AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29116

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29116.t1 MTR_3g073560 94.828 348 7 1 1 337 1 348 0.0 674
MS.gene29116.t1 MTR_5g060950 64.655 348 108 4 1 333 1 348 4.59e-154 437
MS.gene29116.t1 MTR_3g087940 49.425 348 160 3 1 334 14 359 7.07e-116 340
MS.gene29116.t1 MTR_8g091650 46.532 346 167 5 1 334 15 354 4.63e-98 295
MS.gene29116.t1 MTR_7g089800 47.112 329 162 3 13 334 98 421 1.91e-96 293
MS.gene29116.t1 MTR_7g089800 47.112 329 162 3 13 334 127 450 4.23e-96 293
MS.gene29116.t1 MTR_8g040120 50.000 302 140 2 42 336 169 466 2.20e-95 291
MS.gene29116.t1 MTR_8g091650 50.719 278 136 1 57 334 5 281 1.53e-92 278
MS.gene29116.t1 MTR_8g091650 41.910 377 175 4 1 334 15 390 8.87e-92 280
MS.gene29116.t1 MTR_2g086420 49.477 287 138 3 54 340 194 473 2.60e-87 271
MS.gene29116.t1 MTR_2g086420 49.477 287 138 3 54 340 193 472 2.85e-87 271
MS.gene29116.t1 MTR_7g092750 45.215 303 158 3 40 334 58 360 2.06e-83 257
MS.gene29116.t1 MTR_7g092750 45.215 303 158 3 40 334 159 461 2.51e-82 258
MS.gene29116.t1 MTR_4g053250 46.075 293 148 2 48 340 183 465 3.37e-81 255
MS.gene29116.t1 MTR_5g054900 43.793 290 152 2 52 334 66 351 3.47e-80 248
MS.gene29116.t1 MTR_5g054900 43.793 290 152 2 52 334 147 432 3.84e-79 248
MS.gene29116.t1 MTR_1g111310 43.564 303 161 4 39 334 406 705 4.63e-77 250
MS.gene29116.t1 MTR_1g111310 42.034 295 161 2 39 330 39 326 1.27e-68 228
MS.gene29116.t1 MTR_5g054900 43.103 290 150 3 52 334 66 347 2.01e-76 239
MS.gene29116.t1 MTR_5g054900 43.103 290 150 3 52 334 177 458 6.99e-75 238
MS.gene29116.t1 MTR_7g092750 41.254 303 144 4 40 334 159 435 7.00e-68 219
MS.gene29116.t1 MTR_0126s0080 46.988 249 124 2 49 289 211 459 2.19e-65 214
MS.gene29116.t1 MTR_3g044820 42.308 182 96 3 39 212 30 210 6.56e-43 148
MS.gene29116.t1 MTR_1g090370 35.329 167 89 5 156 321 72 220 1.90e-17 80.5
MS.gene29116.t1 MTR_1g111320 55.556 63 28 0 39 101 131 193 2.33e-14 71.6
MS.gene29116.t1 MTR_2g076140 28.571 196 104 5 143 318 23 202 1.08e-13 69.7
MS.gene29116.t1 MTR_7g068860 29.050 179 111 4 160 326 45 219 1.94e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29116.t1 AT1G22070 48.895 362 157 2 1 334 19 380 1.42e-123 360
MS.gene29116.t1 AT1G77920 49.861 361 142 6 1 334 16 364 2.08e-117 344
MS.gene29116.t1 AT5G10030 48.696 345 164 3 1 332 14 358 9.85e-112 330
MS.gene29116.t1 AT5G10030 48.696 345 164 3 1 332 14 358 9.85e-112 330
MS.gene29116.t1 AT5G10030 48.696 345 164 3 1 332 14 358 9.85e-112 330
MS.gene29116.t1 AT5G10030 48.696 345 164 3 1 332 14 358 9.85e-112 330
MS.gene29116.t1 AT5G10030 48.696 345 164 3 1 332 14 358 9.85e-112 330
MS.gene29116.t1 AT5G65210 47.278 349 163 2 3 332 16 362 1.90e-110 327
MS.gene29116.t1 AT5G65210 47.278 349 163 2 3 332 16 362 1.90e-110 327
MS.gene29116.t1 AT5G65210 47.278 349 163 2 3 332 16 362 1.90e-110 327
MS.gene29116.t1 AT5G65210 47.278 349 163 2 3 332 16 362 1.90e-110 327
MS.gene29116.t1 AT5G65210 47.278 349 163 2 3 332 16 362 1.90e-110 327
MS.gene29116.t1 AT5G65210 47.278 349 163 2 3 332 16 362 1.90e-110 327
