Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28433.t1 | AET04670.2 | 91.7 | 253 | 21 | 0 | 1 | 253 | 1 | 253 | 2.60E-121 | 444.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28433.t1 | C0HIA3 | 50.2 | 215 | 104 | 3 | 1 | 214 | 1 | 213 | 5.9e-50 | 199.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28433.t1 | G7LCB1 | 91.7 | 253 | 21 | 0 | 1 | 253 | 1 | 253 | 1.8e-121 | 444.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28433.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28433.t1 | MTR_8g092810 | 94.862 | 253 | 13 | 0 | 1 | 253 | 1 | 253 | 4.90e-174 | 488 |
| MS.gene28433.t1 | MTR_2g031870 | 65.323 | 248 | 77 | 1 | 1 | 248 | 1 | 239 | 7.26e-109 | 316 |
| MS.gene28433.t1 | MTR_8g494240 | 64.800 | 250 | 73 | 4 | 1 | 248 | 1 | 237 | 2.13e-105 | 307 |
| MS.gene28433.t1 | MTR_8g494240 | 64.800 | 250 | 73 | 4 | 1 | 248 | 1 | 237 | 3.31e-105 | 307 |
| MS.gene28433.t1 | MTR_8g494240 | 64.800 | 250 | 73 | 4 | 1 | 248 | 1 | 237 | 9.89e-104 | 307 |
| MS.gene28433.t1 | MTR_8g494240 | 42.857 | 112 | 34 | 3 | 3 | 114 | 304 | 385 | 8.89e-16 | 76.6 |
| MS.gene28433.t1 | MTR_2g031870 | 56.452 | 248 | 73 | 2 | 1 | 248 | 1 | 213 | 5.50e-84 | 252 |
| MS.gene28433.t1 | MTR_0095s0040 | 67.532 | 154 | 48 | 1 | 1 | 152 | 1 | 154 | 1.45e-68 | 212 |
| MS.gene28433.t1 | MTR_4g097130 | 39.015 | 264 | 132 | 5 | 1 | 248 | 1 | 251 | 9.99e-54 | 176 |
| MS.gene28433.t1 | MTR_4g097130 | 39.015 | 264 | 132 | 5 | 1 | 248 | 1 | 251 | 1.21e-53 | 176 |
| MS.gene28433.t1 | MTR_4g097130 | 37.918 | 269 | 133 | 5 | 1 | 248 | 1 | 256 | 1.77e-52 | 173 |
| MS.gene28433.t1 | MTR_5g015340 | 41.810 | 232 | 130 | 3 | 1 | 231 | 1 | 228 | 1.98e-51 | 169 |
| MS.gene28433.t1 | MTR_5g015340 | 41.810 | 232 | 130 | 3 | 1 | 231 | 1 | 228 | 1.98e-51 | 169 |
| MS.gene28433.t1 | MTR_5g015340 | 40.650 | 246 | 132 | 4 | 1 | 245 | 1 | 233 | 3.28e-50 | 169 |
| MS.gene28433.t1 | MTR_1g088180 | 51.969 | 127 | 49 | 3 | 125 | 251 | 295 | 409 | 8.68e-32 | 121 |
| MS.gene28433.t1 | MTR_8g018410 | 37.755 | 196 | 101 | 5 | 1 | 187 | 1 | 184 | 2.24e-29 | 112 |
| MS.gene28433.t1 | MTR_2g099610 | 34.783 | 207 | 114 | 4 | 1 | 187 | 1 | 206 | 7.85e-26 | 103 |
| MS.gene28433.t1 | MTR_1g041765 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 4.97e-25 | 98.6 |
| MS.gene28433.t1 | MTR_2g031880 | 48.624 | 109 | 48 | 2 | 60 | 168 | 2 | 102 | 1.37e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28433.t1 | AT1G49950 | 46.899 | 258 | 111 | 9 | 1 | 250 | 1 | 240 | 7.15e-66 | 207 |
| MS.gene28433.t1 | AT1G49950 | 46.899 | 258 | 111 | 9 | 1 | 250 | 1 | 240 | 7.15e-66 | 207 |
| MS.gene28433.t1 | AT1G49950 | 46.899 | 258 | 111 | 9 | 1 | 250 | 1 | 240 | 7.15e-66 | 207 |
| MS.gene28433.t1 | AT5G67580 | 39.224 | 232 | 136 | 4 | 1 | 229 | 1 | 230 | 8.98e-45 | 152 |
| MS.gene28433.t1 | AT5G67580 | 39.224 | 232 | 136 | 4 | 1 | 229 | 1 | 230 | 8.98e-45 | 152 |
| MS.gene28433.t1 | AT3G49850 | 36.530 | 219 | 137 | 2 | 1 | 219 | 1 | 217 | 2.44e-40 | 141 |
| MS.gene28433.t1 | AT3G49850 | 36.530 | 219 | 137 | 2 | 1 | 219 | 1 | 217 | 2.44e-40 | 141 |
| MS.gene28433.t1 | AT1G72740 | 36.316 | 190 | 113 | 3 | 1 | 187 | 1 | 185 | 1.26e-28 | 110 |
| MS.gene28433.t1 | AT1G72740 | 36.957 | 184 | 108 | 3 | 1 | 181 | 1 | 179 | 2.89e-27 | 106 |
| MS.gene28433.t1 | AT1G17520 | 35.638 | 188 | 116 | 1 | 1 | 183 | 1 | 188 | 8.08e-25 | 100 |
| MS.gene28433.t1 | AT1G17520 | 34.737 | 190 | 119 | 1 | 1 | 185 | 1 | 190 | 2.44e-24 | 99.0 |
| MS.gene28433.t1 | AT1G17520 | 35.979 | 189 | 115 | 2 | 1 | 183 | 1 | 189 | 7.99e-24 | 97.8 |
| MS.gene28433.t1 | AT1G17520 | 35.079 | 191 | 118 | 2 | 1 | 185 | 1 | 191 | 2.31e-23 | 96.3 |
Find 68 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGATATGCTGGAAATTA+AGG | 0.140872 | 4.4:+8740692 | MS.gene28433:CDS |
| AACTATTGCTTCTTTCATTA+AGG | 0.194532 | 4.4:+8741643 | MS.gene28433:CDS |
| AAACCGACCCATGTTATTAT+TGG | 0.212298 | 4.4:+8744083 | MS.gene28433:CDS |
| ACTCTCAGCTAGCAATAAAA+AGG | 0.232134 | 4.4:+8740568 | MS.gene28433:CDS |
| TAGATATTGCTTCCACTATA+AGG | 0.286103 | 4.4:-8741589 | None:intergenic |
| TGTGGGCTGGATAGGATAAA+TGG | 0.333746 | 4.4:+8740502 | MS.gene28433:intron |
| TGAAGCATGGCGTAGGTAAA+TGG | 0.346059 | 4.4:+8740302 | MS.gene28433:CDS |
| TTCCTCTATCTGAATATGCT+TGG | 0.349369 | 4.4:-8744059 | None:intergenic |
| AAATAAGCTGTCAGCAAAAC+TGG | 0.353881 | 4.4:+8743071 | MS.gene28433:CDS |
| TCCTCTATCTGAATATGCTT+GGG | 0.366075 | 4.4:-8744058 | None:intergenic |
| GGCTGAGATAGACTTGGAAT+TGG | 0.370284 | 4.4:+8744191 | MS.gene28433:CDS |
| CTATTAAATCTGACAGGGGT+GGG | 0.403434 | 4.4:+8744124 | MS.gene28433:CDS |
| ACAGATATGCTGGAAATTAA+GGG | 0.415666 | 4.4:+8740693 | MS.gene28433:CDS |
| GAGGAAGCGGCTCTCAAAGC+TGG | 0.427705 | 4.4:+8740274 | MS.gene28433:CDS |
| ACGGAGTCGTCACGCTGTTC+TGG | 0.440395 | 4.4:-8740606 | None:intergenic |
| TATTAAATCTGACAGGGGTG+GGG | 0.448513 | 4.4:+8744125 | MS.gene28433:CDS |
