Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29160.t1 | GAU39124.1 | 68.6 | 277 | 70 | 3 | 1 | 277 | 23 | 282 | 8.20E-97 | 364 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29160.t1 | Q9SZL8 | 37.4 | 198 | 118 | 4 | 77 | 270 | 77 | 272 | 1.1e-30 | 135.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29160.t1 | A0A2Z6N2Q3 | 68.6 | 277 | 70 | 3 | 1 | 277 | 23 | 282 | 5.9e-97 | 364.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29160.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29160.t1 | MTR_0402s0040 | 69.000 | 200 | 61 | 1 | 49 | 248 | 2 | 200 | 7.22e-90 | 279 |
| MS.gene29160.t1 | MTR_5g015480 | 65.294 | 170 | 55 | 1 | 33 | 202 | 20 | 185 | 7.55e-68 | 214 |
| MS.gene29160.t1 | MTR_6g017200 | 64.029 | 139 | 49 | 1 | 31 | 168 | 15 | 153 | 1.50e-52 | 171 |
| MS.gene29160.t1 | MTR_2g070590 | 68.966 | 116 | 36 | 0 | 61 | 176 | 5 | 120 | 3.10e-49 | 162 |
| MS.gene29160.t1 | MTR_7g113010 | 57.055 | 163 | 54 | 2 | 36 | 198 | 422 | 568 | 8.87e-49 | 173 |
| MS.gene29160.t1 | MTR_1g057920 | 66.400 | 125 | 40 | 1 | 38 | 162 | 1 | 123 | 6.37e-48 | 159 |
| MS.gene29160.t1 | MTR_0137s0040 | 71.591 | 88 | 25 | 0 | 38 | 125 | 1 | 88 | 4.70e-38 | 132 |
| MS.gene29160.t1 | MTR_7g074790 | 39.888 | 178 | 85 | 4 | 67 | 243 | 4 | 160 | 1.97e-26 | 105 |
| MS.gene29160.t1 | MTR_4g102720 | 33.721 | 172 | 78 | 3 | 70 | 241 | 4 | 139 | 4.42e-24 | 99.4 |
| MS.gene29160.t1 | MTR_1g091013 | 78.571 | 56 | 12 | 0 | 86 | 141 | 14 | 69 | 4.98e-23 | 91.7 |
| MS.gene29160.t1 | MTR_1g050985 | 73.333 | 60 | 16 | 0 | 143 | 202 | 39 | 98 | 1.08e-22 | 91.7 |
| MS.gene29160.t1 | MTR_6g051425 | 29.808 | 208 | 132 | 6 | 80 | 278 | 24 | 226 | 1.67e-22 | 97.4 |
| MS.gene29160.t1 | MTR_0558s0020 | 28.311 | 219 | 138 | 4 | 87 | 286 | 50 | 268 | 2.38e-22 | 96.3 |
| MS.gene29160.t1 | MTR_5g039760 | 34.300 | 207 | 104 | 7 | 67 | 269 | 4 | 182 | 4.29e-22 | 92.8 |
| MS.gene29160.t1 | MTR_1g083640 | 28.194 | 227 | 144 | 4 | 79 | 286 | 57 | 283 | 1.23e-21 | 94.0 |
| MS.gene29160.t1 | MTR_0291s0060 | 61.765 | 68 | 26 | 0 | 52 | 119 | 14 | 81 | 2.32e-21 | 87.8 |
| MS.gene29160.t1 | MTR_1g070355 | 30.583 | 206 | 135 | 5 | 76 | 277 | 77 | 278 | 5.48e-20 | 91.7 |
| MS.gene29160.t1 | MTR_7g061980 | 42.857 | 119 | 64 | 3 | 67 | 184 | 4 | 119 | 2.79e-19 | 83.2 |
| MS.gene29160.t1 | MTR_4g067290 | 44.860 | 107 | 53 | 3 | 73 | 177 | 56 | 158 | 2.93e-19 | 86.3 |
| MS.gene29160.t1 | MTR_4g067290 | 44.860 | 107 | 53 | 3 | 73 | 177 | 56 | 158 | 3.05e-19 | 86.3 |
| MS.gene29160.t1 | MTR_4g067290 | 44.860 | 107 | 53 | 3 | 73 | 177 | 74 | 176 | 5.09e-19 | 85.9 |
| MS.gene29160.t1 | MTR_4g067290 | 44.860 | 107 | 53 | 3 | 73 | 177 | 116 | 218 | 5.23e-19 | 86.7 |
| MS.gene29160.t1 | MTR_4g067290 | 44.860 | 107 | 53 | 3 | 73 | 177 | 76 | 178 | 5.38e-19 | 85.9 |
| MS.gene29160.t1 | MTR_4g067290 | 44.860 | 107 | 53 | 3 | 73 | 177 | 76 | 178 | 5.51e-19 | 85.9 |
| MS.gene29160.t1 | MTR_0337s0040 | 29.530 | 149 | 104 | 1 | 133 | 280 | 75 | 223 | 1.71e-17 | 80.9 |
| MS.gene29160.t1 | MTR_6g090505 | 28.351 | 194 | 124 | 3 | 108 | 286 | 10 | 203 | 3.66e-17 | 82.4 |
| MS.gene29160.t1 | MTR_2g098920 | 40.187 | 107 | 58 | 3 | 73 | 177 | 80 | 182 | 2.54e-16 | 78.6 |
| MS.gene29160.t1 | MTR_1g008290 | 33.566 | 143 | 89 | 3 | 129 | 270 | 7 | 144 | 2.41e-15 | 72.8 |
| MS.gene29160.t1 | MTR_1g019850 | 29.121 | 182 | 118 | 4 | 33 | 211 | 28 | 201 | 4.18e-15 | 74.3 |
| MS.gene29160.t1 | MTR_5g076070 | 27.869 | 183 | 128 | 3 | 54 | 234 | 35 | 215 | 4.43e-15 | 75.1 |
| MS.gene29160.t1 | MTR_2g014100 | 26.238 | 202 | 127 | 4 | 79 | 258 | 50 | 251 | 5.02e-15 | 74.3 |
