AlfalfaGEDB | MS.gene28503

M. sativa cultivar XinJiangDaYe / MS.gene28503

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF01476.23 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28503.t1	XP_003629508.1	92.1	597	40	2	1	597	1	590	0.00E+00	1083.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28503.t1	Q0GXS4	53.0	607	263	8	1	597	1	595	2.6e-165	583.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28503.t1	G7LFJ7	92.1	597	40	2	1	597	1	590	0.0e+00	1083.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28503.t1	MTR_8g078300	92.127	597	40	2	1	597	1	590	0.0	1108
MS.gene28503.t1	MTR_5g019040	56.272	574	229	8	33	597	35	595	0.0	627
MS.gene28503.t1	MTR_5g042440	35.798	595	310	15	29	565	30	610	6.54e-92	296
MS.gene28503.t1	MTR_8g078360	61.244	209	26	2	27	235	13	166	1.74e-75	238
MS.gene28503.t1	MTR_5g085790	29.905	632	343	20	40	594	48	656	2.21e-68	234
MS.gene28503.t1	MTR_5g019050	30.034	586	327	16	44	565	60	626	3.67e-67	230
MS.gene28503.t1	MTR_1g021845	30.175	570	333	16	44	564	57	610	1.55e-62	218
MS.gene28503.t1	MTR_3g080170	28.571	602	344	18	40	571	50	635	6.77e-59	208
MS.gene28503.t1	MTR_7g029650	27.343	651	373	20	12	572	5	645	2.12e-57	204
MS.gene28503.t1	MTR_7g079350	27.027	592	363	19	40	574	63	642	8.78e-54	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28503.t1	AT3G21630	30.869	541	304	20	79	567	71	593	1.95e-61	214
MS.gene28503.t1	AT2G23770	28.934	591	333	15	44	579	54	612	2.52e-61	214
MS.gene28503.t1	AT3G01840	26.306	555	306	20	90	567	90	618	2.01e-43	165
MS.gene28503.t1	AT2G33580	34.932	292	156	7	311	571	359	647	3.19e-43	164
MS.gene28503.t1	AT4G02010	28.767	365	215	8	246	569	300	660	6.65e-37	147
MS.gene28503.t1	AT1G68690	28.906	384	198	11	254	568	276	653	4.22e-34	138
MS.gene28503.t1	AT1G68690	28.906	384	198	11	254	568	276	653	4.22e-34	138
MS.gene28503.t1	AT1G68690	28.906	384	198	11	254	568	276	653	4.22e-34	138
MS.gene28503.t1	AT1G79620	28.134	359	203	10	256	570	567	914	2.52e-33	136
MS.gene28503.t1	AT1G68690	29.255	376	191	11	254	560	276	645	2.61e-33	135

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Find 102 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGATCTCTTTATAAC+TGG	0.329071	8.4:+28297826	MS.gene28503:CDS
AAATTAATAGGTGTATCTTT+AGG	0.343388	8.4:+28297765	MS.gene28503:CDS
AACAAATATGGATTTAGATT+TGG	0.215509	8.4:-28297084	None:intergenic
AAGCCAAAAGTGTATGAAGT+TGG	0.539311	8.4:+28297573	MS.gene28503:CDS
AAGTTTGTTCCATTGGTTTG+TGG	0.511791	8.4:-28296733	None:intergenic
AATCCATATTTGTTGAAAAT+AGG	0.254005	8.4:+28297093	MS.gene28503:CDS
AATTTCACTAATATTATTTC+TGG	0.169016	8.4:+28297446	MS.gene28503:CDS
ACAAATATGGATTTAGATTT+GGG	0.267934	8.4:-28297083	None:intergenic
ACAAGGGTGAGATTATCATT+AGG	0.519884	8.4:-28297207	None:intergenic
ACAGCAAATACAAACAACTT+TGG	0.509148	8.4:+28297267	MS.gene28503:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAGCAAATACAAACAACTT+TGG	+	chr8.4:28297267-28297286	MS.gene28503:CDS	30.0%
AGCTCTTAGTTTATTCACTT+TGG	+	chr8.4:28298256-28298275	MS.gene28503:CDS	30.0%
AGTATCTCATTACCTATGTT+TGG	+	chr8.4:28297181-28297200	MS.gene28503:CDS	30.0%
ATATATTAGATATGGCTGTG+AGG	-	chr8.4:28296834-28296853	None:intergenic	30.0%
CGTATCAAAATCTCACTAAT+TGG	+	chr8.4:28297040-28297059	MS.gene28503:CDS	30.0%
GCATGAAATATAGTTTGAGA+TGG	-	chr8.4:28296673-28296692	None:intergenic	30.0%
TATATTAGATATGGCTGTGA+GGG	-	chr8.4:28296833-28296852	None:intergenic	30.0%
TTATAAAACCTCCCTAACTT+AGG	-	chr8.4:28298227-28298246	None:intergenic	30.0%
TTGCTTATACCTATAACTTG+TGG	+	chr8.4:28296931-28296950	MS.gene28503:CDS	30.0%
TTGGCTGTGAAAAATGTAAA+GGG	+	chr8.4:28297681-28297700	MS.gene28503:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	28296652	28298445	28296652	ID=MS.gene28503
chr8.4	mRNA	28296652	28298445	28296652	ID=MS.gene28503.t1;Parent=MS.gene28503
chr8.4	exon	28296652	28298445	28296652	ID=MS.gene28503.t1.exon1;Parent=MS.gene28503.t1
chr8.4	CDS	28296652	28298445	28296652	ID=cds.MS.gene28503.t1;Parent=MS.gene28503.t1

