Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28954.t1 | XP_013456557.1 | 99.6 | 282 | 1 | 0 | 1 | 282 | 1 | 282 | 4.40E-98 | 367.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28954.t1 | Q9LT23 | 61.5 | 244 | 80 | 4 | 6 | 243 | 58 | 293 | 3.4e-35 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28954.t1 | A0A072ULE0 | 99.6 | 282 | 1 | 0 | 1 | 282 | 29 | 310 | 3.1e-98 | 367.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28954.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28954.t1 | MTR_4g075480 | 99.291 | 282 | 2 | 0 | 1 | 282 | 1 | 282 | 0.0 | 575 |
| MS.gene28954.t1 | MTR_4g075480 | 99.291 | 282 | 2 | 0 | 1 | 282 | 29 | 310 | 0.0 | 574 |
| MS.gene28954.t1 | MTR_1g032600 | 53.957 | 278 | 110 | 5 | 6 | 272 | 77 | 347 | 4.80e-92 | 276 |
| MS.gene28954.t1 | MTR_4g081370 | 37.778 | 180 | 92 | 6 | 6 | 184 | 32 | 192 | 2.10e-25 | 100 |
| MS.gene28954.t1 | MTR_4g081370 | 44.361 | 133 | 57 | 3 | 6 | 137 | 76 | 192 | 9.96e-25 | 99.4 |
| MS.gene28954.t1 | MTR_2g082640 | 52.083 | 96 | 45 | 1 | 9 | 103 | 72 | 167 | 3.70e-23 | 95.1 |
| MS.gene28954.t1 | MTR_4g108360 | 45.000 | 100 | 55 | 0 | 7 | 106 | 51 | 150 | 6.72e-21 | 89.4 |
| MS.gene28954.t1 | MTR_1g043430 | 40.000 | 140 | 71 | 4 | 11 | 144 | 95 | 227 | 1.75e-18 | 82.8 |
| MS.gene28954.t1 | MTR_2g089000 | 45.263 | 95 | 51 | 1 | 11 | 104 | 110 | 204 | 2.82e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28954.t1 | AT3G19860 | 62.753 | 247 | 78 | 5 | 6 | 246 | 5 | 243 | 7.18e-96 | 284 |
| MS.gene28954.t1 | AT3G19860 | 62.753 | 247 | 78 | 5 | 6 | 246 | 36 | 274 | 1.68e-95 | 284 |
| MS.gene28954.t1 | AT3G19860 | 62.348 | 247 | 79 | 5 | 6 | 246 | 58 | 296 | 4.61e-95 | 283 |
| MS.gene28954.t1 | AT4G36060 | 43.636 | 275 | 105 | 7 | 9 | 274 | 29 | 262 | 6.71e-54 | 176 |
| MS.gene28954.t1 | AT4G36060 | 43.636 | 275 | 105 | 7 | 9 | 274 | 47 | 280 | 2.24e-53 | 175 |
| MS.gene28954.t1 | AT4G36060 | 44.255 | 235 | 89 | 5 | 9 | 235 | 29 | 229 | 8.69e-52 | 171 |
| MS.gene28954.t1 | AT4G36060 | 44.255 | 235 | 89 | 5 | 9 | 235 | 47 | 247 | 3.93e-51 | 169 |
| MS.gene28954.t1 | AT5G54680 | 37.975 | 158 | 70 | 4 | 11 | 167 | 76 | 206 | 8.48e-22 | 91.7 |
| MS.gene28954.t1 | AT4G14410 | 40.152 | 132 | 64 | 4 | 11 | 132 | 129 | 255 | 1.92e-18 | 83.2 |
| MS.gene28954.t1 | AT4G14410 | 40.152 | 132 | 64 | 4 | 11 | 132 | 129 | 255 | 1.92e-18 | 83.2 |
