Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29247.t1 | RHN78372.1 | 82.2 | 572 | 84 | 1 | 1 | 572 | 1 | 554 | 4.60E-272 | 946.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29247.t1 | Q336N8 | 52.1 | 470 | 214 | 5 | 6 | 469 | 101 | 565 | 1.1e-136 | 488.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29247.t1 | A0A396JLW8 | 82.2 | 572 | 84 | 1 | 1 | 572 | 1 | 554 | 3.3e-272 | 946.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29247.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29247.t1 | MTR_1g038370 | 88.112 | 572 | 48 | 1 | 1 | 572 | 1 | 552 | 0.0 | 1048 |
| MS.gene29247.t1 | MTR_1g038400 | 76.923 | 572 | 104 | 3 | 2 | 571 | 22 | 567 | 0.0 | 883 |
| MS.gene29247.t1 | MTR_5g029370 | 52.209 | 498 | 231 | 3 | 2 | 493 | 83 | 579 | 0.0 | 541 |
| MS.gene29247.t1 | MTR_5g029370 | 52.209 | 498 | 231 | 3 | 2 | 493 | 83 | 579 | 0.0 | 541 |
| MS.gene29247.t1 | MTR_7g407000 | 80.556 | 144 | 10 | 2 | 181 | 323 | 28 | 154 | 6.90e-75 | 235 |
| MS.gene29247.t1 | MTR_3g075210 | 37.500 | 360 | 189 | 8 | 8 | 346 | 18 | 362 | 8.62e-67 | 236 |
| MS.gene29247.t1 | MTR_8g089260 | 31.273 | 550 | 291 | 14 | 4 | 476 | 29 | 568 | 1.30e-57 | 208 |
| MS.gene29247.t1 | MTR_1g078070 | 30.250 | 519 | 271 | 14 | 6 | 446 | 148 | 653 | 1.90e-53 | 196 |
| MS.gene29247.t1 | MTR_1g078070 | 30.250 | 519 | 271 | 14 | 6 | 446 | 148 | 653 | 3.16e-53 | 196 |
| MS.gene29247.t1 | MTR_1g094740 | 44.681 | 188 | 100 | 1 | 152 | 339 | 291 | 474 | 5.82e-53 | 195 |
| MS.gene29247.t1 | MTR_5g010300 | 33.882 | 425 | 221 | 13 | 109 | 511 | 323 | 709 | 1.62e-52 | 194 |
| MS.gene29247.t1 | MTR_5g010300 | 40.000 | 300 | 147 | 9 | 88 | 365 | 303 | 591 | 1.74e-52 | 194 |
| MS.gene29247.t1 | MTR_5g010300 | 40.000 | 300 | 147 | 9 | 88 | 365 | 303 | 591 | 1.78e-52 | 194 |
| MS.gene29247.t1 | MTR_5g010300 | 40.000 | 300 | 147 | 9 | 88 | 365 | 303 | 591 | 1.98e-52 | 194 |
| MS.gene29247.t1 | MTR_2g047130 | 34.509 | 397 | 222 | 13 | 134 | 502 | 232 | 618 | 1.03e-47 | 179 |
| MS.gene29247.t1 | MTR_2g047130 | 34.509 | 397 | 222 | 13 | 134 | 502 | 229 | 615 | 1.16e-47 | 179 |
| MS.gene29247.t1 | MTR_7g097070 | 31.761 | 318 | 187 | 11 | 156 | 455 | 338 | 643 | 1.50e-30 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29247.t1 | AT5G46910 | 54.105 | 475 | 215 | 3 | 7 | 479 | 102 | 575 | 0.0 | 541 |
| MS.gene29247.t1 | AT5G46910 | 54.832 | 476 | 210 | 5 | 7 | 479 | 102 | 575 | 0.0 | 540 |
| MS.gene29247.t1 | AT3G48430 | 34.324 | 370 | 199 | 8 | 8 | 339 | 20 | 383 | 2.94e-59 | 214 |
| MS.gene29247.t1 | AT2G34880 | 30.855 | 538 | 280 | 15 | 7 | 470 | 60 | 579 | 1.52e-58 | 209 |
| MS.gene29247.t1 | AT1G63490 | 43.396 | 265 | 124 | 6 | 93 | 340 | 52 | 307 | 1.13e-56 | 206 |
| MS.gene29247.t1 | AT1G63490 | 43.561 | 264 | 123 | 6 | 94 | 340 | 306 | 560 | 1.58e-56 | 206 |
| MS.gene29247.t1 | AT1G63490 | 43.561 | 264 | 123 | 6 | 94 | 340 | 306 | 560 | 1.61e-56 | 206 |
| MS.gene29247.t1 | AT1G30810 | 30.112 | 538 | 289 | 13 | 4 | 466 | 55 | 580 | 5.88e-56 | 202 |
| MS.gene29247.t1 | AT1G30810 | 30.112 | 538 | 289 | 13 | 4 | 466 | 55 | 580 | 5.88e-56 | 202 |
| MS.gene29247.t1 | AT1G30810 | 30.112 | 538 | 289 | 13 | 4 | 466 | 55 | 580 | 5.88e-56 | 202 |
| MS.gene29247.t1 | AT4G20400 | 26.987 | 604 | 343 | 15 | 4 | 528 | 52 | 636 | 1.28e-54 | 199 |
