Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29388.t1 | AFK81065.1 | 86 | 200 | 15 | 6 | 1 | 189 | 1 | 198 | 6.70E-87 | 330.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29388.t1 | Q9FML4 | 61.0 | 195 | 46 | 4 | 2 | 179 | 3 | 184 | 2.4e-56 | 219.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29388.t1 | I6QB37 | 86.0 | 200 | 15 | 6 | 1 | 189 | 1 | 198 | 4.9e-87 | 330.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene29388.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29388.t1 | MTR_3g077240 | 100.000 | 186 | 0 | 0 | 1 | 186 | 1 | 186 | 5.06e-138 | 383 |
MS.gene29388.t1 | MTR_4g105170 | 75.000 | 176 | 34 | 4 | 7 | 177 | 8 | 178 | 3.74e-86 | 252 |
MS.gene29388.t1 | MTR_7g033800 | 60.526 | 190 | 56 | 3 | 1 | 189 | 1 | 172 | 1.75e-71 | 214 |
MS.gene29388.t1 | MTR_6g005070 | 64.151 | 159 | 30 | 2 | 1 | 159 | 1 | 132 | 1.18e-65 | 198 |
MS.gene29388.t1 | MTR_6g005080 | 78.261 | 115 | 25 | 0 | 1 | 115 | 1 | 115 | 4.88e-64 | 194 |
MS.gene29388.t1 | MTR_8g040900 | 75.221 | 113 | 25 | 1 | 1 | 113 | 1 | 110 | 4.38e-52 | 167 |
MS.gene29388.t1 | MTR_5g017950 | 55.556 | 153 | 58 | 1 | 4 | 156 | 2 | 144 | 2.21e-51 | 167 |
MS.gene29388.t1 | MTR_5g083230 | 71.154 | 104 | 30 | 0 | 8 | 111 | 4 | 107 | 3.36e-50 | 160 |
MS.gene29388.t1 | MTR_2g068760 | 56.204 | 137 | 60 | 0 | 9 | 145 | 12 | 148 | 3.55e-49 | 157 |
MS.gene29388.t1 | MTR_3g073690 | 54.140 | 157 | 68 | 2 | 4 | 157 | 3 | 158 | 3.71e-48 | 155 |
MS.gene29388.t1 | MTR_4g083680 | 65.714 | 105 | 36 | 0 | 9 | 113 | 14 | 118 | 2.48e-47 | 153 |
MS.gene29388.t1 | MTR_3g452660 | 55.245 | 143 | 64 | 0 | 5 | 147 | 2 | 144 | 7.38e-47 | 155 |
MS.gene29388.t1 | MTR_5g083010 | 53.571 | 140 | 54 | 1 | 8 | 136 | 9 | 148 | 9.40e-47 | 151 |
MS.gene29388.t1 | MTR_3g031660 | 64.423 | 104 | 37 | 0 | 8 | 111 | 5 | 108 | 2.98e-46 | 150 |
MS.gene29388.t1 | MTR_3g071590 | 66.346 | 104 | 35 | 0 | 8 | 111 | 6 | 109 | 8.65e-46 | 148 |
MS.gene29388.t1 | MTR_5g083960 | 51.408 | 142 | 60 | 2 | 8 | 140 | 37 | 178 | 7.41e-44 | 144 |
MS.gene29388.t1 | MTR_3g094690 | 60.550 | 109 | 43 | 0 | 9 | 117 | 46 | 154 | 1.89e-43 | 145 |
MS.gene29388.t1 | MTR_2g093310 | 55.963 | 109 | 48 | 0 | 9 | 117 | 32 | 140 | 2.05e-42 | 141 |