| MS.gene28954.t1 | AT4G14410 | 40.152 | 132 | 64 | 4 | 11 | 132 | 135 | 261 | 2.85e-18 | 82.8 |
| MS.gene28954.t1 | AT3G23210 | 35.606 | 132 | 77 | 2 | 11 | 134 | 138 | 269 | 6.42e-18 | 82.0 |
| MS.gene28954.t1 | AT1G51070 | 44.681 | 94 | 51 | 1 | 11 | 103 | 71 | 164 | 6.94e-18 | 80.9 |
| MS.gene28954.t1 | AT1G51070 | 44.681 | 94 | 51 | 1 | 11 | 103 | 137 | 230 | 1.54e-17 | 81.3 |
| MS.gene28954.t1 | AT3G23210 | 35.606 | 132 | 77 | 2 | 11 | 134 | 167 | 298 | 1.70e-17 | 81.3 |
| MS.gene28954.t1 | AT3G47640 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.50e-16 | 75.5 |
| MS.gene28954.t1 | AT3G47640 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.50e-16 | 75.5 |
| MS.gene28954.t1 | AT3G47640 | 37.113 | 97 | 61 | 0 | 7 | 103 | 28 | 124 | 8.50e-16 | 75.5 |
Find 70 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATAAAGCGACCATTCT+AGG | 0.234923 | 4.4:-34703894 | MS.gene28954:CDS |
| AATTGTATTCGGAGCTAAAA+AGG | 0.247255 | 4.4:+34703432 | None:intergenic |
| CGAACTACCTTCTGTGAAAC+TGG | 0.280327 | 4.4:+34703083 | None:intergenic |
| TCCTTAGTTGCAGCTGATAC+TGG | 0.331417 | 4.4:+34703623 | None:intergenic |
| TGTTGTTCAACAATTGTATT+CGG | 0.342434 | 4.4:+34703421 | None:intergenic |
| TTCTTCATCTCACAGTGTTC+AGG | 0.343603 | 4.4:-34703049 | MS.gene28954:CDS |
| GGTAGCCGGTCCCACGTATC+AGG | 0.344490 | 4.4:-34703364 | MS.gene28954:CDS |
| ACCAGTATCAGCTGCAACTA+AGG | 0.363603 | 4.4:-34703624 | MS.gene28954:CDS |
| GATACGTGGGACCGGCTACC+TGG | 0.378928 | 4.4:+34703367 | None:intergenic |
| ACATATGTTGAACAAGGGTT+AGG | 0.393166 | 4.4:+34703457 | None:intergenic |
| TCTGAAATGCAGACCCTGAT+AGG | 0.394717 | 4.4:-34703923 | MS.gene28954:intron |
| AGGATGTTGATTAGCATAGT+AGG | 0.395188 | 4.4:+34703489 | None:intergenic |
| TCTTTGAGCCTTGCTCTCCC+TGG | 0.396650 | 4.4:+34703315 | None:intergenic |
| GCAGGTACCGGCATTGGAAC+TGG | 0.401184 | 4.4:+34703538 | None:intergenic |
| TCCTGGGTCTTCCGCAGATC+AGG | 0.409087 | 4.4:-34703248 | MS.gene28954:intron |
| CTAGCAGGTGTAATTTCCAT+TGG | 0.415608 | 4.4:+34704272 | None:intergenic |
| GACCTTGAGTTGAAGACTCC+TGG | 0.425984 | 4.4:-34703265 | MS.gene28954:CDS |
| GTTTACTAACTTGAGAAGTA+AGG | 0.433635 | 4.4:+34703847 | None:intergenic |
| GTTCAATTTCCAGTTGTCTC+AGG | 0.452373 | 4.4:-34703707 | MS.gene28954:intron |
| CGCCTCTTCATCCAGGTAGC+CGG | 0.455426 | 4.4:-34703378 | MS.gene28954:CDS |