| MS.gene29247.t1 | AT5G04240 | 46.277 | 188 | 97 | 1 | 152 | 339 | 259 | 442 | 2.06e-52 | 194 |
| MS.gene29247.t1 | AT4G20400 | 27.196 | 592 | 333 | 15 | 16 | 528 | 7 | 579 | 1.05e-51 | 191 |
| MS.gene29247.t1 | AT1G08620 | 34.857 | 350 | 189 | 10 | 117 | 439 | 313 | 650 | 1.16e-45 | 174 |
| MS.gene29247.t1 | AT1G08620 | 34.857 | 350 | 189 | 10 | 117 | 439 | 313 | 650 | 1.16e-45 | 174 |
| MS.gene29247.t1 | AT1G08620 | 34.857 | 350 | 189 | 10 | 117 | 439 | 313 | 650 | 1.16e-45 | 174 |
| MS.gene29247.t1 | AT1G08620 | 34.857 | 350 | 189 | 10 | 117 | 439 | 327 | 664 | 1.36e-45 | 173 |
| MS.gene29247.t1 | AT2G38950 | 24.881 | 631 | 367 | 18 | 2 | 550 | 102 | 707 | 1.04e-33 | 137 |
| MS.gene29247.t1 | AT1G63490 | 55.172 | 87 | 39 | 0 | 254 | 340 | 15 | 101 | 1.40e-24 | 109 |
Find 79 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACAATTGTACAGCCTCTT+AGG | 0.195974 | 1.1:+23088952 | MS.gene29247:CDS |
| TGACATGCAGCCTCTGCTTT+AGG | 0.237204 | 1.1:+23090912 | MS.gene29247:CDS |
| TTCTTTACCGCAAAATCTAT+TGG | 0.253886 | 1.1:-23089159 | None:intergenic |
| GCTCCTGAGGCTTCTAAATA+TGG | 0.264118 | 1.1:+23088410 | MS.gene29247:CDS |
| TGTCTTAACGGAAGAGAAAA+AGG | 0.267528 | 1.1:+23088917 | MS.gene29247:CDS |
| GATGTATTCATTTATGTTAT+AGG | 0.277368 | 1.1:-23091236 | None:intergenic |
| GACATGCAGCCTCTGCTTTA+GGG | 0.297262 | 1.1:+23090913 | MS.gene29247:CDS |
| AATCCAGCATGATATGAATT+AGG | 0.298533 | 1.1:-23090048 | None:intergenic |
| GCTCGATCCGACGTGTCTTC+AGG | 0.311406 | 1.1:-23090782 | None:intergenic |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1.1:-23090698 | None:intergenic |
| GAGAAAGGAACAGTTGAGTA+TGG | 0.324983 | 1.1:+23089236 | MS.gene29247:CDS |
| AGCTATTCAAATACATCATT+AGG | 0.343820 | 1.1:+23090884 | MS.gene29247:CDS |
| ATAAAGGACTCGTTGTCTTT+TGG | 0.343992 | 1.1:-23091611 | None:intergenic |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1.1:-23090707 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.359872 | 1.1:-23090980 | None:intergenic |
| AACAAGCAATTTCAATTTGA+AGG | 0.380018 | 1.1:+23089310 | MS.gene29247:CDS |
| TAAACTTTGCTATTGATGAT+TGG | 0.380245 | 1.1:+23090624 | MS.gene29247:CDS |
| GACAAAAGAAGCAGGATTAG+AGG | 0.392437 | 1.1:-23088898 | None:intergenic |
| TTTGATTTGAAAACCCTAAG+AGG | 0.423006 | 1.1:-23088966 | None:intergenic |
| ACTGAAAGCAGAATAATAAC+TGG | 0.424878 | 1.1:+23091431 | MS.gene29247:intron |
| CTGATCCTATGCTTTACATT+GGG | 0.424948 | 1.1:+23089641 | MS.gene29247:CDS |
| TGTTCTGATGGATAATAAGT+TGG | 0.426588 | 1.1:-23088350 | None:intergenic |
| CACAATTGTACAGCCTCTTA+GGG | 0.435355 | 1.1:+23088953 | MS.gene29247:CDS |
| CTTGTTCCAAGCTTATCATC+AGG | 0.440827 | 1.1:-23089293 | None:intergenic |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1.1:+23090694 | MS.gene29247:CDS |
| TTGATGATTGGTTTCCACTC+GGG | 0.459678 | 1.1:+23090636 | MS.gene29247:CDS |
| AGAAGAACTGTTGGCTCGCT+AGG | 0.462050 | 1.1:+23091472 | MS.gene29247:CDS |
| TTTCTGTCAAGTAAACGTAA+TGG | 0.468536 | 1.1:-23089519 | None:intergenic |
| TGCTCAAACTCTTGTTCTGA+TGG | 0.476367 | 1.1:-23088362 | None:intergenic |
| TTACCATATTTAGAAGCCTC+AGG | 0.481047 | 1.1:-23088413 | None:intergenic |
| TTTCCTAATTCATATCATGC+TGG | 0.481919 | 1.1:+23090045 | MS.gene29247:CDS |
| ATGAGGTCTTACCATGGAAA+AGG | 0.484485 | 1.1:-23090988 | None:intergenic |
| ACATAATGTGCCGGTTTACA+AGG | 0.487938 | 1.1:+23089990 | MS.gene29247:CDS |