MS.gene29388.t1 | MTR_3g071420 | 65.625 | 96 | 33 | 0 | 8 | 103 | 12 | 107 | 2.18e-42 | 140 |
MS.gene29388.t1 | MTR_3g094690 | 59.633 | 109 | 43 | 1 | 9 | 117 | 46 | 153 | 6.64e-41 | 138 |
MS.gene29388.t1 | MTR_4g060950 | 55.455 | 110 | 48 | 1 | 9 | 117 | 23 | 132 | 1.04e-39 | 134 |
MS.gene29388.t1 | MTR_1g095850 | 58.252 | 103 | 43 | 0 | 11 | 113 | 73 | 175 | 3.22e-39 | 134 |
MS.gene29388.t1 | MTR_5g075020 | 57.692 | 130 | 45 | 2 | 9 | 128 | 42 | 171 | 4.29e-39 | 134 |
MS.gene29388.t1 | MTR_5g075020 | 57.692 | 130 | 45 | 2 | 9 | 128 | 46 | 175 | 7.58e-39 | 133 |
MS.gene29388.t1 | MTR_7g096530 | 57.798 | 109 | 45 | 1 | 3 | 110 | 7 | 115 | 2.37e-38 | 131 |
MS.gene29388.t1 | MTR_8g036085 | 57.143 | 105 | 44 | 1 | 10 | 113 | 23 | 127 | 2.24e-37 | 129 |
MS.gene29388.t1 | MTR_8g036105 | 56.410 | 117 | 50 | 1 | 10 | 125 | 18 | 134 | 8.52e-37 | 127 |
MS.gene29388.t1 | MTR_1g070220 | 54.701 | 117 | 47 | 2 | 1 | 111 | 1 | 117 | 7.51e-36 | 124 |
MS.gene29388.t1 | MTR_7g074990 | 61.053 | 95 | 36 | 1 | 10 | 103 | 20 | 114 | 6.39e-35 | 123 |
MS.gene29388.t1 | MTR_7g028905 | 50.909 | 110 | 51 | 1 | 9 | 118 | 4 | 110 | 1.66e-34 | 118 |
MS.gene29388.t1 | MTR_6g027710 | 51.818 | 110 | 50 | 2 | 9 | 115 | 39 | 148 | 1.67e-33 | 119 |
MS.gene29388.t1 | MTR_5g080470 | 51.485 | 101 | 48 | 1 | 5 | 104 | 2 | 102 | 3.19e-32 | 115 |
MS.gene29388.t1 | MTR_8g079660 | 46.789 | 109 | 58 | 0 | 10 | 118 | 8 | 116 | 4.16e-32 | 116 |
MS.gene29388.t1 | MTR_7g096610 | 57.292 | 96 | 40 | 1 | 9 | 103 | 7 | 102 | 5.34e-32 | 115 |
MS.gene29388.t1 | MTR_1g070205 | 54.737 | 95 | 42 | 1 | 10 | 103 | 12 | 106 | 1.31e-31 | 114 |
MS.gene29388.t1 | MTR_7g075230 | 56.731 | 104 | 42 | 2 | 10 | 110 | 12 | 115 | 2.17e-31 | 113 |
MS.gene29388.t1 | MTR_5g093010 | 44.628 | 121 | 65 | 1 | 11 | 129 | 6 | 126 | 1.29e-30 | 109 |
MS.gene29388.t1 | MTR_8g079620 | 47.115 | 104 | 55 | 0 | 10 | 113 | 8 | 111 | 7.49e-30 | 110 |
MS.gene29388.t1 | MTR_4g107450 | 48.000 | 100 | 52 | 0 | 11 | 110 | 11 | 110 | 5.66e-29 | 109 |
MS.gene29388.t1 | MTR_8g079580 | 46.364 | 110 | 58 | 1 | 10 | 118 | 8 | 117 | 5.09e-28 | 105 |
MS.gene29388.t1 | MTR_6g011200 | 45.918 | 98 | 52 | 1 | 8 | 104 | 7 | 104 | 6.75e-28 | 105 |
MS.gene29388.t1 | MTR_6g027700 | 47.000 | 100 | 52 | 1 | 10 | 108 | 7 | 106 | 2.33e-27 | 102 |