| ATAACGGAATGATCCATTGC+AGG | 0.461908 | 4.4:+34703586 | None:intergenic |
| GGCTACCTGGATGAAGAGGC+GGG | 0.476225 | 4.4:+34703380 | None:intergenic |
| TTCACAGAAGGTAGTTCGTT+AGG | 0.482876 | 4.4:-34703078 | MS.gene28954:CDS |
| GAACCAGCAGGTACCGGCAT+TGG | 0.486966 | 4.4:+34703532 | None:intergenic |
| AGGCTGACCGAGAAAAGTTA+AGG | 0.489877 | 4.4:-34704238 | MS.gene28954:CDS |
| GTTCCAATGCCGGTACCTGC+TGG | 0.492349 | 4.4:-34703535 | MS.gene28954:CDS |
| GGATGTTGATTAGCATAGTA+GGG | 0.493252 | 4.4:+34703490 | None:intergenic |
| CATATGTTGAACAAGGGTTA+GGG | 0.508234 | 4.4:+34703458 | None:intergenic |
| ACCGGCATTGGAACTGGATA+CGG | 0.508537 | 4.4:+34703544 | None:intergenic |
| ACCTTGAGTTGAAGACTCCT+GGG | 0.508601 | 4.4:-34703264 | MS.gene28954:CDS |
| AGCTCATCAAGTAGTGTAGT+GGG | 0.509577 | 4.4:-34703024 | MS.gene28954:CDS |
| TCCGTATCCAGTTCCAATGC+CGG | 0.524495 | 4.4:-34703545 | MS.gene28954:CDS |
| GAATGATCCATTGCAGGCCA+TGG | 0.527462 | 4.4:+34703592 | None:intergenic |
| CAAATCATCCAGGGAGAGCA+AGG | 0.531527 | 4.4:-34703323 | MS.gene28954:CDS |
| ATCTAGTAAGTCGTCGAGGA+AGG | 0.538754 | 4.4:-34703109 | MS.gene28954:CDS |
| TTGAACTGTATCTCCTAGAA+TGG | 0.541064 | 4.4:+34703881 | None:intergenic |
| AATGGATCATTCCGTTATGA+TGG | 0.543467 | 4.4:-34703581 | MS.gene28954:CDS |
| GGAATTGAACCAGCAGGTAC+CGG | 0.545624 | 4.4:+34703526 | None:intergenic |
| ACCTGCTAGAAAGACACAAA+AGG | 0.554651 | 4.4:-34704258 | MS.gene28954:CDS |
| GTATCCCCGCCTCTTCATCC+AGG | 0.556309 | 4.4:-34703385 | MS.gene28954:CDS |
| TATGTATCCATGGCCTGCAA+TGG | 0.558315 | 4.4:-34703599 | MS.gene28954:CDS |
| TAGTAGGGGTACGGCTGCAT+GGG | 0.560037 | 4.4:+34703505 | None:intergenic |
| ATAGTAGGGGTACGGCTGCA+TGG | 0.562866 | 4.4:+34703504 | None:intergenic |
| AACTAAGGACTATGTATCCA+TGG | 0.564461 | 4.4:-34703609 | MS.gene28954:CDS |
| CGGCTACCTGGATGAAGAGG+CGG | 0.573692 | 4.4:+34703379 | None:intergenic |
| ACCCAGGAGTCTTCAACTCA+AGG | 0.576772 | 4.4:+34703263 | None:intergenic |
| TAGTGTAGTGGGGAGCAGAA+AGG | 0.578575 | 4.4:-34703013 | MS.gene28954:CDS |
| TAGCTCATCAAGTAGTGTAG+TGG | 0.582065 | 4.4:-34703025 | MS.gene28954:CDS |
| TGATTAGCATAGTAGGGGTA+CGG | 0.592321 | 4.4:+34703496 | None:intergenic |
| AAGGGAACATATGTTGAACA+AGG | 0.603401 | 4.4:+34703451 | None:intergenic |
| GACCGGCTACCTGGATGAAG+AGG | 0.604106 | 4.4:+34703376 | None:intergenic |
| GGAACTGGATACGGATATGT+TGG | 0.606135 | 4.4:+34703553 | None:intergenic |
