AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28573

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28573.t1 MTR_8g079620 84.411 263 16 2 1 263 1 238 1.38e-157 437
MS.gene28573.t1 MTR_8g079660 75.285 263 53 1 1 251 1 263 3.90e-143 402
MS.gene28573.t1 MTR_8g079580 48.851 174 81 3 1 171 1 169 3.45e-51 167
MS.gene28573.t1 MTR_5g017950 54.955 111 50 0 8 118 8 118 1.93e-37 134
MS.gene28573.t1 MTR_3g073690 52.727 110 52 0 8 117 9 118 7.04e-37 129
MS.gene28573.t1 MTR_3g452660 45.562 169 70 4 8 155 7 174 2.32e-36 130
MS.gene28573.t1 MTR_4g105170 50.000 104 52 0 8 111 11 114 1.55e-32 118
MS.gene28573.t1 MTR_3g077240 49.038 104 53 0 8 111 10 113 1.74e-31 115
MS.gene28573.t1 MTR_2g093310 44.361 133 69 2 5 135 30 159 4.54e-31 114
MS.gene28573.t1 MTR_7g033800 47.115 104 55 0 8 111 11 114 5.60e-31 113
MS.gene28573.t1 MTR_3g031660 43.564 101 57 0 8 108 7 107 4.60e-30 111
MS.gene28573.t1 MTR_5g083230 45.536 112 59 1 8 117 6 117 1.54e-29 109
MS.gene28573.t1 MTR_8g040900 48.696 115 59 0 8 122 7 121 1.61e-29 111
MS.gene28573.t1 MTR_5g083010 49.020 102 52 0 9 110 12 113 2.11e-29 109
MS.gene28573.t1 MTR_3g071590 45.545 101 55 0 8 108 8 108 3.49e-29 108
MS.gene28573.t1 MTR_2g068760 46.602 103 55 0 6 108 11 113 3.96e-29 108
MS.gene28573.t1 MTR_4g083680 40.876 137 74 2 8 144 15 144 1.10e-28 107
MS.gene28573.t1 MTR_6g005080 43.269 104 59 0 8 111 10 113 3.29e-28 105
MS.gene28573.t1 MTR_6g005070 45.370 108 58 1 8 115 9 115 9.33e-28 104
MS.gene28573.t1 MTR_4g060950 40.146 137 79 3 5 140 21 155 9.39e-28 105
MS.gene28573.t1 MTR_3g094690 44.340 106 59 0 6 111 45 150 1.47e-26 103
MS.gene28573.t1 MTR_1g095850 47.525 101 53 0 9 109 73 173 2.03e-26 103
MS.gene28573.t1 MTR_5g083960 44.231 104 58 0 8 111 39 142 2.65e-26 102
MS.gene28573.t1 MTR_3g094690 45.283 106 57 1 6 111 45 149 7.35e-26 102
MS.gene28573.t1 MTR_3g071420 47.423 97 51 0 9 105 15 111 4.73e-25 98.6
MS.gene28573.t1 MTR_6g027700 44.660 103 56 1 4 105 3 105 6.80e-25 98.6
MS.gene28573.t1 MTR_5g075020 41.739 115 67 0 6 120 41 155 2.16e-24 97.8
MS.gene28573.t1 MTR_5g075020 41.739 115 67 0 6 120 45 159 3.22e-24 97.4
MS.gene28573.t1 MTR_6g027710 41.667 108 62 1 2 108 34 141 3.87e-24 97.1
MS.gene28573.t1 MTR_4g099230 45.098 102 55 1 9 109 3 104 4.25e-24 95.1
MS.gene28573.t1 MTR_8g036085 45.714 105 56 1 8 111 23 127 8.66e-24 96.3
MS.gene28573.t1 MTR_7g028905 37.143 105 66 0 5 109 2 106 1.33e-23 92.8
MS.gene28573.t1 MTR_7g096530 42.718 103 58 1 8 109 14 116 4.15e-23 94.4
MS.gene28573.t1 MTR_5g093010 37.624 101 63 0 9 109 6 106 7.69e-23 91.7
MS.gene28573.t1 MTR_8g017090 37.143 105 66 0 7 111 11 115 8.95e-22 92.4
MS.gene28573.t1 MTR_6g011250 41.346 104 60 1 7 109 8 111 1.10e-21 89.7