| MS.gene29160.t1 | MTR_8g446020 | 27.097 | 155 | 112 | 1 | 133 | 286 | 74 | 228 | 9.22e-15 | 73.9 |
| MS.gene29160.t1 | MTR_3g006370 | 40.000 | 110 | 62 | 3 | 73 | 179 | 50 | 158 | 1.20e-14 | 73.2 |
| MS.gene29160.t1 | MTR_2g099430 | 41.379 | 87 | 49 | 1 | 98 | 184 | 28 | 112 | 8.16e-14 | 67.8 |
| MS.gene29160.t1 | MTR_7g446520 | 30.208 | 192 | 116 | 4 | 76 | 266 | 91 | 265 | 3.10e-13 | 70.5 |
| MS.gene29160.t1 | MTR_4g035820 | 27.969 | 261 | 160 | 9 | 45 | 287 | 43 | 293 | 6.77e-13 | 70.5 |
| MS.gene29160.t1 | MTR_6g022080 | 25.974 | 154 | 111 | 2 | 79 | 230 | 91 | 243 | 3.45e-12 | 66.2 |
| MS.gene29160.t1 | MTR_2g098880 | 34.711 | 121 | 74 | 3 | 58 | 175 | 46 | 164 | 2.46e-11 | 63.9 |
| MS.gene29160.t1 | MTR_2g098880 | 34.711 | 121 | 74 | 3 | 58 | 175 | 58 | 176 | 2.93e-11 | 63.5 |
| MS.gene29160.t1 | MTR_1g055240 | 28.000 | 125 | 90 | 0 | 133 | 257 | 25 | 149 | 5.50e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29160.t1 | AT4G38180 | 37.129 | 202 | 121 | 4 | 73 | 270 | 73 | 272 | 3.69e-33 | 131 |
| MS.gene29160.t1 | AT3G59470 | 36.076 | 158 | 84 | 4 | 35 | 177 | 17 | 172 | 1.52e-19 | 87.4 |
| MS.gene29160.t1 | AT3G59470 | 36.076 | 158 | 84 | 4 | 35 | 177 | 17 | 172 | 1.52e-19 | 87.4 |
| MS.gene29160.t1 | AT3G59470 | 36.076 | 158 | 84 | 4 | 35 | 177 | 29 | 184 | 1.66e-19 | 87.4 |
| MS.gene29160.t1 | AT4G15090 | 27.444 | 266 | 179 | 7 | 15 | 277 | 1 | 255 | 7.97e-18 | 85.5 |
| MS.gene29160.t1 | AT4G15090 | 27.444 | 266 | 179 | 7 | 15 | 277 | 1 | 255 | 7.97e-18 | 85.5 |
| MS.gene29160.t1 | AT4G15090 | 27.444 | 266 | 179 | 7 | 15 | 277 | 1 | 255 | 7.97e-18 | 85.5 |
| MS.gene29160.t1 | AT4G15090 | 27.444 | 266 | 179 | 7 | 15 | 277 | 1 | 255 | 7.97e-18 | 85.5 |
| MS.gene29160.t1 | AT4G15090 | 27.444 | 266 | 179 | 7 | 15 | 277 | 1 | 255 | 7.97e-18 | 85.5 |
| MS.gene29160.t1 | AT3G07500 | 38.298 | 141 | 81 | 4 | 38 | 177 | 1 | 136 | 1.50e-15 | 75.5 |
| MS.gene29160.t1 | AT2G43280 | 38.583 | 127 | 67 | 5 | 73 | 192 | 22 | 144 | 2.65e-15 | 74.3 |
| MS.gene29160.t1 | AT1G10240 | 26.106 | 226 | 156 | 6 | 70 | 286 | 45 | 268 | 3.11e-15 | 77.8 |
| MS.gene29160.t1 | AT1G10240 | 26.106 | 226 | 156 | 6 | 70 | 286 | 45 | 268 | 3.11e-15 | 77.8 |
| MS.gene29160.t1 | AT1G76320 | 29.949 | 197 | 117 | 8 | 77 | 267 | 1 | 182 | 6.54e-14 | 73.6 |
| MS.gene29160.t1 | AT1G76320 | 29.949 | 197 | 117 | 8 | 77 | 267 | 1 | 182 | 6.54e-14 | 73.6 |
| MS.gene29160.t1 | AT1G76320 | 29.949 | 197 | 117 | 8 | 77 | 267 | 1 | 182 | 6.71e-14 | 73.6 |
| MS.gene29160.t1 | AT1G76320 | 29.949 | 197 | 117 | 8 | 77 | 267 | 1 | 182 | 7.29e-14 | 73.6 |
| MS.gene29160.t1 | AT4G12850 | 37.931 | 116 | 65 | 3 | 73 | 188 | 11 | 119 | 8.47e-14 | 68.6 |
| MS.gene29160.t1 | AT4G12850 | 38.462 | 104 | 60 | 2 | 73 | 176 | 11 | 110 | 6.20e-13 | 65.9 |
| MS.gene29160.t1 | AT2G43280 | 37.000 | 100 | 59 | 3 | 88 | 184 | 2 | 100 | 1.08e-12 | 66.2 |
| MS.gene29160.t1 | AT4G12850 | 38.462 | 104 | 60 | 2 | 73 | 176 | 11 | 110 | 3.80e-12 | 65.1 |
| MS.gene29160.t1 | AT2G32250 | 32.787 | 122 | 76 | 3 | 77 | 197 | 42 | 158 | 1.03e-11 | 67.0 |
| MS.gene29160.t1 | AT2G32250 | 32.787 | 122 | 76 | 3 | 77 | 197 | 42 | 158 | 1.08e-11 | 67.0 |
| MS.gene29160.t1 | AT2G32250 | 32.787 | 122 | 76 | 3 | 77 | 197 | 42 | 158 | 1.08e-11 | 67.0 |
| MS.gene29160.t1 | AT2G32250 | 32.787 | 122 | 76 | 3 | 77 | 197 | 42 | 158 | 1.11e-11 | 66.6 |
| MS.gene29160.t1 | AT2G32250 | 32.787 | 122 | 76 | 3 | 77 | 197 | 42 | 158 | 1.11e-11 | 66.6 |
| MS.gene29160.t1 | AT2G32250 | 32.787 | 122 | 76 | 3 | 77 | 197 | 42 | 158 | 1.11e-11 | 66.6 |
| MS.gene29160.t1 | AT2G32250 | 32.787 | 122 | 76 | 3 | 77 | 197 | 1 | 117 | 1.19e-11 | 66.6 |