| AAGGAAACCAGTTTCACAGA+AGG | 0.607572 | 4.4:-34703090 | MS.gene28954:CDS |
| ACCTGATCTGCGGAAGACCC+AGG | 0.614780 | 4.4:+34703247 | None:intergenic |
| AGATACAGTTCAATTGCTGA+AGG | 0.616836 | 4.4:-34703871 | MS.gene28954:CDS |
| TGTTGGTGGAGCCATCATAA+CGG | 0.621484 | 4.4:+34703570 | None:intergenic |
| CAAGGGTTAGGGATGACTGC+AGG | 0.622814 | 4.4:+34703469 | None:intergenic |
| AGGCGGGGATACGTATTGAG+TGG | 0.624785 | 4.4:+34703396 | None:intergenic |
| GAGCAAGGCTCAAAGAAATG+AGG | 0.629493 | 4.4:-34703308 | MS.gene28954:CDS |
| CTGACCGAGAAAAGTTAAGG+AGG | 0.634700 | 4.4:-34704235 | MS.gene28954:CDS |
| AGCAGCACTAACCTGATCTG+CGG | 0.637188 | 4.4:+34703237 | None:intergenic |
| TGCATGGGAATTGAACCAGC+AGG | 0.642923 | 4.4:+34703520 | None:intergenic |
| TGACCGAGAAAAGTTAAGGA+GGG | 0.651662 | 4.4:-34704234 | MS.gene28954:CDS |
| GCTAAATGAAGAATCTCGTG+AGG | 0.654605 | 4.4:-34703805 | MS.gene28954:intron |
| ACTGGATACGGATATGTTGG+TGG | 0.657323 | 4.4:+34703556 | None:intergenic |
| AGTCTTCAACTCAAGGTCTG+TGG | 0.666361 | 4.4:+34703270 | None:intergenic |
| GATGTTGATTAGCATAGTAG+GGG | 0.671724 | 4.4:+34703491 | None:intergenic |
| GCTACCTGGATGAAGAGGCG+GGG | 0.673729 | 4.4:+34703381 | None:intergenic |
| AGGGAACATATGTTGAACAA+GGG | 0.680887 | 4.4:+34703452 | None:intergenic |
| GCTCATCAAGTAGTGTAGTG+GGG | 0.712201 | 4.4:-34703023 | MS.gene28954:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGTTGTTCAACAATTGTATT+CGG | + | chr4.4:34703853-34703872 | None:intergenic | 25.0% |
| !!! | ATTAAAGCTGTTTTTGTTGT+CGG | - | chr4.4:34704107-34704126 | MS.gene28954:intron | 25.0% |
| !!! | CTTACTAGATTTTTTTTGTG+CGG | + | chr4.4:34704152-34704171 | None:intergenic | 25.0% |
| AATTGTATTCGGAGCTAAAA+AGG | + | chr4.4:34703842-34703861 | None:intergenic | 30.0% | |
| ATTGTATTCGGAGCTAAAAA+GGG | + | chr4.4:34703841-34703860 | None:intergenic | 30.0% | |
| CGTGAGGTAATATTATATCT+CGG | - | chr4.4:34703482-34703501 | MS.gene28954:CDS | 30.0% | |
| CTAGAATTCATTCATGTGTT+AGG | - | chr4.4:34703255-34703274 | MS.gene28954:CDS | 30.0% | |
| GTTTACTAACTTGAGAAGTA+AGG | + | chr4.4:34703427-34703446 | None:intergenic | 30.0% | |
| !! | ATGGTCGCTTTATCATTTTT+AGG | + | chr4.4:34703374-34703393 | None:intergenic | 30.0% |
| !! | TATCATTTTTAGGCCTATCA+GGG | + | chr4.4:34703364-34703383 | None:intergenic | 30.0% |
