Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29249.t1 | RHN78369.1 | 86.4 | 588 | 59 | 1 | 1 | 588 | 18 | 584 | 1.50E-294 | 1021.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29249.t1 | Q336N8 | 51.1 | 501 | 240 | 3 | 13 | 511 | 88 | 585 | 2.1e-143 | 510.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29249.t1 | G7IBD2 | 86.4 | 588 | 59 | 1 | 1 | 588 | 1 | 567 | 1.1e-294 | 1021.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29249.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29249.t1 | MTR_1g038400 | 90.816 | 588 | 33 | 1 | 1 | 588 | 1 | 567 | 0.0 | 1086 |
| MS.gene29249.t1 | MTR_1g038370 | 74.527 | 581 | 121 | 4 | 22 | 597 | 2 | 560 | 0.0 | 888 |
| MS.gene29249.t1 | MTR_5g029370 | 56.198 | 484 | 211 | 1 | 10 | 493 | 71 | 553 | 0.0 | 591 |
| MS.gene29249.t1 | MTR_5g029370 | 56.198 | 484 | 211 | 1 | 10 | 493 | 71 | 553 | 0.0 | 591 |
| MS.gene29249.t1 | MTR_7g407000 | 79.167 | 144 | 12 | 2 | 201 | 343 | 28 | 154 | 4.96e-74 | 233 |
| MS.gene29249.t1 | MTR_3g075210 | 37.330 | 367 | 194 | 8 | 21 | 366 | 11 | 362 | 7.67e-66 | 234 |
| MS.gene29249.t1 | MTR_8g089260 | 37.209 | 387 | 170 | 9 | 24 | 345 | 29 | 407 | 9.53e-58 | 209 |
| MS.gene29249.t1 | MTR_1g078070 | 30.769 | 533 | 272 | 16 | 24 | 475 | 146 | 662 | 3.17e-54 | 199 |
| MS.gene29249.t1 | MTR_1g078070 | 30.769 | 533 | 272 | 16 | 24 | 475 | 146 | 662 | 8.70e-54 | 198 |
| MS.gene29249.t1 | MTR_2g047130 | 35.396 | 404 | 182 | 12 | 24 | 359 | 48 | 440 | 1.34e-52 | 194 |
| MS.gene29249.t1 | MTR_2g047130 | 35.396 | 404 | 182 | 12 | 24 | 359 | 45 | 437 | 1.77e-52 | 194 |
| MS.gene29249.t1 | MTR_5g010300 | 33.416 | 401 | 227 | 14 | 107 | 484 | 302 | 685 | 7.84e-51 | 190 |
| MS.gene29249.t1 | MTR_5g010300 | 34.400 | 375 | 207 | 13 | 133 | 484 | 327 | 685 | 8.66e-51 | 189 |
| MS.gene29249.t1 | MTR_5g010300 | 34.400 | 375 | 207 | 13 | 133 | 484 | 327 | 685 | 9.67e-51 | 189 |
| MS.gene29249.t1 | MTR_5g010300 | 38.644 | 295 | 152 | 8 | 107 | 382 | 302 | 586 | 1.36e-49 | 186 |
| MS.gene29249.t1 | MTR_1g094740 | 43.085 | 188 | 103 | 1 | 172 | 359 | 291 | 474 | 4.73e-49 | 184 |
| MS.gene29249.t1 | MTR_7g097070 | 29.808 | 312 | 202 | 9 | 176 | 476 | 338 | 643 | 3.69e-28 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29249.t1 | AT5G46910 | 53.049 | 492 | 230 | 1 | 2 | 493 | 77 | 567 | 0.0 | 570 |
| MS.gene29249.t1 | AT5G46910 | 53.049 | 492 | 230 | 1 | 2 | 493 | 77 | 567 | 0.0 | 569 |
| MS.gene29249.t1 | AT2G34880 | 32.068 | 527 | 277 | 18 | 25 | 483 | 58 | 571 | 6.51e-59 | 211 |
| MS.gene29249.t1 | AT3G48430 | 33.684 | 380 | 210 | 7 | 17 | 359 | 9 | 383 | 1.04e-57 | 210 |
| MS.gene29249.t1 | AT4G20400 | 27.110 | 616 | 351 | 15 | 24 | 551 | 52 | 657 | 1.05e-57 | 209 |
| MS.gene29249.t1 | AT1G63490 | 42.066 | 271 | 131 | 6 | 107 | 360 | 46 | 307 | 3.23e-57 | 208 |
| MS.gene29249.t1 | AT1G63490 | 42.066 | 271 | 131 | 6 | 107 | 360 | 299 | 560 | 5.37e-57 | 208 |
| MS.gene29249.t1 | AT1G63490 | 42.066 | 271 | 131 | 6 | 107 | 360 | 299 | 560 | 5.57e-57 | 208 |
| MS.gene29249.t1 | AT1G30810 | 30.612 | 539 | 278 | 16 | 24 | 483 | 55 | 576 | 8.27e-56 | 202 |
| MS.gene29249.t1 | AT1G30810 | 30.612 | 539 | 278 | 16 | 24 | 483 | 55 | 576 | 8.27e-56 | 202 |
| MS.gene29249.t1 | AT1G30810 | 30.612 | 539 | 278 | 16 | 24 | 483 | 55 | 576 | 8.27e-56 | 202 |
| MS.gene29249.t1 | AT4G20400 | 27.483 | 604 | 340 | 15 | 36 | 551 | 7 | 600 | 1.79e-54 | 199 |
| MS.gene29249.t1 | AT1G08620 | 33.810 | 420 | 192 | 12 | 25 | 369 | 157 | 565 | 1.59e-52 | 194 |
| MS.gene29249.t1 | AT1G08620 | 33.810 | 420 | 192 | 12 | 25 | 369 | 143 | 551 | 2.11e-52 | 194 |
| MS.gene29249.t1 | AT1G08620 | 33.810 | 420 | 192 | 12 | 25 | 369 | 143 | 551 | 2.11e-52 | 194 |
