Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28337.t1 | KEH30332.1 | 96.2 | 237 | 8 | 1 | 1 | 236 | 61 | 297 | 2.20E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28337.t1 | Q9SZL8 | 54.6 | 108 | 45 | 2 | 54 | 157 | 72 | 179 | 3.3e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28337.t1 | A0A072UKW2 | 96.2 | 237 | 8 | 1 | 1 | 236 | 61 | 297 | 1.6e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28337.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28337.t1 | MTR_4g067290 | 96.203 | 237 | 8 | 1 | 1 | 236 | 1 | 237 | 3.97e-170 | 468 |
| MS.gene28337.t1 | MTR_4g067290 | 96.203 | 237 | 8 | 1 | 1 | 236 | 21 | 257 | 5.92e-170 | 468 |
| MS.gene28337.t1 | MTR_4g067290 | 96.203 | 237 | 8 | 1 | 1 | 236 | 61 | 297 | 2.61e-169 | 468 |
| MS.gene28337.t1 | MTR_4g067290 | 95.359 | 237 | 8 | 2 | 1 | 236 | 1 | 235 | 3.39e-158 | 438 |
| MS.gene28337.t1 | MTR_4g067290 | 95.359 | 237 | 8 | 2 | 1 | 236 | 21 | 255 | 7.97e-158 | 437 |
| MS.gene28337.t1 | MTR_4g067290 | 95.359 | 237 | 8 | 2 | 1 | 236 | 19 | 253 | 9.03e-158 | 437 |
| MS.gene28337.t1 | MTR_2g098920 | 67.382 | 233 | 70 | 5 | 3 | 232 | 27 | 256 | 1.18e-107 | 311 |
| MS.gene28337.t1 | MTR_3g006370 | 43.684 | 190 | 97 | 3 | 49 | 234 | 44 | 227 | 4.18e-44 | 148 |
| MS.gene28337.t1 | MTR_2g098880 | 36.923 | 195 | 105 | 6 | 47 | 227 | 53 | 243 | 4.45e-35 | 125 |
| MS.gene28337.t1 | MTR_2g098880 | 36.923 | 195 | 105 | 6 | 47 | 227 | 65 | 255 | 7.99e-35 | 125 |
| MS.gene28337.t1 | MTR_5g015480 | 42.593 | 108 | 56 | 3 | 55 | 158 | 56 | 161 | 1.38e-18 | 82.4 |
| MS.gene28337.t1 | MTR_1g057920 | 45.652 | 92 | 44 | 3 | 55 | 142 | 34 | 123 | 1.38e-16 | 73.9 |
| MS.gene28337.t1 | MTR_0402s0040 | 41.121 | 107 | 57 | 3 | 55 | 157 | 26 | 130 | 1.88e-15 | 75.5 |
| MS.gene28337.t1 | MTR_2g070590 | 37.864 | 103 | 62 | 2 | 55 | 155 | 17 | 119 | 2.29e-13 | 65.1 |
| MS.gene28337.t1 | MTR_6g017200 | 38.776 | 98 | 54 | 3 | 55 | 148 | 58 | 153 | 1.00e-12 | 64.3 |
| MS.gene28337.t1 | MTR_7g113010 | 33.835 | 133 | 62 | 5 | 55 | 177 | 457 | 573 | 8.17e-12 | 64.7 |
| MS.gene28337.t1 | MTR_1g070355 | 31.126 | 151 | 91 | 7 | 16 | 155 | 29 | 177 | 2.14e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28337.t1 | AT3G59470 | 59.740 | 231 | 81 | 4 | 15 | 236 | 22 | 249 | 4.01e-95 | 279 |
| MS.gene28337.t1 | AT3G59470 | 59.740 | 231 | 81 | 4 | 15 | 236 | 22 | 249 | 4.01e-95 | 279 |