| MS.gene29160.t1 | AT2G32250 | 32.787 | 122 | 76 | 3 | 77 | 197 | 1 | 117 | 1.30e-11 | 66.6 |
| MS.gene29160.t1 | AT3G06250 | 35.135 | 111 | 58 | 2 | 65 | 175 | 20 | 116 | 2.39e-11 | 65.9 |
| MS.gene29160.t1 | AT3G06250 | 35.135 | 111 | 58 | 2 | 65 | 175 | 20 | 116 | 2.39e-11 | 65.9 |
| MS.gene29160.t1 | AT3G06250 | 35.135 | 111 | 58 | 2 | 65 | 175 | 20 | 116 | 2.39e-11 | 65.9 |
| MS.gene29160.t1 | AT5G18960 | 36.893 | 103 | 51 | 2 | 73 | 175 | 43 | 131 | 3.48e-11 | 65.1 |
| MS.gene29160.t1 | AT5G18960 | 36.893 | 103 | 51 | 2 | 73 | 175 | 43 | 131 | 3.48e-11 | 65.1 |
| MS.gene29160.t1 | AT3G22170 | 28.839 | 267 | 134 | 12 | 37 | 277 | 28 | 264 | 3.70e-11 | 65.1 |
| MS.gene29160.t1 | AT3G22170 | 28.839 | 267 | 134 | 12 | 37 | 277 | 28 | 264 | 3.70e-11 | 65.1 |
Find 70 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGCACAAGGCGTGTTAAA+TGG | 0.172000 | 5.3:+22004896 | None:intergenic |
| TTTGGTATTCGCCGGGAATA+TGG | 0.246416 | 5.3:-22005636 | MS.gene29160:CDS |
| CTTTAGCGATTGCATTCTTT+TGG | 0.289816 | 5.3:+22005215 | None:intergenic |
| TGGTTCGAAGGTAATTCTTA+TGG | 0.292735 | 5.3:+22005235 | None:intergenic |
| ACATATTCATGGAAATCTTT+TGG | 0.303983 | 5.3:+22005306 | None:intergenic |
| CGCTTTCCGCATCGTCGCTT+TGG | 0.307771 | 5.3:-22006113 | MS.gene29160:CDS |
| CCTGTTCTTGTTTCTGCTCT+AGG | 0.316546 | 5.3:+22005513 | None:intergenic |
| AACACCTCGATTACCCTCTT+TGG | 0.333326 | 5.3:+22005563 | None:intergenic |
| ATTTCACTTGATCGAAAGAT+TGG | 0.335890 | 5.3:-22005471 | MS.gene29160:CDS |
| TTCTCTACATCTTCGACTAA+TGG | 0.363229 | 5.3:+22005798 | None:intergenic |
| CTTGCCTTGACACATATTCA+TGG | 0.375929 | 5.3:+22005295 | None:intergenic |
| TGGTGTTGCAGCTTCTGTTT+CGG | 0.389895 | 5.3:-22004943 | MS.gene29160:CDS |
| CCTGTAGGCTGCTCCCTCCT+TGG | 0.392802 | 5.3:-22005065 | MS.gene29160:CDS |
| CCATTTAACACGCCTTGTGC+CGG | 0.393599 | 5.3:-22004896 | MS.gene29160:CDS |
| CGGCACAAGGCGTGTTAAAT+GGG | 0.403213 | 5.3:+22004897 | None:intergenic |
| AGAATGCAATCGCTAAAGTA+TGG | 0.405923 | 5.3:-22005210 | MS.gene29160:CDS |
| TGTTAGTGTCGCGATGGGTT+TGG | 0.412581 | 5.3:-22005040 | MS.gene29160:CDS |
| TACAGCAAGAAAACCGGGTT+TGG | 0.421336 | 5.3:-22005654 | MS.gene29160:CDS |
| TTATATACCACAGTTAGAAA+TGG | 0.423637 | 5.3:-22005718 | MS.gene29160:CDS |
| AATGAGTACAGCAAGAAAAC+CGG | 0.435056 | 5.3:-22005660 | MS.gene29160:CDS |
| ATTGTGTTAGCTGACGAATC+TGG | 0.436409 | 5.3:-22005336 | MS.gene29160:CDS |
| GTTGGTGGAAAAGAAATGAT+TGG | 0.443224 | 5.3:-22005273 | MS.gene29160:CDS |
| TGAAATTCGTAAAAGAATGA+AGG | 0.445346 | 5.3:+22005141 | None:intergenic |
| CCAAGGAGGGAGCAGCCTAC+AGG | 0.448635 | 5.3:+22005065 | None:intergenic |
| CCTAGAGCAGAAACAAGAAC+AGG | 0.449488 | 5.3:-22005513 | MS.gene29160:CDS |
| GTGGCTGCTGGTACAGCAGC+TGG | 0.454235 | 5.3:-22005096 | MS.gene29160:CDS |
| CATTTAACACGCCTTGTGCC+GGG | 0.459711 | 5.3:-22004895 | MS.gene29160:CDS |
| GGCTGTTTGGGTGTGACAGA+TGG | 0.462879 | 5.3:-22004988 | MS.gene29160:CDS |
| GCATGACAGCAGCTGTAAGC+TGG | 0.469094 | 5.3:-22004963 | MS.gene29160:CDS |
| GTAGAGAAAGATGGTGCTCC+AGG | 0.473024 | 5.3:+22006161 | None:intergenic |
| TTGGTTTGTTAGTGTCGCGA+TGG | 0.501079 | 5.3:-22005046 | MS.gene29160:CDS |
| AACCGGGTTTGGTATTCGCC+GGG | 0.502609 | 5.3:-22005643 | MS.gene29160:CDS |
| AGGTGGTTGACTTTATTCCT+TGG | 0.505669 | 5.3:-22005440 | MS.gene29160:CDS |
| AATGGACGTTGAAGAGCAAA+TGG | 0.506134 | 5.3:-22005118 | MS.gene29160:CDS |
| TGGTTTGTTAGTGTCGCGAT+GGG | 0.513739 | 5.3:-22005045 | MS.gene29160:CDS |
| AAACCGGGTTTGGTATTCGC+CGG | 0.515133 | 5.3:-22005644 | MS.gene29160:CDS |
| AGCGACGATGCGGAAAGCGC+CGG | 0.521157 | 5.3:+22006117 | None:intergenic |