| TCAAGTTAAAACAGATATGC+TGG | 0.453383 | 4.4:+8740683 | MS.gene28433:CDS |
| AATCTGCCGGTGCGCAGTAT+TGG | 0.455578 | 4.4:-8743044 | None:intergenic |
| ATTAAATCTGACAGGGGTGG+GGG | 0.463232 | 4.4:+8744126 | MS.gene28433:CDS |
| AAGCCTCTATTAAATCTGAC+AGG | 0.463302 | 4.4:+8744118 | MS.gene28433:CDS |
| TTCACACTTCAATCAAGAGC+AGG | 0.468692 | 4.4:-8744744 | None:intergenic |
| AATATGAGTCTGAAGGCAAA+TGG | 0.474909 | 4.4:+8740528 | MS.gene28433:CDS |
| ACCCAAGCATATTCAGATAG+AGG | 0.477513 | 4.4:+8744057 | MS.gene28433:CDS |
| AGGCAAATGGATCATCCTCC+GGG | 0.485206 | 4.4:+8740541 | MS.gene28433:CDS |
| ACCCCTGTCAGATTTAATAG+AGG | 0.496957 | 4.4:-8744121 | None:intergenic |
| CCTCCCTTCCAATAATAACA+TGG | 0.497696 | 4.4:-8744091 | None:intergenic |
| AAGGCAAATGGATCATCCTC+CGG | 0.503120 | 4.4:+8740540 | MS.gene28433:CDS |
| CAGATTGGACAACCTTATAG+TGG | 0.503998 | 4.4:+8741577 | MS.gene28433:intron |
| CTGGTGGATCTTGTATCTAG+TGG | 0.509226 | 4.4:+8743090 | MS.gene28433:CDS |
| GTCCGGAAAGGTCTATCAAA+AGG | 0.511188 | 4.4:+8740715 | MS.gene28433:CDS |
| TATGCTGGAAATTAAGGGTC+CGG | 0.513448 | 4.4:+8740698 | MS.gene28433:CDS |
| TTATATTTCAGGTGAAACAT+AGG | 0.516350 | 4.4:+8744019 | MS.gene28433:intron |
| CGACCCATGTTATTATTGGA+AGG | 0.524027 | 4.4:+8744087 | MS.gene28433:CDS |
| ATCTAGTGGAAAACTGATCA+AGG | 0.537966 | 4.4:+8743104 | MS.gene28433:CDS |
| AAAGTCCATGTCTTTACAAG+AGG | 0.539777 | 4.4:+8744221 | MS.gene28433:CDS |
| CATAGATTATCAGAAAAGAA+AGG | 0.554656 | 4.4:+8744170 | MS.gene28433:CDS |
| AAGAAAGGCTGAGATAGACT+TGG | 0.557326 | 4.4:+8744185 | MS.gene28433:CDS |
| CCGCTCAAATATCGATCTCA+AGG | 0.560055 | 4.4:+8740369 | MS.gene28433:CDS |
| ATGGTCATCAGAAGAGGAAG+CGG | 0.577986 | 4.4:+8740261 | MS.gene28433:CDS |
| ACAGAAATGGTCATCAGAAG+AGG | 0.578108 | 4.4:+8740255 | MS.gene28433:CDS |
| AGCAATATCTAGCTTGAATG+AGG | 0.580943 | 4.4:+8741601 | MS.gene28433:CDS |
| GACCCATGTTATTATTGGAA+GGG | 0.581327 | 4.4:+8744088 | MS.gene28433:CDS |
| CTATCTGAATATGCTTGGGT+AGG | 0.584721 | 4.4:-8744054 | None:intergenic |
| ATGGAGAAATATGAGTCTGA+AGG | 0.599241 | 4.4:+8740521 | MS.gene28433:CDS |
| TGGGTGCTACTAGACAGAAA+TGG | 0.601772 | 4.4:+8740242 | MS.gene28433:CDS |
| AGCCTCTATTAAATCTGACA+GGG | 0.601960 | 4.4:+8744119 | MS.gene28433:CDS |
| CTTCCAATAATAACATGGGT+CGG | 0.603083 | 4.4:-8744086 | None:intergenic |
| CCATGTTATTATTGGAAGGG+AGG | 0.603196 | 4.4:+8744091 | MS.gene28433:CDS |
| GGAGTTGTGAAGCATGGCGT+AGG | 0.603718 | 4.4:+8740295 | MS.gene28433:CDS |
| TGCTAGCTGAGAGTTGTCCC+CGG | 0.606787 | 4.4:-8740559 | None:intergenic |
| TCACACTTCAATCAAGAGCA+GGG | 0.606896 | 4.4:-8744743 | None:intergenic |
| CTCCCTTCCAATAATAACAT+GGG | 0.607660 | 4.4:-8744090 | None:intergenic |
| TCTATTAAATCTGACAGGGG+TGG | 0.615717 | 4.4:+8744123 | MS.gene28433:CDS |
| AAAGCTGGAGTTGTGAAGCA+TGG | 0.620365 | 4.4:+8740289 | MS.gene28433:CDS |
| TAAGCTGTCAGCAAAACTGG+TGG | 0.625095 | 4.4:+8743074 | MS.gene28433:CDS |
| TACAACACATGGTTAAACTC+AGG | 0.630999 | 4.4:-8740343 | None:intergenic |
| CCTTGAGATCGATATTTGAG+CGG | 0.641849 | 4.4:-8740369 | None:intergenic |
| TGGAAATTAAGGGTCCGGAA+AGG | 0.649175 | 4.4:+8740703 | MS.gene28433:CDS |
| TCTAGCTTGAATGAGGTCGA+TGG | 0.649394 | 4.4:+8741608 | MS.gene28433:CDS |
| GTAGAACCAATACTGCGCAC+CGG | 0.653755 | 4.4:+8743038 | MS.gene28433:intron |
| GATTACCTCTTGTAAAGACA+TGG | 0.659824 | 4.4:-8744226 | None:intergenic |
| GCCTCTATTAAATCTGACAG+GGG | 0.668262 | 4.4:+8744120 | MS.gene28433:CDS |
| TAAATGGAGTAAGATACTCA+AGG | 0.669197 | 4.4:+8740318 | MS.gene28433:CDS |
| TTGAGCGGATATACAACACA+TGG | 0.677687 | 4.4:-8740354 | None:intergenic |
| AGTAACAAGATTTACAGCCA+CGG | 0.683382 | 4.4:-8740625 | None:intergenic |
| AGAACAGCGTGACGACTCCG+TGG | 0.703510 | 4.4:+8740608 | MS.gene28433:CDS |
| TAGCTGAGAGTTGTCCCCGG+AGG | 0.710409 | 4.4:-8740556 | None:intergenic |
| GGCAAATGGATCATCCTCCG+GGG | 0.731603 | 4.4:+8740542 | MS.gene28433:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAGAAAAAAAAAAG+TGG | - | chr4.4:8743675-8743694 | None:intergenic | 10.0% |
| !! | AATACATTATTATATGTAAA+GGG | - | chr4.4:8740438-8740457 | None:intergenic | 10.0% |
| !!! | TGCTTTTAAATTATTAAATT+CGG | + | chr4.4:8741703-8741722 | MS.gene28433:intron | 10.0% |
| !! | AAATTAAACAAATAACATCA+TGG | - | chr4.4:8741848-8741867 | None:intergenic | 15.0% |
| !! | ACTAAACAAAACAAAAAATA+TGG | - | chr4.4:8740747-8740766 | None:intergenic | 15.0% |
| !! | ATAATGTATTGAATAAATGT+TGG | + | chr4.4:8740448-8740467 | MS.gene28433:intron | 15.0% |
| !! | CAATACATTATTATATGTAA+AGG | - | chr4.4:8740439-8740458 | None:intergenic | 15.0% |
| !! | CTAAACAAAACAAAAAATAT+GGG | - | chr4.4:8740746-8740765 | None:intergenic | 15.0% |
| !! | TAAACAAAACAAAAAATATG+GGG | - | chr4.4:8740745-8740764 | None:intergenic | 15.0% |
| !! | TAGTATGGTAATTTATTTAA+TGG | + | chr4.4:8740763-8740782 | MS.gene28433:intron | 15.0% |
| !! | TATAAGATGCAATTAAATAA+GGG | - | chr4.4:8740945-8740964 | None:intergenic | 15.0% |