| TTGAAGATCACTATTTGTAC+AGG | 0.488775 | 1.1:+23089692 | MS.gene29247:CDS |
| GTGCCACAAAATTGTTTATG+TGG | 0.488853 | 1.1:+23091100 | MS.gene29247:CDS |
| ATTTGAAGCTCTTGCAAACA+AGG | 0.496352 | 1.1:+23089130 | MS.gene29247:CDS |
| GACAACATACTGTATTTAAG+AGG | 0.498182 | 1.1:+23091125 | MS.gene29247:CDS |
| GAAATGATACATGGAGAGAA+AGG | 0.501243 | 1.1:+23089221 | MS.gene29247:CDS |
| ATCATCAGGATCACTTGAAA+AGG | 0.501772 | 1.1:-23089279 | None:intergenic |
| AATTGAGAGGCTGCAGAGCT+AGG | 0.502653 | 1.1:-23089847 | None:intergenic |
| TACAACTCCTCAAAAGATAG+AGG | 0.507371 | 1.1:+23090746 | MS.gene29247:CDS |
| GGTGGAAATAAAACTTGGTA+TGG | 0.514584 | 1.1:+23089820 | MS.gene29247:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.515442 | 1.1:+23089640 | MS.gene29247:CDS |
| AGTGATCCTGATGATAAGCT+TGG | 0.516084 | 1.1:+23089287 | MS.gene29247:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1.1:+23089665 | MS.gene29247:CDS |
| TGATGATTGGTTTCCACTCG+GGG | 0.519820 | 1.1:+23090637 | MS.gene29247:CDS |
| TTACAAGGCGATGCAAAAGC+CGG | 0.522105 | 1.1:+23090005 | MS.gene29247:CDS |
| TCCGTTAAGACAAAAGAAGC+AGG | 0.523048 | 1.1:-23088906 | None:intergenic |
| ACTCAGGTGGAAATAAAACT+TGG | 0.530514 | 1.1:+23089815 | MS.gene29247:CDS |
| ATTGATGATTGGTTTCCACT+CGG | 0.533262 | 1.1:+23090635 | MS.gene29247:CDS |
| TTAGCAGAACATGGAGAGAA+TGG | 0.538483 | 1.1:+23089910 | MS.gene29247:CDS |
| TTATGTTCTAACAAGACATC+AGG | 0.538881 | 1.1:-23089973 | None:intergenic |
| CTTGTTAGAACATAATGTGC+CGG | 0.547471 | 1.1:+23089981 | MS.gene29247:CDS |
| CAACATCTAAAATGAAAACA+AGG | 0.559880 | 1.1:+23091497 | MS.gene29247:CDS |
| TCTGCAGAAAATTGCTCCTG+AGG | 0.560467 | 1.1:+23088397 | MS.gene29247:CDS |
| TTTATAAGACATCATTATCA+CGG | 0.560917 | 1.1:+23090837 | MS.gene29247:CDS |
| CAAGACATCAGGAGAGAACA+TGG | 0.563327 | 1.1:-23089962 | None:intergenic |
| TACAAGGCGATGCAAAAGCC+GGG | 0.563332 | 1.1:+23090006 | MS.gene29247:CDS |
| ATAAATTATCATCACTCAGG+TGG | 0.565750 | 1.1:+23089802 | MS.gene29247:CDS |
| AAAAGTGCTAGAAGAACTGT+TGG | 0.570842 | 1.1:+23091463 | MS.gene29247:CDS |
| TTCTGGAACGAAATGATACA+TGG | 0.573280 | 1.1:+23089212 | MS.gene29247:CDS |
| AATGGAGACTGTGGCAGCCG+CGG | 0.576119 | 1.1:-23089501 | None:intergenic |
| TGCCACAAAATTGTTTATGT+GGG | 0.576308 | 1.1:+23091101 | MS.gene29247:CDS |
| GCAGGATTAGAGGCATCGAT+TGG | 0.582539 | 1.1:-23088888 | None:intergenic |
| AAGGTGATGACAAACTCTCC+CGG | 0.582876 | 1.1:-23090024 | None:intergenic |
| AGCTAAAGGGAAGATACTGC+AGG | 0.589749 | 1.1:-23091673 | None:intergenic |
| AACAAAATCTTAGCAGAACA+TGG | 0.596081 | 1.1:+23089901 | MS.gene29247:CDS |
| AGTATAAATTATCATCACTC+AGG | 0.598943 | 1.1:+23089799 | MS.gene29247:intron |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1.1:-23089646 | None:intergenic |
| TATCATGCTGGATTTAGTCA+CGG | 0.625895 | 1.1:+23090057 | MS.gene29247:CDS |
| AGCATGATATGAATTAGGAA+AGG | 0.636839 | 1.1:-23090043 | None:intergenic |
| GCAGAATAATAACTGGCATG+AGG | 0.639560 | 1.1:+23091438 | MS.gene29247:intron |
| TCACTAGCTGCAGCCCCGAG+TGG | 0.642968 | 1.1:-23090650 | None:intergenic |
| CATAACAATCCCTAAAGCAG+AGG | 0.654524 | 1.1:-23090922 | None:intergenic |
| AACATCTAAAATGAAAACAA+GGG | 0.675033 | 1.1:+23091498 | MS.gene29247:CDS |
| TGAATACATCAAAGAACACA+AGG | 0.678690 | 1.1:+23091249 | MS.gene29247:CDS |