| CAAGGAGGGAGCAGCCTACA+GGG | 0.525102 | 5.3:+22005066 | None:intergenic |
| TCAGTGCATAGTTGCTAACC+TGG | 0.529561 | 5.3:-22006179 | MS.gene29160:intron |
| TTTGTCATTCTATCTCTCTC+CGG | 0.529655 | 5.3:-22006136 | MS.gene29160:CDS |
| AAGGCAAAGATACAACAAAC+AGG | 0.541549 | 5.3:+22004920 | None:intergenic |
| TGACAAATTGTAGAGAAAGA+TGG | 0.546655 | 5.3:+22006152 | None:intergenic |
| TCGCTAAAGTATGGTGAAGT+GGG | 0.548741 | 5.3:-22005201 | MS.gene29160:CDS |
| AGAAACAAGAACAGGGTGTA+CGG | 0.558156 | 5.3:-22005505 | MS.gene29160:CDS |
| TCGAATTCCATTTCTAACTG+TGG | 0.576106 | 5.3:+22005711 | None:intergenic |
| TTGTATATGTTTGTCAAACC+CGG | 0.579714 | 5.3:+22004877 | None:intergenic |
| CAGCTGGGATATGTCCCTGT+AGG | 0.585772 | 5.3:-22005080 | MS.gene29160:CDS |
| GAAGAGCAAATGGTGGCTGC+TGG | 0.586269 | 5.3:-22005108 | MS.gene29160:CDS |
| ATGAGTACAGCAAGAAAACC+GGG | 0.601087 | 5.3:-22005659 | MS.gene29160:CDS |
| ATCGCTAAAGTATGGTGAAG+TGG | 0.605025 | 5.3:-22005202 | MS.gene29160:CDS |
| TGGCTGCTGGTACAGCAGCT+GGG | 0.609115 | 5.3:-22005095 | MS.gene29160:CDS |
| TTCCCGGCGAATACCAAACC+CGG | 0.617327 | 5.3:+22005641 | None:intergenic |
| AAGATTTGTATGCTCCAAAG+AGG | 0.617936 | 5.3:-22005577 | MS.gene29160:CDS |
| TCGAAAGATTGGAAAATACA+AGG | 0.618453 | 5.3:-22005460 | MS.gene29160:CDS |
| ACAAGGCGTGTTAAATGGGA+AGG | 0.619786 | 5.3:+22004901 | None:intergenic |
| ATTTCCATGAATATGTGTCA+AGG | 0.622616 | 5.3:-22005299 | MS.gene29160:CDS |
| CGACACTAACAAACCAAGGA+GGG | 0.624475 | 5.3:+22005052 | None:intergenic |
| TGTTTGTCAAACCCGGCACA+AGG | 0.626831 | 5.3:+22004884 | None:intergenic |
| TGCTCCAAAGAGGGTAATCG+AGG | 0.630995 | 5.3:-22005567 | MS.gene29160:CDS |
| GAATATGTGTCAAGGCAAGT+TGG | 0.638062 | 5.3:-22005291 | MS.gene29160:CDS |
| TATGTGTCAAGGCAAGTTGG+TGG | 0.638173 | 5.3:-22005288 | MS.gene29160:CDS |
| TGAAGAGTGTGATTATGCCA+AGG | 0.643214 | 5.3:+22005423 | None:intergenic |
| CATGAGCCAAAGCGACGATG+CGG | 0.648849 | 5.3:+22006107 | None:intergenic |
| AGATTTGTATGCTCCAAAGA+GGG | 0.652074 | 5.3:-22005576 | MS.gene29160:CDS |
| ATCATGTGAACAAACTCTTG+CGG | 0.666069 | 5.3:+22005399 | None:intergenic |
| ATCGCGACACTAACAAACCA+AGG | 0.667629 | 5.3:+22005048 | None:intergenic |
| CTAGAGCAGAAACAAGAACA+GGG | 0.672182 | 5.3:-22005512 | MS.gene29160:CDS |
| GCGACACTAACAAACCAAGG+AGG | 0.722654 | 5.3:+22005051 | None:intergenic |
| AAAGATTGGAAAATACAAGG+TGG | 0.727764 | 5.3:-22005457 | MS.gene29160:CDS |
| GGACGTTGAAGAGCAAATGG+TGG | 0.750330 | 5.3:-22005115 | MS.gene29160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATAAATAATTAAAAA+AGG | - | chr5.3:22006154-22006173 | MS.gene29160:CDS | 0.0% |
| !! | ATATTATATACTATTAACTT+CGG | + | chr5.3:22005635-22005654 | None:intergenic | 10.0% |
| !! | AAATATGATGATTAATTAGA+TGG | - | chr5.3:22005668-22005687 | MS.gene29160:CDS | 15.0% |
| !! | AATAAAAATCAGTATATAAC+AGG | + | chr5.3:22006535-22006554 | None:intergenic | 15.0% |
| !! | AATATGATGATTAATTAGAT+GGG | - | chr5.3:22005669-22005688 | MS.gene29160:CDS | 15.0% |
| !! | AATTAAGTCTTTAATTCTAA+AGG | - | chr5.3:22006101-22006120 | MS.gene29160:intron | 15.0% |
| !! | ATAAAAATCAGTATATAACA+GGG | + | chr5.3:22006534-22006553 | None:intergenic | 15.0% |
| !! | ATGAATAATAAGATCAAAAC+AGG | + | chr5.3:22006618-22006637 | None:intergenic | 20.0% |
| !! | ATGAATAATAAGATCAAAAG+AGG | + | chr5.3:22006444-22006463 | None:intergenic | 20.0% |
| !! | GTAAGACATTAATATACATT+TGG | + | chr5.3:22005746-22005765 | None:intergenic | 20.0% |
| !! | TGAATAATAAGATCAAAACA+GGG | + | chr5.3:22006617-22006636 | None:intergenic | 20.0% |
| !! | TGAATAATAAGATCAAAAGA+GGG | + | chr5.3:22006443-22006462 | None:intergenic | 20.0% |
