Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28340.t1 | KEH30327.1 | 83.8 | 506 | 80 | 2 | 1 | 505 | 76 | 580 | 1.00E-158 | 570.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28340.t1 | O94481 | 33.8 | 130 | 78 | 4 | 364 | 490 | 380 | 504 | 2.7e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28340.t1 | A0A072UKV6 | 83.8 | 506 | 80 | 2 | 1 | 505 | 76 | 580 | 7.5e-159 | 570.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28340.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28340.t1 | MTR_4g067250 | 91.107 | 506 | 43 | 2 | 1 | 505 | 76 | 580 | 0.0 | 876 |
| MS.gene28340.t1 | MTR_8g091830 | 55.000 | 400 | 148 | 10 | 134 | 505 | 363 | 758 | 4.40e-92 | 296 |
| MS.gene28340.t1 | MTR_8g091830 | 54.798 | 396 | 151 | 9 | 134 | 505 | 365 | 756 | 6.45e-89 | 290 |
| MS.gene28340.t1 | MTR_8g091850 | 41.254 | 303 | 121 | 8 | 124 | 423 | 46 | 294 | 1.79e-53 | 182 |
| MS.gene28340.t1 | MTR_8g091840 | 57.895 | 57 | 23 | 1 | 450 | 505 | 9 | 65 | 1.06e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28340.t1 | AT4G39160 | 39.147 | 258 | 133 | 8 | 191 | 437 | 277 | 521 | 4.17e-37 | 144 |
| MS.gene28340.t1 | AT4G39160 | 39.147 | 258 | 133 | 8 | 191 | 437 | 277 | 521 | 4.17e-37 | 144 |
| MS.gene28340.t1 | AT4G39160 | 39.147 | 258 | 133 | 8 | 191 | 437 | 277 | 521 | 4.45e-37 | 145 |
Find 83 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCAATCAATTTCTCTT+AGG | 0.163126 | 4.4:-39222897 | MS.gene28340:CDS |
| TCTTGCAATTGCAGAAAATA+AGG | 0.274714 | 4.4:-39222869 | MS.gene28340:CDS |
| TCTATATTGTTACAAATATA+AGG | 0.289417 | 4.4:+39223238 | None:intergenic |
| CACAGTGGACCAGGCTCTGC+TGG | 0.334784 | 4.4:-39222935 | MS.gene28340:intron |
| GTTGAATCATTGTAAAATCT+AGG | 0.346657 | 4.4:+39221980 | None:intergenic |
| ACAAGTCACCTAGGGTAAAA+TGG | 0.357410 | 4.4:-39222193 | MS.gene28340:CDS |
| CATGCTACCTCGTCTGTAGA+TGG | 0.366233 | 4.4:-39224041 | MS.gene28340:CDS |
| CTGCTGGATGATTATGAACT+TGG | 0.367304 | 4.4:-39222919 | MS.gene28340:CDS |
| GGCTTCCTGATTTGCATTAG+TGG | 0.370648 | 4.4:+39221669 | None:intergenic |
| CCCGAGACCAACCTCAATAA+TGG | 0.372518 | 4.4:-39223972 | MS.gene28340:intron |
| ACCATTATTGAGGTTGGTCT+CGG | 0.372588 | 4.4:+39223971 | None:intergenic |
| CACTTCTGAAGCCAACATTT+AGG | 0.375419 | 4.4:+39223714 | None:intergenic |
| TTCTACCACTAATGCAAATC+AGG | 0.389275 | 4.4:-39221674 | MS.gene28340:CDS |
| TTCTCAATCAATTTCTCTTA+GGG | 0.392485 | 4.4:-39222896 | MS.gene28340:CDS |
| TACTAGCTTGATCATACTCT+TGG | 0.398834 | 4.4:+39222267 | None:intergenic |
| GTTGGCTTCAGAAGTGCTTC+AGG | 0.403637 | 4.4:-39223707 | MS.gene28340:CDS |
| GGGGATTTCTTTCATGATGC+TGG | 0.405910 | 4.4:-39222341 | MS.gene28340:CDS |
| AAAAGTTCTCTCATTCTTCT+CGG | 0.409991 | 4.4:-39223054 | MS.gene28340:CDS |
| ACATAGGCTCTGAAGGAGTT+TGG | 0.412678 | 4.4:-39222003 | MS.gene28340:intron |
| GCTATTAATAGTCGTTCATC+AGG | 0.426472 | 4.4:-39221874 | MS.gene28340:intron |
| CGTAAAAGATCATCTGTTGC+TGG | 0.432583 | 4.4:-39223370 | MS.gene28340:CDS |
| TTTGACCTTCGGCGCAAACT+TGG | 0.442856 | 4.4:+39224103 | None:intergenic |
| GTGACTTGTCCCTAAAAGAA+TGG | 0.456507 | 4.4:+39222207 | None:intergenic |
| AACATAACTTACCATTATTG+AGG | 0.456653 | 4.4:+39223961 | None:intergenic |
| AAACTCAAACTCATTAATTG+AGG | 0.471340 | 4.4:-39223281 | MS.gene28340:CDS |
| ATTGAGGTTGGTCTCGGGAA+TGG | 0.473304 | 4.4:+39223977 | None:intergenic |
| AGAGTGCATACATTAATTCC+AGG | 0.475172 | 4.4:+39221619 | None:intergenic |
| TTTCATTCCCACAGTGGACC+AGG | 0.476047 | 4.4:-39222944 | MS.gene28340:intron |