| MS.gene29249.t1 | AT1G08620 | 33.810 | 420 | 192 | 12 | 25 | 369 | 143 | 551 | 2.11e-52 | 194 |
| MS.gene29249.t1 | AT5G04240 | 45.745 | 188 | 98 | 1 | 172 | 359 | 259 | 442 | 5.67e-50 | 187 |
| MS.gene29249.t1 | AT2G38950 | 28.871 | 381 | 214 | 12 | 22 | 359 | 102 | 468 | 2.02e-33 | 136 |
| MS.gene29249.t1 | AT1G63490 | 51.724 | 87 | 42 | 0 | 274 | 360 | 15 | 101 | 4.22e-24 | 108 |
Find 93 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCCATTCTACAGTCTTTC+TGG | 0.125843 | 1.1:+23066869 | MS.gene29249:CDS |
| TTGATTTGGATGATCTAAAT+TGG | 0.198966 | 1.1:+23064539 | MS.gene29249:CDS |
| TGTCTTAATGAAAGAGAAAA+AGG | 0.225632 | 1.1:+23064923 | MS.gene29249:CDS |
| ACTCAGGTGGAAATAAAATT+TGG | 0.250671 | 1.1:+23065866 | MS.gene29249:CDS |
| TTCTGAACTGCAAAATTTGT+TGG | 0.268593 | 1.1:-23065160 | None:intergenic |
| TTGGTGATTGGTTTCCATTT+GGG | 0.283394 | 1.1:+23066701 | MS.gene29249:CDS |
| CAAATCGAGTAAATTTGATT+TGG | 0.293057 | 1.1:+23064525 | MS.gene29249:CDS |
| AAACAATTGTACAGCCTCTT+AGG | 0.293247 | 1.1:+23064958 | MS.gene29249:CDS |
| TCCTGCAATATCTTCTGTTT+TGG | 0.293249 | 1.1:+23067732 | MS.gene29249:CDS |
| AATCCAGCATGATATGAATT+AGG | 0.298533 | 1.1:-23066099 | None:intergenic |
| GGATGGTATACCGGACATTC+TGG | 0.308105 | 1.1:-23064574 | None:intergenic |
| GCTCCCGAGGCTTCTAAATA+TGG | 0.309276 | 1.1:+23064643 | MS.gene29249:CDS |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1.1:-23066763 | None:intergenic |
| GAGAAGGGAACAGTTGAGTA+TGG | 0.324983 | 1.1:+23065237 | MS.gene29249:CDS |
| ACTGAAAGCAGAATGATAAT+TGG | 0.325763 | 1.1:+23067488 | MS.gene29249:intron |
| ATAAAGGGTTCGCGGTCTTT+TGG | 0.338413 | 1.1:-23067671 | None:intergenic |
| ATTGGTGATTGGTTTCCATT+TGG | 0.339040 | 1.1:+23066700 | MS.gene29249:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1.1:-23066772 | None:intergenic |
| GAAGGATTAGAGGCACTAAT+TGG | 0.346599 | 1.1:-23064894 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.347643 | 1.1:-23067048 | None:intergenic |
| TATATCCTTCTCATTCCATT+TGG | 0.357030 | 1.1:-23064985 | None:intergenic |
| CTCATTCCAAGTTCATCATC+AGG | 0.362352 | 1.1:-23065294 | None:intergenic |
| AGCTCTTCAAATACATCATT+AGG | 0.370354 | 1.1:+23066952 | MS.gene29249:CDS |
| GACAAAATCAGAAGGATTAG+AGG | 0.370940 | 1.1:-23064904 | None:intergenic |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1.1:+23066689 | MS.gene29249:CDS |
| AATGAGCAAATTCAATTTGA+AGG | 0.382800 | 1.1:+23065311 | MS.gene29249:CDS |
| GACGCATTCAATCATGCTAT+AGG | 0.420173 | 1.1:-23067295 | None:intergenic |
| GAAGAACTGTCAACTCTGTA+AGG | 0.420264 | 1.1:+23067530 | MS.gene29249:CDS |
| ACTGCAAAATTTGTTGGAAA+AGG | 0.420420 | 1.1:-23065154 | None:intergenic |
| TCATGTTGTAACAAGACATT+AGG | 0.439737 | 1.1:-23066024 | None:intergenic |
| TTGCTTGCTGCAGCCCCAAA+TGG | 0.446449 | 1.1:-23066715 | None:intergenic |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1.1:+23066682 | MS.gene29249:CDS |
| TTACCTTCCTCTCTTAGAAA+AGG | 0.456944 | 1.1:-23065012 | None:intergenic |
| TGCTCAAATTCTTGTTCTGA+TGG | 0.458499 | 1.1:-23064595 | None:intergenic |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1.1:+23066759 | MS.gene29249:CDS |
| TGTTCTGATGGATGGTATAC+CGG | 0.459617 | 1.1:-23064583 | None:intergenic |
| CTGATCCTATGCTTTACATT+GGG | 0.461409 | 1.1:+23065692 | MS.gene29249:CDS |
| TTCCATTTGGAAAGCCTAAG+AGG | 0.464543 | 1.1:-23064972 | None:intergenic |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1.1:+23066057 | MS.gene29249:CDS |
| TTTCCTAATTCATATCATGC+TGG | 0.481919 | 1.1:+23066096 | MS.gene29249:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.488180 | 1.1:+23065691 | MS.gene29249:CDS |