| MS.gene28337.t1 | AT3G59470 | 59.740 | 231 | 81 | 4 | 15 | 236 | 34 | 261 | 9.26e-95 | 278 |
| MS.gene28337.t1 | AT3G07500 | 43.503 | 177 | 97 | 3 | 54 | 227 | 32 | 208 | 1.84e-44 | 149 |
| MS.gene28337.t1 | AT2G43280 | 38.571 | 210 | 105 | 5 | 23 | 227 | 2 | 192 | 1.01e-37 | 131 |
| MS.gene28337.t1 | AT4G12850 | 36.264 | 182 | 108 | 3 | 49 | 229 | 5 | 179 | 4.57e-33 | 118 |
| MS.gene28337.t1 | AT2G43280 | 39.759 | 166 | 88 | 4 | 70 | 230 | 2 | 160 | 2.69e-31 | 113 |
| MS.gene28337.t1 | AT4G12850 | 41.463 | 123 | 69 | 2 | 49 | 170 | 5 | 125 | 3.05e-25 | 97.1 |
| MS.gene28337.t1 | AT4G38180 | 54.630 | 108 | 45 | 2 | 54 | 157 | 72 | 179 | 8.38e-25 | 102 |
| MS.gene28337.t1 | AT4G12850 | 42.056 | 107 | 60 | 1 | 49 | 155 | 5 | 109 | 4.83e-24 | 94.0 |
| MS.gene28337.t1 | AT5G18960 | 36.620 | 142 | 64 | 2 | 15 | 156 | 17 | 132 | 6.72e-23 | 97.4 |
| MS.gene28337.t1 | AT5G18960 | 37.963 | 108 | 55 | 1 | 51 | 158 | 207 | 302 | 3.45e-20 | 89.4 |
| MS.gene28337.t1 | AT5G18960 | 36.620 | 142 | 64 | 2 | 15 | 156 | 17 | 132 | 6.72e-23 | 97.4 |
| MS.gene28337.t1 | AT5G18960 | 37.963 | 108 | 55 | 1 | 51 | 158 | 207 | 302 | 3.45e-20 | 89.4 |
| MS.gene28337.t1 | AT3G06250 | 38.793 | 116 | 59 | 1 | 52 | 167 | 187 | 290 | 2.20e-21 | 92.8 |
| MS.gene28337.t1 | AT3G06250 | 40.566 | 106 | 51 | 1 | 51 | 156 | 24 | 117 | 8.61e-21 | 91.3 |
| MS.gene28337.t1 | AT3G06250 | 38.793 | 116 | 59 | 1 | 52 | 167 | 187 | 290 | 2.20e-21 | 92.8 |
| MS.gene28337.t1 | AT3G06250 | 40.566 | 106 | 51 | 1 | 51 | 156 | 24 | 117 | 8.61e-21 | 91.3 |
| MS.gene28337.t1 | AT3G06250 | 38.793 | 116 | 59 | 1 | 52 | 167 | 187 | 290 | 2.20e-21 | 92.8 |
| MS.gene28337.t1 | AT3G06250 | 40.566 | 106 | 51 | 1 | 51 | 156 | 24 | 117 | 8.61e-21 | 91.3 |
| MS.gene28337.t1 | AT1G52520 | 38.835 | 103 | 60 | 1 | 53 | 155 | 83 | 182 | 6.83e-18 | 82.8 |
| MS.gene28337.t1 | AT1G80010 | 37.736 | 106 | 63 | 1 | 52 | 157 | 92 | 194 | 1.43e-16 | 79.0 |
| MS.gene28337.t1 | AT2G32250 | 38.182 | 110 | 62 | 2 | 50 | 157 | 33 | 138 | 4.27e-15 | 74.3 |
| MS.gene28337.t1 | AT2G32250 | 38.182 | 110 | 62 | 2 | 50 | 157 | 33 | 138 | 4.50e-15 | 74.3 |
| MS.gene28337.t1 | AT2G32250 | 38.182 | 110 | 62 | 2 | 50 | 157 | 33 | 138 | 4.50e-15 | 74.3 |
| MS.gene28337.t1 | AT2G32250 | 38.182 | 110 | 62 | 2 | 50 | 157 | 33 | 138 | 4.50e-15 | 74.3 |
| MS.gene28337.t1 | AT2G32250 | 38.182 | 110 | 62 | 2 | 50 | 157 | 33 | 138 | 4.67e-15 | 74.3 |
