AlfalfaGEDB | MS.gene29228

M. sativa cultivar XinJiangDaYe / MS.gene29228

KEGG: K08065
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29228.t1	XP_003589766.1	98.4	190	2	1	1	189	1	190	8.50E-82	313.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29228.t1	Q84W66	84.4	96	15	0	4	99	56	151	3.0e-43	176.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29228.t1	G7ICG4	98.4	190	2	1	1	189	1	190	6.1e-82	313.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene29228.t1	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29228.t1	MTR_1g039040	97.895	190	3	1	1	189	1	190	1.43e-140	389
MS.gene29228.t1	MTR_4g133952	81.188	101	19	0	4	104	56	156	2.25e-58	183
MS.gene29228.t1	MTR_7g061270	65.625	96	33	0	4	99	24	119	2.94e-47	152
MS.gene29228.t1	MTR_2g026710	62.745	102	38	0	2	103	13	114	4.60e-47	152
MS.gene29228.t1	MTR_7g100650	65.625	96	33	0	4	99	24	119	5.36e-47	152
MS.gene29228.t1	MTR_5g095740	62.037	108	41	0	5	112	22	129	6.18e-47	152
MS.gene29228.t1	MTR_3g058980	68.421	95	30	0	5	99	26	120	1.58e-46	151
MS.gene29228.t1	MTR_8g091720	62.745	102	38	0	5	106	27	128	4.15e-45	148
MS.gene29228.t1	MTR_1g072790	60.194	103	41	0	5	107	28	130	1.40e-44	146
MS.gene29228.t1	MTR_8g093920	60.606	99	39	0	5	103	39	137	8.40e-44	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29228.t1	AT5G47670	84.375	96	15	0	4	99	27	122	4.33e-58	181
MS.gene29228.t1	AT5G47670	84.375	96	15	0	4	99	56	151	7.57e-58	181
MS.gene29228.t1	AT5G47670	84.375	96	15	0	4	99	56	151	7.57e-58	181
MS.gene29228.t1	AT1G21970	69.231	130	22	2	5	116	58	187	3.59e-57	180
MS.gene29228.t1	AT4G14540	65.686	102	35	0	2	103	17	118	8.56e-49	156
MS.gene29228.t1	AT2G38880	64.583	96	34	0	4	99	19	114	1.74e-46	149
MS.gene29228.t1	AT2G38880	64.583	96	34	0	4	99	19	114	2.09e-46	149
MS.gene29228.t1	AT2G38880	64.583	96	34	0	4	99	19	114	2.09e-46	149
MS.gene29228.t1	AT2G38880	64.583	96	34	0	4	99	19	114	2.09e-46	149
MS.gene29228.t1	AT5G47640	64.356	101	36	0	5	105	26	126	5.18e-46	150

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Find 30 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTGGTACAAAACTAG+AGG	0.609583	1.1:+23413215	None:intergenic
AAGATATACTATGGGCAATG+GGG	0.655865	1.1:-23413509	MS.gene29228:CDS
AATAATAATTATAATAGCAA+TGG	0.511458	1.1:-23413312	MS.gene29228:CDS
AATAGCAATGGTTATGGTCA+TGG	0.503506	1.1:-23413300	MS.gene29228:CDS
AATGGTTATGGTCATGGTTA+TGG	0.317428	1.1:-23413294	MS.gene29228:CDS
AATTATAATAGCAATGGTTA+TGG	0.433619	1.1:-23413306	MS.gene29228:CDS
AGAAAACTACAATCAAAGTT+TGG	0.434642	1.1:+23413201	None:intergenic
AGAAGATATACTATGGGCAA+TGG	0.533910	1.1:-23413511	MS.gene29228:CDS
AGGTAACTTGAATCAATGGC+TGG	0.500850	1.1:-23413726	None:intergenic
ATACGAATCACGTTTGCTAT+TGG	0.343423	1.1:+23413678	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTTGGTACAAAACTAG+AGG	+	chr1.1:23413663-23413682	None:intergenic	30.0%
CGTTGAAGGTAAAATGTTAA+AGG	+	chr1.1:23413419-23413438	None:intergenic	30.0%
TACAGCAGAAGATATACTAT+GGG	-	chr1.1:23413358-23413377	MS.gene29228:CDS	30.0%
TTACAGCAGAAGATATACTA+TGG	-	chr1.1:23413357-23413376	MS.gene29228:CDS	30.0%
AAGATATACTATGGGCAATG+GGG	-	chr1.1:23413366-23413385	MS.gene29228:CDS	35.0%
AATAGCAATGGTTATGGTCA+TGG	-	chr1.1:23413575-23413594	MS.gene29228:CDS	35.0%
AATGGTTATGGTCATGGTTA+TGG	-	chr1.1:23413581-23413600	MS.gene29228:CDS	35.0%
AGAAGATATACTATGGGCAA+TGG	-	chr1.1:23413364-23413383	MS.gene29228:CDS	35.0%
GAAGATATACTATGGGCAAT+GGG	-	chr1.1:23413365-23413384	MS.gene29228:CDS	35.0%
TGCATTAATGGAAAAGAAGG+AGG	+	chr1.1:23413500-23413519	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	23413164	23413733	23413164	ID=MS.gene29228
chr1.1	mRNA	23413164	23413733	23413164	ID=MS.gene29228.t1;Parent=MS.gene29228
chr1.1	exon	23413164	23413733	23413164	ID=MS.gene29228.t1.exon1;Parent=MS.gene29228.t1
chr1.1	CDS	23413164	23413733	23413164	ID=cds.MS.gene29228.t1;Parent=MS.gene29228.t1

Gene Sequence

>MS.gene29228

ATGGCTGGAATAAGGGAACAAGACCAATACATGCCAATAGCAAACGTGATTCGTATAATGCGACGAATTCTTCCGTCGCATGCAAAAATCTCCGACGACGCAAAAGAAACCATTCAAGAATGTGTATCCGAATACATAAGCTTCATAACATCTGAAGCAAACGATCGTTGCCAAAGAGAACAAAGAAAAACAGTTACAGCAGAAGATATACTATGGGCAATGGGGAAACTAGGTTTTGATGATTATGTTCATCCTTTAACATTTTACCTTCAACGTTACCGTGAAAGTGAAGGTGAACCTGCTTCTGTTCGACGCACTTCTTCTCTTGCTTTGCCTCCTTCTTTTCCATTAATGCAGCAGCATTCTTCATCATTTTCATCAATGCCACTTCCTCTAATTAATAATAATTATAATAGCAATGGTTATGGTCATGGTTATGGTTTTGATTTTGATCAAGGGTTTTATAGAGATGGTGGTGATGATGCTGCTCCTTCTTCCTCTAGTTTTGTACCAAACTTTGATTGTAGTTTTCTTCATCTCAAACGTGATAATCATAATAATAATATGTGA

Protein sequence

>MS.gene29228.t1

MAGIREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANDRCQREQRKTVTAEDILWAMGKLGFDDYVHPLTFYLQRYRESEGEPASVRRTSSLALPPSFPLMQQHSSSFSSMPLPLINNNYNSNGYGHGYGFDFDQGFYRDGGDDAAPSSSSFVPNFDCSFLHLKRDNHNNNM