| CTGTGTTGCTTACCTTCGAT+TGG | 0.477352 | 4.4:+39222708 | None:intergenic |
| CAGTGCTGATGTTAAAGATC+AGG | 0.478050 | 4.4:-39221076 | MS.gene28340:CDS |
| TGCAGATATTTCCTTTCGTA+AGG | 0.479200 | 4.4:+39224070 | None:intergenic |
| AATGGAATGAATGTTGTTCT+CGG | 0.482678 | 4.4:+39223664 | None:intergenic |
| TGACTTGTCCCTAAAAGAAT+GGG | 0.487889 | 4.4:+39222208 | None:intergenic |
| TAACTTACCATTATTGAGGT+TGG | 0.489810 | 4.4:+39223965 | None:intergenic |
| CCATTATTGAGGTTGGTCTC+GGG | 0.494784 | 4.4:+39223972 | None:intergenic |
| CATTACTAACCACGTGCAGC+AGG | 0.498380 | 4.4:+39224384 | None:intergenic |
| TGTTGCTTACCTTCGATTGG+TGG | 0.499150 | 4.4:+39222711 | None:intergenic |
| TCACTATCATCAGATTGCTC+TGG | 0.502518 | 4.4:+39221030 | None:intergenic |
| TGCAGAAAATAAGGAGCGAC+CGG | 0.506681 | 4.4:-39222860 | MS.gene28340:CDS |
| TAGTGCCAAGTTTGCGCCGA+AGG | 0.506770 | 4.4:-39224108 | MS.gene28340:CDS |
| TCATTAATTGAGGATGATGA+TGG | 0.509072 | 4.4:-39223271 | MS.gene28340:CDS |
| GTGATGATGACTTACAGAAA+TGG | 0.510346 | 4.4:-39221011 | MS.gene28340:CDS |
| ATAGCATCAGTTATTCGTAA+AGG | 0.518506 | 4.4:+39221892 | None:intergenic |
| GCATTAGTGGTAGAAATTTG+AGG | 0.522078 | 4.4:+39221682 | None:intergenic |
| CATAATCATCCAGCAGAGCC+TGG | 0.529086 | 4.4:+39222926 | None:intergenic |
| GGAATGGATTTAGTGACGGT+GGG | 0.535901 | 4.4:+39223993 | None:intergenic |
| AATGGATTTAGTGACGGTGG+GGG | 0.543456 | 4.4:+39223995 | None:intergenic |
| CTGTCAAGGAATGCAGTGGA+TGG | 0.545069 | 4.4:+39223776 | None:intergenic |
| CTCTGGACTATGATACGCCA+TGG | 0.555687 | 4.4:+39221047 | None:intergenic |
| AAGATCATCTGTTGCTGGTG+TGG | 0.557955 | 4.4:-39223365 | MS.gene28340:CDS |
| ATGCTACCTCGTCTGTAGAT+GGG | 0.560684 | 4.4:-39224040 | MS.gene28340:CDS |
| ACTTGAAGAAAATGATGAAG+AGG | 0.565812 | 4.4:-39223212 | MS.gene28340:CDS |
| AATATTTAGCTGCAGTGGTG+GGG | 0.567750 | 4.4:-39222360 | MS.gene28340:intron |
| AAATGATGAAGAGGACGAAG+TGG | 0.576336 | 4.4:-39223203 | MS.gene28340:CDS |
| GTCAAGGAATGCAGTGGATG+GGG | 0.578734 | 4.4:+39223778 | None:intergenic |
| TTGCAAGACAGCCTAAATGT+TGG | 0.580193 | 4.4:-39223725 | MS.gene28340:CDS |
| TTTATTAGGATGCTAATGAG+AGG | 0.585716 | 4.4:-39223411 | MS.gene28340:intron |
| ATCAAAACAGTCCTTACGAA+AGG | 0.590154 | 4.4:-39224081 | MS.gene28340:CDS |
| GAATGGATTTAGTGACGGTG+GGG | 0.591826 | 4.4:+39223994 | None:intergenic |
| ACTACTGAAGACATGTCACC+TGG | 0.592887 | 4.4:-39221637 | MS.gene28340:CDS |
| CTCGGGAATGGATTTAGTGA+CGG | 0.594357 | 4.4:+39223989 | None:intergenic |
| GTCTTCAGTAGTGTCTTCAG+TGG | 0.600402 | 4.4:+39221648 | None:intergenic |
| TGCTGATGTTAAAGATCAGG+AGG | 0.606209 | 4.4:-39221073 | MS.gene28340:CDS |
| CAAAATCTTCCACCAATCGA+AGG | 0.613148 | 4.4:-39222720 | MS.gene28340:intron |
| GGGAATGGATTTAGTGACGG+TGG | 0.613872 | 4.4:+39223992 | None:intergenic |
| CTTGAAGCTCCTGCTGCACG+TGG | 0.616756 | 4.4:-39224393 | MS.gene28340:intron |
| TGTCAAGGAATGCAGTGGAT+GGG | 0.621373 | 4.4:+39223777 | None:intergenic |
| TTCGGCGCAAACTTGGCACT+AGG | 0.622860 | 4.4:+39224110 | None:intergenic |
| ATCATCTGTTGCTGGTGTGG+AGG | 0.632127 | 4.4:-39223362 | MS.gene28340:CDS |
| ATATTGTTACAAATATAAGG+AGG | 0.636102 | 4.4:+39223241 | None:intergenic |
| TAAAGATCAGGAGGATCCCA+TGG | 0.641855 | 4.4:-39221064 | MS.gene28340:CDS |
| AGAAAATAAGGAGCGACCGG+AGG | 0.647366 | 4.4:-39222857 | MS.gene28340:intron |
| AGAATGGGAATTGTATAAAG+CGG | 0.648772 | 4.4:+39222223 | None:intergenic |
| GTTGCTGTCAAGGAATGCAG+TGG | 0.651362 | 4.4:+39223772 | None:intergenic |