| MS.gene28337.t1 | AT2G32250 | 38.182 | 110 | 62 | 2 | 50 | 157 | 33 | 138 | 4.67e-15 | 74.3 |
| MS.gene28337.t1 | AT4G19990 | 28.966 | 145 | 75 | 2 | 58 | 188 | 24 | 154 | 1.28e-14 | 73.2 |
| MS.gene28337.t1 | AT4G19990 | 28.966 | 145 | 75 | 2 | 58 | 188 | 24 | 154 | 1.28e-14 | 73.2 |
| MS.gene28337.t1 | AT4G19990 | 28.966 | 145 | 75 | 2 | 58 | 188 | 24 | 154 | 1.46e-14 | 72.8 |
| MS.gene28337.t1 | AT4G19990 | 28.966 | 145 | 75 | 2 | 58 | 188 | 24 | 154 | 1.46e-14 | 72.8 |
| MS.gene28337.t1 | AT4G19990 | 28.966 | 145 | 75 | 2 | 58 | 188 | 38 | 168 | 1.47e-14 | 72.8 |
| MS.gene28337.t1 | AT4G19990 | 28.966 | 145 | 75 | 2 | 58 | 188 | 24 | 154 | 1.51e-14 | 72.8 |
| MS.gene28337.t1 | AT2G32250 | 39.000 | 100 | 55 | 2 | 60 | 157 | 2 | 97 | 4.19e-14 | 71.6 |
| MS.gene28337.t1 | AT2G32250 | 39.000 | 100 | 55 | 2 | 60 | 157 | 2 | 97 | 4.51e-14 | 71.6 |
| MS.gene28337.t1 | AT3G22170 | 29.752 | 121 | 71 | 2 | 54 | 160 | 69 | 189 | 2.96e-11 | 63.2 |
| MS.gene28337.t1 | AT3G22170 | 29.752 | 121 | 71 | 2 | 54 | 160 | 69 | 189 | 2.96e-11 | 63.2 |
| MS.gene28337.t1 | AT2G27110 | 39.216 | 102 | 48 | 3 | 54 | 155 | 48 | 135 | 9.62e-11 | 61.6 |
| MS.gene28337.t1 | AT2G27110 | 39.216 | 102 | 48 | 3 | 54 | 155 | 48 | 135 | 9.62e-11 | 61.6 |
| MS.gene28337.t1 | AT1G76320 | 36.000 | 100 | 58 | 3 | 60 | 157 | 2 | 97 | 9.72e-11 | 61.6 |
| MS.gene28337.t1 | AT1G76320 | 36.000 | 100 | 58 | 3 | 60 | 157 | 2 | 97 | 9.91e-11 | 61.6 |
| MS.gene28337.t1 | AT1G76320 | 36.000 | 100 | 58 | 3 | 60 | 157 | 2 | 97 | 9.91e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATTAATTCTGGTAAA+TGG | 0.122359 | 4.4:+39205636 | MS.gene28337:CDS |
| TTATGTTCTTCTTCTTCTTT+AGG | 0.197944 | 4.4:-39206539 | None:intergenic |
| CAGAAACAAGGGTTGGTTGC+AGG | 0.300475 | 4.4:+39205597 | MS.gene28337:CDS |
| GAAAATTAATTCTGGTAAAT+GGG | 0.333770 | 4.4:+39205637 | MS.gene28337:CDS |
| ATGATGAGGAAAATTAATTC+TGG | 0.337234 | 4.4:+39205629 | MS.gene28337:CDS |
| ATATCCTTTCTACTACTTCC+AGG | 0.355137 | 4.4:-39205701 | None:intergenic |
| AGGAAAGACGGAACTGCTAT+TGG | 0.388968 | 4.4:+39205503 | MS.gene28337:CDS |
| AACGTGACTCAAGATTCTTC+TGG | 0.391633 | 4.4:+39205314 | MS.gene28337:CDS |
| CTTGAGTCACGTTATCATCT+TGG | 0.395456 | 4.4:-39205304 | None:intergenic |
| TCTTGGTCTTGTTTGTAAGA+TGG | 0.422563 | 4.4:-39205287 | None:intergenic |
