AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28815

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28815.t1 MTR_7g109580 96.053 228 9 0 196 423 329 556 2.86e-159 461
MS.gene28815.t1 MTR_7g109580 83.251 203 24 3 1 198 1 198 8.22e-109 332
MS.gene28815.t1 MTR_1g086970 67.105 228 74 1 196 423 254 480 8.78e-107 324
MS.gene28815.t1 MTR_1g086970 45.299 117 49 6 89 199 9 116 5.32e-15 77.0
MS.gene28815.t1 MTR_2g034250 53.604 222 102 1 203 423 366 587 2.03e-77 251
MS.gene28815.t1 MTR_2g034260 52.155 232 106 3 196 423 356 586 1.48e-76 249
MS.gene28815.t1 MTR_2g034260 30.625 160 100 3 41 198 69 219 3.35e-11 65.5
MS.gene28815.t1 MTR_2g034280 50.000 232 111 3 196 423 347 577 8.48e-73 239
MS.gene28815.t1 MTR_3g065980 28.512 242 158 2 196 422 300 541 1.03e-27 115
MS.gene28815.t1 MTR_7g074650 34.956 226 140 6 197 421 573 792 1.18e-27 116
MS.gene28815.t1 MTR_7g027190 32.883 222 144 4 201 421 456 673 1.47e-27 115
MS.gene28815.t1 MTR_7g062120 33.790 219 138 4 208 421 524 740 8.46e-27 113
MS.gene28815.t1 MTR_2g097467 29.752 242 151 5 184 420 426 653 1.41e-23 103
MS.gene28815.t1 MTR_4g102790 30.638 235 147 7 197 420 432 661 1.49e-23 103
MS.gene28815.t1 MTR_2g097410 33.182 220 137 5 208 420 524 740 3.89e-23 102
MS.gene28815.t1 MTR_4g104020 29.185 233 148 8 196 421 298 520 6.82e-23 101
MS.gene28815.t1 MTR_2g097463 29.339 242 152 5 184 420 427 654 1.10e-22 100
MS.gene28815.t1 MTR_4g076020 32.877 219 137 7 206 421 218 429 2.07e-22 99.4
MS.gene28815.t1 MTR_2g026250 28.636 220 149 4 207 421 380 596 4.75e-22 99.0
MS.gene28815.t1 MTR_2g097473 28.899 218 148 4 208 420 438 653 6.30e-22 98.6
MS.gene28815.t1 MTR_4g064200 30.612 245 146 8 184 420 421 649 1.35e-21 97.8
MS.gene28815.t1 MTR_1g069725 27.530 247 167 6 182 420 220 462 1.90e-21 96.7
MS.gene28815.t1 MTR_4g064160 29.339 242 152 5 184 420 456 683 2.43e-21 97.1
MS.gene28815.t1 MTR_4g064120 29.907 214 144 4 208 416 409 621 1.39e-19 91.7
MS.gene28815.t1 MTR_4g133660 25.571 219 155 4 207 420 327 542 1.96e-19 90.9
MS.gene28815.t1 MTR_7g057230 26.293 232 163 3 193 420 429 656 2.03e-19 91.3
MS.gene28815.t1 MTR_2g097310 29.185 233 154 6 196 420 408 637 3.01e-19 90.5
MS.gene28815.t1 MTR_8g442410 33.548 155 93 5 271 421 377 525 4.85e-19 89.7
MS.gene28815.t1 MTR_4g064150 29.224 219 147 5 208 420 516 732 8.09e-19 89.4
MS.gene28815.t1 MTR_5g094450 27.778 216 147 5 212 421 320 532 3.84e-18 87.0
MS.gene28815.t1 MTR_2g097380 27.706 231 145 7 196 420 346 560 9.97e-18 85.9
MS.gene28815.t1 MTR_4g064180 28.241 216 149 4 206 416 407 621 1.39e-17 85.5