| ACATGATGTGCCAGTTTACA+AGG | 0.492030 | 1.1:+23066041 | MS.gene29249:CDS |
| CAAATTCTTGTTCTGATGGA+TGG | 0.494920 | 1.1:-23064591 | None:intergenic |
| ATTTACATATCAAGAATTTG+AGG | 0.498743 | 1.1:+23065116 | MS.gene29249:CDS |
| TGACATGCAGCCTCTGCCAT+AGG | 0.501176 | 1.1:+23066980 | MS.gene29249:CDS |
| ACCAAAACAGAAGATATTGC+AGG | 0.502442 | 1.1:-23067733 | None:intergenic |
| AATTGAGAGGCTGCAGAGCT+AGG | 0.502653 | 1.1:-23065898 | None:intergenic |
| AGCCTCTTAGGCTTTCCAAA+TGG | 0.506480 | 1.1:+23064970 | MS.gene29249:CDS |
| AAACATGATTCCAGAATGTC+CGG | 0.512209 | 1.1:+23064564 | MS.gene29249:CDS |
| TGGTGATTGGTTTCCATTTG+GGG | 0.516058 | 1.1:+23066702 | MS.gene29249:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1.1:+23065716 | MS.gene29249:CDS |
| TAGAAGATCACTATTTGTAC+AGG | 0.521776 | 1.1:+23065743 | MS.gene29249:CDS |
| GGTGGAAATAAAATTTGGTA+TGG | 0.524966 | 1.1:+23065871 | MS.gene29249:CDS |
| TGTGATCCTGATGATGAACT+TGG | 0.525005 | 1.1:+23065288 | MS.gene29249:CDS |
| CGAAATGATACATGGAGAGA+AGG | 0.529280 | 1.1:+23065221 | MS.gene29249:CDS |
| CTCAAATTATAAAGGGTTCG+CGG | 0.531379 | 1.1:-23067679 | None:intergenic |
| TGTTGTAACAAGACATTAGG+AGG | 0.534027 | 1.1:-23066021 | None:intergenic |
| TTCATTAAGACAAAATCAGA+AGG | 0.538081 | 1.1:-23064912 | None:intergenic |
| TTAGCAGAACATGGAGAGAA+TGG | 0.538483 | 1.1:+23065961 | MS.gene29249:CDS |
| AAGCTACATAACAATCCCTA+TGG | 0.550057 | 1.1:-23066996 | None:intergenic |
| AAGGTGATGACAAACTCTCC+TGG | 0.552268 | 1.1:-23066075 | None:intergenic |
| GAGTATGGAGTCAACATTGA+GGG | 0.553863 | 1.1:+23065252 | MS.gene29249:CDS |
| ATGGAAAAGGCAAATTGGAT+AGG | 0.554570 | 1.1:-23067043 | None:intergenic |
| GACATGCAGCCTCTGCCATA+GGG | 0.557662 | 1.1:+23066981 | MS.gene29249:CDS |
| GTACCATATTTAGAAGCCTC+GGG | 0.562686 | 1.1:-23064646 | None:intergenic |
| ATAAATTATCATCACTCAGG+TGG | 0.565750 | 1.1:+23065853 | MS.gene29249:CDS |
| CAAGACATTAGGAGGGAACA+TGG | 0.568622 | 1.1:-23066013 | None:intergenic |
| CAAAAGCAAACTCGAAGTCA+TGG | 0.572919 | 1.1:+23066837 | MS.gene29249:CDS |
| CGTACCATATTTAGAAGCCT+CGG | 0.575055 | 1.1:-23064647 | None:intergenic |
| TACTTCTCCATCAGTGATGA+GGG | 0.579966 | 1.1:+23067648 | MS.gene29249:CDS |
| TTCTGGCACGAAATGATACA+TGG | 0.581975 | 1.1:+23065213 | MS.gene29249:CDS |
| GAAATGATACATGGAGAGAA+GGG | 0.582021 | 1.1:+23065222 | MS.gene29249:CDS |
| CATAACAATCCCTATGGCAG+AGG | 0.587190 | 1.1:-23066990 | None:intergenic |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1.1:+23066108 | MS.gene29249:CDS |
| TCTACAGAAAATTGCTCCCG+AGG | 0.589922 | 1.1:+23064630 | MS.gene29249:CDS |
| AAGAACTGTCAACTCTGTAA+GGG | 0.595848 | 1.1:+23067531 | MS.gene29249:CDS |
| AACAAAATCTTAGCAGAACA+TGG | 0.596081 | 1.1:+23065952 | MS.gene29249:CDS |
| AGTATAAATTATCATCACTC+AGG | 0.598943 | 1.1:+23065850 | MS.gene29249:intron |
| ATACTTCTCCATCAGTGATG+AGG | 0.601559 | 1.1:+23067647 | MS.gene29249:CDS |
| GCTTTCCAAATGGAATGAGA+AGG | 0.605970 | 1.1:+23064980 | MS.gene29249:CDS |
| ATTTGAGGCTATAGCAAACA+AGG | 0.606737 | 1.1:+23065131 | MS.gene29249:CDS |
| ATGCCAGAAAGACTGTAGAA+TGG | 0.611170 | 1.1:-23066872 | None:intergenic |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1.1:-23065697 | None:intergenic |
| TAAACTGAAAACAAGAGTCA+CGG | 0.629474 | 1.1:+23067564 | MS.gene29249:CDS |
| CCTCTGTCAACTAAACGCAA+TGG | 0.632529 | 1.1:-23065559 | None:intergenic |
| AAAAGAATCAGAAGATGACA+AGG | 0.635509 | 1.1:+23067608 | MS.gene29249:CDS |
| CCATTGCGTTTAGTTGACAG+AGG | 0.635713 | 1.1:+23065559 | MS.gene29249:CDS |
| AGCATGATATGAATTAGGAA+AGG | 0.636839 | 1.1:-23066094 | None:intergenic |
| GCAGAATGATAATTGGCATG+AGG | 0.637120 | 1.1:+23067495 | MS.gene29249:intron |