| !!! | ATTCTTTTACGAATTTCAAA+TGG | - | chr5.3:22007347-22007366 | MS.gene29160:intron | 20.0% |
| !!! | TATTATTTAGTATGTTGACT+TGG | + | chr5.3:22005483-22005502 | None:intergenic | 20.0% |
| !!! | TGGTTTTTTCTTTTTAGTTT+GGG | - | chr5.3:22005072-22005091 | MS.gene29160:CDS | 20.0% |
| !!! | TTGATAACAAAATAACAATG+CGG | + | chr5.3:22006415-22006434 | None:intergenic | 20.0% |
| !!! | TTGGTTTTTTCTTTTTAGTT+TGG | - | chr5.3:22005071-22005090 | MS.gene29160:CDS | 20.0% |
| ! | AAATGATCAATGGTTAAGTT+TGG | - | chr5.3:22004873-22004892 | MS.gene29160:CDS | 25.0% |
| ! | AAGAGATAACTTTGAACAAA+AGG | + | chr5.3:22005045-22005064 | None:intergenic | 25.0% |
| ! | ATATTAATGTCTTACATGCT+TGG | - | chr5.3:22005751-22005770 | MS.gene29160:CDS | 25.0% |
| ! | CTATTAACTTCGGATAAAAA+AGG | + | chr5.3:22005625-22005644 | None:intergenic | 25.0% |
| ! | GAGAAAATAGAATGATGAAT+TGG | + | chr5.3:22005931-22005950 | None:intergenic | 25.0% |
| ! | GGAAATAAAAGCAAAAAAGA+TGG | - | chr5.3:22006868-22006887 | MS.gene29160:intron | 25.0% |
| ! | TAAGTTCACTAAATGATCAA+TGG | - | chr5.3:22004863-22004882 | MS.gene29160:CDS | 25.0% |
| ! | TGAAATTCGTAAAAGAATGA+AGG | + | chr5.3:22007345-22007364 | None:intergenic | 25.0% |
| ! | TTATATACCACAGTTAGAAA+TGG | - | chr5.3:22006765-22006784 | MS.gene29160:intron | 25.0% |
| !! | AAAGTTATCTCTTGATGTTT+TGG | - | chr5.3:22005052-22005071 | MS.gene29160:CDS | 25.0% |
| !! | ACATATTCATGGAAATCTTT+TGG | + | chr5.3:22007180-22007199 | None:intergenic | 25.0% |
| !! | CAATTTTGCAATTGAGTATA+AGG | + | chr5.3:22007641-22007660 | None:intergenic | 25.0% |
| !! | TCTTTATCTTTCAAGGTATT+GGG | - | chr5.3:22006004-22006023 | MS.gene29160:intron | 25.0% |
| !! | TGATGAAGAAGAGTAATTTT+TGG | + | chr5.3:22006287-22006306 | None:intergenic | 25.0% |
| !!! | CACATTTTTTATGCACTTTT+TGG | - | chr5.3:22005105-22005124 | MS.gene29160:CDS | 25.0% |
| AAAGATTGGAAAATACAAGG+TGG | - | chr5.3:22007026-22007045 | MS.gene29160:intron | 30.0% | |
| ACAAGTGCTTAAAATCTTAG+AGG | - | chr5.3:22005509-22005528 | MS.gene29160:CDS | 30.0% | |
| ATACCTTGAAAGATAAAGAG+AGG | + | chr5.3:22006003-22006022 | None:intergenic | 30.0% | |
| ATTCCTCTTATCAGTATTTC+TGG | - | chr5.3:22004966-22004985 | MS.gene29160:CDS | 30.0% | |
| ATTCTTCAAGCATTCGTATT+TGG | + | chr5.3:22005706-22005725 | None:intergenic | 30.0% | |
| ATTTCACTTGATCGAAAGAT+TGG | - | chr5.3:22007012-22007031 | MS.gene29160:intron | 30.0% | |
| ATTTCCATGAATATGTGTCA+AGG | - | chr5.3:22007184-22007203 | MS.gene29160:intron | 30.0% | |
| CAATATCCAAAAAGACATTG+TGG | - | chr5.3:22006717-22006736 | MS.gene29160:intron | 30.0% | |
| CTCTTTATCTTTCAAGGTAT+TGG | - | chr5.3:22006003-22006022 | MS.gene29160:intron | 30.0% | |
| GTATTATGAGCAGATTTCTA+AGG | + | chr5.3:22005297-22005316 | None:intergenic | 30.0% | |
| GTTTAAAAGGAAATGAAGTC+TGG | + | chr5.3:22005266-22005285 | None:intergenic | 30.0% | |
| TACCTTGAAAGATAAAGAGA+GGG | + | chr5.3:22006002-22006021 | None:intergenic | 30.0% | |
| TCGAAAGATTGGAAAATACA+AGG | - | chr5.3:22007023-22007042 | MS.gene29160:intron | 30.0% | |
| TGACAAATTGTAGAGAAAGA+TGG | + | chr5.3:22006334-22006353 | None:intergenic | 30.0% | |
| TTGTATATGTTTGTCAAACC+CGG | + | chr5.3:22007609-22007628 | None:intergenic | 30.0% | |
| ! | AAGATTCGTTCATGTTTTTC+TGG | + | chr5.3:22006660-22006679 | None:intergenic | 30.0% |
| ! | AGATTCGTTCATGTTTTTCT+GGG | + | chr5.3:22006659-22006678 | None:intergenic | 30.0% |
| !! | AGTATTTCTGGAAGAATTAG+TGG | - | chr5.3:22004978-22004997 | MS.gene29160:CDS | 30.0% |
| !! | AGTTTTGATCTTAGCAACTT+TGG | - | chr5.3:22005343-22005362 | MS.gene29160:CDS | 30.0% |