MS.gene28815.t1 MTR_2g097390 27.039 233 159 6 196 420 411 640 7.00e-17 83.2
MS.gene28815.t1 MTR_3g056110 25.446 224 159 5 203 421 322 542 7.09e-17 83.2
MS.gene28815.t1 MTR_4g077760 30.000 230 150 8 197 421 332 555 8.79e-17 82.8
MS.gene28815.t1 MTR_2g082090 27.354 223 142 8 209 420 365 578 1.92e-16 81.6
MS.gene28815.t1 MTR_4g097080 24.123 228 169 2 197 421 277 503 2.58e-16 81.3
MS.gene28815.t1 MTR_4g076140 32.317 164 99 6 265 421 311 469 9.80e-16 79.3
MS.gene28815.t1 MTR_6g047750 26.667 240 153 6 196 421 432 662 1.03e-14 76.6
MS.gene28815.t1 MTR_3g022830 27.647 170 116 4 254 422 274 437 1.98e-14 75.1
MS.gene28815.t1 MTR_2g097350 27.119 236 155 7 196 420 410 639 2.41e-14 75.5
MS.gene28815.t1 MTR_5g097480 23.474 213 155 5 214 421 335 544 6.90e-14 73.9
MS.gene28815.t1 MTR_5g009080 29.936 157 98 5 271 421 328 478 1.03e-13 73.2
MS.gene28815.t1 MTR_1g096030 24.901 253 152 10 196 423 222 461 2.23e-13 72.0
MS.gene28815.t1 MTR_3g089055 26.267 217 146 6 213 421 360 570 3.80e-13 71.6
MS.gene28815.t1 MTR_3g089055 26.267 217 146 6 213 421 355 565 3.88e-13 71.6
MS.gene28815.t1 MTR_1g029420 26.606 218 144 7 213 421 382 592 5.06e-13 71.2
MS.gene28815.t1 MTR_3g072710 27.189 217 149 7 209 420 287 499 1.50e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28815.t1 AT2G01570 30.303 231 155 3 196 422 354 582 2.86e-30 123
MS.gene28815.t1 AT3G03450 30.870 230 156 2 196 422 317 546 4.95e-30 122
MS.gene28815.t1 AT1G66350 30.263 228 153 3 196 422 285 507 3.62e-29 119
MS.gene28815.t1 AT1G14920 30.303 231 155 3 196 422 302 530 1.03e-28 118
MS.gene28815.t1 AT5G17490 28.947 228 161 1 196 422 290 517 9.43e-28 115
MS.gene28815.t1 AT3G54220 32.889 225 144 6 197 420 431 649 2.18e-25 109
MS.gene28815.t1 AT3G46600 29.279 222 144 5 208 421 155 371 8.82e-24 102
MS.gene28815.t1 AT3G46600 29.268 246 149 6 184 421 351 579 1.03e-23 103
MS.gene28815.t1 AT3G46600 29.279 222 144 5 208 421 331 547 1.46e-23 103
MS.gene28815.t1 AT2G29060 31.163 215 142 3 211 420 441 654 2.67e-23 102
MS.gene28815.t1 AT2G29065 29.461 241 148 6 196 420 393 627 2.79e-23 102
MS.gene28815.t1 AT2G29060 31.163 215 142 3 211 420 478 691 2.97e-23 102
MS.gene28815.t1 AT5G41920 35.242 227 129 11 201 421 186 400 3.94e-23 100
MS.gene28815.t1 AT2G37650 27.907 258 167 5 169 421 470 713 6.63e-23 102
MS.gene28815.t1 AT2G37650 27.907 258 167 5 169 421 458 701 6.91e-23 101
MS.gene28815.t1 AT1G07530 31.963 219 138 5 209 420 550 764 9.25e-23 101
MS.gene28815.t1 AT1G63100 28.870 239 154 6 197 420 391 628 1.34e-20 94.7