MS.gene29388.t1 | MTR_8g017090 | 43.689 | 103 | 58 | 0 | 11 | 113 | 13 | 115 | 3.66e-26 | 102 |
MS.gene29388.t1 | MTR_6g011230 | 35.252 | 139 | 85 | 2 | 11 | 145 | 12 | 149 | 3.69e-25 | 97.1 |
MS.gene29388.t1 | MTR_6g011250 | 39.370 | 127 | 72 | 2 | 8 | 129 | 7 | 133 | 4.53e-24 | 93.6 |
MS.gene29388.t1 | MTR_4g099230 | 41.053 | 95 | 55 | 1 | 11 | 104 | 3 | 97 | 2.83e-23 | 90.9 |
MS.gene29388.t1 | MTR_2g100020 | 43.011 | 93 | 53 | 0 | 11 | 103 | 20 | 112 | 3.19e-23 | 93.6 |
MS.gene29388.t1 | MTR_5g085390 | 39.423 | 104 | 62 | 1 | 8 | 110 | 7 | 110 | 5.79e-20 | 84.3 |
MS.gene29388.t1 | MTR_4g088035 | 29.697 | 165 | 99 | 4 | 9 | 164 | 5 | 161 | 3.48e-18 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29388.t1 | AT5G63090 | 61.929 | 197 | 44 | 5 | 1 | 179 | 1 | 184 | 2.55e-73 | 219 |
MS.gene29388.t1 | AT5G63090 | 61.929 | 197 | 44 | 5 | 1 | 179 | 1 | 184 | 2.55e-73 | 219 |
MS.gene29388.t1 | AT5G63090 | 61.929 | 197 | 44 | 5 | 1 | 179 | 1 | 184 | 2.55e-73 | 219 |
MS.gene29388.t1 | AT5G63090 | 61.929 | 197 | 44 | 5 | 1 | 179 | 1 | 184 | 2.55e-73 | 219 |
MS.gene29388.t1 | AT3G27650 | 79.279 | 111 | 23 | 0 | 4 | 114 | 33 | 143 | 3.80e-63 | 192 |
MS.gene29388.t1 | AT1G65620 | 72.973 | 111 | 30 | 0 | 3 | 113 | 2 | 112 | 4.06e-51 | 163 |
MS.gene29388.t1 | AT1G65620 | 72.973 | 111 | 30 | 0 | 3 | 113 | 2 | 112 | 4.06e-51 | 163 |
MS.gene29388.t1 | AT1G65620 | 72.973 | 111 | 30 | 0 | 3 | 113 | 2 | 112 | 4.06e-51 | 163 |
MS.gene29388.t1 | AT1G65620 | 72.973 | 111 | 30 | 0 | 3 | 113 | 2 | 112 | 4.06e-51 | 163 |
MS.gene29388.t1 | AT1G65620 | 72.973 | 111 | 30 | 0 | 3 | 113 | 2 | 112 | 4.06e-51 | 163 |
MS.gene29388.t1 | AT5G66870 | 62.791 | 129 | 41 | 2 | 1 | 129 | 1 | 122 | 2.32e-50 | 165 |
MS.gene29388.t1 | AT2G23660 | 60.504 | 119 | 43 | 1 | 8 | 126 | 3 | 117 | 6.72e-49 | 161 |
MS.gene29388.t1 | AT2G23660 | 60.504 | 119 | 43 | 1 | 8 | 126 | 3 | 117 | 6.72e-49 | 161 |
MS.gene29388.t1 | AT2G23660 | 60.504 | 119 | 43 | 1 | 8 | 126 | 3 | 117 | 6.72e-49 | 161 |
MS.gene29388.t1 | AT2G30130 | 69.231 | 104 | 32 | 0 | 8 | 111 | 6 | 109 | 7.55e-49 | 157 |
MS.gene29388.t1 | AT2G30340 | 57.759 | 116 | 49 | 0 | 9 | 124 | 52 | 167 | 3.72e-44 | 147 |