| !! | TTATCATTTTTAGGCCTATC+AGG | + | chr4.4:34703365-34703384 | None:intergenic | 30.0% |
| !!! | AATGAACAGTTTTTAGAGCT+GGG | - | chr4.4:34703068-34703087 | MS.gene28954:CDS | 30.0% |
| AAAAATCTAGTAAGTCGTCG+AGG | - | chr4.4:34704158-34704177 | MS.gene28954:intron | 35.0% | |
| AACTAAGGACTATGTATCCA+TGG | - | chr4.4:34703662-34703681 | MS.gene28954:CDS | 35.0% | |
| AAGGGAACATATGTTGAACA+AGG | + | chr4.4:34703823-34703842 | None:intergenic | 35.0% | |
| AATGATAAAGCGACCATTCT+AGG | - | chr4.4:34703377-34703396 | MS.gene28954:CDS | 35.0% | |
| AATGGATCATTCCGTTATGA+TGG | - | chr4.4:34703690-34703709 | MS.gene28954:CDS | 35.0% | |
| ACATATGTTGAACAAGGGTT+AGG | + | chr4.4:34703817-34703836 | None:intergenic | 35.0% | |
| ACTCCAAAAACAAATCATCC+AGG | - | chr4.4:34703938-34703957 | MS.gene28954:intron | 35.0% | |
| AGATACAGTTCAATTGCTGA+AGG | - | chr4.4:34703400-34703419 | MS.gene28954:CDS | 35.0% | |
| AGGGAACATATGTTGAACAA+GGG | + | chr4.4:34703822-34703841 | None:intergenic | 35.0% | |
| CATATGTTGAACAAGGGTTA+GGG | + | chr4.4:34703816-34703835 | None:intergenic | 35.0% | |
| CTCCAAAAACAAATCATCCA+GGG | - | chr4.4:34703939-34703958 | MS.gene28954:intron | 35.0% | |
| TTGAACTGTATCTCCTAGAA+TGG | + | chr4.4:34703393-34703412 | None:intergenic | 35.0% | |
| ! | AGGATGTTGATTAGCATAGT+AGG | + | chr4.4:34703785-34703804 | None:intergenic | 35.0% |
| ! | GATGTTGATTAGCATAGTAG+GGG | + | chr4.4:34703783-34703802 | None:intergenic | 35.0% |
| ! | GGATGTTGATTAGCATAGTA+GGG | + | chr4.4:34703784-34703803 | None:intergenic | 35.0% |
| ! | TCTGGGACATAAATTTACAG+AGG | - | chr4.4:34703527-34703546 | MS.gene28954:CDS | 35.0% |
| ! | TTAGAGCTGGGTAACATTTT+AGG | - | chr4.4:34703080-34703099 | MS.gene28954:CDS | 35.0% |
| ! | TTTTCAACTACATGTTGCGA+AGG | - | chr4.4:34703183-34703202 | MS.gene28954:intron | 35.0% |
| !! | TTTTTGTTGTCGGATTTTGC+AGG | - | chr4.4:34704117-34704136 | MS.gene28954:intron | 35.0% |
| !!! | CAATGAACAGTTTTTAGAGC+TGG | - | chr4.4:34703067-34703086 | MS.gene28954:CDS | 35.0% |
| !!! | GTTAGTGCTGCTTTTTTCTT+GGG | - | chr4.4:34704045-34704064 | MS.gene28954:intron | 35.0% |
| AAGGAAACCAGTTTCACAGA+AGG | - | chr4.4:34704181-34704200 | MS.gene28954:intron | 40.0% | |
| ACCTATAGATGCAGTAGAAG+AGG | - | chr4.4:34704078-34704097 | MS.gene28954:intron | 40.0% | |
| ACCTCTTCTACTGCATCTAT+AGG | + | chr4.4:34704082-34704101 | None:intergenic | 40.0% | |