MS.gene28573.t1 MTR_7g074990 44.118 102 56 1 8 108 20 121 3.44e-21 89.7
MS.gene28573.t1 MTR_6g011200 40.367 109 61 2 5 109 3 111 5.17e-21 89.4
MS.gene28573.t1 MTR_4g107450 39.216 102 62 0 7 108 9 110 1.19e-20 89.4
MS.gene28573.t1 MTR_1g070220 41.584 101 58 1 8 107 15 115 1.43e-20 87.0
MS.gene28573.t1 MTR_1g070205 43.269 104 58 1 8 110 12 115 2.05e-20 87.4
MS.gene28573.t1 MTR_8g036105 42.718 103 58 1 8 109 18 120 8.52e-20 85.5
MS.gene28573.t1 MTR_7g096610 40.385 104 61 1 8 110 8 111 2.04e-19 84.3
MS.gene28573.t1 MTR_5g085390 40.367 109 61 2 5 109 3 111 4.55e-19 84.0
MS.gene28573.t1 MTR_6g011230 35.354 99 64 0 7 105 10 108 8.62e-19 82.4
MS.gene28573.t1 MTR_5g080470 37.864 103 63 1 9 110 8 110 8.72e-18 79.3
MS.gene28573.t1 MTR_2g100020 33.981 103 68 0 7 109 18 120 1.29e-17 80.5
MS.gene28573.t1 MTR_7g075230 40.952 105 59 2 8 109 12 116 6.83e-17 77.0
MS.gene28573.t1 MTR_4g088035 37.209 86 54 0 9 94 7 92 7.77e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28573.t1 AT5G66870 44.231 156 74 2 8 163 7 149 2.99e-35 128
MS.gene28573.t1 AT1G65620 57.692 104 44 0 8 111 9 112 6.19e-33 119
MS.gene28573.t1 AT1G65620 57.692 104 44 0 8 111 9 112 6.19e-33 119
MS.gene28573.t1 AT1G65620 57.692 104 44 0 8 111 9 112 6.19e-33 119
MS.gene28573.t1 AT1G65620 57.692 104 44 0 8 111 9 112 6.19e-33 119
MS.gene28573.t1 AT1G65620 57.692 104 44 0 8 111 9 112 6.19e-33 119
MS.gene28573.t1 AT5G63090 50.962 104 51 0 8 111 11 114 4.98e-32 116
MS.gene28573.t1 AT5G63090 50.962 104 51 0 8 111 11 114 4.98e-32 116
MS.gene28573.t1 AT5G63090 50.962 104 51 0 8 111 11 114 4.98e-32 116
MS.gene28573.t1 AT5G63090 50.962 104 51 0 8 111 11 114 4.98e-32 116
MS.gene28573.t1 AT2G23660 51.818 110 53 0 8 117 5 114 7.19e-32 119
MS.gene28573.t1 AT2G23660 51.818 110 53 0 8 117 5 114 7.19e-32 119
MS.gene28573.t1 AT2G23660 51.818 110 53 0 8 117 5 114 7.19e-32 119
MS.gene28573.t1 AT1G07900 46.226 106 57 0 3 108 28 133 2.95e-29 109
MS.gene28573.t1 AT3G27650 47.115 104 55 0 8 111 39 142 3.93e-29 108
MS.gene28573.t1 AT2G30130 46.535 101 54 0 8 108 8 108 6.28e-29 108
MS.gene28573.t1 AT2G28500 47.115 104 55 0 5 108 52 155 6.50e-29 110
MS.gene28573.t1 AT1G16530 47.115 104 54 1 6 108 12 115 6.82e-28 105
MS.gene28573.t1 AT1G31320 50.000 88 44 0 8 95 13 100 2.28e-27 104
MS.gene28573.t1 AT3G26660 41.584 101 59 0 9 109 6 106 1.72e-25 97.8
MS.gene28573.t1 AT3G26620 41.584 101 59 0 9 109 6 106 2.39e-25 97.4
MS.gene28573.t1 AT2G30340 43.396 106 60 0 6 111 51 156 2.71e-25 101
MS.gene28573.t1 AT2G30340 43.396 106 60 0 6 111 50 155 3.21e-25 101
MS.gene28573.t1 AT3G11090 44.000 100 56 0 9 108 12 111 3.50e-25 98.2
MS.gene28573.t1 AT2G40470 42.241 116 67 0 6 121 18 133 3.66e-25 99.4
MS.gene28573.t1 AT2G40470 42.241 116 67 0 6 121 43 158 1.37e-24 98.2