| TATTGTTACAAATATAAGGA+GGG | 0.653546 | 4.4:+39223242 | None:intergenic |
| TACTTCCGGAAAAGTACAAG+AGG | 0.653833 | 4.4:-39223639 | MS.gene28340:intron |
| TCTGGACTATGATACGCCAT+GGG | 0.656583 | 4.4:+39221048 | None:intergenic |
| AGAGGTTGCAACAACTGAGG+AGG | 0.662600 | 4.4:-39221100 | MS.gene28340:CDS |
| ATGACCGTGATAAAAGCTCA+AGG | 0.662857 | 4.4:-39223339 | MS.gene28340:CDS |
| TTATTCGTAAAGGATGATGT+CGG | 0.671321 | 4.4:+39221902 | None:intergenic |
| GGAAGAGGTTGCAACAACTG+AGG | 0.674245 | 4.4:-39221103 | MS.gene28340:CDS |
| TGCTGGTGCTAATAGTGAAG+AGG | 0.679934 | 4.4:-39222324 | MS.gene28340:CDS |
| GTTCTTCCCATCTACAGACG+AGG | 0.708904 | 4.4:+39224034 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAATATAATTGACA+AGG | + | chr4.4:39222872-39222891 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATTTATACGTA+CGG | - | chr4.4:39221059-39221078 | MS.gene28340:CDS | 10.0% |
| !!! | TTTCATTTGTAATTTTTATT+AGG | - | chr4.4:39221979-39221998 | MS.gene28340:CDS | 10.0% |
| !! | AATATAAATCTATTTACTAC+TGG | + | chr4.4:39223014-39223033 | None:intergenic | 15.0% |
| !! | ATATTAAGGTTTAAATTACA+TGG | + | chr4.4:39224012-39224031 | None:intergenic | 15.0% |
| !! | TAAGAAATATTACAATTATG+TGG | + | chr4.4:39224230-39224249 | None:intergenic | 15.0% |
| !! | TCTATATTGTTACAAATATA+AGG | + | chr4.4:39222169-39222188 | None:intergenic | 15.0% |
| !!! | AGTTAAATTTGCTTATATTT+AGG | + | chr4.4:39221126-39221145 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTAACTTTTT+AGG | - | chr4.4:39221130-39221149 | MS.gene28340:intron | 15.0% |
| !!! | CATTCATTTTTTTAAAACAT+AGG | - | chr4.4:39223385-39223404 | MS.gene28340:CDS | 15.0% |
| !!! | CTATGTTTTAAAAAAATGAA+TGG | + | chr4.4:39223387-39223406 | None:intergenic | 15.0% |
| !!! | TTGTTTTGTTTTATATTTTG+AGG | - | chr4.4:39223812-39223831 | MS.gene28340:CDS | 15.0% |
| !! | AAGTTCAAAAAAGAAATATG+TGG | - | chr4.4:39222255-39222274 | MS.gene28340:CDS | 20.0% |
| !! | ATATTGTTACAAATATAAGG+AGG | + | chr4.4:39222166-39222185 | None:intergenic | 20.0% |
| !! | TATTGTTACAAATATAAGGA+GGG | + | chr4.4:39222165-39222184 | None:intergenic | 20.0% |
| !!! | AGATCATCATATTTTTAAGT+CGG | - | chr4.4:39223685-39223704 | MS.gene28340:CDS | 20.0% |
| !!! | AGTCAAATTTGCTTATATTT+AGG | - | chr4.4:39221223-39221242 | MS.gene28340:intron | 20.0% |
| !!! | ATGATTCAACAAAATTTTTC+TGG | - | chr4.4:39223437-39223456 | MS.gene28340:intron | 20.0% |
| !!! | ATTACTAATTTTGTCTTTTC+TGG | - | chr4.4:39223320-39223339 | MS.gene28340:CDS | 20.0% |
| !!! | ATTATATTCTTTTTGTAGCT+CGG | - | chr4.4:39221271-39221290 | MS.gene28340:intron | 20.0% |
| ! | AAAAAAAGCAAGAAGGAAAA+TGG | - | chr4.4:39222298-39222317 | MS.gene28340:CDS | 25.0% |
| ! | AAACTCAAACTCATTAATTG+AGG | - | chr4.4:39222123-39222142 | MS.gene28340:intron | 25.0% |
| ! | AACATAACTTACCATTATTG+AGG | + | chr4.4:39221446-39221465 | None:intergenic | 25.0% |
| ! | AAGAAATATGTGGCTAAAAA+TGG | - | chr4.4:39222265-39222284 | MS.gene28340:CDS | 25.0% |
| ! | ATATGACGTAAAAACTTTCA+AGG | - | chr4.4:39224133-39224152 | MS.gene28340:intron | 25.0% |
| ! | ATGATGGTAAATAAGATGTT+TGG | + | chr4.4:39222991-39223010 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | - | chr4.4:39221155-39221174 | MS.gene28340:intron | 25.0% |
| ! | CTAGATATGAAATGATTCAA+TGG | + | chr4.4:39221540-39221559 | None:intergenic | 25.0% |
| ! | GAAGTAAATTTGAGTAACAA+AGG | + | chr4.4:39223990-39224009 | None:intergenic | 25.0% |