| ACCTGCTAGAAAGACACAAA+AGG | - | chr4.4:34703013-34703032 | MS.gene28954:CDS | 40.0% | |
| AGAGCACAGAGTAATTCAAG+AGG | + | chr4.4:34703320-34703339 | None:intergenic | 40.0% | |
| AGCTCATCAAGTAGTGTAGT+GGG | - | chr4.4:34704247-34704266 | MS.gene28954:CDS | 40.0% | |
| ATGAATCACCTTGATGCTTC+TGG | - | chr4.4:34703509-34703528 | MS.gene28954:CDS | 40.0% | |
| GCTAAATGAAGAATCTCGTG+AGG | - | chr4.4:34703466-34703485 | MS.gene28954:CDS | 40.0% | |
| GTTCAATTTCCAGTTGTCTC+AGG | - | chr4.4:34703564-34703583 | MS.gene28954:CDS | 40.0% | |
| TAGCTCATCAAGTAGTGTAG+TGG | - | chr4.4:34704246-34704265 | MS.gene28954:CDS | 40.0% | |
| TGAATCACCTTGATGCTTCT+GGG | - | chr4.4:34703510-34703529 | MS.gene28954:CDS | 40.0% | |
| TGACCGAGAAAAGTTAAGGA+GGG | - | chr4.4:34703037-34703056 | MS.gene28954:CDS | 40.0% | |
| TGATTAGCATAGTAGGGGTA+CGG | + | chr4.4:34703778-34703797 | None:intergenic | 40.0% | |
| TTCACAGAAGGTAGTTCGTT+AGG | - | chr4.4:34704193-34704212 | MS.gene28954:CDS | 40.0% | |
| TTCTTCATCTCACAGTGTTC+AGG | - | chr4.4:34704222-34704241 | MS.gene28954:CDS | 40.0% | |
| TTGAATTACTCTGTGCTCTG+TGG | - | chr4.4:34703321-34703340 | MS.gene28954:CDS | 40.0% | |
| ! | ATAACGGAATGATCCATTGC+AGG | + | chr4.4:34703688-34703707 | None:intergenic | 40.0% |
| ! | CATTTTTCTCCTGAGACAAC+TGG | + | chr4.4:34703576-34703595 | None:intergenic | 40.0% |
| ! | GATCCCTCCTTAACTTTTCT+CGG | + | chr4.4:34703043-34703062 | None:intergenic | 40.0% |
| !! | TTTATGTCCCAGAAGCATCA+AGG | + | chr4.4:34703520-34703539 | None:intergenic | 40.0% |
| !!! | AGTCTTGTTTTCCTGATACG+TGG | + | chr4.4:34703921-34703940 | None:intergenic | 40.0% |
| !!! | CTCCCTGGATGATTTGTTTT+TGG | + | chr4.4:34703944-34703963 | None:intergenic | 40.0% |
| !!! | GGTTAGTGCTGCTTTTTTCT+TGG | - | chr4.4:34704044-34704063 | MS.gene28954:intron | 40.0% |
| !!! | GTCTTGTTTTCCTGATACGT+GGG | + | chr4.4:34703920-34703939 | None:intergenic | 40.0% |
| ACCAGTATCAGCTGCAACTA+AGG | - | chr4.4:34703647-34703666 | MS.gene28954:CDS | 45.0% | |
| ACTGGATACGGATATGTTGG+TGG | + | chr4.4:34703718-34703737 | None:intergenic | 45.0% | |
| AGGCTGACCGAGAAAAGTTA+AGG | - | chr4.4:34703033-34703052 | MS.gene28954:CDS | 45.0% | |
| AGTCTTCAACTCAAGGTCTG+TGG | + | chr4.4:34704004-34704023 | None:intergenic | 45.0% | |
| ATCTAGTAAGTCGTCGAGGA+AGG | - | chr4.4:34704162-34704181 | MS.gene28954:intron | 45.0% | |