| TCTACTACTTCCAGGATTCA+AGG | 0.432111 | 4.4:-39205693 | None:intergenic |
| GGATATGTTTGAAATTTATC+CGG | 0.433360 | 4.4:+39205718 | MS.gene28337:CDS |
| TGAGGAGCCCTATGTGGGTC+AGG | 0.445713 | 4.4:+39205388 | MS.gene28337:CDS |
| TCTTCTTCTATGTATTCCTC+AGG | 0.455153 | 4.4:-39205254 | None:intergenic |
| TAAGCAAGCTCTCACGATCA+AGG | 0.471737 | 4.4:+39205483 | MS.gene28337:CDS |
| CACACACATCCCTTGAATCC+TGG | 0.472295 | 4.4:+39205683 | MS.gene28337:CDS |
| GGCTCCTCAGCAGAAGCGTC+TGG | 0.483303 | 4.4:-39205374 | None:intergenic |
| TTCTGCTGAGGAGCCCTATG+TGG | 0.483552 | 4.4:+39205382 | MS.gene28337:CDS |
| CCAACTGCTGAGATAGTTCG+CGG | 0.495662 | 4.4:-39206388 | None:intergenic |
| CTACTACTTCCAGGATTCAA+GGG | 0.508347 | 4.4:-39205692 | None:intergenic |
| AGAAACAAGGGTTGGTTGCA+GGG | 0.508414 | 4.4:+39205598 | MS.gene28337:CDS |
| GGTAGTGTGGGAACTGCAGC+GGG | 0.515950 | 4.4:-39205353 | None:intergenic |
| GGTTATTACGAAGTTTGTAA+AGG | 0.521568 | 4.4:+39205658 | MS.gene28337:CDS |
| AGCAGAAGCGTCTGGTAGTG+TGG | 0.524624 | 4.4:-39205366 | None:intergenic |
| AATGCATACGCAGCCGAGGT+TGG | 0.541461 | 4.4:+39205446 | MS.gene28337:CDS |
| CGAAAAGATTGTGAGGCAAA+GGG | 0.544339 | 4.4:+39205574 | MS.gene28337:CDS |
| GCGAAAAGATTGTGAGGCAA+AGG | 0.552809 | 4.4:+39205573 | MS.gene28337:CDS |
| AGCATAATGTGGGTCTCTCA+AGG | 0.559262 | 4.4:+39206477 | MS.gene28337:CDS |
| GGCTCTTGTTTGCAACAAAG+AGG | 0.560233 | 4.4:+39205529 | MS.gene28337:CDS |
| TGGTAGTGTGGGAACTGCAG+CGG | 0.563388 | 4.4:-39205354 | None:intergenic |
| TCGAACTCCTGACCCACATA+GGG | 0.565037 | 4.4:-39205395 | None:intergenic |
| CTCGAACTCCTGACCCACAT+AGG | 0.567393 | 4.4:-39205396 | None:intergenic |
| AGTAGACAGTGTGAAGGAGA+TGG | 0.569154 | 4.4:+39206514 | MS.gene28337:CDS |
| GAATCCTGGAAGTAGTAGAA+AGG | 0.569556 | 4.4:+39205697 | MS.gene28337:CDS |
| GATGGTGCCATGGTTGTAGC+TGG | 0.569629 | 4.4:+39205224 | None:intergenic |
| CCGCGAACTATCTCAGCAGT+TGG | 0.570583 | 4.4:+39206388 | MS.gene28337:CDS |
| GCTCTTGTTTGCAACAAAGA+GGG | 0.580043 | 4.4:+39205530 | MS.gene28337:CDS |
| TGAGGCAAAGGGCAGAAACA+AGG | 0.583136 | 4.4:+39205585 | MS.gene28337:CDS |
| GCAGAAGCGTCTGGTAGTGT+GGG | 0.584434 | 4.4:-39205365 | None:intergenic |
| AGACGGAACTGCTATTGGAC+GGG | 0.589838 | 4.4:+39205508 | MS.gene28337:CDS |
| CTCTCACGATCAAGGAAAGA+CGG | 0.590017 | 4.4:+39205491 | MS.gene28337:CDS |
| TCTGCTGAGGAGCCCTATGT+GGG | 0.595284 | 4.4:+39205383 | MS.gene28337:CDS |