MS.gene29116.t1 AT5G65210 52.778 288 136 0 45 332 5 292 5.18e-106 313
MS.gene29116.t1 AT3G12250 47.826 299 146 2 42 334 7 301 6.88e-91 274
MS.gene29116.t1 AT3G12250 47.826 299 146 2 42 334 34 328 1.33e-90 275
MS.gene29116.t1 AT3G12250 47.826 299 146 2 42 334 34 328 1.33e-90 275
MS.gene29116.t1 AT3G12250 47.826 299 146 2 42 334 34 328 1.33e-90 275
MS.gene29116.t1 AT3G12250 47.826 299 146 2 42 334 34 328 1.33e-90 275
MS.gene29116.t1 AT5G06950 47.492 299 147 2 42 334 34 328 1.55e-90 274
MS.gene29116.t1 AT5G06950 47.492 299 147 2 42 334 34 328 1.55e-90 274
MS.gene29116.t1 AT5G06950 47.492 299 147 2 42 334 34 328 1.55e-90 274
MS.gene29116.t1 AT5G06950 47.492 299 147 2 42 334 34 328 1.55e-90 274
MS.gene29116.t1 AT5G06950 47.492 299 147 2 42 334 34 328 1.55e-90 274
MS.gene29116.t1 AT3G12250 47.826 299 146 2 42 334 28 322 2.06e-90 274
MS.gene29116.t1 AT3G12250 47.826 299 146 2 42 334 59 353 5.69e-90 274
MS.gene29116.t1 AT5G06960 49.135 289 137 2 52 334 24 308 1.53e-89 271
MS.gene29116.t1 AT5G06960 49.135 289 137 2 52 334 44 328 2.09e-89 271
MS.gene29116.t1 AT5G06960 49.135 289 137 2 52 334 44 328 2.09e-89 271
MS.gene29116.t1 AT1G08320 45.130 308 154 3 37 340 37 333 2.06e-87 267
MS.gene29116.t1 AT1G08320 45.130 308 154 3 37 340 37 333 2.06e-87 267
MS.gene29116.t1 AT1G08320 45.130 308 154 3 37 340 161 457 2.60e-85 266
MS.gene29116.t1 AT1G08320 45.130 308 154 3 37 340 161 457 2.60e-85 266
MS.gene29116.t1 AT1G08320 45.130 308 154 3 37 340 161 457 2.60e-85 266
MS.gene29116.t1 AT5G06839 42.535 355 165 7 1 334 120 456 3.28e-81 254
MS.gene29116.t1 AT5G06839 45.574 305 143 4 49 334 113 413 3.88e-81 253
MS.gene29116.t1 AT5G06839 45.425 306 143 4 49 334 113 414 5.11e-81 253
MS.gene29116.t1 AT1G68640 42.905 296 157 3 49 336 161 452 4.70e-74 236
MS.gene29116.t1 AT3G14880 23.077 234 141 5 122 330 6 225 2.50e-11 63.5
MS.gene29116.t1 AT1G58330 26.816 179 118 4 160 326 46 223 2.93e-11 63.2

Find 82 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATTTGCTGCATTTAA+TGG 0.080172 3.4:+72203667 None:intergenic
TTGAAATTGAATATGGAAAT+TGG 0.124001 3.4:-72204171 MS.gene29116:CDS
GTTGCGTTTGAAATTGAATA+TGG 0.262300 3.4:-72204178 MS.gene29116:CDS
TTCGTACTATTTGTTCTCTA+TGG 0.263825 3.4:-72203274 MS.gene29116:CDS
CTAGGGGCTTGATTGCTCTT+GGG 0.281037 3.4:-72203313 MS.gene29116:CDS
TCCCATAAAACTGGTATCTA+AGG 0.348603 3.4:+72204305 None:intergenic
CACCCCACATGCTAACTTGC+TGG 0.350263 3.4:+72205229 None:intergenic
GCTAGGGGCTTGATTGCTCT+TGG 0.359255 3.4:-72203314 MS.gene29116:CDS
CACCTAGGATTACTCCTTAG+AGG 0.368350 3.4:-72203223 None:intergenic
GAAAAGCCGGGAGCGCAAAA+AGG 0.370740 3.4:-72204775 MS.gene29116:intron
ATGCAATTGGAGCTGGAGAT+TGG 0.373155 3.4:-72204475 MS.gene29116:CDS
ACAAGAGACTACAAACAATA+AGG 0.391876 3.4:-72204950 MS.gene29116:intron
TTCAGATGATCCCATAAAAC+TGG 0.394744 3.4:+72204296 None:intergenic
TCCTTGTGAAAGAGCATCTT+CGG 0.402772 3.4:+72203735 None:intergenic
CAGATTGAAGCTCATGCAAT+TGG 0.405773 3.4:-72204488 MS.gene29116:CDS
TGAAATTGAATATGGAAATT+GGG 0.412016 3.4:-72204170 MS.gene29116:CDS