MS.gene29388.t1 | AT2G30340 | 57.759 | 116 | 49 | 0 | 9 | 124 | 51 | 166 | 3.83e-44 | 147 |
MS.gene29388.t1 | AT1G31320 | 72.727 | 88 | 24 | 0 | 9 | 96 | 12 | 99 | 1.07e-43 | 143 |
MS.gene29388.t1 | AT1G07900 | 58.333 | 108 | 45 | 0 | 9 | 116 | 32 | 139 | 2.37e-43 | 143 |
MS.gene29388.t1 | AT1G16530 | 62.264 | 106 | 39 | 1 | 9 | 113 | 13 | 118 | 1.04e-42 | 140 |
MS.gene29388.t1 | AT2G28500 | 60.194 | 103 | 41 | 0 | 9 | 111 | 54 | 156 | 2.22e-41 | 139 |
MS.gene29388.t1 | AT3G11090 | 54.167 | 120 | 52 | 2 | 8 | 127 | 9 | 125 | 1.14e-39 | 133 |
MS.gene29388.t1 | AT3G26660 | 56.000 | 100 | 44 | 0 | 11 | 110 | 6 | 105 | 2.24e-38 | 128 |
MS.gene29388.t1 | AT2G40470 | 53.676 | 136 | 50 | 2 | 9 | 139 | 19 | 146 | 2.62e-38 | 130 |
MS.gene29388.t1 | AT3G26620 | 56.000 | 100 | 44 | 0 | 11 | 110 | 6 | 105 | 2.64e-38 | 128 |
MS.gene29388.t1 | AT2G40470 | 53.676 | 136 | 50 | 2 | 9 | 139 | 44 | 171 | 6.13e-38 | 130 |
MS.gene29388.t1 | AT3G03760 | 55.769 | 104 | 45 | 1 | 9 | 111 | 50 | 153 | 2.84e-36 | 127 |
MS.gene29388.t1 | AT2G45420 | 59.596 | 99 | 39 | 1 | 13 | 110 | 40 | 138 | 3.08e-35 | 124 |
MS.gene29388.t1 | AT4G00220 | 59.596 | 99 | 39 | 1 | 13 | 110 | 20 | 118 | 4.17e-35 | 123 |
MS.gene29388.t1 | AT5G06080 | 42.405 | 158 | 87 | 3 | 5 | 161 | 2 | 156 | 4.11e-34 | 119 |
MS.gene29388.t1 | AT2G42430 | 52.294 | 109 | 51 | 1 | 3 | 110 | 8 | 116 | 1.02e-33 | 120 |
MS.gene29388.t1 | AT4G00210 | 49.600 | 125 | 54 | 2 | 3 | 126 | 4 | 120 | 1.78e-33 | 119 |
MS.gene29388.t1 | AT2G45410 | 55.085 | 118 | 47 | 3 | 13 | 126 | 19 | 134 | 2.27e-33 | 117 |
MS.gene29388.t1 | AT2G31310 | 55.208 | 96 | 42 | 1 | 9 | 103 | 6 | 101 | 9.08e-33 | 116 |
MS.gene29388.t1 | AT3G58190 | 55.208 | 96 | 42 | 1 | 10 | 104 | 11 | 106 | 1.70e-32 | 116 |
MS.gene29388.t1 | AT2G42440 | 52.577 | 97 | 45 | 1 | 9 | 104 | 6 | 102 | 8.21e-32 | 115 |
MS.gene29388.t1 | AT5G35900 | 46.610 | 118 | 63 | 0 | 11 | 128 | 6 | 123 | 2.63e-31 | 113 |
MS.gene29388.t1 | AT3G50510 | 44.915 | 118 | 62 | 1 | 9 | 126 | 11 | 125 | 4.83e-30 | 109 |
MS.gene29388.t1 | AT3G50510 | 44.915 | 118 | 62 | 1 | 9 | 126 | 11 | 125 | 4.83e-30 | 109 |
MS.gene29388.t1 | AT3G13850 | 44.660 | 103 | 57 | 0 | 11 | 113 | 37 | 139 | 1.32e-28 | 107 |
MS.gene29388.t1 | AT3G47870 | 42.000 | 100 | 58 | 0 | 11 | 110 | 37 | 136 | 9.64e-25 | 98.6 |