| AGTAAACGTAATGGAGACTG+TGG | 0.682153 | 1.1:-23089510 | None:intergenic |
| TGAGTATGGAGTCAATGTTG+AGG | 0.703101 | 1.1:+23089250 | MS.gene29247:CDS |
| AATCAAACCTGAAGACACGT+CGG | 0.715406 | 1.1:+23090775 | MS.gene29247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATACTGCAAAAAATA+CGG | - | chr1.1:23089789-23089808 | None:intergenic | 15.0% |
| !! | ATATTTGATCTTAATATTTC+AGG | + | chr1.1:23088846-23088865 | MS.gene29247:intron | 15.0% |
| !!! | TTTTAGTATAACCTATATTT+TGG | - | chr1.1:23088707-23088726 | None:intergenic | 15.0% |
| !! | AATAGTCAAATAGAATAATG+AGG | - | chr1.1:23091008-23091027 | None:intergenic | 20.0% |
| !! | GATGTATTCATTTATGTTAT+AGG | - | chr1.1:23091239-23091258 | None:intergenic | 20.0% |
| !! | TGATGAAAAATTAACTAACT+TGG | + | chr1.1:23089067-23089086 | MS.gene29247:intron | 20.0% |
| !! | TTTATAAGACATCATTATCA+CGG | + | chr1.1:23090837-23090856 | MS.gene29247:CDS | 20.0% |
| !!! | AACAACTTTTAATTCAGATT+AGG | - | chr1.1:23089573-23089592 | None:intergenic | 20.0% |
| !!! | AACATCTAAAATGAAAACAA+GGG | + | chr1.1:23091498-23091517 | MS.gene29247:CDS | 20.0% |
| !!! | ACATAAGTATTTAAAATAGC+AGG | - | chr1.1:23090494-23090513 | None:intergenic | 20.0% |
| !!! | ATCATTTTCATGTTGATTTT+AGG | + | chr1.1:23090581-23090600 | MS.gene29247:intron | 20.0% |
| !!! | TGGATATTGCTTATATTTTA+CGG | + | chr1.1:23090172-23090191 | MS.gene29247:intron | 20.0% |
| ! | AAAGTGAAACTCCAAAATAT+AGG | + | chr1.1:23088693-23088712 | MS.gene29247:intron | 25.0% |
| ! | AACAAGCAATTTCAATTTGA+AGG | + | chr1.1:23089310-23089329 | MS.gene29247:CDS | 25.0% |
| ! | AGAACGATGTAATCTAATAT+AGG | + | chr1.1:23088752-23088771 | MS.gene29247:intron | 25.0% |
| ! | AGCTATTCAAATACATCATT+AGG | + | chr1.1:23090884-23090903 | MS.gene29247:CDS | 25.0% |
| ! | AGTATAAATTATCATCACTC+AGG | + | chr1.1:23089799-23089818 | MS.gene29247:intron | 25.0% |
| ! | ATAAAAAAACCCTAGAAACA+CGG | - | chr1.1:23088471-23088490 | None:intergenic | 25.0% |
| ! | ATAAAAAAACCCTAGAAACA+TGG | - | chr1.1:23088471-23088490 | None:intergenic | 25.0% |
| ! | CGATATTTAATTATGGAGTT+CGG | - | chr1.1:23090355-23090374 | None:intergenic | 25.0% |
| ! | GATTACTTGTGTAAATACTA+CGG | - | chr1.1:23090265-23090284 | None:intergenic | 25.0% |
| ! | TAGATATCGAAAAATTGTTC+TGG | + | chr1.1:23089195-23089214 | MS.gene29247:CDS | 25.0% |
| ! | TGTCTATTAATCTTTACTTG+CGG | + | chr1.1:23089415-23089434 | MS.gene29247:intron | 25.0% |
| !! | ATGGATAAACTTGCTTATTA+TGG | + | chr1.1:23091062-23091081 | MS.gene29247:intron | 25.0% |
| !! | ATTTTCTGCAGATAAACTAA+AGG | - | chr1.1:23088389-23088408 | None:intergenic | 25.0% |
| !! | CAACATCTAAAATGAAAACA+AGG | + | chr1.1:23091497-23091516 | MS.gene29247:CDS | 25.0% |
| !! | CATGTTTTCTCAAGTTATAA+AGG | - | chr1.1:23091630-23091649 | None:intergenic | 25.0% |
| !! | CTTATATTTTACGGATAAGT+AGG | + | chr1.1:23090181-23090200 | MS.gene29247:intron | 25.0% |
| !! | TACAAAAATTGATTCCTTAC+TGG | - | chr1.1:23089549-23089568 | None:intergenic | 25.0% |
| !!! | ACTATTTTAATGAAGTTCAG+AGG | - | chr1.1:23091318-23091337 | None:intergenic | 25.0% |
| !!! | TAAACTTTGCTATTGATGAT+TGG | + | chr1.1:23090624-23090643 | MS.gene29247:CDS | 25.0% |
| !!! | TAACTTTTTCTAAGAGAAGA+AGG | + | chr1.1:23089003-23089022 | MS.gene29247:CDS | 25.0% |
| !!! | TAATTTGCTTGTGTTATTGA+TGG | + | chr1.1:23091043-23091062 | MS.gene29247:intron | 25.0% |