MS.gene28815.t1 AT1G63100 28.870 239 154 6 197 420 416 653 1.77e-20 94.4
MS.gene28815.t1 AT5G59450 26.250 240 158 6 196 421 364 598 1.45e-19 91.7
MS.gene28815.t1 AT1G07520 27.556 225 145 6 208 420 474 692 4.33e-19 90.1
MS.gene28815.t1 AT1G07520 27.556 225 145 6 208 420 475 693 4.58e-19 90.1
MS.gene28815.t1 AT1G07520 27.556 225 145 6 208 420 310 528 6.18e-19 89.4
MS.gene28815.t1 AT1G07520 27.556 225 145 6 208 420 310 528 6.18e-19 89.4
MS.gene28815.t1 AT4G17230 25.701 214 151 4 213 421 315 525 3.84e-17 84.0
MS.gene28815.t1 AT4G17230 25.701 214 151 4 213 421 315 525 3.84e-17 84.0
MS.gene28815.t1 AT1G55580 26.068 234 163 5 196 421 214 445 9.46e-17 82.4
MS.gene28815.t1 AT1G50600 25.561 223 154 6 206 421 309 526 2.12e-16 81.6
MS.gene28815.t1 AT1G50600 25.561 223 154 6 206 421 380 597 2.73e-16 81.6
MS.gene28815.t1 AT1G50600 25.112 223 155 6 206 421 384 601 2.74e-16 81.6
MS.gene28815.t1 AT2G04890 23.810 231 165 5 196 421 189 413 5.53e-15 76.6
MS.gene28815.t1 AT1G50420 23.264 288 147 8 201 421 199 479 3.50e-14 74.7
MS.gene28815.t1 AT5G66770 27.542 236 158 6 196 421 352 584 3.77e-14 74.7
MS.gene28815.t1 AT5G48150 23.611 216 155 5 212 421 279 490 1.83e-13 72.4
MS.gene28815.t1 AT5G48150 23.611 216 155 5 212 421 279 490 1.83e-13 72.4
MS.gene28815.t1 AT5G48150 23.611 216 155 5 212 421 279 490 1.83e-13 72.4
MS.gene28815.t1 AT5G48150 23.611 216 155 5 212 421 279 490 1.83e-13 72.4
MS.gene28815.t1 AT3G50650 26.941 219 149 6 212 421 326 542 6.99e-13 70.9

Find 58 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTAAAGCTTCTTCAAATT+TGG 0.128771 7.4:+5845876 MS.gene28815:CDS
CCTTATAGATTTGACCTTAA+TGG 0.142996 7.4:+5846006 MS.gene28815:CDS
TAAAACAGGTTTATATAAAA+AGG 0.190685 7.4:-5846580 None:intergenic
GAATGGGAAGTGTTTGATAT+TGG 0.247092 7.4:+5847103 MS.gene28815:CDS
ATTAAAGTCCTTAGAAAATA+TGG 0.247192 7.4:-5846675 None:intergenic
AATATCAAGGCAGAATTCTA+TGG 0.265930 7.4:+5846695 MS.gene28815:CDS
CAGCTTGGAGGTTTCTTTGA+TGG 0.281090 7.4:+5847156 MS.gene28815:CDS
GTTGTTGTTGATCATGATTT+TGG 0.285842 7.4:-5845657 None:intergenic
CCATTAAGGTCAAATCTATA+AGG 0.308445 7.4:-5846006 None:intergenic
CTCAACATTCTTCTTCTCAT+TGG 0.324901 7.4:+5845956 MS.gene28815:CDS
CTTCCTCAGATAAACCATTA+AGG 0.338720 7.4:-5846020 None:intergenic
AACATATCTTCTACTAAAAC+AGG 0.348026 7.4:-5846594 None:intergenic
ATGATTTCTCAGAATCTCTA+AGG 0.348847 7.4:-5845821 None:intergenic
GGTAGTTGTTCATTCTCATT+TGG 0.361963 7.4:-5845619 None:intergenic
CAAATCTATAAGGGTGTGTT+TGG 0.366485 7.4:-5845996 None:intergenic