Gene Sequence

>MS.gene28503

ATGGTTTCTTCCTTTCTACCATCTCAAACTATATTTCATGCACTCATATTCTTTTCTGCCATCCATATCCTACTTCAATTGCCACAAACCAATGGAACAAACTTCTCATGCCCTTTGAATTCCCCTCCTTCATGTGACACATATGTTTCATACTTTGCTAACTCTCCAAACTTTTTAACCCTCACAGCCATATCTAATATATTTGACACCAGTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAATCTCATTCAAGGCCAACTTTTGCTTATACCTATAACTTGTGGTTGCAGTGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTGATCAAAGATGGTGAAAGTTACTACTATCTTTCGACCGTTTCGTATCAAAATCTCACTAATTGGCAGACAGTGGAAGATTCAAACCCAAATCTAAATCCATATTTGTTGAAAATAGGCACCAAAATATCCATCCCTTTGTTCTGTAGTTGCCCTAATTCAAACTATTTTGCAAAAGGGATAGAGTATCTCATTACCTATGTTTGGCAGCCTAATGATAATCTCACCCTTGTAGCTTCCAAGTTTGGTACATCACCAATGGACATAATCACAGCAAATACAAACAACTTTGGTCAAAACTTCACTGCTGCAACCAACCTTCCAATCTTTATCCCAGTGAAAAACTTACCAGCTCTTTCTCAATCATACTATTCTTCAAGTGAAAGAAAGAGAAGCAATCATTTTTCTATTATTATTTCCGTTGGTATAAGTCTAGGATGCACTATTCTAATTTCACTAATATTATTTCTGGTTTATGTTTATTGTTTAAGGAAGAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAACAGATAAGTTAATTTCCGAAGTTTCAAACTATGTAAGTAAGCCAAAAGTGTATGAAGTTGGTATGATCATGAAAGCTACAATGAACCTTAATGAAATATGTAAGATAGGGAAATCAGTGTACAAAGCTAAAATAGATGATTTGGTTTTGGCTGTGAAAAATGTAAAGGGACATATCACAGTCACAGAAGAGTTGATGATTTTACAAAAGGTAAATCATGCAAATCTAGTGAAATTAATAGGTGTATCTTTAGGATATGATGGAAATCACTTTCTTGTATATGAATATGCTGAAAATGGATCTCTTTATAACTGGTTGTTATCTGAGTTTTCCACTCTTAGTTGGAGTCAGAGGTTAAGTATAGCAGTTGATATTGCAATAGGGCTGCAATACTTGCATGAACACACACAACCATGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAAATTTAAGGCCAAGATAGCAAATTTTTCTGTTGCAAGAACTACAAAGAATCCTATGATAACAAAAGTTGATGTTTTAGGTTATGGGATGGTTCTGATGGAGTTAATAACAGGAAAGAAGTTTATGTCGTATAGCGAACATAGCGAGGTGAACATGTTGTTGAAAGATTTTAAGTGTGTGTTTGATATAGAAGAAAAGAGAGAAGAAAGTGTTAGAAGATGGATGGATCCTAAGTTAGGGAGGTTTTATAATGTTGTTGAAGCTCTTAGTTTATTCACTTTGGCAGTGAATTGCATAGAAGAACAACCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGTCTTTCTCTTCTCACTCAACACTCTCCTACTTTGTTAGAGAGGTCTTGGACTTATGGATTAGATGTAGAGGTTGCTGAAATGGTTACTCCCATCATAGCTCGTTGA

Protein sequence

>MS.gene28503.t1

MVSSFLPSQTIFHALIFFSAIHILLQLPQTNGTNFSCPLNSPPSCDTYVSYFANSPNFLTLTAISNIFDTSPQSIARASNIKDENMNLIQGQLLLIPITCGCSGNGNYSFANISHLIKDGESYYYLSTVSYQNLTNWQTVEDSNPNLNPYLLKIGTKISIPLFCSCPNSNYFAKGIEYLITYVWQPNDNLTLVASKFGTSPMDIITANTNNFGQNFTAATNLPIFIPVKNLPALSQSYYSSSERKRSNHFSIIISVGISLGCTILISLILFLVYVYCLRKRKACENKCVPSVEITDKLISEVSNYVSKPKVYEVGMIMKATMNLNEICKIGKSVYKAKIDDLVLAVKNVKGHITVTEELMILQKVNHANLVKLIGVSLGYDGNHFLVYEYAENGSLYNWLLSEFSTLSWSQRLSIAVDIAIGLQYLHEHTQPCIVHRNIKSSNILLDSKFKAKIANFSVARTTKNPMITKVDVLGYGMVLMELITGKKFMSYSEHSEVNMLLKDFKCVFDIEEKREESVRRWMDPKLGRFYNVVEALSLFTLAVNCIEEQPLLRPTMGEVVLSLSLLTQHSPTLLERSWTYGLDVEVAEMVTPIIAR