MS.gene29388.t1 | AT1G72980 | 44.792 | 96 | 53 | 0 | 9 | 104 | 12 | 107 | 6.83e-23 | 91.7 |
MS.gene29388.t1 | AT4G22700 | 37.984 | 129 | 76 | 3 | 11 | 136 | 6 | 133 | 1.98e-21 | 87.0 |
MS.gene29388.t1 | AT1G06280 | 42.500 | 80 | 46 | 0 | 8 | 87 | 22 | 101 | 5.72e-18 | 78.2 |
MS.gene29388.t1 | AT2G19820 | 36.667 | 90 | 56 | 1 | 9 | 97 | 11 | 100 | 4.42e-15 | 68.9 |
MS.gene29388.t1 | AT5G15060 | 40.260 | 77 | 44 | 1 | 7 | 81 | 14 | 90 | 7.28e-15 | 68.6 |
MS.gene29388.t1 | AT3G27940 | 39.394 | 66 | 40 | 0 | 10 | 75 | 5 | 70 | 2.31e-11 | 59.7 |
MS.gene29388.t1 | AT3G27940 | 39.394 | 66 | 40 | 0 | 10 | 75 | 5 | 70 | 2.31e-11 | 59.7 |
MS.gene29388.t1 | AT3G27940 | 39.394 | 66 | 40 | 0 | 10 | 75 | 5 | 70 | 2.31e-11 | 59.7 |
Find 44 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCAACGTTCACAAGATCTT+TGG | 0.310163 | 3.2:+68330361 | MS.gene29388:CDS |
TCTTCCTCCTCTTGTTGTTC+CGG | 0.318724 | 3.2:+68330621 | MS.gene29388:CDS |
AGAGGTGGAAGAGAAGAATT+AGG | 0.321024 | 3.2:-68330601 | None:intergenic |
AGACAGTTTAGTTCAAGATT+TGG | 0.321989 | 3.2:+68330664 | MS.gene29388:CDS |
GGTTCTTCTGGTGGAAAGTA+TGG | 0.385993 | 3.2:-68330328 | None:intergenic |
TTTGGTAATGGAAATGTTGA+TGG | 0.387117 | 3.2:+68330682 | MS.gene29388:CDS |
AATGGAAATGTTGATGGAAA+TGG | 0.392662 | 3.2:+68330688 | MS.gene29388:CDS |
GGTGTAGGAGGAAGAGGAGG+AGG | 0.416115 | 3.2:+68330778 | MS.gene29388:CDS |
AGTGGAGGTGTAGGAGGAAG+AGG | 0.435749 | 3.2:+68330772 | MS.gene29388:CDS |
GATATAAGTGGAGGTGTAGG+AGG | 0.445011 | 3.2:+68330766 | MS.gene29388:CDS |
TTTAGTTCAAGATTTGGTAA+TGG | 0.446442 | 3.2:+68330670 | MS.gene29388:CDS |
CGTGTGAGAGATCCTGTTTA+TGG | 0.449251 | 3.2:+68330472 | MS.gene29388:CDS |
AATTCACTGCATCTTCTCTC+TGG | 0.451599 | 3.2:-68330426 | None:intergenic |
TTAATCCATGGAATAGCATA+AGG | 0.469520 | 3.2:-68330727 | None:intergenic |
GCACCAACACAACCATAAAC+AGG | 0.472967 | 3.2:-68330484 | None:intergenic |
GAGGATATAAGTGGAGGTGT+AGG | 0.488241 | 3.2:+68330763 | MS.gene29388:CDS |
CTTCGCCGAAAATGCATGCC+AGG | 0.496124 | 3.2:+68330292 | MS.gene29388:CDS |
CTGCATCTTCTCTCTGGTGA+GGG | 0.502538 | 3.2:-68330420 | None:intergenic |
ACAAGTTCAGAGGCTTCAAA+AGG | 0.506762 | 3.2:+68330525 | MS.gene29388:CDS |