GAAATGTGAAAATTGATGTT+TGG 0.381287 7.4:+5846964 MS.gene28815:CDS
AAGAACAAAATTGAAGAAAC+TGG 0.386217 7.4:+5846519 MS.gene28815:CDS
AATGGGAAGTGTTTGATATT+GGG 0.407459 7.4:+5847104 MS.gene28815:CDS
GAAGGAATAATAAGAGTAGC+TGG 0.427571 7.4:+5845922 MS.gene28815:CDS
TAGAAAATATGGAGAATAAA+CGG 0.437645 7.4:-5846664 None:intergenic
TTCTAAGGACTTTAATATCA+AGG 0.440021 7.4:+5846682 MS.gene28815:CDS
TTTGCGATGTGGAAAAGAAT+GGG 0.457035 7.4:+5847087 MS.gene28815:CDS
TTAGAGATTCTGAGAAATCA+TGG 0.458237 7.4:+5845823 MS.gene28815:CDS
GTGTCTAAAGAGTTTGATCA+TGG 0.459768 7.4:+5847059 MS.gene28815:CDS
CATTAAGGTCAAATCTATAA+GGG 0.469089 7.4:-5846005 None:intergenic
GGTATAGAATGGTGGAAACT+AGG 0.481546 7.4:+5847003 MS.gene28815:CDS
ATTCTTTGCAAGGTATAGAA+TGG 0.481831 7.4:+5846992 MS.gene28815:CDS
ATGTGTTTACCAAGCTGAAT+TGG 0.482893 7.4:+5847037 MS.gene28815:CDS
TGAAGCGTTGTTCTTCTACT+CGG 0.492367 7.4:+5846818 MS.gene28815:CDS
ACAGAAGGAATATTATCTGC+AGG 0.492833 7.4:+5846897 MS.gene28815:CDS
TGTATTCAATCTCAGCTTGG+AGG 0.499895 7.4:+5847144 MS.gene28815:CDS
CAACAACAAGAATTCGAAGT+TGG 0.519349 7.4:+5845673 MS.gene28815:CDS
TGTTCATTCTCATTTGGAAG+AGG 0.520704 7.4:-5845613 None:intergenic
CTTTAGACACCAATTCAGCT+TGG 0.526186 7.4:-5847046 None:intergenic
GTGTTTGATATTGGGATGGA+AGG 0.529103 7.4:+5847112 MS.gene28815:CDS
TGTTTGATATTGGGATGGAA+GGG 0.535874 7.4:+5847113 MS.gene28815:CDS
AGAACAACGCTTCAACGAAT+CGG 0.538399 7.4:-5846809 None:intergenic
TCAAGCACTATCATTATACA+TGG 0.539208 7.4:-5846750 None:intergenic
TTTGGAGAAGATTCTTTGCA+AGG 0.540946 7.4:+5846982 MS.gene28815:CDS
AGAAATATTGTCGCATCAGA+AGG 0.541164 7.4:+5846924 MS.gene28815:CDS
TCTAAGGATGATAAATATTG+TGG 0.555614 7.4:-5845805 None:intergenic
GTTTGATATTGGGATGGAAG+GGG 0.560675 7.4:+5847114 MS.gene28815:CDS
CAATGTATTCAATCTCAGCT+TGG 0.567255 7.4:+5847141 MS.gene28815:CDS
CAAGCTGAGATTGAATACAT+TGG 0.568796 7.4:-5847140 None:intergenic
GGAAGTGTTTGATATTGGGA+TGG 0.581535 7.4:+5847108 MS.gene28815:CDS
TTCTTCTACAAAGTCATGAG+TGG 0.586107 7.4:-5845527 None:intergenic
TCGCATCAGAAGGTAGAGAA+AGG 0.588622 7.4:+5846934 MS.gene28815:CDS
CATCAAAAGATGTCAACAGA+AGG 0.596462 7.4:+5845904 MS.gene28815:CDS
CAGAAGGAATATTATCTGCA+GGG 0.601009 7.4:+5846898 MS.gene28815:CDS
CTTTGCAAGGTATAGAATGG+TGG 0.606333 7.4:+5846995 MS.gene28815:CDS
TGACCTTAATGGTTTATCTG+AGG 0.606438 7.4:+5846017 MS.gene28815:CDS
GAGTGTAGGATGATAACAGA+AGG 0.608979 7.4:+5846882 MS.gene28815:CDS
TAATAAGAGTAGCTGGAGCA+AGG 0.609556 7.4:+5845929 MS.gene28815:CDS
TGAGCGAGGAGGATGAGTGT+AGG 0.628200 7.4:+5846868 MS.gene28815:CDS