| ! | GATGTTTGTGAGTTAAAATT+TGG | - | chr4.4:39223917-39223936 | MS.gene28340:intron | 25.0% |
| ! | GTTGAATCATTGTAAAATCT+AGG | + | chr4.4:39223427-39223446 | None:intergenic | 25.0% |
| ! | TAAAATGTTATTCCACATCA+AGG | + | chr4.4:39223636-39223655 | None:intergenic | 25.0% |
| ! | TATAATTATAATACTCCCTC+CGG | - | chr4.4:39221099-39221118 | MS.gene28340:CDS | 25.0% |
| ! | TATACGTTGCTTCTATATTA+AGG | + | chr4.4:39224026-39224045 | None:intergenic | 25.0% |
| ! | TGTAAAAAATCAGCTAATGT+AGG | + | chr4.4:39221858-39221877 | None:intergenic | 25.0% |
| ! | TTCTCAATCAATTTCTCTTA+GGG | - | chr4.4:39222508-39222527 | MS.gene28340:intron | 25.0% |
| ! | TTCTGAATCTATAATTGAAG+TGG | + | chr4.4:39224192-39224211 | None:intergenic | 25.0% |
| !! | AATTGTTATTAGTAGGCTTA+TGG | - | chr4.4:39222611-39222630 | MS.gene28340:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr4.4:39221228-39221247 | MS.gene28340:intron | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | + | chr4.4:39221247-39221228 | None:intergenic | 25.0% |
| !! | ATACAATTCCCATTCTTTTA+GGG | - | chr4.4:39223188-39223207 | MS.gene28340:CDS | 25.0% |
| !! | ATTTTGTCTTTTCTGGATTT+AGG | - | chr4.4:39223327-39223346 | MS.gene28340:CDS | 25.0% |
| !! | GAATACCTCATAAAACTTTT+CGG | + | chr4.4:39223250-39223269 | None:intergenic | 25.0% |
| !! | TATACAATTCCCATTCTTTT+AGG | - | chr4.4:39223187-39223206 | MS.gene28340:CDS | 25.0% |
| !! | TCTTAGCAATTGTTATTAGT+AGG | - | chr4.4:39222604-39222623 | MS.gene28340:intron | 25.0% |
| !! | TGAGAATCCATTTTATACAA+GGG | - | chr4.4:39224082-39224101 | MS.gene28340:CDS | 25.0% |
| !! | TGTATAAAATGGATTCTCAA+GGG | + | chr4.4:39224081-39224100 | None:intergenic | 25.0% |
| !! | TTGAGAATCCATTTTATACA+AGG | - | chr4.4:39224081-39224100 | MS.gene28340:CDS | 25.0% |
| !! | TTGTATAAAATGGATTCTCA+AGG | + | chr4.4:39224082-39224101 | None:intergenic | 25.0% |
| !! | TTTAAAATATTTAGCTGCAG+TGG | - | chr4.4:39223039-39223058 | MS.gene28340:CDS | 25.0% |
| !!! | ATTCATTCCATTTTTACTTC+CGG | - | chr4.4:39221751-39221770 | MS.gene28340:intron | 25.0% |
| !!! | TTTTGAGGTCTATATTCATT+TGG | - | chr4.4:39223827-39223846 | MS.gene28340:intron | 25.0% |
| AAAAGTTCTCTCATTCTTCT+CGG | - | chr4.4:39222350-39222369 | MS.gene28340:intron | 30.0% | |
| AAATCGTGAAAGCTAACAAA+GGG | + | chr4.4:39222845-39222864 | None:intergenic | 30.0% | |
| AAGAGTCTTGAATATTTGCA+AGG | + | chr4.4:39224265-39224284 | None:intergenic | 30.0% | |
| AATGGAATGAATGTTGTTCT+CGG | + | chr4.4:39221743-39221762 | None:intergenic | 30.0% | |
| ACTTGAAGAAAATGATGAAG+AGG | - | chr4.4:39222192-39222211 | MS.gene28340:CDS | 30.0% | |
| AGAATGGGAATTGTATAAAG+CGG | + | chr4.4:39223184-39223203 | None:intergenic | 30.0% | |
| AGCATACAAAAAAAGCAAGA+AGG | - | chr4.4:39222291-39222310 | MS.gene28340:CDS | 30.0% | |
| ATAGCATCAGTTATTCGTAA+AGG | + | chr4.4:39223515-39223534 | None:intergenic | 30.0% | |
| ATATGTGTCTTTATTGTGCT+AGG | + | chr4.4:39224164-39224183 | None:intergenic | 30.0% | |
| ATATTACATTATACTCCCTC+CGG | + | chr4.4:39221250-39221269 | None:intergenic | 30.0% | |
| ATCTATTTACTACTGGATGA+TGG | + | chr4.4:39223007-39223026 | None:intergenic | 30.0% | |
| ATGAGAGGAAAAAATCTCTA+AGG | - | chr4.4:39222008-39222027 | MS.gene28340:intron | 30.0% | |
| CACACATATCTTAACTTCTT+AGG | + | chr4.4:39222782-39222801 | None:intergenic | 30.0% | |
| CATATAGTACATGATCAGTA+GGG | - | chr4.4:39223590-39223609 | MS.gene28340:intron | 30.0% | |
| GATGTATGTGGTTCATATTA+TGG | - | chr4.4:39221167-39221186 | MS.gene28340:intron | 30.0% | |
