AlfalfaGEDB | MS.gene28512

M. sativa cultivar XinJiangDaYe / MS.gene28512

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008270 GO:0008276 GO:0008757 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0046914 GO:0071704 GO:0071840 GO:0110165 GO:0140096 GO:1901564
PFAM: PF00856.31 PF05033.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28512.t1	XP_013446422.1	93.3	534	26	2	1	525	1	533	3.30E-293	1016.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28512.t1	O64827	50.6	328	133	8	220	525	1057	1377	3.2e-79	297.4
MS.gene28512.t1	O64827	38.7	124	68	2	77	192	420	543	1.3e-16	89.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28512.t1	A0A072TSH8	93.3	534	26	2	1	525	1	533	2.4e-293	1016.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene28512.t1	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28512.t1	MTR_8g078505	93.258	534	26	2	1	525	1	533	0.0	1019
MS.gene28512.t1	MTR_8g078490	67.550	302	83	3	239	525	947	1248	1.49e-130	410
MS.gene28512.t1	MTR_8g078490	50.000	216	79	5	51	240	374	586	8.46e-50	184
MS.gene28512.t1	MTR_5g018850	61.129	319	102	5	225	525	1188	1502	7.95e-117	377
MS.gene28512.t1	MTR_5g018850	43.448	145	75	1	64	201	492	636	1.92e-29	124
MS.gene28512.t1	MTR_4g132610	64.375	320	95	6	223	525	725	1042	6.29e-116	367
MS.gene28512.t1	MTR_4g132610	44.000	250	105	3	13	240	309	545	7.61e-45	170
MS.gene28512.t1	MTR_8g078700	58.468	248	59	4	6	240	20	236	2.07e-78	254
MS.gene28512.t1	MTR_4g132670	47.239	163	74	2	47	208	167	318	6.84e-34	132
MS.gene28512.t1	MTR_4g132670	51.685	89	39	1	54	138	24	112	6.26e-19	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28512.t1	AT2G23740	54.392	296	110	6	248	525	1082	1370	1.88e-86	291
MS.gene28512.t1	AT2G23740	35.294	136	80	2	65	192	401	536	7.03e-18	88.2
MS.gene28512.t1	AT2G23740	54.392	296	110	6	248	525	1089	1377	2.40e-86	291
MS.gene28512.t1	AT2G23740	35.294	136	80	2	65	192	408	543	6.62e-18	88.2
MS.gene28512.t1	AT2G23740	54.392	296	110	6	248	525	1089	1377	2.40e-86	291
MS.gene28512.t1	AT2G23740	35.294	136	80	2	65	192	408	543	6.62e-18	88.2
MS.gene28512.t1	AT2G23740	54.392	296	110	6	248	525	1089	1377	2.40e-86	291
MS.gene28512.t1	AT2G23740	35.294	136	80	2	65	192	408	543	6.62e-18	88.2
MS.gene28512.t1	AT2G23740	58.547	234	84	4	248	475	1089	1315	3.90e-75	259
MS.gene28512.t1	AT2G23740	35.294	136	80	2	65	192	408	543	7.24e-18	87.8