| !!! | TTGATTTTAGGTTTTAACTG+TGG | + | chr1.1:23090593-23090612 | MS.gene29247:intron | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1.1:23089942-23089961 | None:intergenic | 25.0% |
| AACAAAATCTTAGCAGAACA+TGG | + | chr1.1:23089901-23089920 | MS.gene29247:CDS | 30.0% | |
| AATCCAGCATGATATGAATT+AGG | - | chr1.1:23090051-23090070 | None:intergenic | 30.0% | |
| ACTGAAAGCAGAATAATAAC+TGG | + | chr1.1:23091431-23091450 | MS.gene29247:intron | 30.0% | |
| AGCATGATATGAATTAGGAA+AGG | - | chr1.1:23090046-23090065 | None:intergenic | 30.0% | |
| AGGTCGATTGAATAATAGAA+AGG | + | chr1.1:23090205-23090224 | MS.gene29247:intron | 30.0% | |
| AGTAGCATTCTTACTATAGT+TGG | - | chr1.1:23088590-23088609 | None:intergenic | 30.0% | |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1.1:23090701-23090720 | None:intergenic | 30.0% | |
| ATAAATTATCATCACTCAGG+TGG | + | chr1.1:23089802-23089821 | MS.gene29247:CDS | 30.0% | |
| CTTTCTATTATGCAAGCTTA+GGG | - | chr1.1:23090294-23090313 | None:intergenic | 30.0% | |
| GAACACGCGATATTTAATTA+TGG | - | chr1.1:23090362-23090381 | None:intergenic | 30.0% | |
| GACAACATACTGTATTTAAG+AGG | + | chr1.1:23091125-23091144 | MS.gene29247:CDS | 30.0% | |
| GTAGCATTCTTACTATAGTT+GGG | - | chr1.1:23088589-23088608 | None:intergenic | 30.0% | |
| TGAATACATCAAAGAACACA+AGG | + | chr1.1:23091249-23091268 | MS.gene29247:CDS | 30.0% | |
| TGCCACAAAATTGTTTATGT+GGG | + | chr1.1:23091101-23091120 | MS.gene29247:CDS | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.1:23090710-23090729 | None:intergenic | 30.0% | |
| TTATGTTCTAACAAGACATC+AGG | - | chr1.1:23089976-23089995 | None:intergenic | 30.0% | |
| TTCTCTCTCTATAAATGTGT+TGG | + | chr1.1:23090132-23090151 | MS.gene29247:intron | 30.0% | |
| TTCTTTACCGCAAAATCTAT+TGG | - | chr1.1:23089162-23089181 | None:intergenic | 30.0% | |
| TTGAAGATCACTATTTGTAC+AGG | + | chr1.1:23089692-23089711 | MS.gene29247:CDS | 30.0% | |
| TTGACAGAAAAATTCCAGTA+AGG | + | chr1.1:23089532-23089551 | MS.gene29247:intron | 30.0% | |
| TTTCCTAATTCATATCATGC+TGG | + | chr1.1:23090045-23090064 | MS.gene29247:CDS | 30.0% | |
| TTTCTGTCAAGTAAACGTAA+TGG | - | chr1.1:23089522-23089541 | None:intergenic | 30.0% | |
| ! | CAAAAGTTTTCAACTGGAAA+AGG | + | chr1.1:23091177-23091196 | MS.gene29247:CDS | 30.0% |
| ! | CTTTTCCAGTTGAAAACTTT+TGG | - | chr1.1:23091179-23091198 | None:intergenic | 30.0% |
| ! | GACAATCTTTTCAAATTGAG+AGG | - | chr1.1:23089863-23089882 | None:intergenic | 30.0% |
| ! | GGTTTTCAAATCAAATGAGA+TGG | + | chr1.1:23088974-23088993 | MS.gene29247:CDS | 30.0% |
| ! | TGAATAATAGAAAGGTACGT+AGG | + | chr1.1:23090213-23090232 | MS.gene29247:intron | 30.0% |
| ! | TGTTCTGATGGATAATAAGT+TGG | - | chr1.1:23088353-23088372 | None:intergenic | 30.0% |
| ! | TTTGTAACCTCTATCTTTTG+AGG | - | chr1.1:23090756-23090775 | None:intergenic | 30.0% |
| !! | GAATGCTACTTACTTTCTTT+TGG | + | chr1.1:23088600-23088619 | MS.gene29247:intron | 30.0% |
| !! | TGGTGTTATTATGTTTCTGA+TGG | + | chr1.1:23090152-23090171 | MS.gene29247:intron | 30.0% |
| !! | TTTGATTTGAAAACCCTAAG+AGG | - | chr1.1:23088969-23088988 | None:intergenic | 30.0% |
| !!! | TTTGATTTTAGAATTTGCCG+CGG | + | chr1.1:23089484-23089503 | MS.gene29247:intron | 30.0% |
| AACTATTAGAACTTCAGGCA+TGG | - | chr1.1:23090408-23090427 | None:intergenic | 35.0% | |