| TGAGTATGGAGTCAACATTG+AGG | 0.665976 | 1.1:+23065251 | MS.gene29249:CDS |
| GTTGTAACAAGACATTAGGA+GGG | 0.697642 | 1.1:-23066020 | None:intergenic |
| ACTAAACGCAATGGAGACTG+CGG | 0.718204 | 1.1:-23065550 | None:intergenic |
| TGATGTGCCAGTTTACAAGG+CGG | 0.788729 | 1.1:+23066044 | MS.gene29249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAAATAAGCCT+CGG | - | chr1.1:23064833-23064852 | None:intergenic | 15.0% |
| !! | AATATGTTAATAGAGAAAAA+TGG | - | chr1.1:23065365-23065384 | None:intergenic | 15.0% |
| !! | AATTTATACTGCAAAAAATA+CGG | - | chr1.1:23065840-23065859 | None:intergenic | 15.0% |
| !! | GATGAAAAAATAAACTAATT+TGG | + | chr1.1:23065068-23065087 | MS.gene29249:intron | 15.0% |
| !! | TTTATTCTTGATAGATAAAT+TGG | + | chr1.1:23067111-23067130 | MS.gene29249:intron | 15.0% |
| !!! | AATTCTGCTTTAAAATTTTA+GGG | + | chr1.1:23065664-23065683 | MS.gene29249:intron | 15.0% |
| !!! | AGTTTATTTTTTCATCATTT+AGG | - | chr1.1:23065064-23065083 | None:intergenic | 15.0% |
| !!! | ATGTTTTCTCAAATTATAAA+GGG | - | chr1.1:23067689-23067708 | None:intergenic | 15.0% |
| !!! | TAATTCTGCTTTAAAATTTT+AGG | + | chr1.1:23065663-23065682 | MS.gene29249:intron | 15.0% |
| !!! | TTTCATTTGATTTTAGAATT+TGG | + | chr1.1:23065519-23065538 | MS.gene29249:intron | 15.0% |
| !! | AATTATCAAATAGACTAATG+AGG | - | chr1.1:23067076-23067095 | None:intergenic | 20.0% |
| !! | ATTAAATTCAAATGCAAACT+CGG | - | chr1.1:23065441-23065460 | None:intergenic | 20.0% |
| !! | ATTTACATATCAAGAATTTG+AGG | + | chr1.1:23065116-23065135 | MS.gene29249:CDS | 20.0% |
| !! | TTTAGTATGGTTATCAAATA+TGG | + | chr1.1:23064786-23064805 | MS.gene29249:intron | 20.0% |
| !!! | ACATAAGTATTTGAAATATC+AGG | - | chr1.1:23066554-23066573 | None:intergenic | 20.0% |
| !!! | AGTTAAAACTTGTTTAATGA+CGG | - | chr1.1:23064730-23064749 | None:intergenic | 20.0% |
| !!! | ATTTTCTGTAGATAAATCAA+AGG | - | chr1.1:23064622-23064641 | None:intergenic | 20.0% |
| !!! | CATGTTTTCTCAAATTATAA+AGG | - | chr1.1:23067690-23067709 | None:intergenic | 20.0% |
| !!! | TTCTTGATATGTAAATTTTC+TGG | - | chr1.1:23065112-23065131 | None:intergenic | 20.0% |
| !!! | TTGAAGATTTTTAGAATCAT+TGG | - | chr1.1:23065415-23065434 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTTGTTGAGTTT+AGG | + | chr1.1:23066646-23066665 | MS.gene29249:intron | 20.0% |
| ! | AAATGATGCAACATTTAGTA+TGG | + | chr1.1:23064773-23064792 | MS.gene29249:intron | 25.0% |
| ! | AATGAGCAAATTCAATTTGA+AGG | + | chr1.1:23065311-23065330 | MS.gene29249:CDS | 25.0% |
| ! | AGTATAAATTATCATCACTC+AGG | + | chr1.1:23065850-23065869 | MS.gene29249:intron | 25.0% |
| ! | ATAATAACTTAATCCAGACT+AGG | - | chr1.1:23065613-23065632 | None:intergenic | 25.0% |
| ! | ATCCAAAAGTAAACAGATTA+CGG | - | chr1.1:23066458-23066477 | None:intergenic | 25.0% |
| ! | CAAATCGAGTAAATTTGATT+TGG | + | chr1.1:23064525-23064544 | MS.gene29249:CDS | 25.0% |
| ! | CATGTCATTCTTCTTAAAAA+CGG | - | chr1.1:23067196-23067215 | None:intergenic | 25.0% |
| ! | TAGATATCGAAAAAACATTC+TGG | + | chr1.1:23065196-23065215 | MS.gene29249:CDS | 25.0% |
| ! | TGATTTAGTCATGTTTATGT+TGG | + | chr1.1:23066240-23066259 | MS.gene29249:intron | 25.0% |
| ! | TGTCTTAATGAAAGAGAAAA+AGG | + | chr1.1:23064923-23064942 | MS.gene29249:CDS | 25.0% |
| ! | TTCATTAAGACAAAATCAGA+AGG | - | chr1.1:23064915-23064934 | None:intergenic | 25.0% |
| !! | TAATTGAAAGGTATGATTCA+AGG | + | chr1.1:23066305-23066324 | MS.gene29249:intron | 25.0% |
| !! | TTTACATTTTGCACTAGATA+GGG | - | chr1.1:23066611-23066630 | None:intergenic | 25.0% |
| !! | TTTTACCTGTTGAAAACTTT+TGG | - | chr1.1:23067238-23067257 | None:intergenic | 25.0% |
| !! | TTTTTCGTTTTGCATATTTC+AGG | + | chr1.1:23064852-23064871 | MS.gene29249:intron | 25.0% |