| !! | TCAAAATGAAAAATTTATCT+TGG | + | chr4.4:8740825-8740844 | MS.gene28433:intron | 15.0% |
| !! | TGTTACATAATACATTAATA+GGG | + | chr4.4:8744430-8744449 | MS.gene28433:intron | 15.0% |
| !! | TTCTTCATTTATATATATCA+AGG | + | chr4.4:8742224-8742243 | MS.gene28433:intron | 15.0% |
| !!! | ATTTTGATTAGTACAAAAAT+TGG | + | chr4.4:8741864-8741883 | MS.gene28433:intron | 15.0% |
| !!! | ATTTTTTGTTTTGTTTAGTA+TGG | + | chr4.4:8740748-8740767 | MS.gene28433:intron | 15.0% |
| !!! | GTTTTTGTTCTTTATATTTT+AGG | + | chr4.4:8743887-8743906 | MS.gene28433:intron | 15.0% |
| !! | AAATAGAACTTCTAATATCT+AGG | + | chr4.4:8743631-8743650 | MS.gene28433:intron | 20.0% |
| !! | AAGGTATAATTATGATTTCT+AGG | + | chr4.4:8741662-8741681 | MS.gene28433:intron | 20.0% |
| !! | AGATATTAGAAGTTCTATTT+AGG | - | chr4.4:8743631-8743650 | None:intergenic | 20.0% |
| !! | ATATAATTTAATTGTGCTAC+CGG | + | chr4.4:8741363-8741382 | MS.gene28433:intron | 20.0% |
| !! | ATGTATAACGCAAATAAAAT+TGG | - | chr4.4:8744554-8744573 | None:intergenic | 20.0% |
| !! | ATTTACATATGACGTTATTT+GGG | + | chr4.4:8744524-8744543 | MS.gene28433:intron | 20.0% |
| !! | CATTTCAATATTTAGATGAT+CGG | - | chr4.4:8744619-8744638 | None:intergenic | 20.0% |
| !! | CTAAATATTGAAATGTGATT+AGG | + | chr4.4:8744624-8744643 | MS.gene28433:intron | 20.0% |
| !! | CTATAAGATGCAATTAAATA+AGG | - | chr4.4:8740946-8740965 | None:intergenic | 20.0% |
| !! | CTGTTACATAATACATTAAT+AGG | + | chr4.4:8744429-8744448 | MS.gene28433:intron | 20.0% |
| !! | TATTTACATATGACGTTATT+TGG | + | chr4.4:8744523-8744542 | MS.gene28433:intron | 20.0% |
| !!! | AATCTATGTCATACTTTTTA+GGG | - | chr4.4:8744158-8744177 | None:intergenic | 20.0% |
| !!! | TAATCTATGTCATACTTTTT+AGG | - | chr4.4:8744159-8744178 | None:intergenic | 20.0% |
| !!! | TACATTTTCTAATGTTTACA+TGG | + | chr4.4:8743829-8743848 | MS.gene28433:intron | 20.0% |
| ! | AAAAATCACTAAAATCACTG+CGG | + | chr4.4:8744373-8744392 | MS.gene28433:intron | 25.0% |
| ! | AAAGCAGAACAAATAAAAGT+TGG | - | chr4.4:8741689-8741708 | None:intergenic | 25.0% |
| ! | AACTATTGCTTCTTTCATTA+AGG | + | chr4.4:8741643-8741662 | MS.gene28433:CDS | 25.0% |
| ! | AACTTCTTAACAAATGTCTT+TGG | - | chr4.4:8740806-8740825 | None:intergenic | 25.0% |
| ! | AAGCAGAACAAATAAAAGTT+GGG | - | chr4.4:8741688-8741707 | None:intergenic | 25.0% |
| ! | ACAAATAACATCATGGAATA+TGG | - | chr4.4:8741841-8741860 | None:intergenic | 25.0% |
| ! | ACTTCTTAACAAATGTCTTT+GGG | - | chr4.4:8740805-8740824 | None:intergenic | 25.0% |
| ! | AGAAGAAAATGTAAGAAGTA+GGG | + | chr4.4:8742125-8742144 | MS.gene28433:intron | 25.0% |
| ! | ATAAACCAATAGGGATATTA+CGG | - | chr4.4:8741029-8741048 | None:intergenic | 25.0% |
| ! | ATGTAACAGTAGTATTACAA+CGG | - | chr4.4:8744418-8744437 | None:intergenic | 25.0% |
| ! | ATTTATTGTGAGCCATATTT+GGG | + | chr4.4:8743942-8743961 | MS.gene28433:intron | 25.0% |
| ! | CAAAACAAGAGAATGAAATT+AGG | - | chr4.4:8741466-8741485 | None:intergenic | 25.0% |
| ! | CAATCTGTATAATGTAAACA+TGG | - | chr4.4:8741564-8741583 | None:intergenic | 25.0% |
| ! | CAATTAGAGATCTTACTAAT+GGG | + | chr4.4:8743989-8744008 | MS.gene28433:intron | 25.0% |
| ! | CATAGATTATCAGAAAAGAA+AGG | + | chr4.4:8744170-8744189 | MS.gene28433:CDS | 25.0% |
| ! | CATCAAATGATATTGAAACA+TGG | + | chr4.4:8743298-8743317 | MS.gene28433:intron | 25.0% |
| ! | CATGTTTACATTATACAGAT+TGG | + | chr4.4:8741562-8741581 | MS.gene28433:intron | 25.0% |
| ! | TAATACATTAATAGGGAACA+TGG | + | chr4.4:8744437-8744456 | MS.gene28433:intron | 25.0% |
| ! | TAGAAGAAAATGTAAGAAGT+AGG | + | chr4.4:8742124-8742143 | MS.gene28433:intron | 25.0% |
| ! | TAGCAAAATCAAAGCAATTA+TGG | - | chr4.4:8742617-8742636 | None:intergenic | 25.0% |
| ! | TCAATTAGAGATCTTACTAA+TGG | + | chr4.4:8743988-8744007 | MS.gene28433:intron | 25.0% |
| !! | AAAAAAAAAAGTGGCTTGTA+AGG | - | chr4.4:8743666-8743685 | None:intergenic | 25.0% |
| !! | TTATATTTCAGGTGAAACAT+AGG | + | chr4.4:8744019-8744038 | MS.gene28433:intron | 25.0% |
| !!! | AATATCCCTATTGGTTTATT+TGG | + | chr4.4:8741030-8741049 | MS.gene28433:intron | 25.0% |
| !!! | ATATCTGTTTTAACTTGAAG+AGG | - | chr4.4:8740681-8740700 | None:intergenic | 25.0% |
| !!! | ATGCTATTTCAACTTTCAAT+TGG | + | chr4.4:8742871-8742890 | MS.gene28433:intron | 25.0% |
| !!! | TTTCACAACGTATTTTTTTG+TGG | + | chr4.4:8743208-8743227 | MS.gene28433:intron | 25.0% |
| AAAATTATCTTCCACTTCCA+AGG | - | chr4.4:8741105-8741124 | None:intergenic | 30.0% | |
| AACAGATATGCTGGAAATTA+AGG | + | chr4.4:8740692-8740711 | MS.gene28433:CDS | 30.0% | |
| AAGTTCTATAGCATTCCATT+TGG | + | chr4.4:8742947-8742966 | MS.gene28433:intron | 30.0% | |
| ACAGATATGCTGGAAATTAA+GGG | + | chr4.4:8740693-8740712 | MS.gene28433:CDS | 30.0% | |
| ATATACTAAGCTTCCATTCA+TGG | - | chr4.4:8742801-8742820 | None:intergenic | 30.0% | |
| ATCAAAGCAATTATGGTGTA+CGG | - | chr4.4:8742610-8742629 | None:intergenic | 30.0% | |
| ATCTCAATGTTTGGTTATGT+GGG | + | chr4.4:8740485-8740504 | MS.gene28433:intron | 30.0% | |