MS.gene28573.t1 AT3G50510 42.342 111 63 1 1 111 6 115 1.40e-24 97.8
MS.gene28573.t1 AT3G50510 42.342 111 63 1 1 111 6 115 1.40e-24 97.8
MS.gene28573.t1 AT5G35900 43.269 104 59 0 9 112 6 109 6.19e-24 96.3
MS.gene28573.t1 AT3G47870 39.806 103 62 0 9 111 37 139 9.22e-23 95.5
MS.gene28573.t1 AT1G72980 39.000 100 61 0 9 108 14 113 4.84e-22 91.3
MS.gene28573.t1 AT4G00210 43.689 103 57 1 8 109 11 113 1.97e-21 89.7
MS.gene28573.t1 AT3G03760 43.137 102 57 1 8 108 51 152 2.43e-21 90.9
MS.gene28573.t1 AT2G42430 40.777 103 60 1 8 109 15 117 3.70e-21 89.7
MS.gene28573.t1 AT3G13850 37.864 103 64 0 9 111 37 139 6.47e-21 89.4
MS.gene28573.t1 AT3G58190 42.308 104 59 1 8 110 11 114 2.17e-20 87.0
MS.gene28573.t1 AT2G45420 43.000 100 56 1 11 109 40 139 8.23e-20 86.3
MS.gene28573.t1 AT2G42440 38.462 104 63 1 8 110 7 110 2.59e-19 84.7
MS.gene28573.t1 AT4G00220 44.000 100 55 1 11 109 20 119 3.01e-19 84.3
MS.gene28573.t1 AT2G45410 42.000 100 57 1 11 109 19 118 8.50e-18 79.3
MS.gene28573.t1 AT4G22700 37.302 126 75 4 9 131 6 130 2.77e-17 78.2
MS.gene28573.t1 AT2G31310 36.538 104 65 1 8 110 7 110 1.79e-16 75.9
MS.gene28573.t1 AT5G06080 34.286 105 68 1 8 111 7 111 5.30e-15 71.6
MS.gene28573.t1 AT1G06280 36.709 79 50 0 7 85 23 101 2.67e-13 67.4

Find 93 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCCTGTTCATGATTC+TGG 0.107641 8.4:-27098129 MS.gene28573:CDS
CTTCTGTGCTTCCTTCTTCT+AGG 0.193943 8.4:-27098059 MS.gene28573:CDS
ATGTTCCTGTTCATGATTCT+GGG 0.297022 8.4:-27098128 MS.gene28573:CDS
AAACGCTCCGGGTTGTCCTT+TGG 0.348382 8.4:+27098669 None:intergenic
GTTCATGATTCTGGGTTGGC+TGG 0.362539 8.4:-27098120 MS.gene28573:CDS
GACCTGAGGATTGAGGTATT+TGG 0.365999 8.4:+27098431 None:intergenic
CTACCTTGAAGGTCATTTGC+TGG 0.366573 8.4:+27098501 None:intergenic
GCCAAGGTACACTCGGTGTT+TGG 0.385228 8.4:-27098645 MS.gene28573:CDS
AGCAACCAGGGTCGATTGCC+GGG 0.393568 8.4:-27098003 MS.gene28573:CDS
AAGCAACCAGGGTCGATTGC+CGG 0.397461 8.4:-27098004 MS.gene28573:CDS
GGCTTAAATCCAAAACAATC+AGG 0.404784 8.4:+27098387 None:intergenic
TTCTGTGCTTCCTTCTTCTA+GGG 0.409577 8.4:-27098058 MS.gene28573:CDS
GAGGAACATGAGGAAGCATC+TGG 0.409895 8.4:+27098094 None:intergenic
CTAAAACAAAAGCTTCTTAG+TGG 0.418812 8.4:-27098261 MS.gene28573:CDS
CAGGAACATCAGCACCCATC+TGG 0.437219 8.4:+27098142 None:intergenic
TGTACCTTGGCAAAACGCTC+CGG 0.437928 8.4:+27098657 None:intergenic
AGCACAGAAGGAGCATCAAC+AGG 0.442967 8.4:+27098072 None:intergenic
AGCTAGGGTGGCACTTCCTA+TGG 0.445033 8.4:+27098712 None:intergenic
TCCTGTTCATGATTCTGGGT+TGG 0.449021 8.4:-27098124 MS.gene28573:CDS
GACAGTCGGTGGAGGACCAT+TGG 0.450872 8.4:-27098343 MS.gene28573:CDS
CTTCATTCAACCTACCTTGA+AGG 0.452245 8.4:+27098490 None:intergenic