| !! | TGCTTTTATTTCCATATTCC+CGG | + | chr5.3:22006861-22006880 | None:intergenic | 30.0% |
| AAGACTTCAAAATGCTGAGA+TGG | - | chr5.3:22005582-22005601 | MS.gene29160:CDS | 35.0% | |
| AAGATTTGTATGCTCCAAAG+AGG | - | chr5.3:22006906-22006925 | MS.gene29160:intron | 35.0% | |
| AAGGCAAAGATACAACAAAC+AGG | + | chr5.3:22007566-22007585 | None:intergenic | 35.0% | |
| AATGAGTACAGCAAGAAAAC+CGG | - | chr5.3:22006823-22006842 | MS.gene29160:intron | 35.0% | |
| ACTCGCTTTCAGTTCATTAT+TGG | + | chr5.3:22005454-22005473 | None:intergenic | 35.0% | |
| AGAATGCAATCGCTAAAGTA+TGG | - | chr5.3:22007273-22007292 | MS.gene29160:intron | 35.0% | |
| AGATTTGTATGCTCCAAAGA+GGG | - | chr5.3:22006907-22006926 | MS.gene29160:intron | 35.0% | |
| ATCATGTGAACAAACTCTTG+CGG | + | chr5.3:22007087-22007106 | None:intergenic | 35.0% | |
| CAAAAAGACATTGTGGAACA+TGG | - | chr5.3:22006724-22006743 | MS.gene29160:intron | 35.0% | |
| CTTCCAGAAATACTGATAAG+AGG | + | chr5.3:22004972-22004991 | None:intergenic | 35.0% | |
| TAAGGAGAGGGTTGTTTAAA+AGG | + | chr5.3:22005279-22005298 | None:intergenic | 35.0% | |
| TAATGTCTTACATGCTTGGT+CGG | - | chr5.3:22005755-22005774 | MS.gene29160:CDS | 35.0% | |
| TATGAGCAGATTTCCAAGTT+AGG | + | chr5.3:22005017-22005036 | None:intergenic | 35.0% | |
| TCGAATTCCATTTCTAACTG+TGG | + | chr5.3:22006775-22006794 | None:intergenic | 35.0% | |
| TGATGAAGAAGAGTGATTTC+TGG | + | chr5.3:22006217-22006236 | None:intergenic | 35.0% | |
| TGGTTCGAAGGTAATTCTTA+TGG | + | chr5.3:22007251-22007270 | None:intergenic | 35.0% | |
| TTCTCTACATCTTCGACTAA+TGG | + | chr5.3:22006688-22006707 | None:intergenic | 35.0% | |
| TTGGAAACACTGCAAATTGA+AGG | + | chr5.3:22006268-22006287 | None:intergenic | 35.0% | |
| TTTGTCATTCTATCTCTCTC+CGG | - | chr5.3:22006347-22006366 | MS.gene29160:intron | 35.0% | |
| ! | CATGTTCCACAATGTCTTTT+TGG | + | chr5.3:22006726-22006745 | None:intergenic | 35.0% |
| ! | CTTTAGCGATTGCATTCTTT+TGG | + | chr5.3:22007271-22007290 | None:intergenic | 35.0% |
| ! | GTTGGTGGAAAAGAAATGAT+TGG | - | chr5.3:22007210-22007229 | MS.gene29160:intron | 35.0% |
| !! | AATGGTTAAGTTTGGTGTGA+CGG | - | chr5.3:22004881-22004900 | MS.gene29160:CDS | 35.0% |
| !!! | ATTGCATTCTTTTGGTTCGA+AGG | + | chr5.3:22007263-22007282 | None:intergenic | 35.0% |
| AATGGACGTTGAAGAGCAAA+TGG | - | chr5.3:22007365-22007384 | MS.gene29160:intron | 40.0% | |
| AATGTCTTACATGCTTGGTC+GGG | - | chr5.3:22005756-22005775 | MS.gene29160:CDS | 40.0% | |
| AGAAACAAGAACAGGGTGTA+CGG | - | chr5.3:22006978-22006997 | MS.gene29160:intron | 40.0% | |
| ATCGCTAAAGTATGGTGAAG+TGG | - | chr5.3:22007281-22007300 | MS.gene29160:intron | 40.0% | |
| ATGAGTACAGCAAGAAAACC+GGG | - | chr5.3:22006824-22006843 | MS.gene29160:intron | 40.0% | |
| ATTGTGTTAGCTGACGAATC+TGG | - | chr5.3:22007147-22007166 | MS.gene29160:intron | 40.0% | |
| CTAGAGCAGAAACAAGAACA+GGG | - | chr5.3:22006971-22006990 | MS.gene29160:intron | 40.0% | |
| CTCCCTCTCTTTATCTTTCA+AGG | - | chr5.3:22005997-22006016 | MS.gene29160:intron | 40.0% | |
| CTTGCCTTGACACATATTCA+TGG | + | chr5.3:22007191-22007210 | None:intergenic | 40.0% | |
| GAATATGTGTCAAGGCAAGT+TGG | - | chr5.3:22007192-22007211 | MS.gene29160:intron | 40.0% | |
| TCGCTAAAGTATGGTGAAGT+GGG | - | chr5.3:22007282-22007301 | MS.gene29160:intron | 40.0% | |
| TCTGGAAGAATTAGTGGAGA+TGG | - | chr5.3:22004984-22005003 | MS.gene29160:CDS | 40.0% | |
| TGATAAGAGGAATCCCTGAA+TGG | + | chr5.3:22004959-22004978 | None:intergenic | 40.0% | |
| ! | AGGTGGTTGACTTTATTCCT+TGG | - | chr5.3:22007043-22007062 | MS.gene29160:intron | 40.0% |
| ! | ATGAGCAGATTTCTAAGGAG+AGG | + | chr5.3:22005292-22005311 | None:intergenic | 40.0% |