AAATAAACTCCAGGAGAGTC+TGG 0.422863 3.4:-72203710 MS.gene29116:CDS
TGAGCTCTTCGTTCCGCCTA+TGG 0.423220 3.4:+72204137 None:intergenic
TGCAATTGGAGCTGGAGATT+GGG 0.428890 3.4:-72204474 MS.gene29116:CDS
TCAGCTTCTGAATGATCCCT+TGG 0.431043 3.4:+72204973 None:intergenic
AGTAATCCTAGGTGATATCT+TGG 0.431819 3.4:+72203232 None:intergenic
GTCCGAAGTGCAGCTTCGTC+TGG 0.433393 3.4:-72204092 MS.gene29116:CDS
ATGGAACAAATGCCATGTCT+TGG 0.464262 3.4:+72203686 None:intergenic
GGTGACAGCTTTAAAGTTGA+AGG 0.469579 3.4:-72205210 MS.gene29116:CDS
CCATTAAATGCAGCAAATCA+TGG 0.469880 3.4:-72203667 MS.gene29116:CDS
GTCGACAGGCAGATCATCTC+AGG 0.470981 3.4:-72203385 MS.gene29116:intron
GTCTACACACCAAGGTGCTA+GGG 0.472353 3.4:-72203330 MS.gene29116:CDS
TAGGGGCTTGATTGCTCTTG+GGG 0.473739 3.4:-72203312 MS.gene29116:CDS
TGTCTTGGACCAGACTCTCC+TGG 0.474340 3.4:+72203701 None:intergenic
CACATGCTAACTTGCTGGAA+TGG 0.476844 3.4:+72205234 None:intergenic
TAGCACCTTGGTGTGTAGAC+AGG 0.499406 3.4:+72203333 None:intergenic
ATCCTCCGATCCATAGGAAA+AGG 0.500037 3.4:+72203957 None:intergenic
TGTCTACACACCAAGGTGCT+AGG 0.507663 3.4:-72203331 MS.gene29116:CDS
CCATAGGAAAAGGCGCTCTA+CGG 0.507714 3.4:+72203967 None:intergenic
GATTGGGAGAGCAAGAAAGC+AGG 0.518438 3.4:-72204458 MS.gene29116:intron
TATTGCTATAGACAAATTTG+AGG 0.520557 3.4:-72203632 MS.gene29116:CDS
TAGTTGCAGGGTATTTGCAC+AGG 0.526630 3.4:-72204333 MS.gene29116:intron
TGTACATTTAGAAGTTGTGA+TGG 0.532177 3.4:+72203929 None:intergenic
GAAGCTCATGCAATTGGAGC+TGG 0.532336 3.4:-72204482 MS.gene29116:CDS
GAGAGGCTGCTAAGAAAAGC+CGG 0.533392 3.4:-72204788 MS.gene29116:CDS
AATGAAAACGGATGCTGCAA+AGG 0.533573 3.4:-72204029 MS.gene29116:CDS
GATCCCCTCTATTTAATCTC+CGG 0.535169 3.4:-72204004 MS.gene29116:CDS
TTCCTCTAAGGAGTAATCCT+AGG 0.546737 3.4:+72203221 None:intergenic
TTACTGTTCACTAGTAACAT+TGG 0.550321 3.4:+72205165 None:intergenic
ATTGCTATAGACAAATTTGA+GGG 0.550505 3.4:-72203631 MS.gene29116:CDS
CAGCCTCTCGATTCTGTGAG+AGG 0.550635 3.4:+72204802 None:intergenic
GACAAATTTGAGGGACTCGA+AGG 0.552796 3.4:-72203622 MS.gene29116:CDS
GTACATTTAGAAGTTGTGAT+GGG 0.555666 3.4:+72203930 None:intergenic
ACACACCGGAGATTAAATAG+AGG 0.563190 3.4:+72203999 None:intergenic
ATTGGGTTGACGAGAACCAT+AGG 0.567572 3.4:-72204153 MS.gene29116:CDS
GGTGATATCTTGGAATCGAA+TGG 0.569812 3.4:+72203242 None:intergenic
CTTGGTGTGTAGACAGGATG+CGG 0.573164 3.4:+72203339 None:intergenic
TCTATTTAATCTCCGGTGTG+TGG 0.577155 3.4:-72203997 MS.gene29116:CDS
AGGAAAAGGCGCTCTACGGA+TGG 0.579044 3.4:+72203971 None:intergenic
TCAGACAAAGGCTCAAGTTG+TGG 0.581334 3.4:+72203805 None:intergenic
CACACCGGAGATTAAATAGA+GGG 0.585253 3.4:+72204000 None:intergenic
GAATGATCCCTTGGTTCATG+AGG 0.586065 3.4:+72204982 None:intergenic
CATTCCAGCAAGTTAGCATG+TGG 0.586492 3.4:-72205233 MS.gene29116:CDS
AGAGGCTGCTAAGAAAAGCC+GGG 0.588682 3.4:-72204787 MS.gene29116:CDS
ACAAGGACTAAATAAACTCC+AGG 0.589120 3.4:-72203719 MS.gene29116:CDS
GGCGAGATCCTCCGATCCAT+AGG 0.593085 3.4:+72203951 None:intergenic
GAGTGTCTTGAATCATTACT+CGG 0.593826 3.4:-72204062 MS.gene29116:CDS
CAATCAAGCCCCTAGCACCT+TGG 0.595789 3.4:+72203321 None:intergenic