GCCTCTGAACTTGTCTCTGA+AGG | 0.518925 | 3.2:-68330516 | None:intergenic |
GATCCTGTTTATGGTTGTGT+TGG | 0.519160 | 3.2:+68330481 | MS.gene29388:CDS |
GGAGGTGTAGGAGGAAGAGG+AGG | 0.524745 | 3.2:+68330775 | MS.gene29388:CDS |
GGAACAACAAGAGGAGGAAG+AGG | 0.530679 | 3.2:-68330619 | None:intergenic |
ACCTCTTCTGAGGATATAAG+TGG | 0.541161 | 3.2:+68330754 | MS.gene29388:CDS |
CATCTTCTCTCTGGTGAGGG+AGG | 0.545055 | 3.2:-68330417 | None:intergenic |
AGGAATTTGCAGGCTGCACA+TGG | 0.545835 | 3.2:-68330271 | None:intergenic |
ACTGCATCTTCTCTCTGGTG+AGG | 0.556115 | 3.2:-68330421 | None:intergenic |
TGAGATTGATGAAACGAAGC+CGG | 0.556305 | 3.2:-68330640 | None:intergenic |
TCCACTTATATCCTCAGAAG+AGG | 0.570244 | 3.2:-68330755 | None:intergenic |
ACAACAAGAGGAGGAAGAGG+TGG | 0.575947 | 3.2:-68330616 | None:intergenic |
TCCTTCAGAGACAAGTTCAG+AGG | 0.577279 | 3.2:+68330515 | MS.gene29388:CDS |
GATTAATGATACCTCTTCTG+AGG | 0.582743 | 3.2:+68330744 | MS.gene29388:CDS |
AACGAAGCCGGAACAACAAG+AGG | 0.585009 | 3.2:-68330628 | None:intergenic |
TATGGTGCAAAGATGCAGCC+TGG | 0.588900 | 3.2:-68330310 | None:intergenic |
TTCCCTTGCTTATGAAGCCG+AGG | 0.588970 | 3.2:+68330447 | MS.gene29388:CDS |
GCCAAAGATCTTGTGAACGT+TGG | 0.589226 | 3.2:-68330362 | None:intergenic |
AGGATCTCTCACACGTGCCT+CGG | 0.589439 | 3.2:-68330464 | None:intergenic |
GAAGAGGTATCATTAATCCA+TGG | 0.590052 | 3.2:-68330739 | None:intergenic |
GTGCCTCGGCTTCATAAGCA+AGG | 0.591344 | 3.2:-68330450 | None:intergenic |
GAAGCCGGAACAACAAGAGG+AGG | 0.613964 | 3.2:-68330625 | None:intergenic |
TTGTCTCTGAAGGAAAGAGA+TGG | 0.626573 | 3.2:-68330506 | None:intergenic |
TGCCTCGGCTTCATAAGCAA+GGG | 0.648971 | 3.2:-68330449 | None:intergenic |
GGTGAGGGAGGAGTTCGTTG+AGG | 0.665155 | 3.2:-68330405 | None:intergenic |
TCTTCTGAGGATATAAGTGG+AGG | 0.670110 | 3.2:+68330757 | MS.gene29388:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAGTTCAAGATTTGGTAA+TGG | + | chr3.2:68330670-68330689 | MS.gene29388:CDS | 25.0% |
TTAATCCATGGAATAGCATA+AGG | - | chr3.2:68330730-68330749 | None:intergenic | 30.0% | |
! | AATGGAAATGTTGATGGAAA+TGG | + | chr3.2:68330688-68330707 | MS.gene29388:CDS | 30.0% |
! | AGACAGTTTAGTTCAAGATT+TGG | + | chr3.2:68330664-68330683 | MS.gene29388:CDS | 30.0% |
!! | TTTGGTAATGGAAATGTTGA+TGG | + | chr3.2:68330682-68330701 | MS.gene29388:CDS | 30.0% |