| ATTGCTTACACATGAATAGA+AGG | + | chr4.4:8742247-8742266 | MS.gene28433:intron | 30.0% | |
| CATTTATTGTGAGCCATATT+TGG | + | chr4.4:8743941-8743960 | MS.gene28433:intron | 30.0% | |
| CTCAGTTAAGGATTCAAAAA+AGG | - | chr4.4:8740917-8740936 | None:intergenic | 30.0% | |
| TAAATGGAGTAAGATACTCA+AGG | + | chr4.4:8740318-8740337 | MS.gene28433:CDS | 30.0% | |
| TAGATATTGCTTCCACTATA+AGG | - | chr4.4:8741592-8741611 | None:intergenic | 30.0% | |
| TATTGTATGTTTGCATGAGA+TGG | - | chr4.4:8743165-8743184 | None:intergenic | 30.0% | |
| TCAAGTTAAAACAGATATGC+TGG | + | chr4.4:8740683-8740702 | MS.gene28433:CDS | 30.0% | |
| TCAATTGGCTAAATCTTATG+TGG | + | chr4.4:8742886-8742905 | MS.gene28433:intron | 30.0% | |
| TGAGATCTTCAAAAGATATC+CGG | + | chr4.4:8741124-8741143 | MS.gene28433:intron | 30.0% | |
| TTCGACCAAATAAACCAATA+GGG | - | chr4.4:8741038-8741057 | None:intergenic | 30.0% | |
| TTTCGACCAAATAAACCAAT+AGG | - | chr4.4:8741039-8741058 | None:intergenic | 30.0% | |
| ! | AGAGCTAGTTTAGAAAAAGA+AGG | + | chr4.4:8742657-8742676 | MS.gene28433:intron | 30.0% |
| ! | CATTTCAGAGACTTTCTTTT+AGG | + | chr4.4:8744663-8744682 | MS.gene28433:intron | 30.0% |
| ! | GTCAAACATTTACTCTAAAG+AGG | + | chr4.4:8743432-8743451 | MS.gene28433:intron | 30.0% |
| ! | GTTTTATATTTACCGCTTCA+TGG | + | chr4.4:8743398-8743417 | MS.gene28433:intron | 30.0% |
| ! | TTTTATCCAATCACCAGTAT+CGG | + | chr4.4:8743231-8743250 | MS.gene28433:intron | 30.0% |
| !! | TAGAAAAGTATCCAACCAAA+TGG | - | chr4.4:8742965-8742984 | None:intergenic | 30.0% |
| !!! | AGCTTATTTTTGAAATCTGC+CGG | - | chr4.4:8743060-8743079 | None:intergenic | 30.0% |
| !!! | ATTGGTTTTTCCATCCAAAA+AGG | - | chr4.4:8742301-8742320 | None:intergenic | 30.0% |
| AAAATCACTGCGGTAAATCT+CGG | + | chr4.4:8744383-8744402 | MS.gene28433:intron | 35.0% | |
| AAACCGACCCATGTTATTAT+TGG | + | chr4.4:8744083-8744102 | MS.gene28433:CDS | 35.0% | |
| AAATAAGCTGTCAGCAAAAC+TGG | + | chr4.4:8743071-8743090 | MS.gene28433:CDS | 35.0% | |
| AACAGTAGTATTACAACGGA+AGG | - | chr4.4:8744414-8744433 | None:intergenic | 35.0% | |
| AAGCATACACTGTCAAAATG+AGG | - | chr4.4:8741539-8741558 | None:intergenic | 35.0% | |
| AAGCCTCTATTAAATCTGAC+AGG | + | chr4.4:8744118-8744137 | MS.gene28433:CDS | 35.0% | |
| AAGGTGACTACCTTGTAATA+TGG | + | chr4.4:8741925-8741944 | MS.gene28433:intron | 35.0% | |
| AATATGAGTCTGAAGGCAAA+TGG | + | chr4.4:8740528-8740547 | MS.gene28433:CDS | 35.0% | |
| AATCACAAGTCACAATAACC+AGG | - | chr4.4:8742777-8742796 | None:intergenic | 35.0% | |
| ACATTGAGATCCACATTTGA+CGG | - | chr4.4:8740475-8740494 | None:intergenic | 35.0% | |
| ACCTTCTACATAGAGTTCAA+AGG | - | chr4.4:8742378-8742397 | None:intergenic | 35.0% | |
| ACTCTCAGCTAGCAATAAAA+AGG | + | chr4.4:8740568-8740587 | MS.gene28433:CDS | 35.0% | |
| ACTTTACAACCCTATCCTAT+GGG | + | chr4.4:8743257-8743276 | MS.gene28433:intron | 35.0% | |
| AGATCTTCAAAAGATATCCG+GGG | + | chr4.4:8741126-8741145 | MS.gene28433:intron | 35.0% | |
| AGCCTCTATTAAATCTGACA+GGG | + | chr4.4:8744119-8744138 | MS.gene28433:CDS | 35.0% | |
| AGTAACAAGATTTACAGCCA+CGG | - | chr4.4:8740628-8740647 | None:intergenic | 35.0% | |
| ATACATAAAACCTGCTTGTG+AGG | + | chr4.4:8744568-8744587 | MS.gene28433:intron | 35.0% | |
| ATCTAGTGGAAAACTGATCA+AGG | + | chr4.4:8743104-8743123 | MS.gene28433:CDS | 35.0% | |
| ATGAGAATAGCACCCAAATA+TGG | - | chr4.4:8743957-8743976 | None:intergenic | 35.0% | |
| ATGGAGAAATATGAGTCTGA+AGG | + | chr4.4:8740521-8740540 | MS.gene28433:CDS | 35.0% | |
| ATGTTCCTACATTAACCCAT+AGG | - | chr4.4:8743275-8743294 | None:intergenic | 35.0% | |
| CAAATGTGGATCTCAATGTT+TGG | + | chr4.4:8740476-8740495 | MS.gene28433:intron | 35.0% | |
| CACAATAACCAGGTTTCAAA+AGG | - | chr4.4:8742767-8742786 | None:intergenic | 35.0% | |
| CCTTCTACATAGAGTTCAAA+GGG | - | chr4.4:8742377-8742396 | None:intergenic | 35.0% | |
| CTACATTAACCCATAGGATA+GGG | - | chr4.4:8743269-8743288 | None:intergenic | 35.0% | |
| CTCCCTTCCAATAATAACAT+GGG | - | chr4.4:8744093-8744112 | None:intergenic | 35.0% | |
| CTCTCAGCTAGCAATAAAAA+GGG | + | chr4.4:8740569-8740588 | MS.gene28433:CDS | 35.0% | |
| CTTAGTATATCTTGACCCTT+TGG | + | chr4.4:8742811-8742830 | MS.gene28433:intron | 35.0% | |
| CTTAGTATTTGTCCATGAAG+CGG | - | chr4.4:8743413-8743432 | None:intergenic | 35.0% | |
| CTTCCAATAATAACATGGGT+CGG | - | chr4.4:8744089-8744108 | None:intergenic | 35.0% | |
| GAAAAACCAAAGTCTCACAT+TGG | + | chr4.4:8743472-8743491 | MS.gene28433:intron | 35.0% | |
| GACCCATGTTATTATTGGAA+GGG | + | chr4.4:8744088-8744107 | MS.gene28433:CDS | 35.0% | |
| GAGATCTTCAAAAGATATCC+GGG | + | chr4.4:8741125-8741144 | MS.gene28433:intron | 35.0% | |
| GATCTCAATGTTTGGTTATG+TGG | + | chr4.4:8740484-8740503 | MS.gene28433:intron | 35.0% | |
| TAAAGTCTCGTCTTGTGTAT+TGG | - | chr4.4:8741178-8741197 | None:intergenic | 35.0% | |
| TACAACACATGGTTAAACTC+AGG | - | chr4.4:8740346-8740365 | None:intergenic | 35.0% | |
