTTGATGATTGCGAAGA+AGG | + | chr4.4:38963971-38963990 | None:intergenic | 35.0% |
AGAACAAGAAAAAGTCCTGC+TGG | - | chr4.4:38965030-38965049 | MS.gene28309:intron | 40.0% | |
AGAACAAGAGAAAATCCTGC+TGG | - | chr4.4:38965204-38965223 | MS.gene28309:intron | 40.0% | |
ATAAATCGGCTGTTGAGCTA+AGG | + | chr4.4:38964255-38964274 | None:intergenic | 40.0% | |
ATAGGAACCTGTATTCCCTT+TGG | - | chr4.4:38964328-38964347 | MS.gene28309:CDS | 40.0% | |
ATTATTCTGGTAGGCTCTTC+TGG | - | chr4.4:38964649-38964668 | MS.gene28309:CDS | 40.0% | |
GCAGCAACAATCATGTCTAT+GGG | - | chr4.4:38965087-38965106 | MS.gene28309:intron | 40.0% | |
GCATGAGATGATGATCATGT+GGG | + | chr4.4:38964051-38964070 | None:intergenic | 40.0% | |
TGATCTCGATTGGAAGGTTA+CGG | - | chr4.4:38964450-38964469 | MS.gene28309:CDS | 40.0% | |
TGCAGCAACAATCATGTCTA+TGG | - | chr4.4:38965086-38965105 | MS.gene28309:intron | 40.0% | |
TGCATGAGATGATGATCATG+TGG | + | chr4.4:38964052-38964071 | None:intergenic | 40.0% | |
! | ACTGGAGCAGGATATTTTCT+TGG | + | chr4.4:38965303-38965322 | None:intergenic | 40.0% |
! | ATTGATGGCTGCGATAAACA+AGG | - | chr4.4:38965179-38965198 | MS.gene28309:intron | 40.0% |
! | TTCTTAAAGCACTCACTCTC+AGG | + | chr4.4:38964961-38964980 | None:intergenic | 40.0% |
! | TTGATGATTGCGAAGAAGGA+TGG | + | chr4.4:38963967-38963986 | None:intergenic | 40.0% |
! | TTGATGGCTGCGATAAACAA+GGG | - | chr4.4:38965180-38965199 | MS.gene28309:intron | 40.0% |
AATCGTGGCTGAGAGAAAGA+AGG | - | chr4.4:38965272-38965291 | MS.gene28309:CDS | 45.0% | |
AGAAAATCCTGCTGGTGAGA+GGG | - | chr4.4:38965212-38965231 | MS.gene28309:intron | 45.0% | |
AGGATTTGGGTGAAGAGTTG+TGG | - | chr4.4:38964614-38964633 | MS.gene28309:CDS | 45.0% | |
AGGCTCTTCTGGTGAGAAAT+GGG | - | chr4.4:38964660-38964679 | MS.gene28309:CDS | 45.0% | |
ATCCATGACCGTCCGAAAAA+TGG | - | chr4.4:38964383-38964402 | MS.gene28309:CDS | 45.0% | |
ATCGTGGCTGAGAGAAAGAA+GGG | - | chr4.4:38965273-38965292 | MS.gene28309:CDS | 45.0% | |
CAAAGCTGCAGCAACATTGA+TGG | - | chr4.4:38965164-38965183 | MS.gene28309:intron | 45.0% | |
CATCAATGTTGCTGCAGCTT+TGG | + | chr4.4:38965166-38965185 | None:intergenic | 45.0% | |
GTGTGCATTCAGTGACCAAA+GGG | + | chr4.4:38964346-38964365 | None:intergenic | 45.0% | |
TAATGGGGAGAACAAGTTCC+AGG | - | chr4.4:38964789-38964808 | MS.gene28309:intron | 45.0% | |
TAGGCTCTTCTGGTGAGAAA+TGG | - | chr4.4:38964659-38964678 | MS.gene28309:CDS | 45.0% | |
TCAGTGACCAAAGGGAATAC+AGG | + | chr4.4:38964338-38964357 | None:intergenic | 45.0% | |
TCCATGACCGTCCGAAAAAT+GGG | - | chr4.4:38964384-38964403 | MS.gene28309:CDS | 45.0% | |
TGCAAGCATTCACAAAGCCA+GGG | + | chr4.4:38964479-38964498 | None:intergenic | 45.0% | |
TGTGTGCATTCAGTGACCAA+AGG | + | chr4.4:38964347-38964366 | None:intergenic | 45.0% | |