| GTCATATCACATATACATGA+TGG | + | chr4.4:39224120-39224139 | None:intergenic | 30.0% | |
| GTGTATTATCAAAGCAGTAT+TGG | - | chr4.4:39222726-39222745 | MS.gene28340:CDS | 30.0% | |
| GTTCTCAATCAATTTCTCTT+AGG | - | chr4.4:39222507-39222526 | MS.gene28340:intron | 30.0% | |
| TAAATCGTGAAAGCTAACAA+AGG | + | chr4.4:39222846-39222865 | None:intergenic | 30.0% | |
| TAACTTACCATTATTGAGGT+TGG | + | chr4.4:39221442-39221461 | None:intergenic | 30.0% | |
| TCATATAGTACATGATCAGT+AGG | - | chr4.4:39223589-39223608 | MS.gene28340:intron | 30.0% | |
| TCATTAATTGAGGATGATGA+TGG | - | chr4.4:39222133-39222152 | MS.gene28340:intron | 30.0% | |
| TCTTGCAATTGCAGAAAATA+AGG | - | chr4.4:39222535-39222554 | MS.gene28340:intron | 30.0% | |
| TGTTGTTCCCTTGTATAAAA+TGG | + | chr4.4:39224092-39224111 | None:intergenic | 30.0% | |
| TTATTCGTAAAGGATGATGT+CGG | + | chr4.4:39223505-39223524 | None:intergenic | 30.0% | |
| TTGCTAAGAATTGTAACACA+AGG | + | chr4.4:39222593-39222612 | None:intergenic | 30.0% | |
| TTTATTAGGATGCTAATGAG+AGG | - | chr4.4:39221993-39222012 | MS.gene28340:CDS | 30.0% | |
| ! | AATGTCTACTTCTTTTCCTA+TGG | + | chr4.4:39221892-39221911 | None:intergenic | 30.0% |
| ! | AGAAGAATGAGAGAACTTTT+TGG | + | chr4.4:39222350-39222369 | None:intergenic | 30.0% |
| ! | CCAAAATTAGCACTTTTACT+TGG | - | chr4.4:39223958-39223977 | MS.gene28340:intron | 30.0% |
| ! | GAAGAATGAGAGAACTTTTT+GGG | + | chr4.4:39222349-39222368 | None:intergenic | 30.0% |
| ! | GCATTGACAACTATTAAATG+TGG | - | chr4.4:39221559-39221578 | MS.gene28340:intron | 30.0% |
| ! | TACTTTTCCGGAAGTAAAAA+TGG | + | chr4.4:39221761-39221780 | None:intergenic | 30.0% |
| !! | AGATACCGAAAAGTTTTATG+AGG | - | chr4.4:39223242-39223261 | MS.gene28340:CDS | 30.0% |
| !!! | ACTTTTAGTTCAGATGATGA+TGG | - | chr4.4:39223105-39223124 | MS.gene28340:CDS | 30.0% |
| !!! | CCAAGTAAAAGTGCTAATTT+TGG | + | chr4.4:39223961-39223980 | None:intergenic | 30.0% |
| !!! | TTTTAAAACATAGGCTCTGA+AGG | - | chr4.4:39223394-39223413 | MS.gene28340:CDS | 30.0% |
| AAAATATTTAGCTGCAGTGG+TGG | - | chr4.4:39223042-39223061 | MS.gene28340:CDS | 35.0% | |
| AAATATTTAGCTGCAGTGGT+GGG | - | chr4.4:39223043-39223062 | MS.gene28340:CDS | 35.0% | |
| AATCAGCTAATGTAGGACTA+CGG | + | chr4.4:39221851-39221870 | None:intergenic | 35.0% | |
| AGAGTGCATACATTAATTCC+AGG | + | chr4.4:39223788-39223807 | None:intergenic | 35.0% | |
| ATCAAAACAGTCCTTACGAA+AGG | - | chr4.4:39221323-39221342 | MS.gene28340:intron | 35.0% | |
| GCATTAGTGGTAGAAATTTG+AGG | + | chr4.4:39223725-39223744 | None:intergenic | 35.0% | |
| GCTATTAATAGTCGTTCATC+AGG | - | chr4.4:39223530-39223549 | MS.gene28340:intron | 35.0% | |
| TCGTTGTATGTGATTGAGAT+AGG | - | chr4.4:39222807-39222826 | MS.gene28340:intron | 35.0% | |
| TCTTTATCTACTCCTTGATG+TGG | - | chr4.4:39223621-39223640 | MS.gene28340:intron | 35.0% | |
| TGCAGATATTTCCTTTCGTA+AGG | + | chr4.4:39221337-39221356 | None:intergenic | 35.0% | |
| TTCTACCACTAATGCAAATC+AGG | - | chr4.4:39223730-39223749 | MS.gene28340:CDS | 35.0% | |
| TTGTTTCCCTATGCAGAAAA+AGG | - | chr4.4:39222658-39222677 | MS.gene28340:intron | 35.0% | |
| TTTCTGCATAGGGAAACAAA+TGG | + | chr4.4:39222657-39222676 | None:intergenic | 35.0% | |
| ! | AAGTATTTTCATTCCCACAG+TGG | - | chr4.4:39222454-39222473 | MS.gene28340:intron | 35.0% |
| ! | GTCTTTTCTGGATTTAGGAA+TGG | - | chr4.4:39223332-39223351 | MS.gene28340:CDS | 35.0% |
| ! | GTGATGATGACTTACAGAAA+TGG | - | chr4.4:39224393-39224412 | MS.gene28340:intron | 35.0% |