TTCCAGCAAGTTAGCATGTG+GGG 0.599412 3.4:-72205231 MS.gene29116:CDS
AACCAGACGAAGCTGCACTT+CGG 0.601003 3.4:+72204090 None:intergenic
GCCGAAGATGCTCTTTCACA+AGG 0.601136 3.4:-72203736 MS.gene29116:CDS
AATATATTCCTCATGAACCA+AGG 0.603855 3.4:-72204990 MS.gene29116:CDS
AACATTTGTTCATCAGACAA+AGG 0.607845 3.4:+72203793 None:intergenic
GGAGAGTCTGGTCCAAGACA+TGG 0.608703 3.4:-72203698 MS.gene29116:CDS
AGCAAATCATGGAATTCAGA+TGG 0.610088 3.4:-72203656 MS.gene29116:CDS
TACGGATGGTTTCCACACAC+CGG 0.623678 3.4:+72203985 None:intergenic
ATATATTCCTCATGAACCAA+GGG 0.628071 3.4:-72204989 MS.gene29116:CDS
GACAGCTTTAAAGTTGAAGG+TGG 0.628685 3.4:-72205207 MS.gene29116:CDS
TTGGTGTGTAGACAGGATGC+GGG 0.633617 3.4:+72203340 None:intergenic
TCTACACACCAAGGTGCTAG+GGG 0.638389 3.4:-72203329 MS.gene29116:CDS
ATTCCAGCAAGTTAGCATGT+GGG 0.642837 3.4:-72205232 MS.gene29116:CDS
TCATCTGAAACAATTAACCC+AGG 0.648000 3.4:-72204282 MS.gene29116:intron
CGCATCCTGTCTACACACCA+AGG 0.659708 3.4:-72203338 MS.gene29116:CDS
TCGATTCCAAGATATCACCT+AGG 0.670756 3.4:-72203238 MS.gene29116:CDS
ACGCCTCTCACAGAATCGAG+AGG 0.691290 3.4:-72204805 MS.gene29116:CDS
ACACCGGAGATTAAATAGAG+GGG 0.728769 3.4:+72204001 None:intergenic
GGGTTGACGAGAACCATAGG+CGG 0.739081 3.4:-72204150 MS.gene29116:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTAATATAATTTACTTAT+AGG - chr3.4:72203720-72203739 MS.gene29116:CDS 15.0%
!! TAGCGAATTAGATTAAAAAT+TGG - chr3.4:72204582-72204601 MS.gene29116:intron 20.0%
!! TCAATTTGATAAATTGTGAA+TGG - chr3.4:72205059-72205078 MS.gene29116:intron 20.0%
!! TGAAATTGAATATGGAAATT+GGG - chr3.4:72204305-72204324 MS.gene29116:CDS 20.0%
!! TTGAAATTGAATATGGAAAT+TGG - chr3.4:72204304-72204323 MS.gene29116:CDS 20.0%
!!! AAATGTTTTGTGATAAAACA+TGG - chr3.4:72203598-72203617 MS.gene29116:intron 20.0%
!!! GGTAAATAAATTGTTAGTTT+TGG + chr3.4:72204047-72204066 None:intergenic 20.0%
!!! GTTTTATCACAAAACATTTT+TGG + chr3.4:72203597-72203616 None:intergenic 20.0%
! AAAATTTCTACTTTAGTTGC+AGG - chr3.4:72204129-72204148 MS.gene29116:CDS 25.0%
! AAATTTCTACTTTAGTTGCA+GGG - chr3.4:72204130-72204149 MS.gene29116:CDS 25.0%
! AAGCATATGTTTCATATTTG+TGG + chr3.4:72203929-72203948 None:intergenic 25.0%
! ATATAAATCAGAAGTGAAGA+TGG + chr3.4:72204068-72204087 None:intergenic 25.0%
! ATTGCTATAGACAAATTTGA+GGG - chr3.4:72204844-72204863 MS.gene29116:intron 25.0%
! CTAGTTATAATTTGAACATC+AGG + chr3.4:72204957-72204976 None:intergenic 25.0%
! GAACAATGTAATGATGAATA+TGG + chr3.4:72205041-72205060 None:intergenic 25.0%
! TAGTTAGTTAGTTAGTTAGT+TGG + chr3.4:72203878-72203897 None:intergenic 25.0%
! TATTGCTATAGACAAATTTG+AGG - chr3.4:72204843-72204862 MS.gene29116:intron 25.0%
AACATTTGTTCATCAGACAA+AGG + chr3.4:72204685-72204704 None:intergenic 30.0%
AATATATTCCTCATGAACCA+AGG - chr3.4:72203485-72203504 MS.gene29116:intron 30.0%
ACAAGAGACTACAAACAATA+AGG - chr3.4:72203525-72203544 MS.gene29116:intron 30.0%
ATATATTCCTCATGAACCAA+GGG - chr3.4:72203486-72203505 MS.gene29116:intron 30.0%
ATATCAAGAATCACAAACCT+GGG + chr3.4:72204213-72204232 None:intergenic 30.0%
CCAAGAAATTTGAATCAACT+AGG - chr3.4:72204900-72204919 MS.gene29116:intron 30.0%