| ! | TGAAGAGTGTGATTATGCCA+AGG | + | chr5.3:22007063-22007082 | None:intergenic | 40.0% |
| ! | TGAGCAGATTTCTAAGGAGA+GGG | + | chr5.3:22005291-22005310 | None:intergenic | 40.0% |
| ! | TTAATTCTAAAGGACCCGTG+CGG | - | chr5.3:22006111-22006130 | MS.gene29160:CDS | 40.0% |
| !! | CGACTGGATTTCAGTTTTGT+GGG | - | chr5.3:22005176-22005195 | MS.gene29160:CDS | 40.0% |
| !! | TGATGTTGGTTCTCCATTCA+GGG | - | chr5.3:22004943-22004962 | MS.gene29160:CDS | 40.0% |
| !! | TTGTGTTGATCTTTTGCGAC+TGG | - | chr5.3:22005160-22005179 | MS.gene29160:CDS | 40.0% |
| !!! | GCTTGTTCGGCTTTGTTTTT+GGG | - | chr5.3:22007474-22007493 | MS.gene29160:intron | 40.0% |
| !!! | GCTTTGTTTTTGGGCTGTTT+GGG | - | chr5.3:22007483-22007502 | MS.gene29160:intron | 40.0% |
| !!! | TTTGGTTTTAGGGGCTTGTT+CGG | - | chr5.3:22007461-22007480 | MS.gene29160:intron | 40.0% |
| AACACCTCGATTACCCTCTT+TGG | + | chr5.3:22006923-22006942 | None:intergenic | 45.0% | |
| ACAAGGCGTGTTAAATGGGA+AGG | + | chr5.3:22007585-22007604 | None:intergenic | 45.0% | |
| ATCGCGACACTAACAAACCA+AGG | + | chr5.3:22007438-22007457 | None:intergenic | 45.0% | |
| CCTAGAGCAGAAACAAGAAC+AGG | - | chr5.3:22006970-22006989 | MS.gene29160:intron | 45.0% | |
| CGACACTAACAAACCAAGGA+GGG | + | chr5.3:22007434-22007453 | None:intergenic | 45.0% | |
| CTGCAAATTGAAGGAGAGTG+TGG | + | chr5.3:22006259-22006278 | None:intergenic | 45.0% | |
| GAATGGAGAACCAACATCAG+AGG | + | chr5.3:22004942-22004961 | None:intergenic | 45.0% | |
| TACAGCAAGAAAACCGGGTT+TGG | - | chr5.3:22006829-22006848 | MS.gene29160:intron | 45.0% | |
| TCAGTGCATAGTTGCTAACC+TGG | - | chr5.3:22006304-22006323 | MS.gene29160:intron | 45.0% | |
| TTTGGTATTCGCCGGGAATA+TGG | - | chr5.3:22006847-22006866 | MS.gene29160:intron | 45.0% | |
| ! | ATAAAGAGAGGGAGAGTGTG+AGG | + | chr5.3:22005991-22006010 | None:intergenic | 45.0% |
| ! | GCGACTGGATTTCAGTTTTG+TGG | - | chr5.3:22005175-22005194 | MS.gene29160:CDS | 45.0% |
| ! | TATGTGTCAAGGCAAGTTGG+TGG | - | chr5.3:22007195-22007214 | MS.gene29160:intron | 45.0% |
| ! | TGACGGATGCTGCAAATCAT+AGG | - | chr5.3:22004898-22004917 | MS.gene29160:CDS | 45.0% |
| !! | AGATGGACTGTCACCTAACT+TGG | - | chr5.3:22005001-22005020 | MS.gene29160:CDS | 45.0% |
| !! | CCTGTTCTTGTTTCTGCTCT+AGG | + | chr5.3:22006973-22006992 | None:intergenic | 45.0% |
| !! | CTGATGTTGGTTCTCCATTC+AGG | - | chr5.3:22004942-22004961 | MS.gene29160:CDS | 45.0% |
| !! | GAAGGAGAGTGTGGTTTTCT+GGG | + | chr5.3:22006250-22006269 | None:intergenic | 45.0% |
| !! | TGAAGGAGAGTGTGGTTTTC+TGG | + | chr5.3:22006251-22006270 | None:intergenic | 45.0% |
| !! | TGGTGTTGCAGCTTCTGTTT+CGG | - | chr5.3:22007540-22007559 | MS.gene29160:intron | 45.0% |
| !! | TGGTTTGTTAGTGTCGCGAT+GGG | - | chr5.3:22007438-22007457 | MS.gene29160:intron | 45.0% |
| !! | TTGGTTTGTTAGTGTCGCGA+TGG | - | chr5.3:22007437-22007456 | MS.gene29160:intron | 45.0% |
| !!! | GGCTTGTTCGGCTTTGTTTT+TGG | - | chr5.3:22007473-22007492 | MS.gene29160:intron | 45.0% |
| !!! | GGCTTTGTTTTTGGGCTGTT+TGG | - | chr5.3:22007482-22007501 | MS.gene29160:intron | 45.0% |
| !!! | TCGCGATGGGTTTGGTTTTA+GGG | - | chr5.3:22007451-22007470 | MS.gene29160:intron | 45.0% |
| AGGAAATGAAGAGACGTGCG+CGG | - | chr5.3:22006174-22006193 | MS.gene29160:intron | 50.0% | |
| CATACTTCCGCCTCTGATGT+TGG | - | chr5.3:22004929-22004948 | MS.gene29160:CDS | 50.0% | |
| CATTTAACACGCCTTGTGCC+GGG | - | chr5.3:22007588-22007607 | MS.gene29160:intron | 50.0% | |
| CCATTTAACACGCCTTGTGC+CGG | - | chr5.3:22007587-22007606 | MS.gene29160:intron | 50.0% | |
| CGGCACAAGGCGTGTTAAAT+GGG | + | chr5.3:22007589-22007608 | None:intergenic | 50.0% | |