GCCAACCCATCATCACCATC+GGG 0.452840 8.4:+27098237 None:intergenic
GGGTTGTCCTTTGGAAAGTA+AGG 0.456967 8.4:+27098678 None:intergenic
AGTGGCCCCGATGGTGATGA+TGG 0.469173 8.4:-27098243 MS.gene28573:CDS
GGTGGTTCAGTCGGTGGTAG+TGG 0.471163 8.4:-27098180 MS.gene28573:CDS
CAGGAACATTAACATCCATC+TGG 0.471455 8.4:+27098208 None:intergenic
GACCCTATCCATGGTTGTGC+GGG 0.480158 8.4:-27098525 MS.gene28573:CDS
ACAGTCGGTGGAGGACCATT+GGG 0.481003 8.4:-27098342 MS.gene28573:CDS
GGCTCCCCGGCAATCGACCC+TGG 0.481884 8.4:+27097998 None:intergenic
GCCAACCCAGAATCATGAAC+AGG 0.484253 8.4:+27098123 None:intergenic
ATAGTCGGTGGAGAAGCATT+TGG 0.487182 8.4:+27098366 None:intergenic
TGGTGTATGAAGCTGATGCC+TGG 0.491815 8.4:-27098554 MS.gene28573:CDS
CCGACTGAACCACCACCAAC+AGG 0.496150 8.4:+27098189 None:intergenic
TAAGGAGCTAAGACACAGCT+AGG 0.498376 8.4:+27098696 None:intergenic
TGCCAACCCATCATCACCAT+CGG 0.501173 8.4:+27098236 None:intergenic
TGAACAAGCTGTTGAATCCT+TGG 0.502541 8.4:-27098574 MS.gene28573:CDS
GTTAATGTTCCTGTTGGTGG+TGG 0.504572 8.4:-27098198 MS.gene28573:CDS
GATGTTAATGTTCCTGTTGG+TGG 0.510237 8.4:-27098201 MS.gene28573:CDS
CAAAAGTATGAAGAATGAAC+TGG 0.512080 8.4:-27098454 MS.gene28573:CDS
TAGGTTGAATGAAGCTCAAA+CGG 0.515884 8.4:-27098481 MS.gene28573:CDS
AAAGTATCAGCCCTAGAAGA+AGG 0.518742 8.4:+27098048 None:intergenic
GATGGTGATGATGGGTTGGC+AGG 0.524172 8.4:-27098234 MS.gene28573:CDS
CTAGAAGAAGGAAGCACAGA+AGG 0.524800 8.4:+27098060 None:intergenic
GACCCGCACAACCATGGATA+GGG 0.528727 8.4:+27098523 None:intergenic
TTGCTGGACCCGCACAACCA+TGG 0.531067 8.4:+27098517 None:intergenic
CTTAGCTCCTTACTTTCCAA+AGG 0.539710 8.4:-27098685 MS.gene28573:CDS
CCCCGATGGTGATGATGGGT+TGG 0.540092 8.4:-27098238 MS.gene28573:CDS
GATCAAACGTTGTGGCTCCC+CGG 0.541997 8.4:+27097985 None:intergenic
ATGAAGCTGATGCCTGGTTG+AGG 0.542839 8.4:-27098548 MS.gene28573:CDS
GTACCTTGGCAAAACGCTCC+GGG 0.543602 8.4:+27098658 None:intergenic
TCCAAACACCGAGTGTACCT+TGG 0.546759 8.4:+27098644 None:intergenic
GGTCCAGCAAATGACCTTCA+AGG 0.548176 8.4:-27098504 MS.gene28573:CDS
AGTCGGTGGTAGTGGTGGCT+CGG 0.550407 8.4:-27098172 MS.gene28573:CDS
GGCCAAATACCTCAATCCTC+AGG 0.557788 8.4:-27098433 MS.gene28573:CDS
TGGCTCGGCAAGATTCCAGA+TGG 0.560308 8.4:-27098157 MS.gene28573:CDS
GGACCCGCACAACCATGGAT+AGG 0.560372 8.4:+27098522 None:intergenic
CCTGTTGGTGGTGGTTCAGT+CGG 0.562105 8.4:-27098189 MS.gene28573:CDS
AGATGCTTGCAAGCTGCACA+TGG 0.564745 8.4:+27098735 None:intergenic
GGACCCTATCCATGGTTGTG+CGG 0.567733 8.4:-27098526 MS.gene28573:CDS
TAGCACTAGCACAAGCAACC+AGG 0.569645 8.4:-27098016 MS.gene28573:CDS
TGAAGCTGATGCCTGGTTGA+GGG 0.570610 8.4:-27098547 MS.gene28573:CDS
GGCTCGGCAAGATTCCAGAT+GGG 0.571382 8.4:-27098156 MS.gene28573:CDS
ATGGATAGGGTCCCTCAACC+AGG 0.574346 8.4:+27098536 None:intergenic