| TACATAAAACCTGCTTGTGA+GGG | + | chr4.4:8744569-8744588 | MS.gene28433:intron | 35.0% | |
| TATGTCCTATTCTGCAAACA+AGG | - | chr4.4:8741344-8741363 | None:intergenic | 35.0% | |
| TCAAGCTTCTTTGTGCAAAT+AGG | - | chr4.4:8742717-8742736 | None:intergenic | 35.0% | |
| TCCTCTATCTGAATATGCTT+GGG | - | chr4.4:8744061-8744080 | None:intergenic | 35.0% | |
| TCTATAGCATTCCATTTGGT+TGG | + | chr4.4:8742951-8742970 | MS.gene28433:intron | 35.0% | |
| TGGTTTATTTGGTCGAAATG+CGG | + | chr4.4:8741041-8741060 | MS.gene28433:intron | 35.0% | |
| TTCCTCTATCTGAATATGCT+TGG | - | chr4.4:8744062-8744081 | None:intergenic | 35.0% | |
| TTGTGAATTATCCTTGGAAG+TGG | + | chr4.4:8741091-8741110 | MS.gene28433:intron | 35.0% | |
| ! | AAAAAAAGTGGCTTGTAAGG+AGG | - | chr4.4:8743663-8743682 | None:intergenic | 35.0% |
| ! | AAATGTGATTAGGTTGCAGA+TGG | + | chr4.4:8744634-8744653 | MS.gene28433:intron | 35.0% |
| ! | AACCTTTTGATAGACCTTTC+CGG | - | chr4.4:8740720-8740739 | None:intergenic | 35.0% |
| ! | AGCAATATCTAGCTTGAATG+AGG | + | chr4.4:8741601-8741620 | MS.gene28433:CDS | 35.0% |
| ! | ATGAACCTTGTTTGCAGAAT+AGG | + | chr4.4:8741336-8741355 | MS.gene28433:intron | 35.0% |
| ! | CATTTACTCTAAAGAGGTAG+TGG | + | chr4.4:8743438-8743457 | MS.gene28433:intron | 35.0% |
| ! | GGCTTTTTGCAAAAAGATGA+CGG | + | chr4.4:8741210-8741229 | MS.gene28433:intron | 35.0% |
| ! | TAGGCATCGTAGTGATTATT+TGG | + | chr4.4:8744682-8744701 | MS.gene28433:intron | 35.0% |
| ! | TATTTTCCGTGATCTGTGAT+TGG | + | chr4.4:8741299-8741318 | MS.gene28433:intron | 35.0% |
| ! | TCAAGGTTTGCTTATGATGT+TGG | + | chr4.4:8740386-8740405 | MS.gene28433:intron | 35.0% |
| ! | TGACTTGTGATTTCCATGAA+TGG | + | chr4.4:8742785-8742804 | MS.gene28433:intron | 35.0% |
| ! | TGGGTTGAGCTTTATATTTC+AGG | + | chr4.4:8744008-8744027 | MS.gene28433:intron | 35.0% |
| !! | AGAGGTAGTGGATTTGTATT+CGG | + | chr4.4:8743450-8743469 | MS.gene28433:intron | 35.0% |
| !! | CGAGTTTTGTGAATTATCCT+TGG | + | chr4.4:8741085-8741104 | MS.gene28433:intron | 35.0% |
| !!! | TTGGGTGCTATTCTCATTTT+TGG | + | chr4.4:8743960-8743979 | MS.gene28433:intron | 35.0% |
| AAAAACTCGTGCGTGAGATA+AGG | + | chr4.4:8743605-8743624 | MS.gene28433:intron | 40.0% | |
| AAATGTTGGACCGTCAAATG+TGG | + | chr4.4:8740462-8740481 | MS.gene28433:intron | 40.0% | |
| AACACAACATTCATGGACCT+AGG | + | chr4.4:8742328-8742347 | MS.gene28433:intron | 40.0% | |
| AACCCACTCTCAAAAGATAG+GGG | - | chr4.4:8743363-8743382 | None:intergenic | 40.0% | |
| AAGAAAGGCTGAGATAGACT+TGG | + | chr4.4:8744185-8744204 | MS.gene28433:CDS | 40.0% | |
| AAGATAGGGGATGTAAAGAC+AGG | - | chr4.4:8743350-8743369 | None:intergenic | 40.0% | |
| AAGCAATTATGGTGTACGGA+TGG | - | chr4.4:8742606-8742625 | None:intergenic | 40.0% | |
| AAGCATACTAGCAAGGAAAC+TGG | - | chr4.4:8741442-8741461 | None:intergenic | 40.0% | |
| AATGTTGTGTTTCCGAGGAT+TGG | - | chr4.4:8742319-8742338 | None:intergenic | 40.0% | |
| ACACATGAATAGAAGGCAAG+CGG | + | chr4.4:8742254-8742273 | MS.gene28433:intron | 40.0% | |
| ACACTACTGAACTTGGTTCA+TGG | - | chr4.4:8743562-8743581 | None:intergenic | 40.0% | |
| ACAGAAATGGTCATCAGAAG+AGG | + | chr4.4:8740255-8740274 | MS.gene28433:CDS | 40.0% | |
| ACCCAAGCATATTCAGATAG+AGG | + | chr4.4:8744057-8744076 | MS.gene28433:CDS | 40.0% | |
| ACCCCTGTCAGATTTAATAG+AGG | - | chr4.4:8744124-8744143 | None:intergenic | 40.0% | |
| AGAACACGCTTTCTCATGTT+TGG | + | chr4.4:8742465-8742484 | MS.gene28433:intron | 40.0% | |
| AGAACCCACTCTCAAAAGAT+AGG | - | chr4.4:8743365-8743384 | None:intergenic | 40.0% | |
| AGCAATTATGGTGTACGGAT+GGG | - | chr4.4:8742605-8742624 | None:intergenic | 40.0% | |
| ATAAGGGTCATGCTCAGTTA+AGG | - | chr4.4:8740929-8740948 | None:intergenic | 40.0% | |
| ATAGATCGCATTCTACCACA+AGG | - | chr4.4:8742850-8742869 | None:intergenic | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | - | chr4.4:8742348-8742367 | None:intergenic | 40.0% | |
| ATCGACCGTAATATCCCTAT+TGG | + | chr4.4:8741021-8741040 | MS.gene28433:intron | 40.0% | |
| ATTAGGCAAGCATACTAGCA+AGG | - | chr4.4:8741449-8741468 | None:intergenic | 40.0% | |
| CAAAACTCGATTCCACCAAA+CGG | - | chr4.4:8741074-8741093 | None:intergenic | 40.0% | |
| CAATTCTACGACTGCAAACA+AGG | - | chr4.4:8742102-8742121 | None:intergenic | 40.0% | |
| CACTTTACAACCCTATCCTA+TGG | + | chr4.4:8743256-8743275 | MS.gene28433:intron | 40.0% | |
| CAGATTGGACAACCTTATAG+TGG | + | chr4.4:8741577-8741596 | MS.gene28433:intron | 40.0% | |
| CATTTATTACTCCAGTGCAC+AGG | - | chr4.4:8742042-8742061 | None:intergenic | 40.0% | |
| CCATGTTATTATTGGAAGGG+AGG | + | chr4.4:8744091-8744110 | MS.gene28433:CDS | 40.0% | |
| CCCTTTGAACTCTATGTAGA+AGG | + | chr4.4:8742374-8742393 | MS.gene28433:intron | 40.0% | |
| CCTAATTGAAAGACAATCGC+CGG | - | chr4.4:8741385-8741404 | None:intergenic | 40.0% | |
| CCTACATTAACCCATAGGAT+AGG | - | chr4.4:8743270-8743289 | None:intergenic | 40.0% | |
| CCTATGACCTCCATATTACA+AGG | - | chr4.4:8741938-8741957 | None:intergenic | 40.0% | |