| CAAAATGTGAGCAGAGTCAC+TGG | - | chr4.4:34703138-34703157 | MS.gene28954:intron | 45.0% | |
| CGAACTACCTTCTGTGAAAC+TGG | + | chr4.4:34704191-34704210 | None:intergenic | 45.0% | |
| CTGACCGAGAAAAGTTAAGG+AGG | - | chr4.4:34703036-34703055 | MS.gene28954:CDS | 45.0% | |
| GAGCAAGGCTCAAAGAAATG+AGG | - | chr4.4:34703963-34703982 | MS.gene28954:intron | 45.0% | |
| GCTCATCAAGTAGTGTAGTG+GGG | - | chr4.4:34704248-34704267 | MS.gene28954:CDS | 45.0% | |
| GGAACTGGATACGGATATGT+TGG | + | chr4.4:34703721-34703740 | None:intergenic | 45.0% | |
| TATGTATCCATGGCCTGCAA+TGG | - | chr4.4:34703672-34703691 | MS.gene28954:CDS | 45.0% | |
| TCCTTAGTTGCAGCTGATAC+TGG | + | chr4.4:34703651-34703670 | None:intergenic | 45.0% | |
| ! | TCTGAAATGCAGACCCTGAT+AGG | - | chr4.4:34703348-34703367 | MS.gene28954:CDS | 45.0% |
| ! | TGTTGGTGGAGCCATCATAA+CGG | + | chr4.4:34703704-34703723 | None:intergenic | 45.0% |
| !! | ACCTTGAGTTGAAGACTCCT+GGG | - | chr4.4:34704007-34704026 | MS.gene28954:intron | 45.0% |
| !! | GCCTTTTGTGTCTTTCTAGC+AGG | + | chr4.4:34703017-34703036 | None:intergenic | 45.0% |
| ACCCAGGAGTCTTCAACTCA+AGG | + | chr4.4:34704011-34704030 | None:intergenic | 50.0% | |
| AGCAGCACTAACCTGATCTG+CGG | + | chr4.4:34704037-34704056 | None:intergenic | 50.0% | |
| CAAATCATCCAGGGAGAGCA+AGG | - | chr4.4:34703948-34703967 | MS.gene28954:intron | 50.0% | |
| GAATGATCCATTGCAGGCCA+TGG | + | chr4.4:34703682-34703701 | None:intergenic | 50.0% | |
| GGAATTGAACCAGCAGGTAC+CGG | + | chr4.4:34703748-34703767 | None:intergenic | 50.0% | |
| TCCGTATCCAGTTCCAATGC+CGG | - | chr4.4:34703726-34703745 | MS.gene28954:intron | 50.0% | |
| TGCATGGGAATTGAACCAGC+AGG | + | chr4.4:34703754-34703773 | None:intergenic | 50.0% | |
| ! | ACCGGCATTGGAACTGGATA+CGG | + | chr4.4:34703730-34703749 | None:intergenic | 50.0% |
| ! | GTTTTCCTGATACGTGGGAC+CGG | + | chr4.4:34703915-34703934 | None:intergenic | 50.0% |
| ! | TAGTGTAGTGGGGAGCAGAA+AGG | - | chr4.4:34704258-34704277 | MS.gene28954:CDS | 50.0% |
| !! | GACCTTGAGTTGAAGACTCC+TGG | - | chr4.4:34704006-34704025 | MS.gene28954:intron | 50.0% |
| AGGCGGGGATACGTATTGAG+TGG | + | chr4.4:34703878-34703897 | None:intergenic | 55.0% | |
| CAAGGGTTAGGGATGACTGC+AGG | + | chr4.4:34703805-34703824 | None:intergenic | 55.0% | |
| TCTTTGAGCCTTGCTCTCCC+TGG | + | chr4.4:34703959-34703978 | None:intergenic | 55.0% | |