| ! | TACTAGCTTGATCATACTCT+TGG | + | chr4.4:39223140-39223159 | None:intergenic | 35.0% |
| ! | TGACTTGTCCCTAAAAGAAT+GGG | + | chr4.4:39223199-39223218 | None:intergenic | 35.0% |
| ! | TTCTACCTCTTGTACTTTTC+CGG | + | chr4.4:39221773-39221792 | None:intergenic | 35.0% |
| !!! | GACTGTTTTGATTTGACCTT+CGG | + | chr4.4:39221315-39221334 | None:intergenic | 35.0% |
| AAATGATGAAGAGGACGAAG+TGG | - | chr4.4:39222201-39222220 | MS.gene28340:CDS | 40.0% | |
| AATATTTAGCTGCAGTGGTG+GGG | - | chr4.4:39223044-39223063 | MS.gene28340:CDS | 40.0% | |
| AATTCACTGCACATCTTACG+TGG | - | chr4.4:39222963-39222982 | MS.gene28340:intron | 40.0% | |
| ACAAGTCACCTAGGGTAAAA+TGG | - | chr4.4:39223211-39223230 | MS.gene28340:CDS | 40.0% | |
| ACGTACGGTTGTTATGTACT+TGG | - | chr4.4:39221074-39221093 | MS.gene28340:CDS | 40.0% | |
| ATGACCGTGATAAAAGCTCA+AGG | - | chr4.4:39222065-39222084 | MS.gene28340:intron | 40.0% | |
| CAAAATCTTCCACCAATCGA+AGG | - | chr4.4:39222684-39222703 | MS.gene28340:intron | 40.0% | |
| CGTAAAAGATCATCTGTTGC+TGG | - | chr4.4:39222034-39222053 | MS.gene28340:intron | 40.0% | |
| CTCTTGTAATCTGAATGTGC+AGG | - | chr4.4:39224280-39224299 | MS.gene28340:intron | 40.0% | |
| CTGCTGGATGATTATGAACT+TGG | - | chr4.4:39222485-39222504 | MS.gene28340:intron | 40.0% | |
| TAATCTGAATGTGCAGGAAG+AGG | - | chr4.4:39224286-39224305 | MS.gene28340:intron | 40.0% | |
| TAGTTGAGAATACCTACCTC+CGG | + | chr4.4:39222566-39222585 | None:intergenic | 40.0% | |
| TCACTATCATCAGATTGCTC+TGG | + | chr4.4:39224377-39224396 | None:intergenic | 40.0% | |
| TGCTGATGTTAAAGATCAGG+AGG | - | chr4.4:39224331-39224350 | MS.gene28340:intron | 40.0% | |
| TTACAGCAAGACGTTACCAT+AGG | - | chr4.4:39221873-39221892 | MS.gene28340:intron | 40.0% | |
| TTACTTGTCTGTGCTCTTCA+TGG | - | chr4.4:39223566-39223585 | MS.gene28340:intron | 40.0% | |
| TTGCAAGACAGCCTAAATGT+TGG | - | chr4.4:39221679-39221698 | MS.gene28340:CDS | 40.0% | |
| TTTCCCTATGCAGAAAAAGG+AGG | - | chr4.4:39222661-39222680 | MS.gene28340:intron | 40.0% | |
| ! | AAAATGGATTCTCAAGGGAG+CGG | + | chr4.4:39224076-39224095 | None:intergenic | 40.0% |
| ! | GCAAACTTTTGTTGCTGTCA+AGG | + | chr4.4:39221645-39221664 | None:intergenic | 40.0% |
| ! | GTGACTTGTCCCTAAAAGAA+TGG | + | chr4.4:39223200-39223219 | None:intergenic | 40.0% |
| ! | TACTTCCGGAAAAGTACAAG+AGG | - | chr4.4:39221765-39221784 | MS.gene28340:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr4.4:39221232-39221251 | MS.gene28340:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | + | chr4.4:39221251-39221232 | None:intergenic | 40.0% |
| ! | TGTTTCGACCATTTTACCCT+AGG | + | chr4.4:39223222-39223241 | None:intergenic | 40.0% |
| ! | TTGCCTCCTTTTTCTGCATA+GGG | + | chr4.4:39222667-39222686 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr4.4:39221231-39221250 | MS.gene28340:intron | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | + | chr4.4:39221250-39221231 | None:intergenic | 40.0% |
| ! | TTTGCCTCCTTTTTCTGCAT+AGG | + | chr4.4:39222668-39222687 | None:intergenic | 40.0% |
| !! | ACCATTATTGAGGTTGGTCT+CGG | + | chr4.4:39221436-39221455 | None:intergenic | 40.0% |
| !! | CACTTCTGAAGCCAACATTT+AGG | + | chr4.4:39221693-39221712 | None:intergenic | 40.0% |
| !! | CAGTGCTGATGTTAAAGATC+AGG | - | chr4.4:39224328-39224347 | MS.gene28340:intron | 40.0% |
| !! | GAATGAGAGAACTTTTTGGG+TGG | + | chr4.4:39222346-39222365 | None:intergenic | 40.0% |
| !! | TTTTAGGGACAAGTCACCTA+GGG | - | chr4.4:39223203-39223222 | MS.gene28340:CDS | 40.0% |