GTACATTTAGAAGTTGTGAT+GGG + chr3.4:72204548-72204567 None:intergenic 30.0%
TAATGATTAGTGATTCGTTG+AGG + chr3.4:72204619-72204638 None:intergenic 30.0%
TGTACATTTAGAAGTTGTGA+TGG + chr3.4:72204549-72204568 None:intergenic 30.0%
TTACTGTTCACTAGTAACAT+TGG + chr3.4:72203313-72203332 None:intergenic 30.0%
TTCGTACTATTTGTTCTCTA+TGG - chr3.4:72205201-72205220 MS.gene29116:CDS 30.0%
! CCTAGTTGATTCAAATTTCT+TGG + chr3.4:72204903-72204922 None:intergenic 30.0%
! GGATCTTTTCAGAATGAAAA+CGG - chr3.4:72204434-72204453 MS.gene29116:intron 30.0%
! GTTGCGTTTGAAATTGAATA+TGG - chr3.4:72204297-72204316 MS.gene29116:CDS 30.0%
! TGTTCCTTTGTTGTGTAAAA+CGG - chr3.4:72203758-72203777 MS.gene29116:CDS 30.0%
!! AACTGTTCTATTGAGTTGAA+TGG + chr3.4:72203813-72203832 None:intergenic 30.0%
!! ACTGTTCTATTGAGTTGAAT+GGG + chr3.4:72203812-72203831 None:intergenic 30.0%
ACAAGGACTAAATAAACTCC+AGG - chr3.4:72204756-72204775 MS.gene29116:intron 35.0%
ACATATGCTTGATATTGTGC+AGG - chr3.4:72203939-72203958 MS.gene29116:CDS 35.0%
ACTGTCATCCCAAAATAATG+AGG + chr3.4:72204986-72205005 None:intergenic 35.0%
AGAGTCTGACTCATTTAATG+TGG - chr3.4:72203416-72203435 MS.gene29116:intron 35.0%
AGCAAATCATGGAATTCAGA+TGG - chr3.4:72204819-72204838 MS.gene29116:intron 35.0%
AGTAATCCTAGGTGATATCT+TGG + chr3.4:72205246-72205265 None:intergenic 35.0%
ATCTTTGTGTTCTGTTAACC+AGG - chr3.4:72204270-72204289 MS.gene29116:intron 35.0%
CATCCCAAAATAATGAGGAA+GGG + chr3.4:72204981-72205000 None:intergenic 35.0%
CCATTAAATGCAGCAAATCA+TGG - chr3.4:72204808-72204827 MS.gene29116:CDS 35.0%
GAGTGTCTTGAATCATTACT+CGG - chr3.4:72204413-72204432 MS.gene29116:intron 35.0%
GATATCAAGAATCACAAACC+TGG + chr3.4:72204214-72204233 None:intergenic 35.0%
GGTTGAGGAAATGAAAATTG+AGG - chr3.4:72203779-72203798 MS.gene29116:CDS 35.0%
TCATCCCAAAATAATGAGGA+AGG + chr3.4:72204982-72205001 None:intergenic 35.0%
TCCCATAAAACTGGTATCTA+AGG + chr3.4:72204173-72204192 None:intergenic 35.0%
TCTTTGTGTTCTGTTAACCA+GGG - chr3.4:72204271-72204290 MS.gene29116:intron 35.0%
TTCAGATGATCCCATAAAAC+TGG + chr3.4:72204182-72204201 None:intergenic 35.0%
! AGACCCTTCCTCATTATTTT+GGG - chr3.4:72204975-72204994 MS.gene29116:CDS 35.0%
! TAGACCCTTCCTCATTATTT+TGG - chr3.4:72204974-72204993 MS.gene29116:CDS 35.0%
! TCAACCGTTTTACACAACAA+AGG + chr3.4:72203765-72203784 None:intergenic 35.0%
! TCATCTGAAACAATTAACCC+AGG - chr3.4:72204193-72204212 MS.gene29116:intron 35.0%
! TTTGTTGTGTAAAACGGTTG+AGG - chr3.4:72203764-72203783 MS.gene29116:CDS 35.0%
!! CCATGATTTGCTGCATTTAA+TGG + chr3.4:72204811-72204830 None:intergenic 35.0%
!! GCCTTAGATACCAGTTTTAT+GGG - chr3.4:72204169-72204188 MS.gene29116:CDS 35.0%
!! TTTCTTGGTGTTACATTACC+TGG + chr3.4:72204888-72204907 None:intergenic 35.0%
AAATAAACTCCAGGAGAGTC+TGG - chr3.4:72204765-72204784 MS.gene29116:intron 40.0%
AATGAAAACGGATGCTGCAA+AGG - chr3.4:72204446-72204465 MS.gene29116:intron 40.0%
ACACACCGGAGATTAAATAG+AGG + chr3.4:72204479-72204498 None:intergenic 40.0%
ACACCGGAGATTAAATAGAG+GGG + chr3.4:72204477-72204496 None:intergenic 40.0%