TGTCTAAAGAGTTTGATCAT+GGG 0.633104 7.4:+5847060 MS.gene28815:CDS
GGCTGAAACATGTATGAGCG+AGG 0.648686 7.4:+5846854 MS.gene28815:CDS
GGTGGAAACTAGGTTTAGTG+AGG 0.671023 7.4:+5847013 MS.gene28815:CDS
TGAAACATGTATGAGCGAGG+AGG 0.773647 7.4:+5846857 MS.gene28815:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAGGTTTATATAAAAA+GGG - chr7.4:5846582-5846601 None:intergenic 15.0%
!! TAAAACAGGTTTATATAAAA+AGG - chr7.4:5846583-5846602 None:intergenic 15.0%
!!! AATTACTTTTATATTGTCAA+TGG + chr7.4:5846124-5846143 MS.gene28815:intron 15.0%
!! AATTGCATAACTTGATTAAA+AGG - chr7.4:5846327-5846346 None:intergenic 20.0%
!! ATTAAAGTCCTTAGAAAATA+TGG - chr7.4:5846678-5846697 None:intergenic 20.0%
!! TAGAAAATATGGAGAATAAA+CGG - chr7.4:5846667-5846686 None:intergenic 20.0%
!!! AAAAACTATGTTGTTTATCT+TGG - chr7.4:5845561-5845580 None:intergenic 20.0%
!!! AGATGATTTTGAAATTGAAA+AGG + chr7.4:5846629-5846648 MS.gene28815:CDS 20.0%
!!! ATAGATTTTGATATAAGAAG+TGG + chr7.4:5846402-5846421 MS.gene28815:intron 20.0%
!!! ATATTGTTTTCTAAAGGTTT+TGG - chr7.4:5845775-5845794 None:intergenic 20.0%
!!! TAGATTTTGATATAAGAAGT+GGG + chr7.4:5846403-5846422 MS.gene28815:intron 20.0%
!!! TATTTTGTTGATTAGTTTCT+AGG - chr7.4:5845729-5845748 None:intergenic 20.0%
!!! TTCTGAATATTGTTTTCTAA+AGG - chr7.4:5845781-5845800 None:intergenic 20.0%
!!! TTTATTCTCCATATTTTCTA+AGG + chr7.4:5846667-5846686 MS.gene28815:CDS 20.0%
! AACATATCTTCTACTAAAAC+AGG - chr7.4:5846597-5846616 None:intergenic 25.0%
! AAGAACAAAATTGAAGAAAC+TGG + chr7.4:5846519-5846538 MS.gene28815:CDS 25.0%
! AATCAAGTTATGCAATTTAC+TGG + chr7.4:5846330-5846349 MS.gene28815:intron 25.0%
! CATTAAGGTCAAATCTATAA+GGG - chr7.4:5846008-5846027 None:intergenic 25.0%
! GAAATGTGAAAATTGATGTT+TGG + chr7.4:5846964-5846983 MS.gene28815:CDS 25.0%
! TACTAAAGCTTCTTCAAATT+TGG + chr7.4:5845876-5845895 MS.gene28815:CDS 25.0%
! TCTAAGGATGATAAATATTG+TGG - chr7.4:5845808-5845827 None:intergenic 25.0%
!! GATAAACAACATAGTTTTTC+TGG + chr7.4:5845562-5845581 MS.gene28815:CDS 25.0%
!! TTCTAAGGACTTTAATATCA+AGG + chr7.4:5846682-5846701 MS.gene28815:CDS 25.0%
!! TTGCATGGTTGAAATTTTTA+AGG + chr7.4:5846470-5846489 MS.gene28815:intron 25.0%
!!! AGATTTTGATATAAGAAGTG+GGG + chr7.4:5846404-5846423 MS.gene28815:intron 25.0%
!!! ATTTTTAAGGTAAGTGCTAT+TGG + chr7.4:5846483-5846502 MS.gene28815:intron 25.0%
!!! TGTTTTAGTAGAAGATATGT+TGG + chr7.4:5846596-5846615 MS.gene28815:CDS 25.0%
!!! TTTTCTAAAGGTTTTGGAAT+TGG - chr7.4:5845769-5845788 None:intergenic 25.0%