| CCTCCCTTCCAATAATAACA+TGG | - | chr4.4:8744094-8744113 | None:intergenic | 40.0% | |
| CCTTGAGATCGATATTTGAG+CGG | - | chr4.4:8740372-8740391 | None:intergenic | 40.0% | |
| CCTTGTAATATGGAGGTCAT+AGG | + | chr4.4:8741935-8741954 | MS.gene28433:intron | 40.0% | |
| CGACCCATGTTATTATTGGA+AGG | + | chr4.4:8744087-8744106 | MS.gene28433:CDS | 40.0% | |
| CGGCGATTGTCTTTCAATTA+GGG | + | chr4.4:8741383-8741402 | MS.gene28433:intron | 40.0% | |
| CTAAGTAGAGCCTTAGAAGT+TGG | + | chr4.4:8743508-8743527 | MS.gene28433:intron | 40.0% | |
| CTATCTGAATATGCTTGGGT+AGG | - | chr4.4:8744057-8744076 | None:intergenic | 40.0% | |
| CTATTAAATCTGACAGGGGT+GGG | + | chr4.4:8744124-8744143 | MS.gene28433:CDS | 40.0% | |
| GAACCAAGTTCAGTAGTGTT+GGG | + | chr4.4:8743563-8743582 | MS.gene28433:intron | 40.0% | |
| GAACCCACTCTCAAAAGATA+GGG | - | chr4.4:8743364-8743383 | None:intergenic | 40.0% | |
| GATCTTCAAAAGATATCCGG+GGG | + | chr4.4:8741127-8741146 | MS.gene28433:intron | 40.0% | |
| GCCTCTATTAAATCTGACAG+GGG | + | chr4.4:8744120-8744139 | MS.gene28433:CDS | 40.0% | |
| GGAAAGGTCTATCAAAAGGT+TGG | + | chr4.4:8740719-8740738 | MS.gene28433:intron | 40.0% | |
| GGTTTATTTGGTCGAAATGC+GGG | + | chr4.4:8741042-8741061 | MS.gene28433:intron | 40.0% | |
| GTGACTACCTTGTAATATGG+AGG | + | chr4.4:8741928-8741947 | MS.gene28433:intron | 40.0% | |
| TAGATCGCATTCTACCACAA+GGG | - | chr4.4:8742849-8742868 | None:intergenic | 40.0% | |
| TATCACCACTTGTGGGATTA+GGG | - | chr4.4:8742546-8742565 | None:intergenic | 40.0% | |
| TATGCTGGAAATTAAGGGTC+CGG | + | chr4.4:8740698-8740717 | MS.gene28433:CDS | 40.0% | |
| TATTAAATCTGACAGGGGTG+GGG | + | chr4.4:8744125-8744144 | MS.gene28433:CDS | 40.0% | |
| TCTATTAAATCTGACAGGGG+TGG | + | chr4.4:8744123-8744142 | MS.gene28433:CDS | 40.0% | |
| TCTCACATTGGCCAGAAATA+AGG | + | chr4.4:8743484-8743503 | MS.gene28433:intron | 40.0% | |
| TGAACCAAGTTCAGTAGTGT+TGG | + | chr4.4:8743562-8743581 | MS.gene28433:intron | 40.0% | |
| TGGATGGAAAAACCAATCCT+CGG | + | chr4.4:8742304-8742323 | MS.gene28433:intron | 40.0% | |
| TTCACTTGTCTTTCAGCACA+TGG | - | chr4.4:8742694-8742713 | None:intergenic | 40.0% | |
| TTGAGCGGATATACAACACA+TGG | - | chr4.4:8740357-8740376 | None:intergenic | 40.0% | |
| TTTGCACAAAGAAGCTTGAG+TGG | + | chr4.4:8742718-8742737 | MS.gene28433:intron | 40.0% | |
| ! | AATAAAAAGGGTGCGTCATC+AGG | + | chr4.4:8740581-8740600 | MS.gene28433:CDS | 40.0% |
| ! | CCTATCCTATGGGTTAATGT+AGG | + | chr4.4:8743267-8743286 | MS.gene28433:intron | 40.0% |
| ! | TCATGTTTGGCCACTTTGTT+TGG | + | chr4.4:8742478-8742497 | MS.gene28433:intron | 40.0% |
| ! | TTTGTTTGGCGCAGCTTTTA+GGG | + | chr4.4:8742492-8742511 | MS.gene28433:intron | 40.0% |
| !! | AAACTAGCTCTGCTTCATGA+TGG | - | chr4.4:8742648-8742667 | None:intergenic | 40.0% |
| !! | ATCCCCTATCTTTTGAGAGT+GGG | + | chr4.4:8743358-8743377 | MS.gene28433:intron | 40.0% |
| !! | CAACTTCTAAGGCTCTACTT+AGG | - | chr4.4:8743510-8743529 | None:intergenic | 40.0% |
| !! | CGGAAAGTGTCAAAAGCAAA+TGG | + | chr4.4:8742421-8742440 | MS.gene28433:intron | 40.0% |
| !! | CTCTACTTAGGCCTTATTTC+TGG | - | chr4.4:8743498-8743517 | None:intergenic | 40.0% |
| !!! | TGATCGGTTTTGAGAAGAGA+CGG | - | chr4.4:8744603-8744622 | None:intergenic | 40.0% |
| AAAAGCTGCGCCAAACAAAG+TGG | - | chr4.4:8742491-8742510 | None:intergenic | 45.0% | |
| AAAGCTGGAGTTGTGAAGCA+TGG | + | chr4.4:8740289-8740308 | MS.gene28433:CDS | 45.0% | |
| AAGACGAGACTTTACCACAG+TGG | + | chr4.4:8741184-8741203 | MS.gene28433:intron | 45.0% | |
| AAGGCAAATGGATCATCCTC+CGG | + | chr4.4:8740540-8740559 | MS.gene28433:CDS | 45.0% | |
| ACACCCAACACTACTGAACT+TGG | - | chr4.4:8743569-8743588 | None:intergenic | 45.0% | |
| AGAAGCTGAAGAGGCAACAA+AGG | + | chr4.4:8744293-8744312 | MS.gene28433:intron | 45.0% | |
| AGATCGCATTCTACCACAAG+GGG | - | chr4.4:8742848-8742867 | None:intergenic | 45.0% | |
| AGGAGGAAAACATGCATGTG+TGG | - | chr4.4:8742581-8742600 | None:intergenic | 45.0% | |
| AGGTCAACCTCTGCTACAAA+TGG | - | chr4.4:8743330-8743349 | None:intergenic | 45.0% | |
| ATCACCACTTGTGGGATTAG+GGG | - | chr4.4:8742545-8742564 | None:intergenic | 45.0% | |
| ATGCATGTGTGGACTTGACT+GGG | - | chr4.4:8742570-8742589 | None:intergenic | 45.0% | |
| ATGGTCATCAGAAGAGGAAG+CGG | + | chr4.4:8740261-8740280 | MS.gene28433:CDS | 45.0% | |
| ATTAAATCTGACAGGGGTGG+GGG | + | chr4.4:8744126-8744145 | MS.gene28433:CDS | 45.0% | |
| ATTATGGTGTACGGATGGGT+AGG | - | chr4.4:8742601-8742620 | None:intergenic | 45.0% | |
| CAATGTTTGGTTATGTGGGC+TGG | + | chr4.4:8740489-8740508 | MS.gene28433:intron | 45.0% | |
| CACATGAATAGAAGGCAAGC+GGG | + | chr4.4:8742255-8742274 | MS.gene28433:intron | 45.0% | |
| CCATGAATGTTGTGTTTCCG+AGG | - | chr4.4:8742324-8742343 | None:intergenic | 45.0% | |
| CCGCTCAAATATCGATCTCA+AGG | + | chr4.4:8740369-8740388 | MS.gene28433:CDS | 45.0% | |
| CCGGCGATTGTCTTTCAATT+AGG | + | chr4.4:8741382-8741401 | MS.gene28433:intron | 45.0% | |