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Find 104 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGGGTCGTCGCGAA+AGG	0.515962	8.3:+25665944	MS.gene28512:CDS
AAAGCTGAAGAAAATTGCGG+TGG	0.708696	8.3:+25665732	MS.gene28512:CDS
AAAGTAAGCACTCCCATTTG+TGG	0.515955	8.3:+25665582	MS.gene28512:CDS
AAATGGTCGAATCATATTGG+AGG	0.599006	8.3:+25666576	MS.gene28512:CDS
AAGAATCGGCTTTGTCACAT+AGG	0.562883	8.3:-25666102	None:intergenic
ACACCAAGTCCATGCAAATC+AGG	0.422391	8.3:-25665764	None:intergenic
ACATAGGTAAACATCTCCCA+AGG	0.667902	8.3:-25666086	None:intergenic
ACATCATTGATGACCGACAC+TGG	0.541784	8.3:-25665819	None:intergenic
ACATTGGCACAAAGCCGAGA+CGG	0.573840	8.3:+25665671	MS.gene28512:CDS
ACCAGTTGTACCTCCACAAA+TGG	0.405601	8.3:-25665595	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCTGTAATCACAAGATT+GGG	-	chr8.3:25667743-25667762	None:intergenic	30.0%
AGTAGAATCAATGACATATC+GGG	-	chr8.3:25667324-25667343	None:intergenic	30.0%
AGTCTGATATAGAAAACCAA+AGG	+	chr8.3:25665334-25665353	MS.gene28512:CDS	30.0%
ATAGCAGGTTAAATATTGTC+GGG	-	chr8.3:25666417-25666436	None:intergenic	30.0%
CTCTTACAAAAAGAAAATCC+AGG	-	chr8.3:25665651-25665670	None:intergenic	30.0%
GATGAAGAAAAGGACATATT+TGG	+	chr8.3:25666520-25666539	MS.gene28512:CDS	30.0%
GATTACAGAGTTATTGTAGA+GGG	+	chr8.3:25667751-25667770	MS.gene28512:intron	30.0%
GATTGTAAGCATACACATAT+CGG	+	chr8.3:25667778-25667797	MS.gene28512:CDS	30.0%
GTATATATTGCTACCAATTG+TGG	-	chr8.3:25665523-25665542	None:intergenic	30.0%
GTCTGATATAGAAAACCAAA+GGG	+	chr8.3:25665335-25665354	MS.gene28512:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	25665231	25668050	25665231	ID=MS.gene28512
chr8.3	mRNA	25665231	25668050	25665231	ID=MS.gene28512.t1;Parent=MS.gene28512
chr8.3	exon	25665231	25666151	25665231	ID=MS.gene28512.t1.exon1;Parent=MS.gene28512.t1
chr8.3	CDS	25665231	25666151	25665231	ID=cds.MS.gene28512.t1;Parent=MS.gene28512.t1
chr8.3	exon	25666448	25666597	25666448	ID=MS.gene28512.t1.exon2;Parent=MS.gene28512.t1
chr8.3	CDS	25666448	25666597	25666448	ID=cds.MS.gene28512.t1;Parent=MS.gene28512.t1
chr8.3	exon	25666853	25666969	25666853	ID=MS.gene28512.t1.exon3;Parent=MS.gene28512.t1
chr8.3	CDS	25666853	25666969	25666853	ID=cds.MS.gene28512.t1;Parent=MS.gene28512.t1
chr8.3	exon	25667051	25667154	25667051	ID=MS.gene28512.t1.exon4;Parent=MS.gene28512.t1
chr8.3	CDS	25667051	25667154	25667051	ID=cds.MS.gene28512.t1;Parent=MS.gene28512.t1
chr8.3	exon	25667247	25667378	25667247	ID=MS.gene28512.t1.exon5;Parent=MS.gene28512.t1
chr8.3	CDS	25667247	25667378	25667247	ID=cds.MS.gene28512.t1;Parent=MS.gene28512.t1
chr8.3	exon	25667759	25667819	25667759	ID=MS.gene28512.t1.exon6;Parent=MS.gene28512.t1
chr8.3	CDS	25667759	25667819	25667759	ID=cds.MS.gene28512.t1;Parent=MS.gene28512.t1
chr8.3	exon	25667958	25668050	25667958	ID=MS.gene28512.t1.exon7;Parent=MS.gene28512.t1
chr8.3	CDS	25667958	25668050	25667958	ID=cds.MS.gene28512.t1;Parent=MS.gene28512.t1

