AlfalfaGEDB | MS.gene29116

M. sativa cultivar XinJiangDaYe / MS.gene29116

KEGG: K14431
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24 PF14144.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29116.t1	XP_024633716.1	94.4	356	9	1	1	345	1	356	1.70E-181	645.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29116.t1	Q39234	49.2	364	153	3	1	334	19	380	7.5e-93	342.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29116.t1	A0A396IW27	93.9	358	9	2	1	345	1	358	4.0e-180	640.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene29116.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29116.t1	MTR_3g073560	94.828	348	7	1	1	337	1	348	0.0	674
MS.gene29116.t1	MTR_5g060950	64.655	348	108	4	1	333	1	348	4.59e-154	437
MS.gene29116.t1	MTR_3g087940	49.425	348	160	3	1	334	14	359	7.07e-116	340
MS.gene29116.t1	MTR_8g091650	46.532	346	167	5	1	334	15	354	4.63e-98	295
MS.gene29116.t1	MTR_7g089800	47.112	329	162	3	13	334	98	421	1.91e-96	293
MS.gene29116.t1	MTR_7g089800	47.112	329	162	3	13	334	127	450	4.23e-96	293
MS.gene29116.t1	MTR_8g040120	50.000	302	140	2	42	336	169	466	2.20e-95	291
MS.gene29116.t1	MTR_8g091650	50.719	278	136	1	57	334	5	281	1.53e-92	278
MS.gene29116.t1	MTR_8g091650	41.910	377	175	4	1	334	15	390	8.87e-92	280
MS.gene29116.t1	MTR_2g086420	49.477	287	138	3	54	340	194	473	2.60e-87	271

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29116.t1	AT1G22070	48.895	362	157	2	1	334	19	380	1.42e-123	360
MS.gene29116.t1	AT1G77920	49.861	361	142	6	1	334	16	364	2.08e-117	344
MS.gene29116.t1	AT5G10030	48.696	345	164	3	1	332	14	358	9.85e-112	330
MS.gene29116.t1	AT5G10030	48.696	345	164	3	1	332	14	358	9.85e-112	330
MS.gene29116.t1	AT5G10030	48.696	345	164	3	1	332	14	358	9.85e-112	330
MS.gene29116.t1	AT5G10030	48.696	345	164	3	1	332	14	358	9.85e-112	330
MS.gene29116.t1	AT5G10030	48.696	345	164	3	1	332	14	358	9.85e-112	330
MS.gene29116.t1	AT5G65210	47.278	349	163	2	3	332	16	362	1.90e-110	327
MS.gene29116.t1	AT5G65210	47.278	349	163	2	3	332	16	362	1.90e-110	327
MS.gene29116.t1	AT5G65210	47.278	349	163	2	3	332	16	362	1.90e-110	327