| ! | ATAGTAGGGGTACGGCTGCA+TGG | + | chr4.4:34703770-34703789 | None:intergenic | 55.0% |
| ! | TAGTAGGGGTACGGCTGCAT+GGG | + | chr4.4:34703769-34703788 | None:intergenic | 55.0% |
| ACCTGATCTGCGGAAGACCC+AGG | + | chr4.4:34704027-34704046 | None:intergenic | 60.0% | |
| CGCCTCTTCATCCAGGTAGC+CGG | - | chr4.4:34703893-34703912 | MS.gene28954:CDS | 60.0% | |
| CGGCTACCTGGATGAAGAGG+CGG | + | chr4.4:34703895-34703914 | None:intergenic | 60.0% | |
| GACCGGCTACCTGGATGAAG+AGG | + | chr4.4:34703898-34703917 | None:intergenic | 60.0% | |
| GCTACCTGGATGAAGAGGCG+GGG | + | chr4.4:34703893-34703912 | None:intergenic | 60.0% | |
| GGCTACCTGGATGAAGAGGC+GGG | + | chr4.4:34703894-34703913 | None:intergenic | 60.0% | |
| GTATCCCCGCCTCTTCATCC+AGG | - | chr4.4:34703886-34703905 | MS.gene28954:CDS | 60.0% | |
| GTTCCAATGCCGGTACCTGC+TGG | - | chr4.4:34703736-34703755 | MS.gene28954:intron | 60.0% | |
| TCCTGGGTCTTCCGCAGATC+AGG | - | chr4.4:34704023-34704042 | MS.gene28954:intron | 60.0% | |
| !! | GAACCAGCAGGTACCGGCAT+TGG | + | chr4.4:34703742-34703761 | None:intergenic | 60.0% |
| !! | GCAGGTACCGGCATTGGAAC+TGG | + | chr4.4:34703736-34703755 | None:intergenic | 60.0% |
| GATACGTGGGACCGGCTACC+TGG | + | chr4.4:34703907-34703926 | None:intergenic | 65.0% | |
| GGTAGCCGGTCCCACGTATC+AGG | - | chr4.4:34703907-34703926 | MS.gene28954:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34703002 | 34704291 | 34703002 | ID=MS.gene28954 |
| chr4.4 | mRNA | 34703002 | 34704291 | 34703002 | ID=MS.gene28954.t1;Parent=MS.gene28954 |
| chr4.4 | exon | 34704192 | 34704291 | 34704192 | ID=MS.gene28954.t1.exon1;Parent=MS.gene28954.t1 |
| chr4.4 | CDS | 34704192 | 34704291 | 34704192 | ID=cds.MS.gene28954.t1;Parent=MS.gene28954.t1 |
| chr4.4 | exon | 34703806 | 34703933 | 34703806 | ID=MS.gene28954.t1.exon2;Parent=MS.gene28954.t1 |
| chr4.4 | CDS | 34703806 | 34703933 | 34703806 | ID=cds.MS.gene28954.t1;Parent=MS.gene28954.t1 |
| chr4.4 | exon | 34703249 | 34703716 | 34703249 | ID=MS.gene28954.t1.exon3;Parent=MS.gene28954.t1 |
| chr4.4 | CDS | 34703249 | 34703716 | 34703249 | ID=cds.MS.gene28954.t1;Parent=MS.gene28954.t1 |
| chr4.4 | exon | 34703002 | 34703154 | 34703002 | ID=MS.gene28954.t1.exon4;Parent=MS.gene28954.t1 |
| chr4.4 | CDS | 34703002 | 34703154 | 34703002 | ID=cds.MS.gene28954.t1;Parent=MS.gene28954.t1 |
| Gene Sequence |
| Protein sequence |