ATTCAACGACCTGAGGATTG+AGG 0.583762 8.4:+27098424 None:intergenic
CAGCTTGCAAGCATCTCCAT+AGG 0.587034 8.4:-27098728 MS.gene28573:CDS
AAGCTTCTTAGTGGCCCCGA+TGG 0.587409 8.4:-27098252 MS.gene28573:CDS
ATGGATGTTAATGTTCCTGT+TGG 0.590588 8.4:-27098204 MS.gene28573:CDS
TGGTTGAGGGACCCTATCCA+TGG 0.595646 8.4:-27098534 MS.gene28573:CDS
TGAGTCGTTAACTCAGCAGC+TGG 0.600497 8.4:+27098306 None:intergenic
GCAACCAGGGTCGATTGCCG+GGG 0.604916 8.4:-27098002 MS.gene28573:CDS
CCTCCACCGACTGTCATAGT+CGG 0.607543 8.4:+27098351 None:intergenic
GGTTCAGTCGGTGGTAGTGG+TGG 0.608000 8.4:-27098177 MS.gene28573:CDS
GCATCAACAGGAGGAACATG+AGG 0.622008 8.4:+27098084 None:intergenic
AGGAACATGAGGAAGCATCT+GGG 0.622177 8.4:+27098095 None:intergenic
GGCAGCTGATTAAAACCCAA+TGG 0.624529 8.4:+27098327 None:intergenic
CGCCGCAAGATCAAACGTTG+TGG 0.625416 8.4:+27097977 None:intergenic
GAGCTAAGACACAGCTAGGG+TGG 0.629501 8.4:+27098700 None:intergenic
CAGCAAATGACCTTCAAGGT+AGG 0.629800 8.4:-27098500 MS.gene28573:CDS
CCACCGACTGTCATAGTCGG+TGG 0.630005 8.4:+27098354 None:intergenic
GTTGGTGGTGGTTCAGTCGG+TGG 0.631838 8.4:-27098186 MS.gene28573:CDS
TTACTTTCCAAAGGACAACC+CGG 0.635497 8.4:-27098676 MS.gene28573:CDS
AAGGAGCTAAGACACAGCTA+GGG 0.637825 8.4:+27098697 None:intergenic
CCGACTATGACAGTCGGTGG+AGG 0.638161 8.4:-27098351 MS.gene28573:CDS
GTGGCCCCGATGGTGATGAT+GGG 0.639305 8.4:-27098242 MS.gene28573:CDS
CCACCGACTATGACAGTCGG+TGG 0.655151 8.4:-27098354 MS.gene28573:CDS
GATGCTTGCAAGCTGCACAT+GGG 0.660822 8.4:+27098736 None:intergenic
AGCACTAGCACAAGCAACCA+GGG 0.667332 8.4:-27098015 MS.gene28573:CDS
TCTCCACCGACTATGACAGT+CGG 0.670674 8.4:-27098357 MS.gene28573:CDS
AGAACAAATTCAACGACCTG+AGG 0.672940 8.4:+27098417 None:intergenic
TGGGTTGGCAGGATTCCAGA+TGG 0.675884 8.4:-27098223 MS.gene28573:CDS
ACAGAAGGAGCATCAACAGG+AGG 0.677829 8.4:+27098075 None:intergenic
GGCATCAGCTTCATACACCA+AGG 0.679242 8.4:+27098557 None:intergenic
CCAACCCATCATCACCATCG+GGG 0.738435 8.4:+27098238 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CTAAAACAAAAGCTTCTTAG+TGG - chr8.4:27098482-27098501 MS.gene28573:CDS 30.0%
GACTAATCTGTTGAAAAAAC+TGG - chr8.4:27098133-27098152 MS.gene28573:CDS 30.0%
! CAAAAGTATGAAGAATGAAC+TGG - chr8.4:27098289-27098308 MS.gene28573:CDS 30.0%
!!! GCTTTTGTTTTAGAACTTCT+AGG + chr8.4:27098475-27098494 None:intergenic 30.0%
ATGGATGTTAATGTTCCTGT+TGG - chr8.4:27098539-27098558 MS.gene28573:CDS 35.0%
ATGTTCCTGTTCATGATTCT+GGG - chr8.4:27098615-27098634 MS.gene28573:CDS 35.0%
GGCTTAAATCCAAAACAATC+AGG + chr8.4:27098359-27098378 None:intergenic 35.0%
! TAGGTTGAATGAAGCTCAAA+CGG - chr8.4:27098262-27098281 MS.gene28573:CDS 35.0%
AGAACAAATTCAACGACCTG+AGG + chr8.4:27098329-27098348 None:intergenic 40.0%