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Find 82 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAACTCCAGGAGAGTC+TGG	0.422863	3.4:-72203710	MS.gene29116:CDS
AACATTTGTTCATCAGACAA+AGG	0.607845	3.4:+72203793	None:intergenic
AACCAGACGAAGCTGCACTT+CGG	0.601003	3.4:+72204090	None:intergenic
AATATATTCCTCATGAACCA+AGG	0.603855	3.4:-72204990	MS.gene29116:CDS
AATGAAAACGGATGCTGCAA+AGG	0.533573	3.4:-72204029	MS.gene29116:CDS
ACAAGAGACTACAAACAATA+AGG	0.391876	3.4:-72204950	MS.gene29116:intron
ACAAGGACTAAATAAACTCC+AGG	0.589120	3.4:-72203719	MS.gene29116:CDS
ACACACCGGAGATTAAATAG+AGG	0.563190	3.4:+72203999	None:intergenic
ACACCGGAGATTAAATAGAG+GGG	0.728769	3.4:+72204001	None:intergenic
ACGCCTCTCACAGAATCGAG+AGG	0.691290	3.4:-72204805	MS.gene29116:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTTGTTCATCAGACAA+AGG	+	chr3.4:72204685-72204704	None:intergenic	30.0%
AATATATTCCTCATGAACCA+AGG	-	chr3.4:72203485-72203504	MS.gene29116:intron	30.0%
ACAAGAGACTACAAACAATA+AGG	-	chr3.4:72203525-72203544	MS.gene29116:intron	30.0%
ATATATTCCTCATGAACCAA+GGG	-	chr3.4:72203486-72203505	MS.gene29116:intron	30.0%
ATATCAAGAATCACAAACCT+GGG	+	chr3.4:72204213-72204232	None:intergenic	30.0%
CCAAGAAATTTGAATCAACT+AGG	-	chr3.4:72204900-72204919	MS.gene29116:intron	30.0%
GTACATTTAGAAGTTGTGAT+GGG	+	chr3.4:72204548-72204567	None:intergenic	30.0%
TAATGATTAGTGATTCGTTG+AGG	+	chr3.4:72204619-72204638	None:intergenic	30.0%
TGTACATTTAGAAGTTGTGA+TGG	+	chr3.4:72204549-72204568	None:intergenic	30.0%
TTACTGTTCACTAGTAACAT+TGG	+	chr3.4:72203313-72203332	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	72203226	72205271	72203226	ID=MS.gene29116
chr3.4	mRNA	72203226	72205271	72203226	ID=MS.gene29116.t1;Parent=MS.gene29116
chr3.4	exon	72205176	72205271	72205176	ID=MS.gene29116.t1.exon1;Parent=MS.gene29116.t1
chr3.4	CDS	72205176	72205271	72205176	ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4	exon	72204951	72205016	72204951	ID=MS.gene29116.t1.exon2;Parent=MS.gene29116.t1
chr3.4	CDS	72204951	72205016	72204951	ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4	exon	72204776	72204835	72204776	ID=MS.gene29116.t1.exon3;Parent=MS.gene29116.t1
chr3.4	CDS	72204776	72204835	72204776	ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4	exon	72204459	72204536	72204459	ID=MS.gene29116.t1.exon4;Parent=MS.gene29116.t1
chr3.4	CDS	72204459	72204536	72204459	ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4	exon	72204283	72204346	72204283	ID=MS.gene29116.t1.exon5;Parent=MS.gene29116.t1
chr3.4	CDS	72204283	72204346	72204283	ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4	exon	72203934	72204205	72203934	ID=MS.gene29116.t1.exon6;Parent=MS.gene29116.t1
chr3.4	CDS	72203934	72204205	72203934	ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4	exon	72203609	72203836	72203609	ID=MS.gene29116.t1.exon7;Parent=MS.gene29116.t1
chr3.4	CDS	72203609	72203836	72203609	ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4	exon	72203226	72203399	72203226	ID=MS.gene29116.t1.exon8;Parent=MS.gene29116.t1
chr3.4	CDS	72203226	72203399	72203226	ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1