| AAGACGGAACTGCTATTGGA+CGG | 0.612304 | 4.4:+39205507 | MS.gene28337:CDS |
| AGTGATATTTGATTATATCG+AGG | 0.622955 | 4.4:+39206454 | MS.gene28337:CDS |
| CAAAGGGCAGAAACAAGGGT+TGG | 0.628129 | 4.4:+39205590 | MS.gene28337:CDS |
| TTACAATGCATACGCAGCCG+AGG | 0.629238 | 4.4:+39205442 | MS.gene28337:CDS |
| TATGCTACCAGCTACAACCA+TGG | 0.631572 | 4.4:-39205231 | None:intergenic |
| GCGTATAGTAGACAGTGTGA+AGG | 0.633138 | 4.4:+39206508 | MS.gene28337:CDS |
| TTATATCGAGGAGCATAATG+TGG | 0.635828 | 4.4:+39206466 | MS.gene28337:CDS |
| TATATCGAGGAGCATAATGT+GGG | 0.635920 | 4.4:+39206467 | MS.gene28337:CDS |
| ACTACCAGACGCTTCTGCTG+AGG | 0.646967 | 4.4:+39205370 | MS.gene28337:CDS |
| GAGGCAAAGGGCAGAAACAA+GGG | 0.664007 | 4.4:+39205586 | MS.gene28337:CDS |
| GCAGGGCAATGATTATGATG+AGG | 0.664420 | 4.4:+39205615 | MS.gene28337:CDS |
| ACAAGCGCGAAAAGATTGTG+AGG | 0.665448 | 4.4:+39205567 | MS.gene28337:CDS |
| GTGACTCAAGATTCTTCTGG+AGG | 0.668755 | 4.4:+39205317 | MS.gene28337:CDS |
| TGTGGGTCAGGAGTTCGAGT+CGG | 0.681569 | 4.4:+39205400 | MS.gene28337:CDS |
| TGTAGCTGGTAGCATACCTG+AGG | 0.687245 | 4.4:+39205238 | MS.gene28337:CDS |
| GCGTATGATGAATCCAACCT+CGG | 0.694329 | 4.4:-39205459 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATTTATACAATTCTT+CGG | - | chr4.4:39205767-39205786 | None:intergenic | 10.0% |
| !! | AAACGAAAATTAAAAATGAA+TGG | - | chr4.4:39206010-39206029 | None:intergenic | 15.0% |
| !! | GAAAATTAATTCTGGTAAAT+GGG | + | chr4.4:39205637-39205656 | MS.gene28337:CDS | 20.0% |
| !!! | AATGGATGAAGTATTATATA+AGG | - | chr4.4:39205992-39206011 | None:intergenic | 20.0% |
| !!! | ATTTCAGAAATGAAGTTTTT+AGG | + | chr4.4:39205905-39205924 | MS.gene28337:intron | 20.0% |
| !!! | CAACTTAGAAATTACTTTTA+CGG | + | chr4.4:39206238-39206257 | MS.gene28337:intron | 20.0% |
| !!! | TAAAAACTTCATTTCTGAAA+TGG | - | chr4.4:39205906-39205925 | None:intergenic | 20.0% |
| !!! | TAAGTAGTTAAAGGTATTAT+AGG | + | chr4.4:39206152-39206171 | MS.gene28337:intron | 20.0% |
| !!! | TGAAGTTTTTAGGATAATAT+TGG | + | chr4.4:39205915-39205934 | MS.gene28337:intron | 20.0% |
| !!! | TTCTTGTTATGTAGTTATAT+TGG | + | chr4.4:39206186-39206205 | MS.gene28337:intron | 20.0% |
| ! | AAAGTAACAATGACAATCAA+CGG | - | chr4.4:39205828-39205847 | None:intergenic | 25.0% |
| ! | AGTGATATTTGATTATATCG+AGG | + | chr4.4:39206454-39206473 | MS.gene28337:CDS | 25.0% |