| ACAACAGATTCTGCATTTGT+AGG | + | chr1.1:23088787-23088806 | MS.gene29247:intron | 35.0% | |
| ACTCAGGTGGAAATAAAACT+TGG | + | chr1.1:23089815-23089834 | MS.gene29247:CDS | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1.1:23089640-23089659 | MS.gene29247:CDS | 35.0% | |
| AGAATAATGAGGTCTTACCA+TGG | - | chr1.1:23090997-23091016 | None:intergenic | 35.0% | |
| AGGTTATACTAAAACCACAG+TGG | + | chr1.1:23088713-23088732 | MS.gene29247:intron | 35.0% | |
| ATCATCAGGATCACTTGAAA+AGG | - | chr1.1:23089282-23089301 | None:intergenic | 35.0% | |
| CCTAAGCTTGCATAATAGAA+AGG | + | chr1.1:23090292-23090311 | MS.gene29247:intron | 35.0% | |
| CCTTTCTATTATGCAAGCTT+AGG | - | chr1.1:23090295-23090314 | None:intergenic | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1.1:23089641-23089660 | MS.gene29247:CDS | 35.0% | |
| CTTGTTAGAACATAATGTGC+CGG | + | chr1.1:23089981-23090000 | MS.gene29247:CDS | 35.0% | |
| GAAATGATACATGGAGAGAA+AGG | + | chr1.1:23089221-23089240 | MS.gene29247:CDS | 35.0% | |
| GCAGTAACTATTAGAACTTC+AGG | - | chr1.1:23090413-23090432 | None:intergenic | 35.0% | |
| GCTACCTATAATTCCATATG+AGG | + | chr1.1:23090694-23090713 | MS.gene29247:CDS | 35.0% | |
| GGTGGAAATAAAACTTGGTA+TGG | + | chr1.1:23089820-23089839 | MS.gene29247:CDS | 35.0% | |
| GTATGCATTGCTTTATCTTC+AGG | + | chr1.1:23091362-23091381 | MS.gene29247:intron | 35.0% | |
| GTGCCACAAAATTGTTTATG+TGG | + | chr1.1:23091100-23091119 | MS.gene29247:CDS | 35.0% | |
| TACAACTCCTCAAAAGATAG+AGG | + | chr1.1:23090746-23090765 | MS.gene29247:CDS | 35.0% | |
| TATCATGCTGGATTTAGTCA+CGG | + | chr1.1:23090057-23090076 | MS.gene29247:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1.1:23089665-23089684 | MS.gene29247:CDS | 35.0% | |
| TGTCTTAACGGAAGAGAAAA+AGG | + | chr1.1:23088917-23088936 | MS.gene29247:CDS | 35.0% | |
| TTACCATATTTAGAAGCCTC+AGG | - | chr1.1:23088416-23088435 | None:intergenic | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.1:23090983-23091002 | None:intergenic | 35.0% | |
| ! | ATAAAGGACTCGTTGTCTTT+TGG | - | chr1.1:23091614-23091633 | None:intergenic | 35.0% |
| ! | ATTTGAAGCTCTTGCAAACA+AGG | + | chr1.1:23089130-23089149 | MS.gene29247:CDS | 35.0% |
| ! | CTCCCACATAAACAATTTTG+TGG | - | chr1.1:23091106-23091125 | None:intergenic | 35.0% |
| ! | GCGTTTTCCAATAGATTTTG+CGG | + | chr1.1:23089152-23089171 | MS.gene29247:CDS | 35.0% |
| ! | TATTTTACGGATAAGTAGGC+AGG | + | chr1.1:23090185-23090204 | MS.gene29247:intron | 35.0% |
| ! | TCCTGCTTCTTTTGTCTTAA+CGG | + | chr1.1:23088905-23088924 | MS.gene29247:CDS | 35.0% |
| ! | TTTCCATCACCATGTTTCTA+GGG | + | chr1.1:23088459-23088478 | MS.gene29247:intron | 35.0% |
| ! | TTTTCCATCACCATGTTTCT+AGG | + | chr1.1:23088458-23088477 | MS.gene29247:intron | 35.0% |
| !! | AAAAGTGCTAGAAGAACTGT+TGG | + | chr1.1:23091463-23091482 | MS.gene29247:CDS | 35.0% |
| !! | ATTGATGATTGGTTTCCACT+CGG | + | chr1.1:23090635-23090654 | MS.gene29247:CDS | 35.0% |
| !! | TTCTGGAACGAAATGATACA+TGG | + | chr1.1:23089212-23089231 | MS.gene29247:CDS | 35.0% |
| AAACCCTAGAAACATGGTGA+TGG | - | chr1.1:23088465-23088484 | None:intergenic | 40.0% | |
| AACATCATCACCGTGTTTCT+AGG | + | chr1.1:23088513-23088532 | MS.gene29247:intron | 40.0% | |
| AATCAAACCTGAAGACACGT+CGG | + | chr1.1:23090775-23090794 | MS.gene29247:CDS | 40.0% | |