!!! TTTTTCTGGAATACAATTGT+TGG + chr7.4:5845576-5845595 MS.gene28815:CDS 25.0%
AAACAGGAAGAGTGATTAAA+GGG + chr7.4:5846226-5846245 MS.gene28815:intron 30.0%
AATATCAAGGCAGAATTCTA+TGG + chr7.4:5846695-5846714 MS.gene28815:CDS 30.0%
ATGATTTCTCAGAATCTCTA+AGG - chr7.4:5845824-5845843 None:intergenic 30.0%
ATTCTTTGCAAGGTATAGAA+TGG + chr7.4:5846992-5847011 MS.gene28815:CDS 30.0%
CCATTAAGGTCAAATCTATA+AGG - chr7.4:5846009-5846028 None:intergenic 30.0%
CCTTATAGATTTGACCTTAA+TGG + chr7.4:5846006-5846025 MS.gene28815:CDS 30.0%
TCAAGCACTATCATTATACA+TGG - chr7.4:5846753-5846772 None:intergenic 30.0%
TCAATGGAATTCTTCTATCA+CGG + chr7.4:5846140-5846159 MS.gene28815:intron 30.0%
TGTCTAAAGAGTTTGATCAT+GGG + chr7.4:5847060-5847079 MS.gene28815:CDS 30.0%
! TTAGAGATTCTGAGAAATCA+TGG + chr7.4:5845823-5845842 MS.gene28815:CDS 30.0%
!! AATGGGAAGTGTTTGATATT+GGG + chr7.4:5847104-5847123 MS.gene28815:CDS 30.0%
!! GTTGTTGTTGATCATGATTT+TGG - chr7.4:5845660-5845679 None:intergenic 30.0%
!! TTTTGGTTGTTGAACATGTT+GGG - chr7.4:5845643-5845662 None:intergenic 30.0%
!!! ATTTTGGTTGTTGAACATGT+TGG - chr7.4:5845644-5845663 None:intergenic 30.0%
AAGTGAGTTACTTGACAAGA+TGG + chr7.4:5846266-5846285 MS.gene28815:intron 35.0%
ACAGAAGGAATATTATCTGC+AGG + chr7.4:5846897-5846916 MS.gene28815:CDS 35.0%
AGAAATATTGTCGCATCAGA+AGG + chr7.4:5846924-5846943 MS.gene28815:CDS 35.0%
AGTCATGAGTGGAAGAAAAA+TGG - chr7.4:5845519-5845538 None:intergenic 35.0%
AGTGAGTTACTTGACAAGAT+GGG + chr7.4:5846267-5846286 MS.gene28815:intron 35.0%
ATGTGTTTACCAAGCTGAAT+TGG + chr7.4:5847037-5847056 MS.gene28815:CDS 35.0%
CAACAACAAGAATTCGAAGT+TGG + chr7.4:5845673-5845692 MS.gene28815:CDS 35.0%
CAAGCTGAGATTGAATACAT+TGG - chr7.4:5847143-5847162 None:intergenic 35.0%
CAATGGAATTCTTCTATCAC+GGG + chr7.4:5846141-5846160 MS.gene28815:intron 35.0%
CAATGTATTCAATCTCAGCT+TGG + chr7.4:5847141-5847160 MS.gene28815:CDS 35.0%
CAGAAGGAATATTATCTGCA+GGG + chr7.4:5846898-5846917 MS.gene28815:CDS 35.0%
CATCAAAAGATGTCAACAGA+AGG + chr7.4:5845904-5845923 MS.gene28815:CDS 35.0%
CTCAACATTCTTCTTCTCAT+TGG + chr7.4:5845956-5845975 MS.gene28815:CDS 35.0%
CTTCCTCAGATAAACCATTA+AGG - chr7.4:5846023-5846042 None:intergenic 35.0%
GAAACAGGAAGAGTGATTAA+AGG + chr7.4:5846225-5846244 MS.gene28815:intron 35.0%
GAAGGAATAATAAGAGTAGC+TGG + chr7.4:5845922-5845941 MS.gene28815:CDS 35.0%
GAGAGAATAGAGAAAGAAAC+AGG + chr7.4:5846210-5846229 MS.gene28815:intron 35.0%
GGTAGTTGTTCATTCTCATT+TGG - chr7.4:5845622-5845641 None:intergenic 35.0%
GTGTCTAAAGAGTTTGATCA+TGG + chr7.4:5847059-5847078 MS.gene28815:CDS 35.0%