Gene Sequence

>MS.gene29116

ATGGATATATACGAGCCATTCCAGCAAGTTAGCATGTGGGGTGACAGCTTTAAAGTTGAAGGTGGTCTTAATTCAATTGCTTCTCCAATGTTACTAGTGAACAGTAACACTACTAGCATGGAGAACAAGGTGAGTTATTATAACTAATAATTTGATTTTATTTATTTATTATTGTTACTTTTATGATTATAGAGTCTGACTCATTTAATGTGGAAACTAGATTATATAACAATCTTATGAATTTGAATTTTGCAGTCTGAATATATTCCTCATGAACCAAGGGATCATTCAGAAGCTGAACAAGAGACTACAAACAATAAGGTAATGAAATTTGATCAAGACATAAATTGTGACATTTTGATTTTTGTCCAAAAATGTTTTGTGATAAAACATGGAAGTTTTTGAGTTGTTTATGTGTCTGTGACATTATGTGTAGGTACTTAGACGCCTCTCACAGAATCGAGAGGCTGCTAAGAAAAGCCGGGAGCGCAAAAAGGTAATATAATTTACTTATAGGAAAAGTCATTTGATTTGTTCCTTTGTTGTGTAAAACGGTTGAGGAAATGAAAATTGAGGTTTTTATCCCATTCAACTCAATAGAACAGTTTATAAAGATGTAAGCAGTTATAACTGACTAACAAACATATTTCCAACTAACTAACTAACTAACTAACTTAGTTCTAACTAGCTTTTAACTAATCCACAAATATGAAACATATGCTTGATATTGTGCAGGCTTATGTTAAACAATTAGAATCAAGCAGATTGAAGCTCATGCAATTGGAGCTGGAGATTGGGAGAGCAAGAAAGCAGGTGAACCAAAACTAACAATTTATTTACCATCTTCACTTCTGATTTATATTTATGTTATGCTCTTTCAATTGTAAATTTTAAGCATATATTAAAATTTCTACTTTAGTTGCAGGGTATTTGCACAGGAAGCGCCTTAGATACCAGTTTTATGGGATCATCTGAAACAATTAACCCAGGTTTGTGATTCTTGATATCAATTGTAAGCATTCTTAATATCTTTTATTCTTATTGATCTTTGTGTTCTGTTAACCAGGGATTGTTGCGTTTGAAATTGAATATGGAAATTGGGTTGACGAGAACCATAGGCGGAACGAAGAGCTCAGAAATGCATTTCAAACTAATGCGTCCGAAGTGCAGCTTCGTCTGGTTGTTCAGAGTGTCTTGAATCATTACTCGGATCTTTTCAGAATGAAAACGGATGCTGCAAAGGCTGATCCCCTCTATTTAATCTCCGGTGTGTGGAAACCATCCGTAGAGCGCCTTTTCCTATGGATCGGAGGATCTCGCCCATCACAACTTCTAAATGTACAAATCTGATCTTAATAGCGAATTAGATTAAAAATTGGTACTGTCGAATCCTCAACGAATCACTAATCATTATTAGATTTTTTTCCTCCTACAGCTCATTGTGCCACAACTTGAGCCTTTGTCTGATGAACAAATGTTGAGCATTAAAAAACTTCATCTGTCGTCTCAGCAAGCCGAAGATGCTCTTTCACAAGGACTAAATAAACTCCAGGAGAGTCTGGTCCAAGACATGGCATTTGTTCCATTAAATGCAGCAAATCATGGAATTCAGATGGCTATTGCTATAGACAAATTTGAGGGACTCGAAGGTTTTGTAATCCAGGTAATGTAACACCAAGAAATTTGAATCAACTAGGAATTTTCTAATGCAACTCTTTTATTCTAAGTCCTGATGTTCAAATTATAACTAGACCCTTCCTCATTATTTTGGGATGACAGTTCATATATTATGAATTAGTATTTCTTTATGCTCCATATTCATCATTACATTGTTCAATTTGATAAATTGTGAATGGTTTGTGTTGTCGACAGGCAGATCATCTCAGGCAGCAAACTCTGATACACATGTCCCGCATCCTGTCTACACACCAAGGTGCTAGGGGCTTGATTGCTCTTGGGGAATACTTTCATCGTCTTCGTACTATTTGTTCTCTATGGACTTCTTGTCCATTCGATTCCAAGATATCACCTAGGATTACTCCTTAG

Protein sequence

>MS.gene29116.t1

MDIYEPFQQVSMWGDSFKVEGGLNSIASPMLLSEYIPHEPRDHSEAEQETTNNKVLRRLSQNREAAKKSRERKKAYVKQLESSRLKLMQLELEIGRARKQGICTGSALDTSFMGSSETINPGIVAFEIEYGNWVDENHRRNEELRNAFQTNASEVQLRLVVQSVLNHYSDLFRMKTDAAKADPLYLISGVWKPSVERLFLWIGGSRPSQLLNLIVPQLEPLSDEQMLSIKKLHLSSQQAEDALSQGLNKLQESLVQDMAFVPLNAANHGIQMAIAIDKFEGLEGFVIQADHLRQQTLIHMSRILSTHQGARGLIALGEYFHRLRTICSLWTSCPFDSKISPRITP