| ACACAATTGTACAGCCTCTT+AGG | + | chr1.1:23088952-23088971 | MS.gene29247:CDS | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1.1:23089649-23089668 | None:intergenic | 40.0% | |
| AGTGATCCTGATGATAAGCT+TGG | + | chr1.1:23089287-23089306 | MS.gene29247:CDS | 40.0% | |
| ATGAGGTCTTACCATGGAAA+AGG | - | chr1.1:23090991-23091010 | None:intergenic | 40.0% | |
| CACAATTGTACAGCCTCTTA+GGG | + | chr1.1:23088953-23088972 | MS.gene29247:CDS | 40.0% | |
| CAGGAACTGAAATTCTGCAT+GGG | - | chr1.1:23090475-23090494 | None:intergenic | 40.0% | |
| CATAACAATCCCTAAAGCAG+AGG | - | chr1.1:23090925-23090944 | None:intergenic | 40.0% | |
| CGCGTGCATGTTTAGATTAA+AGG | + | chr1.1:23088647-23088666 | MS.gene29247:intron | 40.0% | |
| CTTGTTCCAAGCTTATCATC+AGG | - | chr1.1:23089296-23089315 | None:intergenic | 40.0% | |
| GACAAAAGAAGCAGGATTAG+AGG | - | chr1.1:23088901-23088920 | None:intergenic | 40.0% | |
| GAGAAAGGAACAGTTGAGTA+TGG | + | chr1.1:23089236-23089255 | MS.gene29247:CDS | 40.0% | |
| GCAGAATAATAACTGGCATG+AGG | + | chr1.1:23091438-23091457 | MS.gene29247:intron | 40.0% | |
| TCCGTTAAGACAAAAGAAGC+AGG | - | chr1.1:23088909-23088928 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAATGTTG+AGG | + | chr1.1:23089250-23089269 | MS.gene29247:CDS | 40.0% | |
| TGCTCAAACTCTTGTTCTGA+TGG | - | chr1.1:23088365-23088384 | None:intergenic | 40.0% | |
| TTAGCAGAACATGGAGAGAA+TGG | + | chr1.1:23089910-23089929 | MS.gene29247:CDS | 40.0% | |
| ! | ACATCATCACCGTGTTTCTA+GGG | + | chr1.1:23088514-23088533 | MS.gene29247:intron | 40.0% |
| ! | AGAAAGGTACGTAGGTTTCA+AGG | + | chr1.1:23090221-23090240 | MS.gene29247:intron | 40.0% |
| ! | AGTAAACGTAATGGAGACTG+TGG | - | chr1.1:23089513-23089532 | None:intergenic | 40.0% |
| ! | CTTTTGGTACTCATCACTGA+TGG | - | chr1.1:23091598-23091617 | None:intergenic | 40.0% |
| ! | GATCCAATTTGCCTTTTCCA+TGG | + | chr1.1:23090977-23090996 | MS.gene29247:CDS | 40.0% |
| ! | TGCTGCCAAAAGTTTTCAAC+TGG | + | chr1.1:23091171-23091190 | MS.gene29247:CDS | 40.0% |
| ! | TTTTGCATCGCCTTGTAAAC+CGG | - | chr1.1:23090003-23090022 | None:intergenic | 40.0% |
| !! | ACATAATGTGCCGGTTTACA+AGG | + | chr1.1:23089990-23090009 | MS.gene29247:CDS | 40.0% |
| !! | TTGATGATTGGTTTCCACTC+GGG | + | chr1.1:23090636-23090655 | MS.gene29247:CDS | 40.0% |
| AAGGTGATGACAAACTCTCC+CGG | - | chr1.1:23090027-23090046 | None:intergenic | 45.0% | |
| CAAGACATCAGGAGAGAACA+TGG | - | chr1.1:23089965-23089984 | None:intergenic | 45.0% | |
| GAACTTGAGTACTTCAGCGA+TGG | - | chr1.1:23088628-23088647 | None:intergenic | 45.0% | |
| GCAGGAACTGAAATTCTGCA+TGG | - | chr1.1:23090476-23090495 | None:intergenic | 45.0% | |
| GCTCCTGAGGCTTCTAAATA+TGG | + | chr1.1:23088410-23088429 | MS.gene29247:CDS | 45.0% | |
| GTAATTCCACCACTATGCAG+CGG | + | chr1.1:23090314-23090333 | MS.gene29247:intron | 45.0% | |
| TCTGCAGAAAATTGCTCCTG+AGG | + | chr1.1:23088397-23088416 | MS.gene29247:CDS | 45.0% | |
| TTACAAGGCGATGCAAAAGC+CGG | + | chr1.1:23090005-23090024 | MS.gene29247:CDS | 45.0% | |
| !! | TGATGATTGGTTTCCACTCG+GGG | + | chr1.1:23090637-23090656 | MS.gene29247:CDS | 45.0% |
| !!! | TAATTTTATTCAAAATTTTA+GGG | + | chr1.1:23089613-23089632 | MS.gene29247:intron | 5.0% |
| !!! | TTAATTTTATTCAAAATTTT+AGG | + | chr1.1:23089612-23089631 | MS.gene29247:intron | 5.0% |
| AATTGAGAGGCTGCAGAGCT+AGG | - | chr1.1:23089850-23089869 | None:intergenic | 50.0% | |