ATGGAACAAATGCCATGTCT+TGG + chr3.4:72204792-72204811 None:intergenic 40.0%
ATTCCAGCAAGTTAGCATGT+GGG - chr3.4:72203243-72203262 MS.gene29116:CDS 40.0%
ATTTCAAACGCAACAATCCC+TGG + chr3.4:72204291-72204310 None:intergenic 40.0%
CACACCGGAGATTAAATAGA+GGG + chr3.4:72204478-72204497 None:intergenic 40.0%
CAGATTGAAGCTCATGCAAT+TGG - chr3.4:72203987-72204006 MS.gene29116:CDS 40.0%
GAACAGTAACACTACTAGCA+TGG - chr3.4:72203324-72203343 MS.gene29116:CDS 40.0%
GATCCCCTCTATTTAATCTC+CGG - chr3.4:72204471-72204490 MS.gene29116:CDS 40.0%
GGTGATATCTTGGAATCGAA+TGG + chr3.4:72205236-72205255 None:intergenic 40.0%
GTGTCTGTGACATTATGTGT+AGG - chr3.4:72203640-72203659 MS.gene29116:CDS 40.0%
TCGATTCCAAGATATCACCT+AGG - chr3.4:72205237-72205256 MS.gene29116:CDS 40.0%
TCTATTTAATCTCCGGTGTG+TGG - chr3.4:72204478-72204497 MS.gene29116:CDS 40.0%
! ATATTACCTTTTTGCGCTCC+CGG + chr3.4:72203709-72203728 None:intergenic 40.0%
! CGCCTTAGATACCAGTTTTA+TGG - chr3.4:72204168-72204187 MS.gene29116:CDS 40.0%
!! ACTCGAAGGTTTTGTAATCC+AGG - chr3.4:72204867-72204886 MS.gene29116:intron 40.0%
!! GACAGCTTTAAAGTTGAAGG+TGG - chr3.4:72203268-72203287 MS.gene29116:CDS 40.0%
!! GGTGACAGCTTTAAAGTTGA+AGG - chr3.4:72203265-72203284 MS.gene29116:CDS 40.0%
!! TCCTTGTGAAAGAGCATCTT+CGG + chr3.4:72204743-72204762 None:intergenic 40.0%
ATCCTCCGATCCATAGGAAA+AGG + chr3.4:72204521-72204540 None:intergenic 45.0%
ATGCAATTGGAGCTGGAGAT+TGG - chr3.4:72204000-72204019 MS.gene29116:CDS 45.0%
CACTACTAGCATGGAGAACA+AGG - chr3.4:72203333-72203352 MS.gene29116:CDS 45.0%
CATTCCAGCAAGTTAGCATG+TGG - chr3.4:72203242-72203261 MS.gene29116:CDS 45.0%
GAATGATCCCTTGGTTCATG+AGG + chr3.4:72203496-72203515 None:intergenic 45.0%
GACAAATTTGAGGGACTCGA+AGG - chr3.4:72204853-72204872 MS.gene29116:intron 45.0%
TCAGCTTCTGAATGATCCCT+TGG + chr3.4:72203505-72203524 None:intergenic 45.0%
TGCAATTGGAGCTGGAGATT+GGG - chr3.4:72204001-72204020 MS.gene29116:CDS 45.0%
TTCCAGCAAGTTAGCATGTG+GGG - chr3.4:72203244-72203263 MS.gene29116:CDS 45.0%
! GAATGGTTTGTGTTGTCGAC+AGG - chr3.4:72205076-72205095 MS.gene29116:intron 45.0%
! TAGTTGCAGGGTATTTGCAC+AGG - chr3.4:72204142-72204161 MS.gene29116:CDS 45.0%
! TCAGACAAAGGCTCAAGTTG+TGG + chr3.4:72204673-72204692 None:intergenic 45.0%
!! ATTGGGTTGACGAGAACCAT+AGG - chr3.4:72204322-72204341 MS.gene29116:CDS 45.0%
!! CACATGCTAACTTGCTGGAA+TGG + chr3.4:72203244-72203263 None:intergenic 45.0%
AACCAGACGAAGCTGCACTT+CGG + chr3.4:72204388-72204407 None:intergenic 50.0%
AGAGGCTGCTAAGAAAAGCC+GGG - chr3.4:72203688-72203707 MS.gene29116:CDS 50.0%
CTAGGGGCTTGATTGCTCTT+GGG - chr3.4:72205162-72205181 MS.gene29116:intron 50.0%
GAAGCTCATGCAATTGGAGC+TGG - chr3.4:72203993-72204012 MS.gene29116:CDS 50.0%
GAGAGGCTGCTAAGAAAAGC+CGG - chr3.4:72203687-72203706 MS.gene29116:CDS 50.0%
GATTGGGAGAGCAAGAAAGC+AGG - chr3.4:72204017-72204036 MS.gene29116:CDS 50.0%
GCCGAAGATGCTCTTTCACA+AGG - chr3.4:72204739-72204758 MS.gene29116:intron 50.0%
GTTGTGGCACAATGAGCTGT+AGG + chr3.4:72204657-72204676 None:intergenic 50.0%
TACGGATGGTTTCCACACAC+CGG + chr3.4:72204493-72204512 None:intergenic 50.0%