| ! | ATGAGATGATAAGTAGTTAA+AGG | + | chr4.4:39206143-39206162 | MS.gene28337:intron | 25.0% |
| ! | ATGATGAGGAAAATTAATTC+TGG | + | chr4.4:39205629-39205648 | MS.gene28337:CDS | 25.0% |
| ! | GATTCTCGTATATATTGTAA+TGG | + | chr4.4:39205796-39205815 | MS.gene28337:intron | 25.0% |
| ! | GGAAAATTAATTCTGGTAAA+TGG | + | chr4.4:39205636-39205655 | MS.gene28337:CDS | 25.0% |
| ! | TTATGTTCTTCTTCTTCTTT+AGG | - | chr4.4:39206542-39206561 | None:intergenic | 25.0% |
| !! | GAATGAATGGTATTAGTTTA+AGG | + | chr4.4:39205864-39205883 | MS.gene28337:intron | 25.0% |
| !! | GGATATGTTTGAAATTTATC+CGG | + | chr4.4:39205718-39205737 | MS.gene28337:CDS | 25.0% |
| AGTTAATTCTGCATTGAACT+TGG | - | chr4.4:39206067-39206086 | None:intergenic | 30.0% | |
| CTTGATAGATTGAGAATGAA+TGG | + | chr4.4:39205851-39205870 | MS.gene28337:intron | 30.0% | |
| GGTTATTACGAAGTTTGTAA+AGG | + | chr4.4:39205658-39205677 | MS.gene28337:CDS | 30.0% | |
| AGAAACAAACGAGGTAAGTA+GGG | - | chr4.4:39206338-39206357 | None:intergenic | 35.0% | |
| ATATCCTTTCTACTACTTCC+AGG | - | chr4.4:39205704-39205723 | None:intergenic | 35.0% | |
| TAGAAACAAACGAGGTAAGT+AGG | - | chr4.4:39206339-39206358 | None:intergenic | 35.0% | |
| TCTTCTTCTATGTATTCCTC+AGG | - | chr4.4:39205257-39205276 | None:intergenic | 35.0% | |
| TTTATCGCAGAGAGAGAAAT+AGG | + | chr4.4:39206116-39206135 | MS.gene28337:intron | 35.0% | |
| ! | TATATCGAGGAGCATAATGT+GGG | + | chr4.4:39206467-39206486 | MS.gene28337:CDS | 35.0% |
| ! | TTATATCGAGGAGCATAATG+TGG | + | chr4.4:39206466-39206485 | MS.gene28337:CDS | 35.0% |
| !! | TCTTGGTCTTGTTTGTAAGA+TGG | - | chr4.4:39205290-39205309 | None:intergenic | 35.0% |
| AAACAAACGAGGTAAGTAGG+GGG | - | chr4.4:39206336-39206355 | None:intergenic | 40.0% | |
| AACGTGACTCAAGATTCTTC+TGG | + | chr4.4:39205314-39205333 | MS.gene28337:CDS | 40.0% | |
| CGAAAAGATTGTGAGGCAAA+GGG | + | chr4.4:39205574-39205593 | MS.gene28337:CDS | 40.0% | |
| CTAAGTTGCAATTTCTCTCG+TGG | - | chr4.4:39206226-39206245 | None:intergenic | 40.0% | |
| CTACTACTTCCAGGATTCAA+GGG | - | chr4.4:39205695-39205714 | None:intergenic | 40.0% | |
| CTTGAGTCACGTTATCATCT+TGG | - | chr4.4:39205307-39205326 | None:intergenic | 40.0% | |
| GAAACAAACGAGGTAAGTAG+GGG | - | chr4.4:39206337-39206356 | None:intergenic | 40.0% | |
| GAATCCTGGAAGTAGTAGAA+AGG | + | chr4.4:39205697-39205716 | MS.gene28337:CDS | 40.0% | |