CAGGAACATTAACATCCATC+TGG + chr8.4:27098538-27098557 None:intergenic 40.0%
CTTAGCTCCTTACTTTCCAA+AGG - chr8.4:27098058-27098077 MS.gene28573:CDS 40.0%
CTTCATTCAACCTACCTTGA+AGG + chr8.4:27098256-27098275 None:intergenic 40.0%
GATGTTAATGTTCCTGTTGG+TGG - chr8.4:27098542-27098561 MS.gene28573:CDS 40.0%
GATGTTCCTGTTCATGATTC+TGG - chr8.4:27098614-27098633 MS.gene28573:CDS 40.0%
TGAACAAGCTGTTGAATCCT+TGG - chr8.4:27098169-27098188 MS.gene28573:CDS 40.0%
TTACTTTCCAAAGGACAACC+CGG - chr8.4:27098067-27098086 MS.gene28573:CDS 40.0%
TTCTGTGCTTCCTTCTTCTA+GGG - chr8.4:27098685-27098704 MS.gene28573:CDS 40.0%
! AAAGTATCAGCCCTAGAAGA+AGG + chr8.4:27098698-27098717 None:intergenic 40.0%
! AGGGCTGATACTTTTGACAA+TGG - chr8.4:27098704-27098723 MS.gene28573:CDS 40.0%
!! CTCGCTTTTCCTGATTGTTT+TGG - chr8.4:27098347-27098366 MS.gene28573:CDS 40.0%
AAGGAGCTAAGACACAGCTA+GGG + chr8.4:27098049-27098068 None:intergenic 45.0%
ATTCAACGACCTGAGGATTG+AGG + chr8.4:27098322-27098341 None:intergenic 45.0%
CAGCAAATGACCTTCAAGGT+AGG - chr8.4:27098243-27098262 MS.gene28573:CDS 45.0%
CTACCTTGAAGGTCATTTGC+TGG + chr8.4:27098245-27098264 None:intergenic 45.0%
CTTCTGTGCTTCCTTCTTCT+AGG - chr8.4:27098684-27098703 MS.gene28573:CDS 45.0%
GGCAGCTGATTAAAACCCAA+TGG + chr8.4:27098419-27098438 None:intergenic 45.0%
TAAGGAGCTAAGACACAGCT+AGG + chr8.4:27098050-27098069 None:intergenic 45.0%
TCCTGTTCATGATTCTGGGT+TGG - chr8.4:27098619-27098638 MS.gene28573:CDS 45.0%
! CTAGAAGAAGGAAGCACAGA+AGG + chr8.4:27098686-27098705 None:intergenic 45.0%
! GACCTGAGGATTGAGGTATT+TGG + chr8.4:27098315-27098334 None:intergenic 45.0%
! GGGTTGTCCTTTGGAAAGTA+AGG + chr8.4:27098068-27098087 None:intergenic 45.0%
! GTTAATGTTCCTGTTGGTGG+TGG - chr8.4:27098545-27098564 MS.gene28573:CDS 45.0%
!! AGGAACATGAGGAAGCATCT+GGG + chr8.4:27098651-27098670 None:intergenic 45.0%
!! ATAGTCGGTGGAGAAGCATT+TGG + chr8.4:27098380-27098399 None:intergenic 45.0%
AGATGCTTGCAAGCTGCACA+TGG + chr8.4:27098011-27098030 None:intergenic 50.0%
AGCACTAGCACAAGCAACCA+GGG - chr8.4:27098728-27098747 MS.gene28573:CDS 50.0%
ATGAAGCTGATGCCTGGTTG+AGG - chr8.4:27098195-27098214 MS.gene28573:CDS 50.0%
CAGCTTGCAAGCATCTCCAT+AGG - chr8.4:27098015-27098034 MS.gene28573:CDS 50.0%
GATGCTTGCAAGCTGCACAT+GGG + chr8.4:27098010-27098029 None:intergenic 50.0%
GCATCAACAGGAGGAACATG+AGG + chr8.4:27098662-27098681 None:intergenic 50.0%
GCCAACCCAGAATCATGAAC+AGG + chr8.4:27098623-27098642 None:intergenic 50.0%
GGCATCAGCTTCATACACCA+AGG + chr8.4:27098189-27098208 None:intergenic 50.0%
GGCCAAATACCTCAATCCTC+AGG - chr8.4:27098310-27098329 MS.gene28573:CDS 50.0%
GGTCCAGCAAATGACCTTCA+AGG - chr8.4:27098239-27098258 MS.gene28573:CDS 50.0%
TAGCACTAGCACAAGCAACC+AGG - chr8.4:27098727-27098746 MS.gene28573:CDS 50.0%
