AlfalfaGEDB | MS.gene28382

M. sativa cultivar XinJiangDaYe / MS.gene28382

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28382.t1	XP_003630281.1	91.9	185	8	3	1	178	1	185	1.30E-92	349

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28382.t1	Q8GWK6	46.2	195	72	6	8	177	1	187	2.0e-41	170.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28382.t1	G7LE35	91.9	185	8	3	1	178	1	185	9.5e-93	349.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene28382.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28382.t1	MTR_8g093790	91.892	185	8	3	1	178	1	185	1.01e-119	336
MS.gene28382.t1	MTR_3g096400	51.220	205	67	9	7	178	4	208	3.51e-57	178
MS.gene28382.t1	MTR_4g094302	46.032	189	74	6	10	178	11	191	4.34e-49	157
MS.gene28382.t1	MTR_4g094302	49.167	120	51	3	10	119	11	130	6.24e-36	123
MS.gene28382.t1	MTR_4g081870	38.542	192	91	7	2	169	1	189	2.15e-31	114
MS.gene28382.t1	MTR_2g080010	37.569	181	80	5	10	157	15	195	1.15e-30	114
MS.gene28382.t1	MTR_8g094580	43.038	158	67	6	5	139	2	159	1.76e-29	110
MS.gene28382.t1	MTR_5g041940	37.778	180	87	6	8	162	1	180	2.52e-29	108
MS.gene28382.t1	MTR_7g005280	40.854	164	72	7	8	150	13	172	5.19e-29	108
MS.gene28382.t1	MTR_2157s0010	34.946	186	88	6	4	157	2	186	2.08e-28	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28382.t1	AT5G64530	46.465	198	67	7	8	177	1	187	1.49e-50	161
MS.gene28382.t1	AT5G64530	51.261	119	50	3	8	119	1	118	1.69e-36	124
MS.gene28382.t1	AT1G61110	41.916	167	64	6	10	143	16	182	8.72e-30	111
MS.gene28382.t1	AT1G77450	42.236	161	71	6	1	139	1	161	3.06e-29	108
MS.gene28382.t1	AT2G33480	41.667	156	70	6	8	145	13	165	3.91e-29	108
MS.gene28382.t1	AT2G33480	41.772	158	69	7	8	145	13	167	5.31e-29	108
MS.gene28382.t1	AT1G69490	37.766	188	85	7	2	165	1	180	6.08e-28	105
MS.gene28382.t1	AT1G01720	43.226	155	65	6	8	139	5	159	1.41e-27	105
MS.gene28382.t1	AT5G39610	39.130	161	76	5	1	139	11	171	9.97e-27	102
MS.gene28382.t1	AT3G04070	37.912	182	79	8	1	150	1	180	2.00e-26	103

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Find 47 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTAATTATTAACTAATT+AGG	0.204594	4.4:+9289330	None:intergenic
AAGTACCTTGTATTCAACCT+TGG	0.541631	4.4:-9289732	MS.gene28382:CDS
AATGGATATTGGAAGGAAAT+TGG	0.166312	4.4:-9289789	MS.gene28382:CDS
AATTGAAACAAGTTGGGTAA+TGG	0.457936	4.4:-9289703	MS.gene28382:CDS
ACAAAACCTATAAATAAATT+GGG	0.452536	4.4:-9289762	MS.gene28382:CDS
ACAATCACTTACCGGAGATG+AGG	0.598757	4.4:+9289665	None:intergenic
ACAGGTAAAGCATTGTCAAG+TGG	0.622513	4.4:-9289861	MS.gene28382:intron
ACATCAAGGTGCAAGTGATG+AGG	0.626388	4.4:-9289436	MS.gene28382:CDS
ACTTGTCTCACCATGATCCT+TGG	0.405810	4.4:-9290499	MS.gene28382:CDS
AGCAGTGTGAAGCTTCCTCC+TGG	0.444718	4.4:-9290617	MS.gene28382:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAACACAATCACTTAC+CGG	+	chr4.4:9290322-9290341	None:intergenic	30.0%
AATGCTTTACCTGTTTACAA+AGG	+	chr4.4:9290109-9290128	None:intergenic	30.0%
AATGGATATTGGAAGGAAAT+TGG	-	chr4.4:9290187-9290206	MS.gene28382:intron	30.0%
ATAACTAAAGACAGTGAGAT+TGG	+	chr4.4:9289932-9289951	None:intergenic	30.0%
ATATACATGCCTTTGTAAAC+AGG	-	chr4.4:9290097-9290116	MS.gene28382:intron	30.0%
ATATCATATTTCCTCATCTC+CGG	-	chr4.4:9290300-9290319	MS.gene28382:intron	30.0%
ATGGATATTGGAAGGAAATT+GGG	-	chr4.4:9290188-9290207	MS.gene28382:intron	30.0%
ATTGATCAAGTGACATATAC+TGG	-	chr4.4:9289569-9289588	MS.gene28382:intron	30.0%
GAAAATACTCTTTATGGTTG+TGG	-	chr4.4:9290049-9290068	MS.gene28382:intron	30.0%
TTGATCAAGATCATCATCTA+AGG	+	chr4.4:9290617-9290636	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	9289344	9290654	9289344	ID=MS.gene28382
chr4.4	mRNA	9289344	9290654	9289344	ID=MS.gene28382.t1;Parent=MS.gene28382
chr4.4	exon	9290489	9290654	9290489	ID=MS.gene28382.t1.exon1;Parent=MS.gene28382.t1
chr4.4	CDS	9290489	9290654	9290489	ID=cds.MS.gene28382.t1;Parent=MS.gene28382.t1
chr4.4	exon	9289677	9289879	9289677	ID=MS.gene28382.t1.exon2;Parent=MS.gene28382.t1
chr4.4	CDS	9289677	9289879	9289677	ID=cds.MS.gene28382.t1;Parent=MS.gene28382.t1
chr4.4	exon	9289344	9289511	9289344	ID=MS.gene28382.t1.exon3;Parent=MS.gene28382.t1
chr4.4	CDS	9289344	9289511	9289344	ID=cds.MS.gene28382.t1;Parent=MS.gene28382.t1