TTTCTCTTGGCCGCGATTAT+TGG | + | chr4.4:38964910-38964929 | None:intergenic | 45.0% | |
! | CGAAGAAGGATGGTTTGTCT+TGG | + | chr4.4:38963957-38963976 | None:intergenic | 45.0% |
!! | ATCTGGACCACCCCATTTTT+CGG | + | chr4.4:38964398-38964417 | None:intergenic | 45.0% |
!! | TGGCTTTGTGAATGCTTGCA+GGG | - | chr4.4:38964479-38964498 | MS.gene28309:CDS | 45.0% |
AAGCATACTCTCTCACCAGC+AGG | + | chr4.4:38965048-38965067 | None:intergenic | 50.0% | |
AATCGCGGCCAAGAGAAAGA+GGG | - | chr4.4:38964912-38964931 | MS.gene28309:intron | 50.0% | |
CCATGACCGTCCGAAAAATG+GGG | - | chr4.4:38964385-38964404 | MS.gene28309:CDS | 50.0% | |
CTGCAAGCATTCACAAAGCC+AGG | + | chr4.4:38964480-38964499 | None:intergenic | 50.0% | |
GAGAAAATCCTGCTGGTGAG+AGG | - | chr4.4:38965211-38965230 | MS.gene28309:intron | 50.0% | |
GCAAGCATTCACAAAGCCAG+GGG | + | chr4.4:38964478-38964497 | None:intergenic | 50.0% | |
TAATCGCGGCCAAGAGAAAG+AGG | - | chr4.4:38964911-38964930 | MS.gene28309:intron | 50.0% | |
TGCAGCAGCTCCAATAATCG+CGG | - | chr4.4:38964897-38964916 | MS.gene28309:intron | 50.0% | |
TGGTCTACCCCTCTTTCTCT+TGG | + | chr4.4:38964923-38964942 | None:intergenic | 50.0% | |
! | CTGGTGAGAGAGTATGCTTC+AGG | - | chr4.4:38965049-38965068 | MS.gene28309:intron | 50.0% |
!! | CTGGCTTTGTGAATGCTTGC+AGG | - | chr4.4:38964478-38964497 | MS.gene28309:CDS | 50.0% |
AGGCTTGAACATCAACCGCC+TGG | - | chr4.4:38963990-38964009 | MS.gene28309:CDS | 55.0% | |
ATCGCGGCCAAGAGAAAGAG+GGG | - | chr4.4:38964913-38964932 | MS.gene28309:intron | 55.0% | |
ATGCATACCCTCTCACCAGC+AGG | + | chr4.4:38965222-38965241 | None:intergenic | 55.0% | |
TGACCGTCCGAAAAATGGGG+TGG | - | chr4.4:38964388-38964407 | MS.gene28309:CDS | 55.0% | |
TTGGAAGGTTACGGATCCCC+TGG | - | chr4.4:38964459-38964478 | MS.gene28309:CDS | 55.0% | |
!! | CCCCATTTTTCGGACGGTCA+TGG | + | chr4.4:38964388-38964407 | None:intergenic | 55.0% |
!! | GGACCACCCCATTTTTCGGA+CGG | + | chr4.4:38964394-38964413 | None:intergenic | 55.0% |
GGGTGGTCCAGATCCAAGCT+TGG | - | chr4.4:38964405-38964424 | MS.gene28309:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 38963940 | 38965341 | 38963940 | ID=MS.gene28309 |
chr4.4 | mRNA | 38963940 | 38965341 | 38963940 | ID=MS.gene28309.t1;Parent=MS.gene28309 |
chr4.4 | exon | 38965270 | 38965341 | 38965270 | ID=MS.gene28309.t1.exon1;Parent=MS.gene28309.t1 |
chr4.4 | CDS | 38965270 | 38965341 | 38965270 | ID=cds.MS.gene28309.t1;Parent=MS.gene28309.t1 |
chr4.4 | exon | 38963940 | 38964689 | 38963940 | ID=MS.gene28309.t1.exon2;Parent=MS.gene28309.t1 |
chr4.4 | CDS | 38963940 | 38964689 | 38963940 | ID=cds.MS.gene28309.t1;Parent=MS.gene28309.t1 |
Gene Sequence |
Protein sequence |