TCCAAACACCGAGTGTACCT+TGG + chr8.4:27098102-27098121 None:intergenic 50.0%
TGAAGCTGATGCCTGGTTGA+GGG - chr8.4:27098196-27098215 MS.gene28573:CDS 50.0%
TGAGTCGTTAACTCAGCAGC+TGG + chr8.4:27098440-27098459 None:intergenic 50.0%
TGCCAACCCATCATCACCAT+CGG + chr8.4:27098510-27098529 None:intergenic 50.0%
TGGTGTATGAAGCTGATGCC+TGG - chr8.4:27098189-27098208 MS.gene28573:CDS 50.0%
TGTACCTTGGCAAAACGCTC+CGG + chr8.4:27098089-27098108 None:intergenic 50.0%
! GCGTTTTGCCAAGGTACACT+CGG - chr8.4:27098091-27098110 MS.gene28573:CDS 50.0%
! TCTCCACCGACTATGACAGT+CGG - chr8.4:27098386-27098405 MS.gene28573:CDS 50.0%
!! ACAGAAGGAGCATCAACAGG+AGG + chr8.4:27098671-27098690 None:intergenic 50.0%
!! AGCACAGAAGGAGCATCAAC+AGG + chr8.4:27098674-27098693 None:intergenic 50.0%
!! GAGGAACATGAGGAAGCATC+TGG + chr8.4:27098652-27098671 None:intergenic 50.0%
!! GTTCATGATTCTGGGTTGGC+TGG - chr8.4:27098623-27098642 MS.gene28573:CDS 50.0%
AAACGCTCCGGGTTGTCCTT+TGG + chr8.4:27098077-27098096 None:intergenic 55.0%
AAGCAACCAGGGTCGATTGC+CGG - chr8.4:27098739-27098758 MS.gene28573:CDS 55.0%
AAGCTTCTTAGTGGCCCCGA+TGG - chr8.4:27098491-27098510 MS.gene28573:CDS 55.0%
ACAGTCGGTGGAGGACCATT+GGG - chr8.4:27098401-27098420 MS.gene28573:CDS 55.0%
AGCTAGGGTGGCACTTCCTA+TGG + chr8.4:27098034-27098053 None:intergenic 55.0%
ATGGATAGGGTCCCTCAACC+AGG + chr8.4:27098210-27098229 None:intergenic 55.0%
CAGGAACATCAGCACCCATC+TGG + chr8.4:27098604-27098623 None:intergenic 55.0%
CCAACCCATCATCACCATCG+GGG + chr8.4:27098508-27098527 None:intergenic 55.0%
GACCCGCACAACCATGGATA+GGG + chr8.4:27098223-27098242 None:intergenic 55.0%
GACCCTATCCATGGTTGTGC+GGG - chr8.4:27098218-27098237 MS.gene28573:CDS 55.0%
GAGCTAAGACACAGCTAGGG+TGG + chr8.4:27098046-27098065 None:intergenic 55.0%
GCCAACCCATCATCACCATC+GGG + chr8.4:27098509-27098528 None:intergenic 55.0%
GGACCCTATCCATGGTTGTG+CGG - chr8.4:27098217-27098236 MS.gene28573:CDS 55.0%
GGCTCGGCAAGATTCCAGAT+GGG - chr8.4:27098587-27098606 MS.gene28573:CDS 55.0%
GTACCTTGGCAAAACGCTCC+GGG + chr8.4:27098088-27098107 None:intergenic 55.0%
TGGTTGAGGGACCCTATCCA+TGG - chr8.4:27098209-27098228 MS.gene28573:CDS 55.0%
! CCTCCACCGACTGTCATAGT+CGG + chr8.4:27098395-27098414 None:intergenic 55.0%
! TGGCTCGGCAAGATTCCAGA+TGG - chr8.4:27098586-27098605 MS.gene28573:CDS 55.0%
!! CCTGTTGGTGGTGGTTCAGT+CGG - chr8.4:27098554-27098573 MS.gene28573:CDS 55.0%
!! GATGGTGATGATGGGTTGGC+AGG - chr8.4:27098509-27098528 MS.gene28573:CDS 55.0%
!! GCCAAGGTACACTCGGTGTT+TGG - chr8.4:27098098-27098117 MS.gene28573:CDS 55.0%
!! TGGGTTGGCAGGATTCCAGA+TGG - chr8.4:27098520-27098539 MS.gene28573:CDS 55.0%
AGCAACCAGGGTCGATTGCC+GGG - chr8.4:27098740-27098759 MS.gene28573:CDS 60.0%
CCGACTATGACAGTCGGTGG+AGG - chr8.4:27098392-27098411 MS.gene28573:CDS 60.0%