GATTAATGATACCTCTTCTG+AGG | + | chr3.2:68330744-68330763 | MS.gene29388:CDS | 35.0% | |
! | CTTTTCCTTATGCTATTCCA+TGG | + | chr3.2:68330722-68330741 | MS.gene29388:CDS | 35.0% |
! | TGAACGTTGGCAAATTTTTG+AGG | - | chr3.2:68330352-68330371 | None:intergenic | 35.0% |
!! | GAAGAGGTATCATTAATCCA+TGG | - | chr3.2:68330742-68330761 | None:intergenic | 35.0% |
!!! | AATTTTTGAGGTTCTTCTGG+TGG | - | chr3.2:68330340-68330359 | None:intergenic | 35.0% |
!!! | GCAAATTTTTGAGGTTCTTC+TGG | - | chr3.2:68330343-68330362 | None:intergenic | 35.0% |
AATTCACTGCATCTTCTCTC+TGG | - | chr3.2:68330429-68330448 | None:intergenic | 40.0% | |
ACAAGTTCAGAGGCTTCAAA+AGG | + | chr3.2:68330525-68330544 | MS.gene29388:CDS | 40.0% | |
AGAGGTGGAAGAGAAGAATT+AGG | - | chr3.2:68330604-68330623 | None:intergenic | 40.0% | |
GATCCTGTTTATGGTTGTGT+TGG | + | chr3.2:68330481-68330500 | MS.gene29388:CDS | 40.0% | |
TCCACTTATATCCTCAGAAG+AGG | - | chr3.2:68330758-68330777 | None:intergenic | 40.0% | |
TGAGATTGATGAAACGAAGC+CGG | - | chr3.2:68330643-68330662 | None:intergenic | 40.0% | |
! | ACCTCTTCTGAGGATATAAG+TGG | + | chr3.2:68330754-68330773 | MS.gene29388:CDS | 40.0% |
! | TCTTCTGAGGATATAAGTGG+AGG | + | chr3.2:68330757-68330776 | MS.gene29388:CDS | 40.0% |
! | TTGTCTCTGAAGGAAAGAGA+TGG | - | chr3.2:68330509-68330528 | None:intergenic | 40.0% |
CGTGTGAGAGATCCTGTTTA+TGG | + | chr3.2:68330472-68330491 | MS.gene29388:CDS | 45.0% | |
GCACCAACACAACCATAAAC+AGG | - | chr3.2:68330487-68330506 | None:intergenic | 45.0% | |
GCCAAAGATCTTGTGAACGT+TGG | - | chr3.2:68330365-68330384 | None:intergenic | 45.0% | |
GCCAACGTTCACAAGATCTT+TGG | + | chr3.2:68330361-68330380 | MS.gene29388:CDS | 45.0% | |
GGTTCTTCTGGTGGAAAGTA+TGG | - | chr3.2:68330331-68330350 | None:intergenic | 45.0% | |
TCCTTCAGAGACAAGTTCAG+AGG | + | chr3.2:68330515-68330534 | MS.gene29388:CDS | 45.0% | |
! | GAGGATATAAGTGGAGGTGT+AGG | + | chr3.2:68330763-68330782 | MS.gene29388:CDS | 45.0% |
! | GATATAAGTGGAGGTGTAGG+AGG | + | chr3.2:68330766-68330785 | MS.gene29388:CDS | 45.0% |
! | TTTTCGGCGAAGGAATTTGC+AGG | - | chr3.2:68330284-68330303 | None:intergenic | 45.0% |
!! | TCTTCCTCCTCTTGTTGTTC+CGG | + | chr3.2:68330621-68330640 | MS.gene29388:CDS | 45.0% |