| AAGATCATCTGTTGCTGGTG+TGG | - | chr4.4:39222039-39222058 | MS.gene28340:intron | 45.0% | |
| ACTACTGAAGACATGTCACC+TGG | - | chr4.4:39223767-39223786 | MS.gene28340:CDS | 45.0% | |
| ATGCTACCTCGTCTGTAGAT+GGG | - | chr4.4:39221364-39221383 | MS.gene28340:intron | 45.0% | |
| GGGGATTTCTTTCATGATGC+TGG | - | chr4.4:39223063-39223082 | MS.gene28340:CDS | 45.0% | |
| GTCTTCAGTAGTGTCTTCAG+TGG | + | chr4.4:39223759-39223778 | None:intergenic | 45.0% | |
| TAAAGATCAGGAGGATCCCA+TGG | - | chr4.4:39224340-39224359 | MS.gene28340:intron | 45.0% | |
| TCTCGGCGAAGAAAAAGACA+AGG | - | chr4.4:39222367-39222386 | MS.gene28340:intron | 45.0% | |
| TCTGGACTATGATACGCCAT+GGG | + | chr4.4:39224359-39224378 | None:intergenic | 45.0% | |
| TGCAGAAAATAAGGAGCGAC+CGG | - | chr4.4:39222544-39222563 | MS.gene28340:intron | 45.0% | |
| TGCTGCACGTGGTTAGTAAT+GGG | - | chr4.4:39221022-39221041 | MS.gene28340:CDS | 45.0% | |
| TGTCAAGGAATGCAGTGGAT+GGG | + | chr4.4:39221630-39221649 | None:intergenic | 45.0% | |
| ! | AAATGGATTCTCAAGGGAGC+GGG | + | chr4.4:39224075-39224094 | None:intergenic | 45.0% |
| ! | AATGGATTTAGTGACGGTGG+GGG | + | chr4.4:39221412-39221431 | None:intergenic | 45.0% |
| ! | CTCGGGAATGGATTTAGTGA+CGG | + | chr4.4:39221418-39221437 | None:intergenic | 45.0% |
| ! | GAATGGATTTAGTGACGGTG+GGG | + | chr4.4:39221413-39221432 | None:intergenic | 45.0% |
| ! | GCTGCCTTGAGCTTTTATCA+CGG | + | chr4.4:39222072-39222091 | None:intergenic | 45.0% |
| ! | GGAATGGATTTAGTGACGGT+GGG | + | chr4.4:39221414-39221433 | None:intergenic | 45.0% |
| ! | GGCTTCCTGATTTGCATTAG+TGG | + | chr4.4:39223738-39223757 | None:intergenic | 45.0% |
| ! | TGCTGGTGCTAATAGTGAAG+AGG | - | chr4.4:39223080-39223099 | MS.gene28340:CDS | 45.0% |
| ! | TGTTGCTTACCTTCGATTGG+TGG | + | chr4.4:39222696-39222715 | None:intergenic | 45.0% |
| !! | ACATAGGCTCTGAAGGAGTT+TGG | - | chr4.4:39223401-39223420 | MS.gene28340:CDS | 45.0% |
| !! | CCATTATTGAGGTTGGTCTC+GGG | + | chr4.4:39221435-39221454 | None:intergenic | 45.0% |
| !! | CTGTGTTGCTTACCTTCGAT+TGG | + | chr4.4:39222699-39222718 | None:intergenic | 45.0% |
| !! | CTTTTAGGGACAAGTCACCT+AGG | - | chr4.4:39223202-39223221 | MS.gene28340:CDS | 45.0% |
| AGAAAATAAGGAGCGACCGG+AGG | - | chr4.4:39222547-39222566 | MS.gene28340:intron | 50.0% | |
| AGAGGTTGCAACAACTGAGG+AGG | - | chr4.4:39224304-39224323 | MS.gene28340:intron | 50.0% | |
| ATCATCTGTTGCTGGTGTGG+AGG | - | chr4.4:39222042-39222061 | MS.gene28340:intron | 50.0% | |
| CATAATCATCCAGCAGAGCC+TGG | + | chr4.4:39222481-39222500 | None:intergenic | 50.0% | |
| CATGCTACCTCGTCTGTAGA+TGG | - | chr4.4:39221363-39221382 | MS.gene28340:intron | 50.0% | |
| CATTACTAACCACGTGCAGC+AGG | + | chr4.4:39221023-39221042 | None:intergenic | 50.0% | |
| CCCGAGACCAACCTCAATAA+TGG | - | chr4.4:39221432-39221451 | MS.gene28340:intron | 50.0% | |
| CTCTGGACTATGATACGCCA+TGG | + | chr4.4:39224360-39224379 | None:intergenic | 50.0% | |
| CTGCTGCACGTGGTTAGTAA+TGG | - | chr4.4:39221021-39221040 | MS.gene28340:CDS | 50.0% | |
| CTGTCAAGGAATGCAGTGGA+TGG | + | chr4.4:39221631-39221650 | None:intergenic | 50.0% | |
| GGAAGAGGTTGCAACAACTG+AGG | - | chr4.4:39224301-39224320 | MS.gene28340:intron | 50.0% | |
| GTCAAGGAATGCAGTGGATG+GGG | + | chr4.4:39221629-39221648 | None:intergenic | 50.0% | |
| GTTCTTCCCATCTACAGACG+AGG | + | chr4.4:39221373-39221392 | None:intergenic | 50.0% | |
| GTTGCTGTCAAGGAATGCAG+TGG | + | chr4.4:39221635-39221654 | None:intergenic | 50.0% | |