| GACTGACATAGAAACAAACG+AGG | - | chr4.4:39206347-39206366 | None:intergenic | 40.0% | |
| TCTACTACTTCCAGGATTCA+AGG | - | chr4.4:39205696-39205715 | None:intergenic | 40.0% | |
| TTGCAATTTCTCTCGTGGAA+AGG | - | chr4.4:39206221-39206240 | None:intergenic | 40.0% | |
| TTTCTCTCGTGGAAAGGATA+AGG | - | chr4.4:39206215-39206234 | None:intergenic | 40.0% | |
| ! | CTTCGGTAGTGAAAAAGCAT+AGG | - | chr4.4:39205750-39205769 | None:intergenic | 40.0% |
| ! | GAAAAAGCATAGGAACTGAC+CGG | - | chr4.4:39205740-39205759 | None:intergenic | 40.0% |
| ! | GCTCTTGTTTGCAACAAAGA+GGG | + | chr4.4:39205530-39205549 | MS.gene28337:CDS | 40.0% |
| AAGACGGAACTGCTATTGGA+CGG | + | chr4.4:39205507-39205526 | MS.gene28337:CDS | 45.0% | |
| ACAAGCGCGAAAAGATTGTG+AGG | + | chr4.4:39205567-39205586 | MS.gene28337:CDS | 45.0% | |
| AGCATAATGTGGGTCTCTCA+AGG | + | chr4.4:39206477-39206496 | MS.gene28337:CDS | 45.0% | |
| AGGAAAGACGGAACTGCTAT+TGG | + | chr4.4:39205503-39205522 | MS.gene28337:CDS | 45.0% | |
| AGTAGACAGTGTGAAGGAGA+TGG | + | chr4.4:39206514-39206533 | MS.gene28337:CDS | 45.0% | |
| CTCTCACGATCAAGGAAAGA+CGG | + | chr4.4:39205491-39205510 | MS.gene28337:CDS | 45.0% | |
| GCAGGGCAATGATTATGATG+AGG | + | chr4.4:39205615-39205634 | MS.gene28337:CDS | 45.0% | |
| GCGAAAAGATTGTGAGGCAA+AGG | + | chr4.4:39205573-39205592 | MS.gene28337:CDS | 45.0% | |
| GCGTATAGTAGACAGTGTGA+AGG | + | chr4.4:39206508-39206527 | MS.gene28337:CDS | 45.0% | |
| GCGTATGATGAATCCAACCT+CGG | - | chr4.4:39205462-39205481 | None:intergenic | 45.0% | |
| GTGACTCAAGATTCTTCTGG+AGG | + | chr4.4:39205317-39205336 | MS.gene28337:CDS | 45.0% | |
| TAAGCAAGCTCTCACGATCA+AGG | + | chr4.4:39205483-39205502 | MS.gene28337:CDS | 45.0% | |
| ! | ACAATCTTTTCGCGCTTGTC+AGG | - | chr4.4:39205566-39205585 | None:intergenic | 45.0% |
| ! | GGCTCTTGTTTGCAACAAAG+AGG | + | chr4.4:39205529-39205548 | MS.gene28337:CDS | 45.0% |
| !! | AGAAACAAGGGTTGGTTGCA+GGG | + | chr4.4:39205598-39205617 | MS.gene28337:CDS | 45.0% |
| AGACGGAACTGCTATTGGAC+GGG | + | chr4.4:39205508-39205527 | MS.gene28337:CDS | 50.0% | |
| CAAAGGGCAGAAACAAGGGT+TGG | + | chr4.4:39205590-39205609 | MS.gene28337:CDS | 50.0% | |
| CACACACATCCCTTGAATCC+TGG | + | chr4.4:39205683-39205702 | MS.gene28337:CDS | 50.0% | |
| CCAACTGCTGAGATAGTTCG+CGG | - | chr4.4:39206391-39206410 | None:intergenic | 50.0% | |