TGACCTTAATGGTTTATCTG+AGG + chr7.4:5846017-5846036 MS.gene28815:CDS 35.0%
TGTTCATTCTCATTTGGAAG+AGG - chr7.4:5845616-5845635 None:intergenic 35.0%
TGTTTGATATTGGGATGGAA+GGG + chr7.4:5847113-5847132 MS.gene28815:CDS 35.0%
TTCTTCTACAAAGTCATGAG+TGG - chr7.4:5845530-5845549 None:intergenic 35.0%
TTTGCGATGTGGAAAAGAAT+GGG + chr7.4:5847087-5847106 MS.gene28815:CDS 35.0%
TTTGGAGAAGATTCTTTGCA+AGG + chr7.4:5846982-5847001 MS.gene28815:CDS 35.0%
! CAAATCTATAAGGGTGTGTT+TGG - chr7.4:5845999-5846018 None:intergenic 35.0%
! TTTTGCGATGTGGAAAAGAA+TGG + chr7.4:5847086-5847105 MS.gene28815:CDS 35.0%
!! GAATGGGAAGTGTTTGATAT+TGG + chr7.4:5847103-5847122 MS.gene28815:CDS 35.0%
!!! GTTTTGGAATTGGAACTTTG+TGG - chr7.4:5845759-5845778 None:intergenic 35.0%
AGAACAACGCTTCAACGAAT+CGG - chr7.4:5846812-5846831 None:intergenic 40.0%
CTTTAGACACCAATTCAGCT+TGG - chr7.4:5847049-5847068 None:intergenic 40.0%
CTTTGCAAGGTATAGAATGG+TGG + chr7.4:5846995-5847014 MS.gene28815:CDS 40.0%
GAGTGTAGGATGATAACAGA+AGG + chr7.4:5846882-5846901 MS.gene28815:CDS 40.0%
GTGTTTGATATTGGGATGGA+AGG + chr7.4:5847112-5847131 MS.gene28815:CDS 40.0%
GTTTGATATTGGGATGGAAG+GGG + chr7.4:5847114-5847133 MS.gene28815:CDS 40.0%
TAATAAGAGTAGCTGGAGCA+AGG + chr7.4:5845929-5845948 MS.gene28815:CDS 40.0%
TGTATTCAATCTCAGCTTGG+AGG + chr7.4:5847144-5847163 MS.gene28815:CDS 40.0%
! GGTATAGAATGGTGGAAACT+AGG + chr7.4:5847003-5847022 MS.gene28815:CDS 40.0%
! TCATGGGAAATTTTGCGATG+TGG + chr7.4:5847076-5847095 MS.gene28815:CDS 40.0%
!! GGAAGTGTTTGATATTGGGA+TGG + chr7.4:5847108-5847127 MS.gene28815:CDS 40.0%
!! TGAAGCGTTGTTCTTCTACT+CGG + chr7.4:5846818-5846837 MS.gene28815:CDS 40.0%
!!! CTACTCGGCTTTTTTCGATA+TGG + chr7.4:5846833-5846852 MS.gene28815:CDS 40.0%
CTTGCATCAAAGCTATGCAC+TGG - chr7.4:5846431-5846450 None:intergenic 45.0%
GGTGGAAACTAGGTTTAGTG+AGG + chr7.4:5847013-5847032 MS.gene28815:CDS 45.0%
TCGCATCAGAAGGTAGAGAA+AGG + chr7.4:5846934-5846953 MS.gene28815:CDS 45.0%
TGAAACATGTATGAGCGAGG+AGG + chr7.4:5846857-5846876 MS.gene28815:CDS 45.0%
GGCTGAAACATGTATGAGCG+AGG + chr7.4:5846854-5846873 MS.gene28815:CDS 50.0%
TGCTGAGAGACAGGATTGCA+TGG + chr7.4:5846455-5846474 MS.gene28815:intron 50.0%
TGAGCGAGGAGGATGAGTGT+AGG + chr7.4:5846868-5846887 MS.gene28815:CDS 55.0%
! GCAAGCACTTGCTGAGAGAC+AGG + chr7.4:5846446-5846465 MS.gene28815:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 5845505 5847175 5845505 ID=MS.gene28815
chr7.4 mRNA 5845505 5847175 5845505 ID=MS.gene28815.t1;Parent=MS.gene28815