| CCTCGGAAACACAACATTCA+TGG | + | chr4.4:8742321-8742340 | MS.gene28433:intron | 45.0% | |
| CTGGATGATCTTAACACGCT+TGG | - | chr4.4:8741423-8741442 | None:intergenic | 45.0% | |
| GATATCCCCATTTGTAGCAG+AGG | + | chr4.4:8743320-8743339 | MS.gene28433:intron | 45.0% | |
| GGCTGAGATAGACTTGGAAT+TGG | + | chr4.4:8744191-8744210 | MS.gene28433:CDS | 45.0% | |
| GGTCAACCTCTGCTACAAAT+GGG | - | chr4.4:8743329-8743348 | None:intergenic | 45.0% | |
| GTATCACCACTTGTGGGATT+AGG | - | chr4.4:8742547-8742566 | None:intergenic | 45.0% | |
| GTCAACCTCTGCTACAAATG+GGG | - | chr4.4:8743328-8743347 | None:intergenic | 45.0% | |
| GTCCGGAAAGGTCTATCAAA+AGG | + | chr4.4:8740715-8740734 | MS.gene28433:CDS | 45.0% | |
| GTGTTGCCAATCACAGATCA+CGG | - | chr4.4:8741308-8741327 | None:intergenic | 45.0% | |
| TAAGCTGTCAGCAAAACTGG+TGG | + | chr4.4:8743074-8743093 | MS.gene28433:CDS | 45.0% | |
| TAGAGCCTTAGAAGTTGGCT+TGG | + | chr4.4:8743513-8743532 | MS.gene28433:intron | 45.0% | |
| TGAAGCATGGCGTAGGTAAA+TGG | + | chr4.4:8740302-8740321 | MS.gene28433:CDS | 45.0% | |
| TGATCCCTGCTCTTGATTGA+AGG | + | chr4.4:8744739-8744758 | MS.gene28433:CDS | 45.0% | |
| TGGAAATTAAGGGTCCGGAA+AGG | + | chr4.4:8740703-8740722 | MS.gene28433:CDS | 45.0% | |
| TGTAGAAGGTTAACACCCTC+TGG | + | chr4.4:8742388-8742407 | MS.gene28433:intron | 45.0% | |
| TTCTGGCCAATGTGAGACTT+TGG | - | chr4.4:8743481-8743500 | None:intergenic | 45.0% | |
| ! | CTGGTGGATCTTGTATCTAG+TGG | + | chr4.4:8743090-8743109 | MS.gene28433:CDS | 45.0% |
| ! | GTTGTAAAGTGCACCGATAC+TGG | - | chr4.4:8743247-8743266 | None:intergenic | 45.0% |
| ! | GTTTTGCTAGCATCGTGTAG+AGG | + | chr4.4:8741480-8741499 | MS.gene28433:intron | 45.0% |
| ! | TCTAGCTTGAATGAGGTCGA+TGG | + | chr4.4:8741608-8741627 | MS.gene28433:CDS | 45.0% |
| !! | CATCCCCTATCTTTTGAGAG+TGG | + | chr4.4:8743357-8743376 | MS.gene28433:intron | 45.0% |
| !! | CTTTGTTTGGCGCAGCTTTT+AGG | + | chr4.4:8742491-8742510 | MS.gene28433:intron | 45.0% |
| !! | TGGGTGCTACTAGACAGAAA+TGG | + | chr4.4:8740242-8740261 | MS.gene28433:CDS | 45.0% |
| !! | TGTGGGCTGGATAGGATAAA+TGG | + | chr4.4:8740502-8740521 | MS.gene28433:intron | 45.0% |
| !! | TTCAAAAGGCTTCGAGTTGC+AGG | - | chr4.4:8742753-8742772 | None:intergenic | 45.0% |
| !! | TTTGGTTATGTGGGCTGGAT+AGG | + | chr4.4:8740494-8740513 | MS.gene28433:intron | 45.0% |
| !!! | ACTCGAAGCCTTTTGAAACC+TGG | + | chr4.4:8742756-8742775 | MS.gene28433:intron | 45.0% |
| !!! | GATCGGTTTTGAGAAGAGAC+GGG | - | chr4.4:8744602-8744621 | None:intergenic | 45.0% |
| AAATGCGGGAAAGCTCCGTT+TGG | + | chr4.4:8741056-8741075 | MS.gene28433:intron | 50.0% | |
| AGAAGCAGAAGCTGATGCAG+CGG | + | chr4.4:8744329-8744348 | MS.gene28433:intron | 50.0% | |
| AGCTGAAGAGGCAACAAAGG+AGG | + | chr4.4:8744296-8744315 | MS.gene28433:intron | 50.0% | |
| AGGCAAATGGATCATCCTCC+GGG | + | chr4.4:8740541-8740560 | MS.gene28433:CDS | 50.0% | |
| CACTAGTCACAATGAACCCC+CGG | - | chr4.4:8741146-8741165 | None:intergenic | 50.0% | |
| CATGCATGTGTGGACTTGAC+TGG | - | chr4.4:8742571-8742590 | None:intergenic | 50.0% | |
| CGAACCTTGGCACATTGGTA+AGG | + | chr4.4:8741906-8741925 | MS.gene28433:intron | 50.0% | |
| CTCCACCAAGCCAACTTCTA+AGG | - | chr4.4:8743521-8743540 | None:intergenic | 50.0% | |
| CTTCATCTGCAAGCGAACCT+TGG | + | chr4.4:8741893-8741912 | MS.gene28433:intron | 50.0% | |
| GAGACTTTACCACAGTGGAG+CGG | + | chr4.4:8741189-8741208 | MS.gene28433:intron | 50.0% | |
| GTAGAACCAATACTGCGCAC+CGG | + | chr4.4:8743038-8743057 | MS.gene28433:intron | 50.0% | |
| GTCACCTTACCAATGTGCCA+AGG | - | chr4.4:8741913-8741932 | None:intergenic | 50.0% | |
| TGCATGTGTGGACTTGACTG+GGG | - | chr4.4:8742569-8742588 | None:intergenic | 50.0% | |
| ! | ACAGCTGCTGGTTGTGAGTT+TGG | + | chr4.4:8743783-8743802 | MS.gene28433:intron | 50.0% |
| ! | ACTGGGGTATCACCACTTGT+GGG | - | chr4.4:8742553-8742572 | None:intergenic | 50.0% |
| ! | AGTGCACCGATACTGGTGAT+TGG | - | chr4.4:8743240-8743259 | None:intergenic | 50.0% |
| ! | ATTAGGGGTCGGGGCTTTTA+TGG | - | chr4.4:8742530-8742549 | None:intergenic | 50.0% |
| ! | CAGCTGCTGGTTGTGAGTTT+GGG | + | chr4.4:8743784-8743803 | MS.gene28433:intron | 50.0% |
| ! | CGCTGCTAAGCCTTTTTGGA+TGG | + | chr4.4:8742288-8742307 | MS.gene28433:intron | 50.0% |
| ! | GGGGCATTTGAAGCACCAAA+GGG | - | chr4.4:8742829-8742848 | None:intergenic | 50.0% |
| ! | TGCTGCTTAGATACAGCTGC+TGG | + | chr4.4:8743771-8743790 | MS.gene28433:intron | 50.0% |
| !! | AGCCTTAGAAGTTGGCTTGG+TGG | + | chr4.4:8743516-8743535 | MS.gene28433:intron | 50.0% |
| !! | AGGGGCATTTGAAGCACCAA+AGG | - | chr4.4:8742830-8742849 | None:intergenic | 50.0% |
| AATCTGCCGGTGCGCAGTAT+TGG | - | chr4.4:8743047-8743066 | None:intergenic | 55.0% | |
| ACTCCCTAGAACCCACCTAG+TGG | + | chr4.4:8742013-8742032 | MS.gene28433:intron | 55.0% | |
| ACTTGTGGGATTAGGGGTCG+GGG | - | chr4.4:8742539-8742558 | None:intergenic | 55.0% | |
| AGAGGCAACAAAGGAGGCAG+AGG | + | chr4.4:8744302-8744321 | MS.gene28433:intron | 55.0% | |