| CTCTCGTGGAAAGGATAAGG+TGG | - | chr4.4:39206212-39206231 | None:intergenic | 50.0% | |
| GAGGCAAAGGGCAGAAACAA+GGG | + | chr4.4:39205586-39205605 | MS.gene28337:CDS | 50.0% | |
| TCGAACTCCTGACCCACATA+GGG | - | chr4.4:39205398-39205417 | None:intergenic | 50.0% | |
| TGAGGCAAAGGGCAGAAACA+AGG | + | chr4.4:39205585-39205604 | MS.gene28337:CDS | 50.0% | |
| TGTAGCTGGTAGCATACCTG+AGG | + | chr4.4:39205238-39205257 | MS.gene28337:CDS | 50.0% | |
| TTACAATGCATACGCAGCCG+AGG | + | chr4.4:39205442-39205461 | MS.gene28337:CDS | 50.0% | |
| !! | CAGAAACAAGGGTTGGTTGC+AGG | + | chr4.4:39205597-39205616 | MS.gene28337:CDS | 50.0% |
| AATGCATACGCAGCCGAGGT+TGG | + | chr4.4:39205446-39205465 | MS.gene28337:CDS | 55.0% | |
| ACTACCAGACGCTTCTGCTG+AGG | + | chr4.4:39205370-39205389 | MS.gene28337:CDS | 55.0% | |
| CCGCGAACTATCTCAGCAGT+TGG | + | chr4.4:39206388-39206407 | MS.gene28337:CDS | 55.0% | |
| CTCGAACTCCTGACCCACAT+AGG | - | chr4.4:39205399-39205418 | None:intergenic | 55.0% | |
| TCTGCTGAGGAGCCCTATGT+GGG | + | chr4.4:39205383-39205402 | MS.gene28337:CDS | 55.0% | |
| TGTGGGTCAGGAGTTCGAGT+CGG | + | chr4.4:39205400-39205419 | MS.gene28337:CDS | 55.0% | |
| TTCTGCTGAGGAGCCCTATG+TGG | + | chr4.4:39205382-39205401 | MS.gene28337:CDS | 55.0% | |
| ! | TGGTAGTGTGGGAACTGCAG+CGG | - | chr4.4:39205357-39205376 | None:intergenic | 55.0% |
| !! | AGCAGAAGCGTCTGGTAGTG+TGG | - | chr4.4:39205369-39205388 | None:intergenic | 55.0% |
| !! | GCAGAAGCGTCTGGTAGTGT+GGG | - | chr4.4:39205368-39205387 | None:intergenic | 55.0% |
| GGTAGTGTGGGAACTGCAGC+GGG | - | chr4.4:39205356-39205375 | None:intergenic | 60.0% | |
| TGAGGAGCCCTATGTGGGTC+AGG | + | chr4.4:39205388-39205407 | MS.gene28337:CDS | 60.0% | |
| !! | GGCTCCTCAGCAGAAGCGTC+TGG | - | chr4.4:39205377-39205396 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39205233 | 39206568 | 39205233 | ID=MS.gene28337 |
| chr4.4 | mRNA | 39205233 | 39206568 | 39205233 | ID=MS.gene28337.t1;Parent=MS.gene28337 |
| chr4.4 | exon | 39205233 | 39205739 | 39205233 | ID=MS.gene28337.t1.exon1;Parent=MS.gene28337.t1 |
| chr4.4 | CDS | 39205233 | 39205739 | 39205233 | ID=cds.MS.gene28337.t1;Parent=MS.gene28337.t1 |
| chr4.4 | exon | 39206365 | 39206568 | 39206365 | ID=MS.gene28337.t1.exon2;Parent=MS.gene28337.t1 |
| chr4.4 | CDS | 39206365 | 39206568 | 39206365 | ID=cds.MS.gene28337.t1;Parent=MS.gene28337.t1 |
| Gene Sequence |
| Protein sequence |