Gene Sequence

>MS.gene28512

ATGGCAATGCTTCATAATGAAGAACATATTTGCGTTGTAAATCGCGAATATGATATATCGAAAATGGATGATGAACTCAGCGACAGTTCAGTTGTAATGAAAGAGTCTGATATAGAAAACCAAAGGGATTCACTTAGCTTGCAAGAATCTACAGAAATGATCTCGTATAGCAGTGGAACAGTATCAAGGCCTGTGGATGAAATGGCTATTCAAATATTTGTAGAACCTGGTACCAAGGATCGACAATGTCGAGCATATGTCAAAGACAAGGGAAGGCAGTGTGTGAGAACCACAATTGGTAGCAATATATACTGTTGTGCTCATTTCTCAAACAAAAGAGAAAGACGTCTTAAAGTAAGCACTCCCATTTGTGGAGGTACAACTGGTTCTGGTAATAGCTGTAAGTATCGTTCCCGTCCTGGATTTTCTTTTTGTAAGAGACATTGGCACAAAGCCGAGACGGGCCAGACCTCAAATTCAAACCGTCGTACATTAAAGAGGAAAGCTGAAGAAAATTGCGGTGGTTCCCAGAACCTGATTTGCATGGACTTGGTGTTGGCACATCCGGAAAGTCCATTGGAGATCAATCCAGTGTCGGTCATCAATGATGTTGATCCTTTCTTTGCAAAGAACATCTCAGGCGAAATGCTCAAGCTTTCTGGTAATGATCATAATGAAGACTCTTGTATTGATAATGAGAATGCTGTTAAGGAAAAATTAGGGTCGTCGCGAAAGGTTATAGTGTTATGCAATGACCTAAGCTTTGCGGCAGAATCAACTCCTGTGATATGTGTAGTAGATCTACAAGTACTAAATTATCTTTGTGAGCAAGAGAGATATGTATATCTTCCTAAGCCTTGGGAGATGTTTACCTATGTGACAAAGCCGATTCTTCATCAACTGCGTAGTCTTGATTCTGAGGTATTTATATCTTTGATTTAATTTTTCTATGATCAAACTGTAATGATACGGCAGTTCATTTCTAGTATACGAAAATAAATGTTTTTTGTTTCTTTTATTTTTCAAAAATAGCTTCTATGTAGTTGTGTTTTGTTAAGGAGCTAAATCGGACGAAATTCTATCATTGAGAACTCACAAGAATACAGATTTTGGCATTTAAAAAGAAAAATTGGAGCTAGAGAATGTTTTCAAAGAAAAATCACTTCATCCTTGTGGTTTTTTTCCCGACAATATTTAACCTGCTATTTTGTTAGCAGGATCTGCAACTGTCTTGTAATTGCTTATATTCTACTTGCTGTCCTGAAACGTGTGATCACGTATACCTTTTTGATGAAGAAAAGGACATATTTGGGAAACCAATGGCCGGAAGGTTCGCATACGATGTAAATGGTCGAATCATATTGGAGGTAAACTATTTCCATTAATTGTAAACTACAATATATCCCTAACCCATGCTGTTCTGAATATGTTAAGCATTGTTTGTTAACACCATATCAAGAATATGCTAAAATCCTAACATATTCATTTTGTAGGTATTTTATTTACTTTTTTAGAATTACCTAGTAGAATTTACATCTTACATTTCTCTTTTCTATTTCTGTATTATTATTAATCTATAACTAATTTTTTCCAATGCTGGAAATTTCTCTACAAAACTTCAGGAAGGTAGTTTTGTCTTCGAGTGTAACGATAAGTGCGGATGCAATAAAACCTGTCCAAACAGAATATTGCAGAACGGAGTTCGTGTTAAATTGGAGGTCTTTATGACAGAGAAAAAGGTGGCAACTATTCTTCTTTTAATAAATTCACAATGACTCTCAAAAAGCTTTTTATGTTGACGTTTGTTATCTGATTCACAGGGATTCGGAGTAAGGGCTGGCGAAGCTATTTTGCGTGGCACGTTTGTGTGTGAGTACATTGGTGAAGTTTTAGAGCAGCAGGAGGCACACAACAGACGCGGAAGGTTTACATTTCTTCCAAGACGTAATCTCTTCTTTTGTATGCTTGATGTTTCTTCCTTTTTACTGACTTGGCCTGTTTTAATACCAAATATAGCAAAGAAAATTGCAGTTATTTCTTAGACATTGATGCTCGTGCTAACCATATGAGTAGATTGGTCGAAGGACATCCCCGATATGTCATTGATTCTACTACATATGGCAATGTGTCTAGGTTCATCAATAACAGGTGAGCATAGATTTGATAAGACAAAAAATTAACATGGTGCAATTTGTTCATTTTTAATTGGCAACATCGTTAGGACTTTGATATTATTTCCTTGAACATAAGATGGTTTTGATATATTCTGAATATGATTAAGCATAAGATTTTATTTCCAAAAAGTTATTAAATGTGTAGAAAATATTTCTAATTTGTTTCAAAGCTGATAAAAGAGTACAAACATTAATAATTAAATTTATATAGACTACTTTAAACTTAACGGACCTGATTAATGTGTTAAATACAATTATCATACATAATTACAAAATAAACGCTATTTACAACTAAATGATTGGTGGTTTGCTATTATTGTTGTTGCAGCTGTTCACCCAATCTTGTGATTACAGAGTTATTGTAGAGGGCACGGATTGTAAGCATACACATATCGGTCTTTACGCAAGTCGAGATGTGAGTATTGTCTCCTCTATATGCACACACCACTTATTTTAGAGAAATAAAAAATTCCATTATTGTTACAAGTTACTGCTTGATTGTGAACAGTTGACATCAGTACGGATTAGATTTGACTTTGTTTCTTGTTAACAGATTGCTTTGCATGAAGAATTGACATATAATTATGACTATGAGCCTGTGCTCGTAGAAGGATATCCTTGTCTTTGTGGATCTTTGAAATGCTGA

Protein sequence

>MS.gene28512.t1

MAMLHNEEHICVVNREYDISKMDDELSDSSVVMKESDIENQRDSLSLQESTEMISYSSGTVSRPVDEMAIQIFVEPGTKDRQCRAYVKDKGRQCVRTTIGSNIYCCAHFSNKRERRLKVSTPICGGTTGSGNSCKYRSRPGFSFCKRHWHKAETGQTSNSNRRTLKRKAEENCGGSQNLICMDLVLAHPESPLEINPVSVINDVDPFFAKNISGEMLKLSGNDHNEDSCIDNENAVKEKLGSSRKVIVLCNDLSFAAESTPVICVVDLQVLNYLCEQERYVYLPKPWEMFTYVTKPILHQLRSLDSEDLQLSCNCLYSTCCPETCDHVYLFDEEKDIFGKPMAGRFAYDVNGRIILEEGSFVFECNDKCGCNKTCPNRILQNGVRVKLEVFMTEKKGFGVRAGEAILRGTFVCEYIGEVLEQQEAHNRRGSKENCSYFLDIDARANHMSRLVEGHPRYVIDSTTYGNVSRFINNRVIVEGTDCKHTHIGLYASRDIALHEELTYNYDYEPVLVEGYPCLCGSLKC