| ATGGTGTACGGATGGGTAGG+AGG | - | chr4.4:8742598-8742617 | None:intergenic | 55.0% | |
| CACTTGTGGGATTAGGGGTC+GGG | - | chr4.4:8742540-8742559 | None:intergenic | 55.0% | |
| CCACTTGTGGGATTAGGGGT+CGG | - | chr4.4:8742541-8742560 | None:intergenic | 55.0% | |
| CTCCCTAGAACCCACCTAGT+GGG | + | chr4.4:8742014-8742033 | MS.gene28433:intron | 55.0% | |
| CTCTTCAGCTTCTGCCATGG+CGG | - | chr4.4:8744286-8744305 | None:intergenic | 55.0% | |
| GCAAGCGAACCTTGGCACAT+TGG | + | chr4.4:8741901-8741920 | MS.gene28433:intron | 55.0% | |
| GGAGTTGTGAAGCATGGCGT+AGG | + | chr4.4:8740295-8740314 | MS.gene28433:CDS | 55.0% | |
| GGCAAATGGATCATCCTCCG+GGG | + | chr4.4:8740542-8740561 | MS.gene28433:CDS | 55.0% | |
| GGTGCTTCAAATGCCCCTTG+TGG | + | chr4.4:8742832-8742851 | MS.gene28433:intron | 55.0% | |
| GGTTAACACCCTCTGGTGCT+AGG | + | chr4.4:8742395-8742414 | MS.gene28433:intron | 55.0% | |
| TGCAAAAAGCCGCTCCACTG+TGG | - | chr4.4:8741201-8741220 | None:intergenic | 55.0% | |
| TGCCTCTTCAGCTTCTGCCA+TGG | - | chr4.4:8744289-8744308 | None:intergenic | 55.0% | |
| TGCTAGCTGAGAGTTGTCCC+CGG | - | chr4.4:8740562-8740581 | None:intergenic | 55.0% | |
| TTCCGCTTCCTAGCACCAGA+GGG | - | chr4.4:8742406-8742425 | None:intergenic | 55.0% | |
| TTTCCGCTTCCTAGCACCAG+AGG | - | chr4.4:8742407-8742426 | None:intergenic | 55.0% | |
| ! | CTCCCACTAGGTGGGTTCTA+GGG | - | chr4.4:8742019-8742038 | None:intergenic | 55.0% |
| ! | GACTGGGGTATCACCACTTG+TGG | - | chr4.4:8742554-8742573 | None:intergenic | 55.0% |
| ! | GCTGCGCTGCTAAGCCTTTT+TGG | + | chr4.4:8742284-8742303 | MS.gene28433:intron | 55.0% |
| ACGGAGTCGTCACGCTGTTC+TGG | - | chr4.4:8740609-8740628 | None:intergenic | 60.0% | |
| AGAACAGCGTGACGACTCCG+TGG | + | chr4.4:8740608-8740627 | MS.gene28433:CDS | 60.0% | |
| AGCAGCCTTACACCCGCAAG+CGG | - | chr4.4:8741984-8742003 | None:intergenic | 60.0% | |
| CAAGCGGAGAGGCTGTTGCA+AGG | - | chr4.4:8741968-8741987 | None:intergenic | 60.0% | |
| CCGACCCCTAATCCCACAAG+TGG | + | chr4.4:8742538-8742557 | MS.gene28433:intron | 60.0% | |
| CGCCATGGCAGAAGCTGAAG+AGG | + | chr4.4:8744284-8744303 | MS.gene28433:intron | 60.0% | |
| GAGGAAGCGGCTCTCAAAGC+TGG | + | chr4.4:8740274-8740293 | MS.gene28433:CDS | 60.0% | |
| TAGCTGAGAGTTGTCCCCGG+AGG | - | chr4.4:8740559-8740578 | None:intergenic | 60.0% | |
| TGCAACAGCCTCTCCGCTTG+CGG | + | chr4.4:8741968-8741987 | MS.gene28433:intron | 60.0% | |
| TGCACAGGCTCCCACTAGGT+GGG | - | chr4.4:8742027-8742046 | None:intergenic | 60.0% | |
| TGCGGGAAAGCTCCGTTTGG+TGG | + | chr4.4:8741059-8741078 | MS.gene28433:intron | 60.0% | |
| TGCTGAAGCAGAAGCCGCCA+TGG | + | chr4.4:8744269-8744288 | MS.gene28433:intron | 60.0% | |
| ! | CACCCTCTGGTGCTAGGAAG+CGG | + | chr4.4:8742401-8742420 | MS.gene28433:intron | 60.0% |
| ! | GCTCCCACTAGGTGGGTTCT+AGG | - | chr4.4:8742020-8742039 | None:intergenic | 60.0% |
| ! | GGCTTTGTGCCCTCACAAGC+AGG | - | chr4.4:8744581-8744600 | None:intergenic | 60.0% |
| ! | GGGGTCGGGGCTTTTATGGT+AGG | - | chr4.4:8742526-8742545 | None:intergenic | 60.0% |
| CCAGTGCACAGGCTCCCACT+AGG | - | chr4.4:8742031-8742050 | None:intergenic | 65.0% | |
| CCTAGTGGGAGCCTGTGCAC+TGG | + | chr4.4:8742028-8742047 | MS.gene28433:intron | 65.0% | |
| CCTCTCCGCTTGCGGGTGTA+AGG | + | chr4.4:8741976-8741995 | MS.gene28433:intron | 65.0% | |
| CCTTACACCCGCAAGCGGAG+AGG | - | chr4.4:8741979-8741998 | None:intergenic | 65.0% | |
| GCAACAGCCTCTCCGCTTGC+GGG | + | chr4.4:8741969-8741988 | MS.gene28433:intron | 65.0% | |
| GTGCACAGGCTCCCACTAGG+TGG | - | chr4.4:8742028-8742047 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8740241 | 8744758 | 8740241 | ID=MS.gene28433 |
| chr4.4 | mRNA | 8740241 | 8744758 | 8740241 | ID=MS.gene28433.t1;Parent=MS.gene28433 |
| chr4.4 | exon | 8740241 | 8740390 | 8740241 | ID=MS.gene28433.t1.exon1;Parent=MS.gene28433.t1 |
| chr4.4 | CDS | 8740241 | 8740390 | 8740241 | ID=cds.MS.gene28433.t1;Parent=MS.gene28433.t1 |
| chr4.4 | exon | 8740516 | 8740736 | 8740516 | ID=MS.gene28433.t1.exon2;Parent=MS.gene28433.t1 |
| chr4.4 | CDS | 8740516 | 8740736 | 8740516 | ID=cds.MS.gene28433.t1;Parent=MS.gene28433.t1 |
| chr4.4 | exon | 8741580 | 8741664 | 8741580 | ID=MS.gene28433.t1.exon3;Parent=MS.gene28433.t1 |
| chr4.4 | CDS | 8741580 | 8741664 | 8741580 | ID=cds.MS.gene28433.t1;Parent=MS.gene28433.t1 |
| chr4.4 | exon | 8743042 | 8743125 | 8743042 | ID=MS.gene28433.t1.exon4;Parent=MS.gene28433.t1 |
| chr4.4 | CDS | 8743042 | 8743125 | 8743042 | ID=cds.MS.gene28433.t1;Parent=MS.gene28433.t1 |
| chr4.4 | exon | 8744030 | 8744242 | 8744030 | ID=MS.gene28433.t1.exon5;Parent=MS.gene28433.t1 |
| chr4.4 | CDS | 8744030 | 8744242 | 8744030 | ID=cds.MS.gene28433.t1;Parent=MS.gene28433.t1 |
| chr4.4 | exon | 8744738 | 8744758 | 8744738 | ID=MS.gene28433.t1.exon6;Parent=MS.gene28433.t1 |
| chr4.4 | CDS | 8744738 | 8744758 | 8744738 | ID=cds.MS.gene28433.t1;Parent=MS.gene28433.t1 |
| Gene Sequence |
| Protein sequence |