| !!! | ATAATAACCTTTTCTAAGAG+AGG | + | chr1.1:23065005-23065024 | MS.gene29249:CDS | 25.0% |
| !!! | ATTTTTTTCCATTTTTTCCG+AGG | + | chr1.1:23064813-23064832 | MS.gene29249:intron | 25.0% |
| !!! | TTGATTTGGATGATCTAAAT+TGG | + | chr1.1:23064539-23064558 | MS.gene29249:CDS | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1.1:23065993-23066012 | None:intergenic | 25.0% |
| AAAAGAATCAGAAGATGACA+AGG | + | chr1.1:23067608-23067627 | MS.gene29249:CDS | 30.0% | |
| AAAATAAGCCTCGGAAAAAA+TGG | - | chr1.1:23064824-23064843 | None:intergenic | 30.0% | |
| AAAATCCTAGGCTTGAAAAA+TGG | + | chr1.1:23066371-23066390 | MS.gene29249:intron | 30.0% | |
| AACAAAATCTTAGCAGAACA+TGG | + | chr1.1:23065952-23065971 | MS.gene29249:CDS | 30.0% | |
| AATCCAGCATGATATGAATT+AGG | - | chr1.1:23066102-23066121 | None:intergenic | 30.0% | |
| ACAAGTAATCTGAAAATCCT+AGG | + | chr1.1:23066359-23066378 | MS.gene29249:intron | 30.0% | |
| ACTCAGGTGGAAATAAAATT+TGG | + | chr1.1:23065866-23065885 | MS.gene29249:CDS | 30.0% | |
| ACTGAAAGCAGAATGATAAT+TGG | + | chr1.1:23067488-23067507 | MS.gene29249:intron | 30.0% | |
| ACTTATGTTGCATACTTGTT+CGG | + | chr1.1:23066566-23066585 | MS.gene29249:intron | 30.0% | |
| AGCATGATATGAATTAGGAA+AGG | - | chr1.1:23066097-23066116 | None:intergenic | 30.0% | |
| AGCTCTTCAAATACATCATT+AGG | + | chr1.1:23066952-23066971 | MS.gene29249:CDS | 30.0% | |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1.1:23066766-23066785 | None:intergenic | 30.0% | |
| ATAAATTATCATCACTCAGG+TGG | + | chr1.1:23065853-23065872 | MS.gene29249:CDS | 30.0% | |
| CTCTATATGCACAAACTATT+AGG | - | chr1.1:23066493-23066512 | None:intergenic | 30.0% | |
| GAACAGGCAATATTTGATTA+TGG | - | chr1.1:23066434-23066453 | None:intergenic | 30.0% | |
| GGTGGAAATAAAATTTGGTA+TGG | + | chr1.1:23065871-23065890 | MS.gene29249:CDS | 30.0% | |
| TAAACTGAAAACAAGAGTCA+CGG | + | chr1.1:23067564-23067583 | MS.gene29249:CDS | 30.0% | |
| TACTGCATTACTTCATCTTT+AGG | + | chr1.1:23067417-23067436 | MS.gene29249:intron | 30.0% | |
| TAGAAGATCACTATTTGTAC+AGG | + | chr1.1:23065743-23065762 | MS.gene29249:CDS | 30.0% | |
| TATATCCTTCTCATTCCATT+TGG | - | chr1.1:23064988-23065007 | None:intergenic | 30.0% | |
| TCAAGGTTAATCTTGTAAAC+TGG | + | chr1.1:23066322-23066341 | MS.gene29249:intron | 30.0% | |
| TCATGTTGTAACAAGACATT+AGG | - | chr1.1:23066027-23066046 | None:intergenic | 30.0% | |
| TCTAGTGCAAAATGTAAAGA+TGG | + | chr1.1:23066613-23066632 | MS.gene29249:intron | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.1:23066775-23066794 | None:intergenic | 30.0% | |
| TTCTGAACTGCAAAATTTGT+TGG | - | chr1.1:23065163-23065182 | None:intergenic | 30.0% | |
| TTTCCTAATTCATATCATGC+TGG | + | chr1.1:23066096-23066115 | MS.gene29249:CDS | 30.0% | |
| ! | AGACGATTTTCTTTTCATCA+CGG | + | chr1.1:23064687-23064706 | MS.gene29249:intron | 30.0% |
| ! | CTTTACATTTTGCACTAGAT+AGG | - | chr1.1:23066612-23066631 | None:intergenic | 30.0% |
| ! | TCCAAAAATGGTTTTCTTAC+AGG | - | chr1.1:23065589-23065608 | None:intergenic | 30.0% |
| ! | TCCTGTAAGAAAACCATTTT+TGG | + | chr1.1:23065585-23065604 | MS.gene29249:intron | 30.0% |
| ! | TTTGTAACTTCTGACTTTTG+AGG | - | chr1.1:23066821-23066840 | None:intergenic | 30.0% |
| !! | AATCTGTTTACTTTTGGATC+AGG | + | chr1.1:23066459-23066478 | MS.gene29249:intron | 30.0% |
| !! | ACTGCAAAATTTGTTGGAAA+AGG | - | chr1.1:23065157-23065176 | None:intergenic | 30.0% |
| !! | ATCTGTTTACTTTTGGATCA+GGG | + | chr1.1:23066460-23066479 | MS.gene29249:intron | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1.1:23066689-23066708 | MS.gene29249:CDS | 30.0% |