AACGAAGCCGGAACAACAAG+AGG | - | chr3.2:68330631-68330650 | None:intergenic | 50.0% | |
ACAACAAGAGGAGGAAGAGG+TGG | - | chr3.2:68330619-68330638 | None:intergenic | 50.0% | |
ACTGCATCTTCTCTCTGGTG+AGG | - | chr3.2:68330424-68330443 | None:intergenic | 50.0% | |
AGGAATTTGCAGGCTGCACA+TGG | - | chr3.2:68330274-68330293 | None:intergenic | 50.0% | |
CTGCATCTTCTCTCTGGTGA+GGG | - | chr3.2:68330423-68330442 | None:intergenic | 50.0% | |
GCCTCTGAACTTGTCTCTGA+AGG | - | chr3.2:68330519-68330538 | None:intergenic | 50.0% | |
GGAACAACAAGAGGAGGAAG+AGG | - | chr3.2:68330622-68330641 | None:intergenic | 50.0% | |
TATGGTGCAAAGATGCAGCC+TGG | - | chr3.2:68330313-68330332 | None:intergenic | 50.0% | |
TGCCTCGGCTTCATAAGCAA+GGG | - | chr3.2:68330452-68330471 | None:intergenic | 50.0% | |
TTCCCTTGCTTATGAAGCCG+AGG | + | chr3.2:68330447-68330466 | MS.gene29388:CDS | 50.0% | |
! | TGCAGCCTGGCATGCATTTT+CGG | - | chr3.2:68330300-68330319 | None:intergenic | 50.0% |
AGGATCTCTCACACGTGCCT+CGG | - | chr3.2:68330467-68330486 | None:intergenic | 55.0% | |
CATCTTCTCTCTGGTGAGGG+AGG | - | chr3.2:68330420-68330439 | None:intergenic | 55.0% | |
CTTCGCCGAAAATGCATGCC+AGG | + | chr3.2:68330292-68330311 | MS.gene29388:CDS | 55.0% | |
GAAGCCGGAACAACAAGAGG+AGG | - | chr3.2:68330628-68330647 | None:intergenic | 55.0% | |
GTGCCTCGGCTTCATAAGCA+AGG | - | chr3.2:68330453-68330472 | None:intergenic | 55.0% | |
! | AGTGGAGGTGTAGGAGGAAG+AGG | + | chr3.2:68330772-68330791 | MS.gene29388:CDS | 55.0% |
! | CTGGCATGCATTTTCGGCGA+AGG | - | chr3.2:68330294-68330313 | None:intergenic | 55.0% |
GGTGAGGGAGGAGTTCGTTG+AGG | - | chr3.2:68330408-68330427 | None:intergenic | 60.0% | |
GGTGTAGGAGGAAGAGGAGG+AGG | + | chr3.2:68330778-68330797 | MS.gene29388:CDS | 60.0% | |
! | GGAGGTGTAGGAGGAAGAGG+AGG | + | chr3.2:68330775-68330794 | MS.gene29388:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 68330244 | 68330813 | 68330244 | ID=MS.gene29388 |
chr3.2 | mRNA | 68330244 | 68330813 | 68330244 | ID=MS.gene29388.t1;Parent=MS.gene29388 |
chr3.2 | exon | 68330244 | 68330813 | 68330244 | ID=MS.gene29388.t1.exon1;Parent=MS.gene29388.t1 |
chr3.2 | CDS | 68330244 | 68330813 | 68330244 | ID=cds.MS.gene29388.t1;Parent=MS.gene29388.t1 |
Gene Sequence |
Protein sequence |