| GACATGCAGCCTCTGCTTTA+GGG | + | chr1.1:23090913-23090932 | MS.gene29247:CDS | 50.0% | |
| TACAAGGCGATGCAAAAGCC+GGG | + | chr1.1:23090006-23090025 | MS.gene29247:CDS | 50.0% | |
| TGACATGCAGCCTCTGCTTT+AGG | + | chr1.1:23090912-23090931 | MS.gene29247:CDS | 50.0% | |
| ! | CAAATCATAGCGTGCCACTG+TGG | - | chr1.1:23088730-23088749 | None:intergenic | 50.0% |
| !! | AGAAGAACTGTTGGCTCGCT+AGG | + | chr1.1:23091472-23091491 | MS.gene29247:CDS | 50.0% |
| !! | GCAGGATTAGAGGCATCGAT+TGG | - | chr1.1:23088891-23088910 | None:intergenic | 50.0% |
| TGCAGCGGCGTAGGAACAAT+AGG | + | chr1.1:23090329-23090348 | MS.gene29247:intron | 55.0% | |
| AATGGAGACTGTGGCAGCCG+CGG | - | chr1.1:23089504-23089523 | None:intergenic | 60.0% | |
| GCTCGATCCGACGTGTCTTC+AGG | - | chr1.1:23090785-23090804 | None:intergenic | 60.0% | |
| GTTCCTACGCCGCTGCATAG+TGG | - | chr1.1:23090326-23090345 | None:intergenic | 60.0% | |
| CCACCACTATGCAGCGGCGT+AGG | + | chr1.1:23090320-23090339 | MS.gene29247:intron | 65.0% | |
| CCTACGCCGCTGCATAGTGG+TGG | - | chr1.1:23090323-23090342 | None:intergenic | 65.0% | |
| TCACTAGCTGCAGCCCCGAG+TGG | - | chr1.1:23090653-23090672 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 23088326 | 23091693 | 23088326 | ID=MS.gene29247 |
| chr1.1 | mRNA | 23088326 | 23091693 | 23088326 | ID=MS.gene29247.t1;Parent=MS.gene29247 |
| chr1.1 | exon | 23088326 | 23088431 | 23088326 | ID=MS.gene29247.t1.exon1;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23088326 | 23088431 | 23088326 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| chr1.1 | exon | 23088868 | 23089024 | 23088868 | ID=MS.gene29247.t1.exon2;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23088868 | 23089024 | 23088868 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| chr1.1 | exon | 23089112 | 23089331 | 23089112 | ID=MS.gene29247.t1.exon3;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23089112 | 23089331 | 23089112 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| chr1.1 | exon | 23089495 | 23089548 | 23089495 | ID=MS.gene29247.t1.exon4;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23089495 | 23089548 | 23089495 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| chr1.1 | exon | 23089634 | 23089713 | 23089634 | ID=MS.gene29247.t1.exon5;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23089634 | 23089713 | 23089634 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| chr1.1 | exon | 23089801 | 23090078 | 23089801 | ID=MS.gene29247.t1.exon6;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23089801 | 23090078 | 23089801 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| chr1.1 | exon | 23090603 | 23090998 | 23090603 | ID=MS.gene29247.t1.exon7;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23090603 | 23090998 | 23090603 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| chr1.1 | exon | 23091095 | 23091270 | 23091095 | ID=MS.gene29247.t1.exon8;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23091095 | 23091270 | 23091095 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| chr1.1 | exon | 23091442 | 23091693 | 23091442 | ID=MS.gene29247.t1.exon9;Parent=MS.gene29247.t1 |
| chr1.1 | CDS | 23091442 | 23091693 | 23091442 | ID=cds.MS.gene29247.t1;Parent=MS.gene29247.t1 |
| Gene Sequence |
| Protein sequence |