| !!! | GCATCATTTTTTTATGCATG+AGG | - | chr1.1:23064762-23064781 | None:intergenic | 30.0% |
| !!! | TTGAGTTTAGGTTTTAACTG+TGG | + | chr1.1:23066658-23066677 | MS.gene29249:intron | 30.0% |
| !!! | TTTGATTTTAGAATTTGGCG+CGG | + | chr1.1:23065524-23065543 | MS.gene29249:intron | 30.0% |
| AAACAATTGTACAGCCTCTT+AGG | + | chr1.1:23064958-23064977 | MS.gene29249:CDS | 35.0% | |
| AAACATGATTCCAGAATGTC+CGG | + | chr1.1:23064564-23064583 | MS.gene29249:CDS | 35.0% | |
| AAGAACTGTCAACTCTGTAA+GGG | + | chr1.1:23067531-23067550 | MS.gene29249:CDS | 35.0% | |
| AAGCTACATAACAATCCCTA+TGG | - | chr1.1:23066999-23067018 | None:intergenic | 35.0% | |
| ACCAAAACAGAAGATATTGC+AGG | - | chr1.1:23067736-23067755 | None:intergenic | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1.1:23065691-23065710 | MS.gene29249:CDS | 35.0% | |
| AGATCGCTCGAATAATTGAA+AGG | + | chr1.1:23066293-23066312 | MS.gene29249:intron | 35.0% | |
| ATGGAAAAGGCAAATTGGAT+AGG | - | chr1.1:23067046-23067065 | None:intergenic | 35.0% | |
| CAAATTCTTGTTCTGATGGA+TGG | - | chr1.1:23064594-23064613 | None:intergenic | 35.0% | |
| CTCAAATTATAAAGGGTTCG+CGG | - | chr1.1:23067682-23067701 | None:intergenic | 35.0% | |
| CTCATAGTTTACGGATAAGT+AGG | + | chr1.1:23066269-23066288 | MS.gene29249:intron | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1.1:23065692-23065711 | MS.gene29249:CDS | 35.0% | |
| GAAATGATACATGGAGAGAA+GGG | + | chr1.1:23065222-23065241 | MS.gene29249:CDS | 35.0% | |
| GACAAAATCAGAAGGATTAG+AGG | - | chr1.1:23064907-23064926 | None:intergenic | 35.0% | |
| GCTACCTATAATTCCATATG+AGG | + | chr1.1:23066759-23066778 | MS.gene29249:CDS | 35.0% | |
| GTTGTAACAAGACATTAGGA+GGG | - | chr1.1:23066023-23066042 | None:intergenic | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | + | chr1.1:23066108-23066127 | MS.gene29249:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1.1:23065716-23065735 | MS.gene29249:CDS | 35.0% | |
| TGCTCAAATTCTTGTTCTGA+TGG | - | chr1.1:23064598-23064617 | None:intergenic | 35.0% | |
| TGGCTATTGCTCATAGTTTA+CGG | + | chr1.1:23066260-23066279 | MS.gene29249:intron | 35.0% | |
| TGTTGTAACAAGACATTAGG+AGG | - | chr1.1:23066024-23066043 | None:intergenic | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.1:23067051-23067070 | None:intergenic | 35.0% | |
| TTACCTTCCTCTCTTAGAAA+AGG | - | chr1.1:23065015-23065034 | None:intergenic | 35.0% | |
| ! | AGACTAATGAGGTTTTACCA+TGG | - | chr1.1:23067065-23067084 | None:intergenic | 35.0% |
| ! | ATGAGGTTTTACCATGGAAA+AGG | - | chr1.1:23067059-23067078 | None:intergenic | 35.0% |
| ! | ATTTGAGGCTATAGCAAACA+AGG | + | chr1.1:23065131-23065150 | MS.gene29249:CDS | 35.0% |
| ! | ATTTTGCACTAGATAGGGAT+AGG | - | chr1.1:23066606-23066625 | None:intergenic | 35.0% |
| ! | CTCCGTAATCTGTTTACTTT+TGG | + | chr1.1:23066453-23066472 | MS.gene29249:intron | 35.0% |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1.1:23066682-23066701 | MS.gene29249:CDS | 35.0% |
| ! | GACAGTCTTTTCAAATTGAG+AGG | - | chr1.1:23065914-23065933 | None:intergenic | 35.0% |
| ! | TATCCAATTTGCCTTTTCCA+TGG | + | chr1.1:23067045-23067064 | MS.gene29249:CDS | 35.0% |
| ! | TCCTGCAATATCTTCTGTTT+TGG | + | chr1.1:23067732-23067751 | MS.gene29249:CDS | 35.0% |
| ! | TGCCAAAAACTTGCTTATGT+GGG | + | chr1.1:23067160-23067179 | MS.gene29249:CDS | 35.0% |
| !! | ATTGGTGATTGGTTTCCATT+TGG | + | chr1.1:23066700-23066719 | MS.gene29249:CDS | 35.0% |
| !! | TAACCTTTTCTAAGAGAGGA+AGG | + | chr1.1:23065009-23065028 | MS.gene29249:CDS | 35.0% |
| !! | TTGGTGATTGGTTTCCATTT+GGG | + | chr1.1:23066701-23066720 | MS.gene29249:CDS | 35.0% |
| ACATGATGTGCCAGTTTACA+AGG | + | chr1.1:23066041-23066060 | MS.gene29249:CDS | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1.1:23065700-23065719 | None:intergenic | 40.0% | |