TAGGGGCTTGATTGCTCTTG+GGG - chr3.4:72205163-72205182 MS.gene29116:intron 50.0%
TTGGTGTGTAGACAGGATGC+GGG + chr3.4:72205138-72205157 None:intergenic 50.0%
! CTTGGTGTGTAGACAGGATG+CGG + chr3.4:72205139-72205158 None:intergenic 50.0%
! GAGCGCCTTTTCCTATGGAT+CGG - chr3.4:72204513-72204532 MS.gene29116:CDS 50.0%
! GTCTACACACCAAGGTGCTA+GGG - chr3.4:72205145-72205164 MS.gene29116:intron 50.0%
! TAGCACCTTGGTGTGTAGAC+AGG + chr3.4:72205145-72205164 None:intergenic 50.0%
! TCTACACACCAAGGTGCTAG+GGG - chr3.4:72205146-72205165 MS.gene29116:intron 50.0%
! TGTCTACACACCAAGGTGCT+AGG - chr3.4:72205144-72205163 MS.gene29116:intron 50.0%
!! CCATAGGAAAAGGCGCTCTA+CGG + chr3.4:72204511-72204530 None:intergenic 50.0%
ACGCCTCTCACAGAATCGAG+AGG - chr3.4:72203670-72203689 MS.gene29116:CDS 55.0%
CAATCAAGCCCCTAGCACCT+TGG + chr3.4:72205157-72205176 None:intergenic 55.0%
CAGCCTCTCGATTCTGTGAG+AGG + chr3.4:72203676-72203695 None:intergenic 55.0%
CGCATCCTGTCTACACACCA+AGG - chr3.4:72205137-72205156 MS.gene29116:intron 55.0%
GCTAGGGGCTTGATTGCTCT+TGG - chr3.4:72205161-72205180 MS.gene29116:intron 55.0%
GGAGAGTCTGGTCCAAGACA+TGG - chr3.4:72204777-72204796 MS.gene29116:CDS 55.0%
GGGTTGACGAGAACCATAGG+CGG - chr3.4:72204325-72204344 MS.gene29116:CDS 55.0%
GTCGACAGGCAGATCATCTC+AGG - chr3.4:72205090-72205109 MS.gene29116:intron 55.0%
GTGGCACAATGAGCTGTAGG+AGG + chr3.4:72204654-72204673 None:intergenic 55.0%
TGAGCTCTTCGTTCCGCCTA+TGG + chr3.4:72204341-72204360 None:intergenic 55.0%
TGTCTTGGACCAGACTCTCC+TGG + chr3.4:72204777-72204796 None:intergenic 55.0%
! CACCCCACATGCTAACTTGC+TGG + chr3.4:72203249-72203268 None:intergenic 55.0%
! CGCCTTTTCCTATGGATCGG+AGG - chr3.4:72204516-72204535 MS.gene29116:CDS 55.0%
! GAAAAGCCGGGAGCGCAAAA+AGG - chr3.4:72203700-72203719 MS.gene29116:CDS 55.0%
!! AGGAAAAGGCGCTCTACGGA+TGG + chr3.4:72204507-72204526 None:intergenic 55.0%
!! CCGTAGAGCGCCTTTTCCTA+TGG - chr3.4:72204508-72204527 MS.gene29116:CDS 55.0%
GGCGAGATCCTCCGATCCAT+AGG + chr3.4:72204527-72204546 None:intergenic 60.0%
GTCCGAAGTGCAGCTTCGTC+TGG - chr3.4:72204383-72204402 MS.gene29116:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 72203226 72205271 72203226 ID=MS.gene29116
chr3.4 mRNA 72203226 72205271 72203226 ID=MS.gene29116.t1;Parent=MS.gene29116
chr3.4 exon 72205176 72205271 72205176 ID=MS.gene29116.t1.exon1;Parent=MS.gene29116.t1
chr3.4 CDS 72205176 72205271 72205176 ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4 exon 72204951 72205016 72204951 ID=MS.gene29116.t1.exon2;Parent=MS.gene29116.t1
chr3.4 CDS 72204951 72205016 72204951 ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4 exon 72204776 72204835 72204776 ID=MS.gene29116.t1.exon3;Parent=MS.gene29116.t1
chr3.4 CDS 72204776 72204835 72204776 ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4 exon 72204459 72204536 72204459 ID=MS.gene29116.t1.exon4;Parent=MS.gene29116.t1
chr3.4 CDS 72204459 72204536 72204459 ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4 exon 72204283 72204346 72204283 ID=MS.gene29116.t1.exon5;Parent=MS.gene29116.t1