CCGACTGAACCACCACCAAC+AGG + chr8.4:27098557-27098576 None:intergenic 60.0%
GACAGTCGGTGGAGGACCAT+TGG - chr8.4:27098400-27098419 MS.gene28573:CDS 60.0%
GGACCCGCACAACCATGGAT+AGG + chr8.4:27098224-27098243 None:intergenic 60.0%
GGTGGTTCAGTCGGTGGTAG+TGG - chr8.4:27098563-27098582 MS.gene28573:CDS 60.0%
TTGCTGGACCCGCACAACCA+TGG + chr8.4:27098229-27098248 None:intergenic 60.0%
! AGTGGCCCCGATGGTGATGA+TGG - chr8.4:27098500-27098519 MS.gene28573:CDS 60.0%
! CCACCGACTATGACAGTCGG+TGG - chr8.4:27098389-27098408 MS.gene28573:CDS 60.0%
! CCACCGACTGTCATAGTCGG+TGG + chr8.4:27098392-27098411 None:intergenic 60.0%
! GTGGCCCCGATGGTGATGAT+GGG - chr8.4:27098501-27098520 MS.gene28573:CDS 60.0%
!! AGTCGGTGGTAGTGGTGGCT+CGG - chr8.4:27098571-27098590 MS.gene28573:CDS 60.0%
!! CAACCCGGAGCGTTTTGCCA+AGG - chr8.4:27098082-27098101 MS.gene28573:CDS 60.0%
!! CCCCGATGGTGATGATGGGT+TGG - chr8.4:27098505-27098524 MS.gene28573:CDS 60.0%
!! GGTTCAGTCGGTGGTAGTGG+TGG - chr8.4:27098566-27098585 MS.gene28573:CDS 60.0%
!! GTTGGTGGTGGTTCAGTCGG+TGG - chr8.4:27098557-27098576 MS.gene28573:CDS 60.0%
GCAACCAGGGTCGATTGCCG+GGG - chr8.4:27098741-27098760 MS.gene28573:CDS 65.0%
GGCTCCCCGGCAATCGACCC+TGG + chr8.4:27098748-27098767 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 27097987 27098778 27097987 ID=MS.gene28573
chr8.4 mRNA 27097987 27098778 27097987 ID=MS.gene28573.t1;Parent=MS.gene28573
chr8.4 exon 27097987 27098778 27097987 ID=MS.gene28573.t1.exon1;Parent=MS.gene28573.t1
chr8.4 CDS 27097987 27098778 27097987 ID=cds.MS.gene28573.t1;Parent=MS.gene28573.t1
Gene Sequence

>MS.gene28573

ATGGATAGAGAGATTATTCGCCCATGTGCAGCTTGCAAGCATCTCCATAGGAAGTGCCACCCTAGCTGTGTCTTAGCTCCTTACTTTCCAAAGGACAACCCGGAGCGTTTTGCCAAGGTACACTCGGTGTTTGGAAAGAGAAATGTGACTAATCTGTTGAAAAAACTGGATGTTTCACATCATGAACAAGCTGTTGAATCCTTGGTGTATGAAGCTGATGCCTGGTTGAGGGACCCTATCCATGGTTGTGCGGGTCCAGCAAATGACCTTCAAGGTAGGTTGAATGAAGCTCAAACGGAGCTCAAAAGTATGAAGAATGAACTGGCCAAATACCTCAATCCTCAGGTCGTTGAATTTGTTCTCGCTTTTCCTGATTGTTTTGGATTTAAGCCAAATGCTTCTCCACCGACTATGACAGTCGGTGGAGGACCATTGGGTTTTAATCAGCTGCCAGCTGCTGAGTTAACGACTCAGCAGCTTCACAACCTAGAAGTTCTAAAACAAAAGCTTCTTAGTGGCCCCGATGGTGATGATGGGTTGGCAGGATTCCAGATGGATGTTAATGTTCCTGTTGGTGGTGGTTCAGTCGGTGGTAGTGGTGGCTCGGCAAGATTCCAGATGGGTGCTGATGTTCCTGTTCATGATTCTGGGTTGGCTGGATCCCAGATGCTTCCTCATGTTCCTCCTGTTGATGCTCCTTCTGTGCTTCCTTCTTCTAGGGCTGATACTTTTGACAATGGTAGCACTAGCACAAGCAACCAGGGTCGATTGCCGGGGAGCCACAACGTTTGA
Protein sequence

>MS.gene28573.t1

MDREIIRPCAACKHLHRKCHPSCVLAPYFPKDNPERFAKVHSVFGKRNVTNLLKKLDVSHHEQAVESLVYEADAWLRDPIHGCAGPANDLQGRLNEAQTELKSMKNELAKYLNPQVVEFVLAFPDCFGFKPNASPPTMTVGGGPLGFNQLPAAELTTQQLHNLEVLKQKLLSGPDGDDGLAGFQMDVNVPVGGGSVGGSGGSARFQMGADVPVHDSGLAGSQMLPHVPPVDAPSVLPSSRADTFDNGSTSTSNQGRLPGSHNV