| GCGACACTAACAAACCAAGG+AGG | + | chr5.3:22007435-22007454 | None:intergenic | 50.0% | |
| GGACGTTGAAGAGCAAATGG+TGG | - | chr5.3:22007368-22007387 | MS.gene29160:intron | 50.0% | |
| GTAGAGAAAGATGGTGCTCC+AGG | + | chr5.3:22006325-22006344 | None:intergenic | 50.0% | |
| TGCTCCAAAGAGGGTAATCG+AGG | - | chr5.3:22006916-22006935 | MS.gene29160:intron | 50.0% | |
| TGGAGAACCAACATCAGAGG+CGG | + | chr5.3:22004939-22004958 | None:intergenic | 50.0% | |
| TGTTTGTCAAACCCGGCACA+AGG | + | chr5.3:22007602-22007621 | None:intergenic | 50.0% | |
| ! | AAACCGGGTTTGGTATTCGC+CGG | - | chr5.3:22006839-22006858 | MS.gene29160:intron | 50.0% |
| ! | TGTTAGTGTCGCGATGGGTT+TGG | - | chr5.3:22007443-22007462 | MS.gene29160:intron | 50.0% |
| !!! | CGCGATGGGTTTGGTTTTAG+GGG | - | chr5.3:22007452-22007471 | MS.gene29160:intron | 50.0% |
| !!! | GTCGCGATGGGTTTGGTTTT+AGG | - | chr5.3:22007450-22007469 | MS.gene29160:intron | 50.0% |
| CAGCTGGGATATGTCCCTGT+AGG | - | chr5.3:22007403-22007422 | MS.gene29160:intron | 55.0% | |
| CATGAGCCAAAGCGACGATG+CGG | + | chr5.3:22006379-22006398 | None:intergenic | 55.0% | |
| CCGGCACAAGGCGTGTTAAA+TGG | + | chr5.3:22007590-22007609 | None:intergenic | 55.0% | |
| GAAGAGCAAATGGTGGCTGC+TGG | - | chr5.3:22007375-22007394 | MS.gene29160:intron | 55.0% | |
| GCATGACAGCAGCTGTAAGC+TGG | - | chr5.3:22007520-22007539 | MS.gene29160:intron | 55.0% | |
| GGAAATGAAGAGACGTGCGC+GGG | - | chr5.3:22006175-22006194 | MS.gene29160:intron | 55.0% | |
| GGCTGTTTGGGTGTGACAGA+TGG | - | chr5.3:22007495-22007514 | MS.gene29160:intron | 55.0% | |
| TTCCCGGCGAATACCAAACC+CGG | + | chr5.3:22006845-22006864 | None:intergenic | 55.0% | |
| ! | AACCGGGTTTGGTATTCGCC+GGG | - | chr5.3:22006840-22006859 | MS.gene29160:intron | 55.0% |
| CAAGGAGGGAGCAGCCTACA+GGG | + | chr5.3:22007420-22007439 | None:intergenic | 60.0% | |
| CGCTTTCCGCATCGTCGCTT+TGG | - | chr5.3:22006370-22006389 | MS.gene29160:intron | 60.0% | |
| TGAAGAGACGTGCGCGGGAA+AGG | - | chr5.3:22006180-22006199 | MS.gene29160:intron | 60.0% | |
| TGGCTGCTGGTACAGCAGCT+GGG | - | chr5.3:22007388-22007407 | MS.gene29160:intron | 60.0% | |
| CCAAGGAGGGAGCAGCCTAC+AGG | + | chr5.3:22007421-22007440 | None:intergenic | 65.0% | |
| CCTGTAGGCTGCTCCCTCCT+TGG | - | chr5.3:22007418-22007437 | MS.gene29160:intron | 65.0% | |
| GTGGCTGCTGGTACAGCAGC+TGG | - | chr5.3:22007387-22007406 | MS.gene29160:intron | 65.0% | |
| TAAAGGACCCGTGCGGCGCA+CGG | - | chr5.3:22006118-22006137 | MS.gene29160:CDS | 65.0% | |
| ! | AGCGACGATGCGGAAAGCGC+CGG | + | chr5.3:22006369-22006388 | None:intergenic | 65.0% |
| ! | TTGATGACCCGTGCGCCGCA+CGG | + | chr5.3:22006129-22006148 | None:intergenic | 65.0% |
| AAAGGACCCGTGCGGCGCAC+GGG | - | chr5.3:22006119-22006138 | MS.gene29160:CDS | 70.0% | |
| TGATGACCCGTGCGCCGCAC+GGG | + | chr5.3:22006128-22006147 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 22004840 | 22007665 | 22004840 | ID=MS.gene29160 |
| chr5.3 | mRNA | 22004840 | 22007665 | 22004840 | ID=MS.gene29160.t1;Parent=MS.gene29160 |
| chr5.3 | exon | 22007644 | 22007665 | 22007644 | ID=MS.gene29160.t1.exon1;Parent=MS.gene29160.t1 |
| chr5.3 | CDS | 22007644 | 22007665 | 22007644 | ID=cds.MS.gene29160.t1;Parent=MS.gene29160.t1 |
| chr5.3 | exon | 22006108 | 22006190 | 22006108 | ID=MS.gene29160.t1.exon2;Parent=MS.gene29160.t1 |
| chr5.3 | CDS | 22006108 | 22006190 | 22006108 | ID=cds.MS.gene29160.t1;Parent=MS.gene29160.t1 |
| chr5.3 | exon | 22004840 | 22005844 | 22004840 | ID=MS.gene29160.t1.exon3;Parent=MS.gene29160.t1 |
| chr5.3 | CDS | 22004840 | 22005844 | 22004840 | ID=cds.MS.gene29160.t1;Parent=MS.gene29160.t1 |
| Gene Sequence |
| Protein sequence |