| ATACTTCTCCATCAGTGATG+AGG | + | chr1.1:23067647-23067666 | MS.gene29249:CDS | 40.0% | |
| ATGCCAGAAAGACTGTAGAA+TGG | - | chr1.1:23066875-23066894 | None:intergenic | 40.0% | |
| CAAAAGCAAACTCGAAGTCA+TGG | + | chr1.1:23066837-23066856 | MS.gene29249:CDS | 40.0% | |
| CCTAGGCTTGAAAAATGGAA+AGG | + | chr1.1:23066376-23066395 | MS.gene29249:intron | 40.0% | |
| CGAAATGATACATGGAGAGA+AGG | + | chr1.1:23065221-23065240 | MS.gene29249:CDS | 40.0% | |
| CGTACCATATTTAGAAGCCT+CGG | - | chr1.1:23064650-23064669 | None:intergenic | 40.0% | |
| CTCATTCCAAGTTCATCATC+AGG | - | chr1.1:23065297-23065316 | None:intergenic | 40.0% | |
| GAAGAACTGTCAACTCTGTA+AGG | + | chr1.1:23067530-23067549 | MS.gene29249:CDS | 40.0% | |
| GACGCATTCAATCATGCTAT+AGG | - | chr1.1:23067298-23067317 | None:intergenic | 40.0% | |
| GAGTATGGAGTCAACATTGA+GGG | + | chr1.1:23065252-23065271 | MS.gene29249:CDS | 40.0% | |
| GCAGAATGATAATTGGCATG+AGG | + | chr1.1:23067495-23067514 | MS.gene29249:intron | 40.0% | |
| GCTTTCCAAATGGAATGAGA+AGG | + | chr1.1:23064980-23064999 | MS.gene29249:CDS | 40.0% | |
| GTAAACAGATTACGGAGAAC+AGG | - | chr1.1:23066450-23066469 | None:intergenic | 40.0% | |
| GTACCATATTTAGAAGCCTC+GGG | - | chr1.1:23064649-23064668 | None:intergenic | 40.0% | |
| TACTTCTCCATCAGTGATGA+GGG | + | chr1.1:23067648-23067667 | MS.gene29249:CDS | 40.0% | |
| TCCAGACTAGGTTCCAAAAA+TGG | - | chr1.1:23065601-23065620 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAACATTG+AGG | + | chr1.1:23065251-23065270 | MS.gene29249:CDS | 40.0% | |
| TTAGCAGAACATGGAGAGAA+TGG | + | chr1.1:23065961-23065980 | MS.gene29249:CDS | 40.0% | |
| TTCCATTTGGAAAGCCTAAG+AGG | - | chr1.1:23064975-23064994 | None:intergenic | 40.0% | |
| TTCTGGCACGAAATGATACA+TGG | + | chr1.1:23065213-23065232 | MS.gene29249:CDS | 40.0% | |
| ! | CAAAAACTTGCTTATGTGGG+GGG | + | chr1.1:23067163-23067182 | MS.gene29249:CDS | 40.0% |
| ! | CCAAAAACTTGCTTATGTGG+GGG | + | chr1.1:23067162-23067181 | MS.gene29249:CDS | 40.0% |
| ! | GCCAAAAACTTGCTTATGTG+GGG | + | chr1.1:23067161-23067180 | MS.gene29249:CDS | 40.0% |
| ! | GTGCCAAAAACTTGCTTATG+TGG | + | chr1.1:23067159-23067178 | MS.gene29249:CDS | 40.0% |
| ! | TGCTGCCAAAAGTTTTCAAC+AGG | + | chr1.1:23067230-23067249 | MS.gene29249:CDS | 40.0% |
| ! | TGTGATCCTGATGATGAACT+TGG | + | chr1.1:23065288-23065307 | MS.gene29249:CDS | 40.0% |
| ! | TGTTCTGATGGATGGTATAC+CGG | - | chr1.1:23064586-23064605 | None:intergenic | 40.0% |
| !! | GAAGGATTAGAGGCACTAAT+TGG | - | chr1.1:23064897-23064916 | None:intergenic | 40.0% |
| !! | TGGTGATTGGTTTCCATTTG+GGG | + | chr1.1:23066702-23066721 | MS.gene29249:CDS | 40.0% |
| !!! | ACCATTTTTGGAACCTAGTC+TGG | + | chr1.1:23065597-23065616 | MS.gene29249:intron | 40.0% |
| !!! | CCTTTCCATTTTTCAAGCCT+AGG | - | chr1.1:23066379-23066398 | None:intergenic | 40.0% |
| AAGGTGATGACAAACTCTCC+TGG | - | chr1.1:23066078-23066097 | None:intergenic | 45.0% | |
| ACTAAACGCAATGGAGACTG+CGG | - | chr1.1:23065553-23065572 | None:intergenic | 45.0% | |
| AGCCTCTTAGGCTTTCCAAA+TGG | + | chr1.1:23064970-23064989 | MS.gene29249:CDS | 45.0% | |
| CAAGACATTAGGAGGGAACA+TGG | - | chr1.1:23066016-23066035 | None:intergenic | 45.0% | |
| CATAACAATCCCTATGGCAG+AGG | - | chr1.1:23066993-23067012 | None:intergenic | 45.0% | |
| CCATTGCGTTTAGTTGACAG+AGG | + | chr1.1:23065559-23065578 | MS.gene29249:CDS | 45.0% | |
| CCTCTGTCAACTAAACGCAA+TGG | - | chr1.1:23065562-23065581 | None:intergenic | 45.0% | |
| GAGAAGGGAACAGTTGAGTA+TGG | + | chr1.1:23065237-23065256 | MS.gene29249:CDS | 45.0% | |