| TTTCATTCCCACAGTGGACC+AGG | - | chr4.4:39222460-39222479 | MS.gene28340:intron | 50.0% | |
| TTTGACCTTCGGCGCAAACT+TGG | + | chr4.4:39221304-39221323 | None:intergenic | 50.0% | |
| ! | AATGGATTCTCAAGGGAGCG+GGG | + | chr4.4:39224074-39224093 | None:intergenic | 50.0% |
| ! | GGGAATGGATTTAGTGACGG+TGG | + | chr4.4:39221415-39221434 | None:intergenic | 50.0% |
| !! | ATTGAGGTTGGTCTCGGGAA+TGG | + | chr4.4:39221430-39221449 | None:intergenic | 50.0% |
| !! | GTTGGCTTCAGAAGTGCTTC+AGG | - | chr4.4:39221697-39221716 | MS.gene28340:CDS | 50.0% |
| AATAAGGAGCGACCGGAGGT+AGG | - | chr4.4:39222551-39222570 | MS.gene28340:intron | 55.0% | |
| ATGGATTCTCAAGGGAGCGG+GGG | + | chr4.4:39224073-39224092 | None:intergenic | 55.0% | |
| TAGTGCCAAGTTTGCGCCGA+AGG | - | chr4.4:39221296-39221315 | MS.gene28340:intron | 55.0% | |
| TTCGGCGCAAACTTGGCACT+AGG | + | chr4.4:39221297-39221316 | None:intergenic | 55.0% | |
| AGCAGAGCCTGGTCCACTGT+GGG | + | chr4.4:39222470-39222489 | None:intergenic | 60.0% | |
| CTTGAAGCTCCTGCTGCACG+TGG | - | chr4.4:39221011-39221030 | MS.gene28340:CDS | 60.0% | |
| CACAGTGGACCAGGCTCTGC+TGG | - | chr4.4:39222469-39222488 | MS.gene28340:intron | 65.0% | |
| CAGCAGAGCCTGGTCCACTG+TGG | + | chr4.4:39222471-39222490 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39220987 | 39224439 | 39220987 | ID=MS.gene28340 |
| chr4.4 | mRNA | 39220987 | 39224439 | 39220987 | ID=MS.gene28340.t1;Parent=MS.gene28340 |
| chr4.4 | exon | 39224394 | 39224439 | 39224394 | ID=MS.gene28340.t1.exon1;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39224394 | 39224439 | 39224394 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39223973 | 39224137 | 39223973 | ID=MS.gene28340.t1.exon2;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39223973 | 39224137 | 39223973 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39223640 | 39223833 | 39223640 | ID=MS.gene28340.t1.exon3;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39223640 | 39223833 | 39223640 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39223038 | 39223425 | 39223038 | ID=MS.gene28340.t1.exon4;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39223038 | 39223425 | 39223038 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39222858 | 39222952 | 39222858 | ID=MS.gene28340.t1.exon5;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39222858 | 39222952 | 39222858 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39222721 | 39222752 | 39222721 | ID=MS.gene28340.t1.exon6;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39222721 | 39222752 | 39222721 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39222163 | 39222367 | 39222163 | ID=MS.gene28340.t1.exon7;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39222163 | 39222367 | 39222163 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39221875 | 39222019 | 39221875 | ID=MS.gene28340.t1.exon8;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39221875 | 39222019 | 39221875 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39221630 | 39221739 | 39221630 | ID=MS.gene28340.t1.exon9;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39221630 | 39221739 | 39221630 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| chr4.4 | exon | 39220987 | 39221124 | 39220987 | ID=MS.gene28340.t1.exon10;Parent=MS.gene28340.t1 |
| chr4.4 | CDS | 39220987 | 39221124 | 39220987 | ID=cds.MS.gene28340.t1;Parent=MS.gene28340.t1 |
| Gene Sequence |
| Protein sequence |