chr3.4 CDS 72204283 72204346 72204283 ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4 exon 72203934 72204205 72203934 ID=MS.gene29116.t1.exon6;Parent=MS.gene29116.t1
chr3.4 CDS 72203934 72204205 72203934 ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4 exon 72203609 72203836 72203609 ID=MS.gene29116.t1.exon7;Parent=MS.gene29116.t1
chr3.4 CDS 72203609 72203836 72203609 ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
chr3.4 exon 72203226 72203399 72203226 ID=MS.gene29116.t1.exon8;Parent=MS.gene29116.t1
chr3.4 CDS 72203226 72203399 72203226 ID=cds.MS.gene29116.t1;Parent=MS.gene29116.t1
Gene Sequence

>MS.gene29116

ATGGATATATACGAGCCATTCCAGCAAGTTAGCATGTGGGGTGACAGCTTTAAAGTTGAAGGTGGTCTTAATTCAATTGCTTCTCCAATGTTACTAGTGAACAGTAACACTACTAGCATGGAGAACAAGGTGAGTTATTATAACTAATAATTTGATTTTATTTATTTATTATTGTTACTTTTATGATTATAGAGTCTGACTCATTTAATGTGGAAACTAGATTATATAACAATCTTATGAATTTGAATTTTGCAGTCTGAATATATTCCTCATGAACCAAGGGATCATTCAGAAGCTGAACAAGAGACTACAAACAATAAGGTAATGAAATTTGATCAAGACATAAATTGTGACATTTTGATTTTTGTCCAAAAATGTTTTGTGATAAAACATGGAAGTTTTTGAGTTGTTTATGTGTCTGTGACATTATGTGTAGGTACTTAGACGCCTCTCACAGAATCGAGAGGCTGCTAAGAAAAGCCGGGAGCGCAAAAAGGTAATATAATTTACTTATAGGAAAAGTCATTTGATTTGTTCCTTTGTTGTGTAAAACGGTTGAGGAAATGAAAATTGAGGTTTTTATCCCATTCAACTCAATAGAACAGTTTATAAAGATGTAAGCAGTTATAACTGACTAACAAACATATTTCCAACTAACTAACTAACTAACTAACTTAGTTCTAACTAGCTTTTAACTAATCCACAAATATGAAACATATGCTTGATATTGTGCAGGCTTATGTTAAACAATTAGAATCAAGCAGATTGAAGCTCATGCAATTGGAGCTGGAGATTGGGAGAGCAAGAAAGCAGGTGAACCAAAACTAACAATTTATTTACCATCTTCACTTCTGATTTATATTTATGTTATGCTCTTTCAATTGTAAATTTTAAGCATATATTAAAATTTCTACTTTAGTTGCAGGGTATTTGCACAGGAAGCGCCTTAGATACCAGTTTTATGGGATCATCTGAAACAATTAACCCAGGTTTGTGATTCTTGATATCAATTGTAAGCATTCTTAATATCTTTTATTCTTATTGATCTTTGTGTTCTGTTAACCAGGGATTGTTGCGTTTGAAATTGAATATGGAAATTGGGTTGACGAGAACCATAGGCGGAACGAAGAGCTCAGAAATGCATTTCAAACTAATGCGTCCGAAGTGCAGCTTCGTCTGGTTGTTCAGAGTGTCTTGAATCATTACTCGGATCTTTTCAGAATGAAAACGGATGCTGCAAAGGCTGATCCCCTCTATTTAATCTCCGGTGTGTGGAAACCATCCGTAGAGCGCCTTTTCCTATGGATCGGAGGATCTCGCCCATCACAACTTCTAAATGTACAAATCTGATCTTAATAGCGAATTAGATTAAAAATTGGTACTGTCGAATCCTCAACGAATCACTAATCATTATTAGATTTTTTTCCTCCTACAGCTCATTGTGCCACAACTTGAGCCTTTGTCTGATGAACAAATGTTGAGCATTAAAAAACTTCATCTGTCGTCTCAGCAAGCCGAAGATGCTCTTTCACAAGGACTAAATAAACTCCAGGAGAGTCTGGTCCAAGACATGGCATTTGTTCCATTAAATGCAGCAAATCATGGAATTCAGATGGCTATTGCTATAGACAAATTTGAGGGACTCGAAGGTTTTGTAATCCAGGTAATGTAACACCAAGAAATTTGAATCAACTAGGAATTTTCTAATGCAACTCTTTTATTCTAAGTCCTGATGTTCAAATTATAACTAGACCCTTCCTCATTATTTTGGGATGACAGTTCATATATTATGAATTAGTATTTCTTTATGCTCCATATTCATCATTACATTGTTCAATTTGATAAATTGTGAATGGTTTGTGTTGTCGACAGGCAGATCATCTCAGGCAGCAAACTCTGATACACATGTCCCGCATCCTGTCTACACACCAAGGTGCTAGGGGCTTGATTGCTCTTGGGGAATACTTTCATCGTCTTCGTACTATTTGTTCTCTATGGACTTCTTGTCCATTCGATTCCAAGATATCACCTAGGATTACTCCTTAG
Protein sequence

>MS.gene29116.t1

MDIYEPFQQVSMWGDSFKVEGGLNSIASPMLLSEYIPHEPRDHSEAEQETTNNKVLRRLSQNREAAKKSRERKKAYVKQLESSRLKLMQLELEIGRARKQGICTGSALDTSFMGSSETINPGIVAFEIEYGNWVDENHRRNEELRNAFQTNASEVQLRLVVQSVLNHYSDLFRMKTDAAKADPLYLISGVWKPSVERLFLWIGGSRPSQLLNLIVPQLEPLSDEQMLSIKKLHLSSQQAEDALSQGLNKLQESLVQDMAFVPLNAANHGIQMAIAIDKFEGLEGFVIQADHLRQQTLIHMSRILSTHQGARGLIALGEYFHRLRTICSLWTSCPFDSKISPRITP