| TCTACAGAAAATTGCTCCCG+AGG | + | chr1.1:23064630-23064649 | MS.gene29249:CDS | 45.0% | |
| TGATGTGCCAGTTTACAAGG+CGG | + | chr1.1:23066044-23066063 | MS.gene29249:CDS | 45.0% | |
| ! | ATAAAGGGTTCGCGGTCTTT+TGG | - | chr1.1:23067674-23067693 | None:intergenic | 45.0% |
| ! | CCCCCACATAAGCAAGTTTT+TGG | - | chr1.1:23067165-23067184 | None:intergenic | 45.0% |
| ! | GTGCCATTCTACAGTCTTTC+TGG | + | chr1.1:23066869-23066888 | MS.gene29249:CDS | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+TGG | - | chr1.1:23066054-23066073 | None:intergenic | 45.0% |
| AATTGAGAGGCTGCAGAGCT+AGG | - | chr1.1:23065901-23065920 | None:intergenic | 50.0% | |
| CTTCAGCCACTAGGCACAAT+TGG | + | chr1.1:23066401-23066420 | MS.gene29249:intron | 50.0% | |
| GCTCCCGAGGCTTCTAAATA+TGG | + | chr1.1:23064643-23064662 | MS.gene29249:CDS | 50.0% | |
| GGATGGTATACCGGACATTC+TGG | - | chr1.1:23064577-23064596 | None:intergenic | 50.0% | |
| GTTCGACCAATTGTGCCTAG+TGG | - | chr1.1:23066410-23066429 | None:intergenic | 50.0% | |
| ! | CTTTTGGCCCTCATCACTGA+TGG | - | chr1.1:23067658-23067677 | None:intergenic | 50.0% |
| !! | GGAAAGGTACTTCAGCCACT+AGG | + | chr1.1:23066392-23066411 | MS.gene29249:intron | 50.0% |
| GACATGCAGCCTCTGCCATA+GGG | + | chr1.1:23066981-23067000 | MS.gene29249:CDS | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | + | chr1.1:23066057-23066076 | MS.gene29249:CDS | 55.0% | |
| TGACATGCAGCCTCTGCCAT+AGG | + | chr1.1:23066980-23066999 | MS.gene29249:CDS | 55.0% | |
| ! | TTGCTTGCTGCAGCCCCAAA+TGG | - | chr1.1:23066718-23066737 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 23064499 | 23067777 | 23064499 | ID=MS.gene29249 |
| chr1.1 | mRNA | 23064499 | 23067777 | 23064499 | ID=MS.gene29249.t1;Parent=MS.gene29249 |
| chr1.1 | exon | 23064499 | 23064664 | 23064499 | ID=MS.gene29249.t1.exon1;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23064499 | 23064664 | 23064499 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| chr1.1 | exon | 23064874 | 23065030 | 23064874 | ID=MS.gene29249.t1.exon2;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23064874 | 23065030 | 23064874 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| chr1.1 | exon | 23065113 | 23065332 | 23065113 | ID=MS.gene29249.t1.exon3;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23065113 | 23065332 | 23065113 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| chr1.1 | exon | 23065535 | 23065588 | 23065535 | ID=MS.gene29249.t1.exon4;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23065535 | 23065588 | 23065535 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| chr1.1 | exon | 23065685 | 23065764 | 23065685 | ID=MS.gene29249.t1.exon5;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23065685 | 23065764 | 23065685 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| chr1.1 | exon | 23065852 | 23066129 | 23065852 | ID=MS.gene29249.t1.exon6;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23065852 | 23066129 | 23065852 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| chr1.1 | exon | 23066668 | 23067066 | 23066668 | ID=MS.gene29249.t1.exon7;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23066668 | 23067066 | 23066668 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| chr1.1 | exon | 23067154 | 23067314 | 23067154 | ID=MS.gene29249.t1.exon8;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23067154 | 23067314 | 23067154 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| chr1.1 | exon | 23067499 | 23067777 | 23067499 | ID=MS.gene29249.t1.exon9;Parent=MS.gene29249.t1 |
| chr1.1 | CDS | 23067499 | 23067777 | 23067499 | ID=cds.MS.gene29249.t1;Parent=MS.gene29249.t1 |
| Gene Sequence |
| Protein sequence |