Gene Sequence

>MS.gene28382

ATGATGGGGAGTGAAAGCAGTGTGAAGCTTCCTCCTGGGTTTTACTTTGATCCAACGGATGAAGAACTAGTCCTTCATTTTCTCTATTCCAAGGCTTCTTTACCATATCATCCTAGCATCATACCTGAACTTCACTTGTCTCACCATGATCCTTGGGAAATATACGGTATGTCTTATAGTGCTAGGTATATTATATATATTTCATATAATATTTTCAATTTCAATATTGATCAAGTGACATATACTGGATATTTAGTTGACCATATATGCATGCATATATAGATAAAACTTCATTCCTATATATATAATACCAATTTATTTTGTCTTAACACTTTGATTCTCATTAAAATTAGCTCTCATAGTCCAAAATTCAGCTAGAAAGTAAGTAAGTAAAATCTAACAAAAAGATATTCTAAATACGATTTAAATTGGGATACTCTCAATCGATTTGACCTTAACATATGTTATTGCTAATTAAAAATATAGTTTGTGATATATGTAATCTTCCGCCAAAAATCAATTATATGCTATGAGATCTTTTTTTTTTTAAATTGAATATCGATTCAATGATAGACTAATCTCGGACCAATCTCACTGTCTTTAGTTATAGATTTATTATCTATCAAAGTTTTATCTGAAATCCATGTAAAAAAATATATCCGTTATTTGTGGAAAATTATCCAAAATTTATGTAAAACCTATCTGGAAAATACTCTTTATGGTTGTGGATGTGTATAATAACACCCCCAAGAAATATACATGCCTTTGTAAACAGGTAAAGCATTGTCAAGTGGAAATGAGCACTACTTTTTCACCGAAGTGAAGGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGATCACAAAACCTATAAATAAATTGGGAATGAAGAAGTACCTTGTATTCAACCTTGGGGAAGGAATTGAAACAAGTTGGGTAATGGAAGAATATCATATTTCCTCATCTCCGGTAAGTGATTGTGTTTTGTTTTGTTAACTACCTATTCATAAATCACAACAAATTACTTTACTAAGAAAAAAATCATGACCAATTAATTAATGTGGAAAAAAATTAACATGAAGAACATAAAATTAAATTGATTTGTATCAATTTATTTTTGATTGTGTGAGACAGGATCATAATTGGAGCAGATGGGTTTTATGCAAAGTTTATGAAAAGAAGATGTCACATCAAGGTGCAAGTGATGAGGATATTGATGATAATGGAACAGATGTGTCATGGCTAGATGAAGTGTTTATGTCCTTAGATGATGATCTTGATCAAACAAGCCTACCTAATTAG

Protein sequence

>MS.gene28382.t1

MMGSESSVKLPPGFYFDPTDEELVLHFLYSKASLPYHPSIIPELHLSHHDPWEIYGKALSSGNEHYFFTEVKENRSTENGYWKEIGITKPINKLGMKKYLVFNLGEGIETSWVMEEYHISSSPDHNWSRWVLCKVYEKKMSHQGASDEDIDDNGTDVSWLDEVFMSLDDDLDQTSLPN