chr7.4 exon 5845505 5846092 5845505 ID=MS.gene28815.t1.exon1;Parent=MS.gene28815.t1
chr7.4 CDS 5845505 5846092 5845505 ID=cds.MS.gene28815.t1;Parent=MS.gene28815.t1
chr7.4 exon 5846492 5847175 5846492 ID=MS.gene28815.t1.exon2;Parent=MS.gene28815.t1
chr7.4 CDS 5846492 5847175 5846492 ID=cds.MS.gene28815.t1;Parent=MS.gene28815.t1
Gene Sequence

>MS.gene28815

ATGGAAATTGACCATTTTTCTTCCACTCATGACTTTGTAGAAGAAATTGTGTTCCAAGATAAACAACATAGTTTTTCTGGAATACAATTGTTGGAAGAAATTAACAATCCTCTTCCAAATGAGAATGAACAACTACCCAACATGTTCAACAACCAAAATCATGATCAACAACAACAAGAATTCGAAGTTGGTAATTTCTTGTCATTAGTAGAAGATATCAACCTAGAAACTAATCAACAAAATAATCATCACCACAAAGTTCCAATTCCAAAACCTTTAGAAAACAATATTCAGAAGATGCCACAATATTTATCATCCTTAGAGATTCTGAGAAATCATGGAAGCAGATTCAACAAGAAAAACACAATCAGTACTAAAGCTTCTTCAAATTTGGAACAGCATCAAAAGATGTCAACAGAAGGAATAATAAGAGTAGCTGGAGCAAGGTATACTCAACATTCTTCTTCTCATTGGAGTGAAATTTTTTGCATCCAAACACACCCTTATAGATTTGACCTTAATGGTTTATCTGAGGAAGAAAATAGAGACATTGAACTTGCACAGTTTCTCTATGTAGCAGCTGAAAGAGTAAGTTTGCAACAATATGAACGTGCAAAAAAATTACTTTTATATTGTCAATGGAATTCTTCTATCACGGGAAATTGTGTTCAAAGAATTGTCTTTCATTTTGCACAAGCACTTCAAGAGAGAATAGAGAAAGAAACAGGAAGAGTGATTAAAGGGTCAGATAAAAATGAAGAAAGTGAGTTACTTGACAAGATGGGTTCAAAAAAAGTACTTTTGTGTCATCAAAAACTTCCTTTTAATCAAGTTATGCAATTTACTGGAATACAAGCTATAGTTGAACATGTTAAGTTTGAGACTAAAATTCATCTAATAGATTTTGATATAAGAAGTGGGGTCCAGTGCATAGCTTTGATGCAAGCACTTGCTGAGAGACAGGATTGCATGGTTGAAATTTTTAAGGTAAGTGCTATTGGACTTAATACATGCAAGAACAAAATTGAAGAAACTGGCAAAAATTTAGCTAGTTTTGCTGAATCATTGAACTTGCCCTTTTTATATAAACCTGTTTTAGTAGAAGATATGTTGGAAATCAAAGAAGATGATTTTGAAATTGAAAAGGATGAAGCTGTTGCCGTTTATTCTCCATATTTTCTAAGGACTTTAATATCAAGGCAGAATTCTATGGAAAATTTGATGAGAGTTTTGAGATATATCAAACCATGTATAATGATAGTGCTTGAAACTGAAGCAAGTCTTAATTCGCAGTCTTTTGTGAACCGATTCGTTGAAGCGTTGTTCTTCTACTCGGCTTTTTTCGATATGGCTGAAACATGTATGAGCGAGGAGGATGAGTGTAGGATGATAACAGAAGGAATATTATCTGCAGGGATAAGAAATATTGTCGCATCAGAAGGTAGAGAAAGGACTGTTAGAAATGTGAAAATTGATGTTTGGAGAAGATTCTTTGCAAGGTATAGAATGGTGGAAACTAGGTTTAGTGAGGCATGTGTTTACCAAGCTGAATTGGTGTCTAAAGAGTTTGATCATGGGAAATTTTGCGATGTGGAAAAGAATGGGAAGTGTTTGATATTGGGATGGAAGGGGACTCCAATGTATTCAATCTCAGCTTGGAGGTTTCTTTGA
Protein sequence

>MS.gene28815.t1

MEIDHFSSTHDFVEEIVFQDKQHSFSGIQLLEEINNPLPNENEQLPNMFNNQNHDQQQQEFEVGNFLSLVEDINLETNQQNNHHHKVPIPKPLENNIQKMPQYLSSLEILRNHGSRFNKKNTISTKASSNLEQHQKMSTEGIIRVAGARYTQHSSSHWSEIFCIQTHPYRFDLNGLSEEENRDIELAQFLYVAAERVSAIGLNTCKNKIEETGKNLASFAESLNLPFLYKPVLVEDMLEIKEDDFEIEKDEAVAVYSPYFLRTLISRQNSMENLMRVLRYIKPCIMIVLETEASLNSQSFVNRFVEALFFYSAFFDMAETCMSEEDECRMITEGILSAGIRNIVASEGRERTVRNVKIDVWRRFFARYRMVETRFSEACVYQAELVSKEFDHGKFCDVEKNGKCLILGWKGTPMYSISAWRFL